Citrus Sinensis ID: 024008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSLL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHccccccccccccHHHHHHHHccccccccEEEEccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHccccccccEEEEEcccccccccccccEEEEccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHccccEEEEEEEEccccccccccccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHccccccccEcccccEcccccccEcccccccccccHcccccccccccHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHcccccccEEEcccccHHHHHHHHccccEEEEEEccHHHHHHHHHHHcccccccEEEEEEcccccccccccccEEEEHHEEHHccHHHHHHHHHHHHHHcccccEEEEEEcccHHccccccccccHHHHHHHHcccccEEEEEccccccccHHHHHHcHHHHHHHHcHccc
Coil and Loop (DISEMBL)
mrtvsrgmISNAlrfsfsipnilqlpissvrtrsfgiratkpkmgknreevendnvikshprVNKLQQLMHIEssggwekcweegltpwdigqpapiIVHLhqsgalpkgralvpgcgtgydvvamasperYVVGLEISDIAIKKAEElssslpnakfvsflkadfftwcptelFDLIFDYTFFCAIEPEMRAAWAQKIKDFLkpdgelitlmfpisdhvggppykvsvsDYEEVLqpmgfqaisivdnklaigprkgreklgrWKRSVRHSLL
Flexible Loop (DISEMBL)
mrtvsrgmISNALRFsfsipnilqlpissvrtrsfgiratkpkmgknreevendnvikshprvNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFqaisivdnklaigprkgreklgrwkrsvrhsll
Low Complexity Region (SEG)
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSLL
Disordered region (IsUnstruct)
********ISNALRFSFSIPNILQLPISSVRTRSFG*****************************LQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG********************
Disordered Region (DISOPRED)
********ISNALRFSFSIPNILQLPISSVRTR*****************************************SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRH***
Disordered Region (DISEMBL)
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKL************
Disordered Region (DISPRO)
*****R**ISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKN*******NVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q6AWU6	226	Probable thiol methyltran	yes	no	0.762	0.924	0.671	4e-82
Q93V78	226	Thiocyanate methyltransfe	N/A	no	0.700	0.849	0.677	8e-77
Q93XC4	226	Probable thiocyanate meth	N/A	no	0.817	0.991	0.593	9e-76
O80562	227	Probable thiol methyltran	no	no	0.718	0.867	0.629	2e-73
Q0WP12	246	Thiocyanate methyltransfe	no	no	0.770	0.857	0.606	9e-72
A7MVH9	216	Thiopurine S-methyltransf	yes	no	0.686	0.870	0.269	7e-12
Q87Q54	216	Thiopurine S-methyltransf	yes	no	0.686	0.870	0.245	4e-11
C3LLS2	218	Thiopurine S-methyltransf	yes	no	0.543	0.683	0.286	8e-11
Q9KSN0	218	Thiopurine S-methyltransf	yes	no	0.543	0.683	0.286	8e-11
A5F1V4	218	Thiopurine S-methyltransf	yes	no	0.543	0.683	0.280	2e-10

>sp|Q6AWU6|HOL3_ARATH Probable thiol methyltransferase 2 OS=Arabidopsis thaliana GN=HOL3 PE=1 SV=1

 Score =  304 bits (779), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 171/210 (81%), Gaps = 1/210 (0%)

Query: 66  LQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVA 125
             +LM   SSGGWEK WE G TPWD+G+P P+I HL ++G+LP GRALVPGCGTGYDVVA
Sbjct: 17  FHRLMSENSSGGWEKSWEAGATPWDLGKPTPVIAHLVETGSLPNGRALVPGCGTGYDVVA 76

Query: 126 MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185
           MASP+R+VVGL+IS  A++++ +  S+LPNAK+ SFL  DFFTW P E FDLIFDYTFFC
Sbjct: 77  MASPDRHVVGLDISKTAVERSTKKFSTLPNAKYFSFLSEDFFTWEPAEKFDLIFDYTFFC 136

Query: 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245
           A EP +R  WAQ+++  LKP GELITLMFPI +  GGPPY+VSVS+YE+VL P+GF+AIS
Sbjct: 137 AFEPGVRPLWAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSEYEKVLIPLGFEAIS 196

Query: 246 IVDNKLAIGPRKGREKLGRWKR-SVRHSLL 274
           IVDN+LA+GPRKG EKLGRWK+ S  HS L
Sbjct: 197 IVDNELAVGPRKGMEKLGRWKKSSTFHSTL 226

S-adenosyl-L-methionine-dependent methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 9

>sp|Q93V78|TMT1_BRAOL Thiocyanate methyltransferase 1 OS=Brassica oleracea GN=TMT1 PE=1 SV=1

 Score =  286 bits (733), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 159/192 (82%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWEKCWE+G+TPWD G+  P++VHL  S +LP GRALVPGCG G+DVVAMASPER+VVG
Sbjct: 33  GGWEKCWEDGITPWDQGRATPLVVHLVDSSSLPLGRALVPGCGGGHDVVAMASPERFVVG 92

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L+IS+ A++KA E   S P AK+ +F+K DFFTW P ELFDLIFDY  FCAIEPEMR AW
Sbjct: 93  LDISESALEKAAETYGSSPKAKYFTFVKEDFFTWRPNELFDLIFDYVVFCAIEPEMRPAW 152

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255
           A+ + + LKPDGELITLM+PI+DH GGPPYKV+VS YE+VL P+GF+A+SI +N  +I  
Sbjct: 153 AKSMYELLKPDGELITLMYPITDHDGGPPYKVAVSTYEDVLVPVGFKAVSIEENPYSIAT 212

Query: 256 RKGREKLGRWKR 267
           RKG+EKLGRWK+
Sbjct: 213 RKGKEKLGRWKK 224

S-adenosyl-L-methionine-dependent methyltransferase. Probably involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage. Also accepts halid ions as substrates with a lower affinity.

Brassica oleracea (taxid: 3712)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q93XC4|TMT2_BRAOL Probable thiocyanate methyltransferase 2 OS=Brassica oleracea GN=TMT2 PE=2 SV=1

 Score =  283 bits (724), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 133/224 (59%), Positives = 167/224 (74%)

Query: 44  MGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ 103
           M + ++   N N     P  +  + L      GGWEKCWE+G+TPWD G+  P++VHL +
Sbjct: 1   MAEVQQNSGNSNGENIIPPEDVAKFLPKTVDEGGWEKCWEDGVTPWDQGRATPLVVHLVE 60

Query: 104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
           S +LP GR LVPGCG G+DVVAMASPERYVVGL+IS+ A++KA E   S P AK+ +F+K
Sbjct: 61  SSSLPLGRGLVPGCGGGHDVVAMASPERYVVGLDISESALEKAAETYGSSPKAKYFTFVK 120

Query: 164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
            DFFTW P ELFDLIFDY  FCAIEPE R AWA+ + + LKPDGELITLM+PI+DH GGP
Sbjct: 121 EDFFTWRPNELFDLIFDYVVFCAIEPETRPAWAKAMYELLKPDGELITLMYPITDHDGGP 180

Query: 224 PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267
           PYKV+VS YE+VL P+GF+A+SI +N  +I  RKG+EKL RWK+
Sbjct: 181 PYKVAVSTYEDVLVPVGFKAVSIEENPYSIATRKGKEKLARWKK 224

S-adenosyl-L-methionine-dependent methyltransferase. Probably involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage (By similarity). Also accepts halid ions as substrates.

Brassica oleracea (taxid: 3712)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|O80562|HOL2_ARATH Probable thiol methyltransferase 1 OS=Arabidopsis thaliana GN=HOL2 PE=1 SV=1

 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 124/197 (62%), Positives = 156/197 (79%)

Query: 71  HIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE 130
            + + GGW+KCWE+G+TPWD G+  P+I+HL  S ALP GR LVPGCG G+DVVAMASPE
Sbjct: 29  QVVAEGGWDKCWEDGVTPWDQGRATPLILHLLDSSALPLGRTLVPGCGGGHDVVAMASPE 88

Query: 131 RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPE 190
           R+VVGL+ISD A+ KA E   S P A++ SF+K D FTW P ELFDLIFDY FFCAIEPE
Sbjct: 89  RFVVGLDISDKALNKANETYGSSPKAEYFSFVKEDVFTWRPNELFDLIFDYVFFCAIEPE 148

Query: 191 MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250
           MR AW + + + LKPDGELITLM+P++DH GG PYKV++S YE+VL P+GF+A+S+ +N 
Sbjct: 149 MRPAWGKSMHELLKPDGELITLMYPMTDHEGGAPYKVALSSYEDVLVPVGFKAVSVEENP 208

Query: 251 LAIGPRKGREKLGRWKR 267
            +I  RKG+EKL RWK+
Sbjct: 209 DSIPTRKGKEKLARWKK 225

S-adenosyl-L-methionine-dependent methyltransferase. Involved in glucosinolate metabolism and defense against phytopathogens.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q0WP12|HOL1_ARATH Thiocyanate methyltransferase 1 OS=Arabidopsis thaliana GN=HOL1 PE=1 SV=1

 Score =  270 bits (690), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 162/216 (75%), Gaps = 5/216 (2%)

Query: 46  KNREEVENDNVIKSHPRVNKLQQLMH-IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104
           +N ++    NVI   P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL  +
Sbjct: 6   QNSDQSNGGNVI---PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLVDT 62

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
            +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K 
Sbjct: 63  SSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKE 122

Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGPP
Sbjct: 123 DVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP 182

Query: 225 YKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
           YKV VS +EEVL P+GF+A+S+ +N  AI P + RE
Sbjct: 183 YKVDVSTFEEVLVPIGFKAVSVEENPHAI-PTRQRE 217

S-adenosyl-L-methionine-dependent methyltransferase. Involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|A7MVH9|TPMT_VIBHB Thiopurine S-methyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=tpm PE=3 SV=1

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQ-SGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P++    Q +    +   LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWASNQIGFHLDDVNPLLPAFWQYTNPKREDTVLVPLCGKSEDLIWLATKHDEVQGV 66

Query: 137 EISDIAIKK--AEELSS----------SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +           L     +S    DFFT  P    D+I+D    
Sbjct: 67  ELSLIAVRAFFAEHFYTPTVTPVNGMHELYQFDELSIYTGDFFT-APVSKADIIYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242
            A+  EMR  +A ++K  L P G   L+TL +P  D + GPP+ V V + E++ +  G++
Sbjct: 126 VALPKEMREEYANRVKQLLNPGGRILLVTLNYP-QDEMSGPPFSVPVEEIEQLFE--GYK 182

Query: 243 AISI-VDNKLAIGPRKGREKLGRWKRSV 269
              + VD      P+  ++ L R+   V
Sbjct: 183 VTCLNVDQADENHPKIAKKGLSRFSEEV 210

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|Q87Q54|TPMT_VIBPA Thiopurine S-methyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=tpm PE=3 SV=1

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPII-VHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P++  + H +    + + LVP CG   D+V +A+    V G+
Sbjct: 7   WHSKWASNQIGFHLEDVNPLLPAYWHHANPKREDKVLVPLCGKSEDLVWLATKHDSVEGV 66

Query: 137 EISDIAIKK--AEELSS----------SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +           L     +S    DFFT  P    D+++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTPISGMHELYQFDELSIYTGDFFT-APVSQADIVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242
            A+  +MR  +  ++K  L P G   L+TL +P  + + GPP+ V + + +++    G++
Sbjct: 126 VALPQDMREEYVARLKQLLNPGGRILLVTLNYP-QEEMAGPPFSVPLEEIQQLF--AGYK 182

Query: 243 AISI-VDNKLAIGPRKGREKLGRWKRSV 269
              + VD      P+  ++ L R+   V
Sbjct: 183 VTCLNVDQADEHHPKIAKKGLSRFSEEV 210

Vibrio parahaemolyticus (taxid: 670)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|C3LLS2|TPMT_VIBCM Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tpm PE=3 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 15/164 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P+++      A  +  + LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQGV 66

Query: 137 EISDIAIKK--AEELSS---SLPNAKF-------VSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +   +  NA+        ++    DFFT  P E  DL++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE-LITLMFPISDHVGGPPYKV 227
            A+  EMRA +AQ++   LKP G  L+  M  +   + GPP+ V
Sbjct: 126 VALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|Q9KSN0|TPMT_VIBCH Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=tpm PE=3 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 15/164 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P+++      A  +  + LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQGV 66

Query: 137 EISDIAIKK--AEELSS---SLPNAKF-------VSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +   +  NA+        ++    DFFT  P E  DL++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE-LITLMFPISDHVGGPPYKV 227
            A+  EMRA +AQ++   LKP G  L+  M  +   + GPP+ V
Sbjct: 126 VALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|A5F1V4|TPMT_VIBC3 Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tpm PE=3 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P+++      A  +  + LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQGV 66

Query: 137 EISDIAIKK--AEELSS---SLPNAKF-------VSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +   +  NA+        ++    DFFT  P E  DL++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE-LITLMFPISDHVGGPPYKV 227
            A+  EMR  +AQ++   LKP G  L+  M  +   + GPP+ V
Sbjct: 126 VALPEEMRTEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
296084363	291	unnamed protein product [Vitis vinifera]	0.861	0.810	0.673	7e-95
359478233	225	PREDICTED: probable thiol methyltransfer	0.813	0.991	0.717	3e-94
224140695	192	predicted protein [Populus trichocarpa]	0.700	1.0	0.786	2e-88
449453195	259	PREDICTED: probable thiol methyltransfer	0.846	0.895	0.645	7e-85
255576426	198	Thiopurine S-methyltransferase, putative	0.678	0.939	0.758	3e-83
296084364	224	unnamed protein product [Vitis vinifera]	0.795	0.973	0.675	5e-83
359478304	274	PREDICTED: probable thiol methyltransfer	0.795	0.795	0.675	5e-83
30689545	226	putative thiol methyltransferase 2 [Arab	0.762	0.924	0.671	2e-80
297828113	227	hypothetical protein ARALYDRAFT_483510 [	0.762	0.920	0.677	1e-79
413953152	252	hypothetical protein ZEAMMB73_246013 [Ze	0.857	0.932	0.570	2e-78

>gi|296084363|emb|CBI24751.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 163/242 (67%), Positives = 198/242 (81%), Gaps = 6/242 (2%)

Query: 33  RSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIG 92
           ++ G+  T+ +M  N   +E      S+P+V KL Q++  +S+GGWEK W++G TPWD+G
Sbjct: 56  KNLGVSTTQLRMSNNGSSIE------SNPKVQKLNQIIGSDSAGGWEKSWQQGHTPWDLG 109

Query: 93  QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152
           +P PII HLHQ+G LP G+ LVPGCG GYDVV +A PER+VVGL+ISD AIKKA+ELSSS
Sbjct: 110 KPTPIIQHLHQTGTLPSGKTLVPGCGCGYDVVTIACPERFVVGLDISDSAIKKAKELSSS 169

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
           L NA   +FLK DFFTW PTELFDLIFDYTFFCAIEP+MR+ WA++++  LKPDGEL+TL
Sbjct: 170 LWNANHFTFLKEDFFTWNPTELFDLIFDYTFFCAIEPDMRSVWAKRMRHLLKPDGELLTL 229

Query: 213 MFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHS 272
           MFPISDH GGPPYKVSV+DYEEVL PMGF+A+SIVDNK+AIGPRKGREKLGRWKR+   S
Sbjct: 230 MFPISDHAGGPPYKVSVADYEEVLHPMGFKAVSIVDNKMAIGPRKGREKLGRWKRTPSKS 289

Query: 273 LL 274
           LL
Sbjct: 290 LL 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478233|ref|XP_002275789.2| PREDICTED: probable thiol methyltransferase 2 [Vitis vinifera]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 160/223 (71%), Positives = 191/223 (85%)

Query: 52  ENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGR 111
            N + I+S+P+V KL Q++  +S+GGWEK W++G TPWD+G+P PII HLHQ+G LP G+
Sbjct: 3   NNGSSIESNPKVQKLNQIIGSDSAGGWEKSWQQGHTPWDLGKPTPIIQHLHQTGTLPSGK 62

Query: 112 ALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171
            LVPGCG GYDVV +A PER+VVGL+ISD AIKKA+ELSSSL NA   +FLK DFFTW P
Sbjct: 63  TLVPGCGCGYDVVTIACPERFVVGLDISDSAIKKAKELSSSLWNANHFTFLKEDFFTWNP 122

Query: 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSD 231
           TELFDLIFDYTFFCAIEP+MR+ WA++++  LKPDGEL+TLMFPISDH GGPPYKVSV+D
Sbjct: 123 TELFDLIFDYTFFCAIEPDMRSVWAKRMRHLLKPDGELLTLMFPISDHAGGPPYKVSVAD 182

Query: 232 YEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSLL 274
           YEEVL PMGF+A+SIVDNK+AIGPRKGREKLGRWKR+   SLL
Sbjct: 183 YEEVLHPMGFKAVSIVDNKMAIGPRKGREKLGRWKRTPSKSLL 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140695|ref|XP_002323714.1| predicted protein [Populus trichocarpa] gi|222866716|gb|EEF03847.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 173/192 (90%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWE CWE+GLTPWD+G+P PII+HLHQ+GALPKGRALVPGCG+GYDVVAMA  ERYVVG
Sbjct: 1   GGWENCWEQGLTPWDLGRPTPIILHLHQTGALPKGRALVPGCGSGYDVVAMACSERYVVG 60

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L++S  AI+KA ELSSSLPN+ + +FLKADFFTW P ELFDLIFDYTFFCAIEP MR+ W
Sbjct: 61  LDVSHTAIEKAIELSSSLPNSSYFTFLKADFFTWHPPELFDLIFDYTFFCAIEPGMRSRW 120

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255
           A K+++ LKPDGELITLM+PISDHVGGPPYKVSVSDYEEVL PMGF+A++IVDN+LAI  
Sbjct: 121 ACKVQEMLKPDGELITLMYPISDHVGGPPYKVSVSDYEEVLHPMGFKAVTIVDNELAIEA 180

Query: 256 RKGREKLGRWKR 267
           RKGREK GRW+R
Sbjct: 181 RKGREKFGRWRR 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453195|ref|XP_004144344.1| PREDICTED: probable thiol methyltransferase 2-like [Cucumis sativus]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 183/234 (78%), Gaps = 2/234 (0%)

Query: 38  RATKPKMGKNREEVE-NDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAP 96
           RA   K+  N+   + N +      RV++ Q++M  + SGGW+ CWE+GLTPWD+GQP P
Sbjct: 21  RALTLKLRMNQNSTQHNASKFNHQSRVHEFQKVMGTDHSGGWDICWEQGLTPWDLGQPTP 80

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA 156
           +I HL  +GALP GR LVPGCG+GYDVV MA  ERYVVGL+ISD AI+KA ELSSS PN 
Sbjct: 81  LIGHLCATGALPNGRVLVPGCGSGYDVVQMACAERYVVGLDISDKAIQKAIELSSSSPNM 140

Query: 157 KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216
           +  +FLK DFF+W P ELFDLIFDYTFFCAIEP MR AW Q+I+  LKP+GELITLMFPI
Sbjct: 141 RHCTFLKEDFFSWRPKELFDLIFDYTFFCAIEPVMRQAWGQQIQRLLKPNGELITLMFPI 200

Query: 217 -SDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSV 269
             DH+GGPPYKVSVSDYE+VL P+GF+A+ I DN+LA+ PRKGRE +GRWKRS+
Sbjct: 201 DDDHIGGPPYKVSVSDYEDVLHPLGFKAVLINDNELAVPPRKGREMIGRWKRSL 254

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576426|ref|XP_002529105.1| Thiopurine S-methyltransferase, putative [Ricinus communis] gi|223531456|gb|EEF33289.1| Thiopurine S-methyltransferase, putative [Ricinus communis]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 141/186 (75%), Positives = 169/186 (90%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWEKCWE+G+TPWD+GQP PI++HLH +G+LPKGRAL+PGCG+G+DV+A+A PERYVVG
Sbjct: 12  GGWEKCWEQGVTPWDLGQPTPILLHLHHTGSLPKGRALIPGCGSGHDVIAIACPERYVVG 71

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L+I++ A+KKAEELSSSLPNA + +FLKADFF+W PTELFDLIFDYTFFCAIEPEMR+ W
Sbjct: 72  LDIAEKAVKKAEELSSSLPNANYCTFLKADFFSWQPTELFDLIFDYTFFCAIEPEMRSQW 131

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255
           A +I+D LKPDGELITL+FPI DH+GGPPYKVSVSDYEEVL P+GF+A+SIVDN+LAI  
Sbjct: 132 AIRIQDLLKPDGELITLIFPIDDHLGGPPYKVSVSDYEEVLCPIGFKAVSIVDNELAIKV 191

Query: 256 RKGREK 261
           R G  K
Sbjct: 192 RLGLYK 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084364|emb|CBI24752.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/219 (67%), Positives = 181/219 (82%), Gaps = 1/219 (0%)

Query: 51  VENDNV-IKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPK 109
           + ND+  I+S+  + K+ Q++    +G WE+ W++GLTPWD+G+  PII HLHQ+GALP 
Sbjct: 1   MANDSTSIESNSELQKISQVIGSGFNGSWEEKWQQGLTPWDLGKATPIIEHLHQAGALPN 60

Query: 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW 169
           GR L+PGCG GYDVVA+A PER+VVGL+ISD AIKKA+E SSS  NA    FLKADFFTW
Sbjct: 61  GRTLIPGCGRGYDVVAIACPERFVVGLDISDSAIKKAKESSSSSWNASHFIFLKADFFTW 120

Query: 170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV 229
            PTELFDLI DYTFFCAIEP+MR AWA +++  LKPDGEL+TLMFPISDH GGPPYKVS+
Sbjct: 121 NPTELFDLIIDYTFFCAIEPDMRPAWASRMQQLLKPDGELLTLMFPISDHTGGPPYKVSI 180

Query: 230 SDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268
           +DYE+VL PM F+A+SIVDN++AIG RKGREKLGRWKR+
Sbjct: 181 ADYEKVLHPMRFKAVSIVDNEMAIGSRKGREKLGRWKRT 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478304|ref|XP_002275814.2| PREDICTED: probable thiol methyltransferase 2 [Vitis vinifera]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/219 (67%), Positives = 181/219 (82%), Gaps = 1/219 (0%)

Query: 51  VENDNV-IKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPK 109
           + ND+  I+S+  + K+ Q++    +G WE+ W++GLTPWD+G+  PII HLHQ+GALP 
Sbjct: 1   MANDSTSIESNSELQKISQVIGSGFNGSWEEKWQQGLTPWDLGKATPIIEHLHQAGALPN 60

Query: 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW 169
           GR L+PGCG GYDVVA+A PER+VVGL+ISD AIKKA+E SSS  NA    FLKADFFTW
Sbjct: 61  GRTLIPGCGRGYDVVAIACPERFVVGLDISDSAIKKAKESSSSSWNASHFIFLKADFFTW 120

Query: 170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV 229
            PTELFDLI DYTFFCAIEP+MR AWA +++  LKPDGEL+TLMFPISDH GGPPYKVS+
Sbjct: 121 NPTELFDLIIDYTFFCAIEPDMRPAWASRMQQLLKPDGELLTLMFPISDHTGGPPYKVSI 180

Query: 230 SDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268
           +DYE+VL PM F+A+SIVDN++AIG RKGREKLGRWKR+
Sbjct: 181 ADYEKVLHPMRFKAVSIVDNEMAIGSRKGREKLGRWKRT 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689545|ref|NP_850403.1| putative thiol methyltransferase 2 [Arabidopsis thaliana] gi|75323116|sp|Q6AWU6.1|HOL3_ARATH RecName: Full=Probable thiol methyltransferase 2; AltName: Full=Protein HARMLESS TO OZONE LAYER 3; Short=AtHOL3 gi|50897218|gb|AAT85748.1| At2g43940 [Arabidopsis thaliana] gi|52421315|gb|AAU45227.1| At2g43940 [Arabidopsis thaliana] gi|330255256|gb|AEC10350.1| putative thiol methyltransferase 2 [Arabidopsis thaliana]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 171/210 (81%), Gaps = 1/210 (0%)

Query: 66  LQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVA 125
             +LM   SSGGWEK WE G TPWD+G+P P+I HL ++G+LP GRALVPGCGTGYDVVA
Sbjct: 17  FHRLMSENSSGGWEKSWEAGATPWDLGKPTPVIAHLVETGSLPNGRALVPGCGTGYDVVA 76

Query: 126 MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185
           MASP+R+VVGL+IS  A++++ +  S+LPNAK+ SFL  DFFTW P E FDLIFDYTFFC
Sbjct: 77  MASPDRHVVGLDISKTAVERSTKKFSTLPNAKYFSFLSEDFFTWEPAEKFDLIFDYTFFC 136

Query: 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245
           A EP +R  WAQ+++  LKP GELITLMFPI +  GGPPY+VSVS+YE+VL P+GF+AIS
Sbjct: 137 AFEPGVRPLWAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSEYEKVLIPLGFEAIS 196

Query: 246 IVDNKLAIGPRKGREKLGRWKR-SVRHSLL 274
           IVDN+LA+GPRKG EKLGRWK+ S  HS L
Sbjct: 197 IVDNELAVGPRKGMEKLGRWKKSSTFHSTL 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828113|ref|XP_002881939.1| hypothetical protein ARALYDRAFT_483510 [Arabidopsis lyrata subsp. lyrata] gi|297327778|gb|EFH58198.1| hypothetical protein ARALYDRAFT_483510 [Arabidopsis lyrata subsp. lyrata]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/211 (67%), Positives = 172/211 (81%), Gaps = 2/211 (0%)

Query: 66  LQQLMHIESSGG-WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVV 124
             +LM   SSGG WEK WE G TPWD+G+P P+IV L ++G+LP GRALVPGCGTGYDVV
Sbjct: 17  FHRLMSENSSGGGWEKSWEAGATPWDLGKPTPVIVRLVETGSLPNGRALVPGCGTGYDVV 76

Query: 125 AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184
           AMASP+R+VVGL+IS  A++++ +  SSLPN+K+ SFL  DFFTW P E FDLIFDYTFF
Sbjct: 77  AMASPDRHVVGLDISKTAVERSTKKFSSLPNSKYFSFLSEDFFTWEPAEKFDLIFDYTFF 136

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244
           CA EP +R  WAQ+++  LKPDGELITLMFPI +  GGPPYKVSVS+YE+VL P+GF+AI
Sbjct: 137 CAFEPGVRPLWAQQMEKLLKPDGELITLMFPIDERSGGPPYKVSVSEYEKVLIPLGFEAI 196

Query: 245 SIVDNKLAIGPRKGREKLGRWKR-SVRHSLL 274
           SIVDN+LA+GPRKG EKLGRWK+ S  HS L
Sbjct: 197 SIVDNELAVGPRKGMEKLGRWKKSSTFHSTL 227

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413953152|gb|AFW85801.1| hypothetical protein ZEAMMB73_246013 [Zea mays]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/242 (57%), Positives = 181/242 (74%), Gaps = 7/242 (2%)

Query: 33  RSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIG 92
           R+ G  A     G  R+  EN       P V +L++L   +++ GWEK WE G+TPWD+G
Sbjct: 18  RAMGSSAPVRAAGGTRDPGEN-------PAVGRLRELFTGDAADGWEKSWEFGVTPWDLG 70

Query: 93  QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152
           +P P+I HL +SG LPKGRALVPGCG GYDVVA+ASPER+VVGL+ISD+A+KKA++ SSS
Sbjct: 71  KPTPVIEHLARSGTLPKGRALVPGCGMGYDVVALASPERFVVGLDISDMAVKKAKQWSSS 130

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
           LPNA + +FL  DFF W P+E FDLIFDYTFFCA++P +R AWA+ +   LKPDGEL+TL
Sbjct: 131 LPNADYFTFLAEDFFKWIPSEQFDLIFDYTFFCALDPSLRVAWAETVNRLLKPDGELLTL 190

Query: 213 MFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHS 272
           ++ ISD  GGPPY  +V+DY++VL+P+G +++ + DN+LAI PRKG EK+GRWKR    S
Sbjct: 191 IYLISDQEGGPPYNNTVADYQKVLEPLGLKSVLMEDNELAIKPRKGCEKIGRWKRCAHQS 250

Query: 273 LL 274
            L
Sbjct: 251 SL 252

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2051824	226	HOL3 "HARMLESS TO OZONE LAYER	0.755	0.915	0.677	4.3e-77
UNIPROTKB|Q93V78	226	TMT1 "Thiocyanate methyltransf	0.817	0.991	0.598	7.5e-73
TAIR|locus:2051784	227	HOL2 "HARMLESS TO OZONE LAYER	0.715	0.863	0.632	1.4e-69
TAIR|locus:2051728	246	HOL1 "HARMLESS TO OZONE LAYER	0.766	0.853	0.608	2.7e-68
ASPGD|ASPL0000006893	283	AN6094 [Emericella nidulans (t	0.266	0.257	0.393	6.7e-18
UNIPROTKB|Q9KSN0	218	tpm "Thiopurine S-methyltransf	0.540	0.678	0.290	1.2e-12
TIGR_CMR|VC_1226	218	VC_1226 "thiopurine methyltran	0.540	0.678	0.290	1.2e-12
UNIPROTKB|O06426	241	MT0586 "Uncharacterized protei	0.551	0.626	0.310	2.4e-07
TIGR_CMR|SO_0582	218	SO_0582 "thiopurine S-methyltr	0.635	0.798	0.261	1.1e-05
UNIPROTKB|O69667	233	Rv3699 "Conserved protein" [My	0.470	0.553	0.257	0.0003

TAIR|locus:2051824 HOL3 "HARMLESS TO OZONE LAYER 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 141/208 (67%), Positives = 171/208 (82%)

Query:    68 QLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMA 127
             +LM   SSGGWEK WE G TPWD+G+P P+I HL ++G+LP GRALVPGCGTGYDVVAMA
Sbjct:    19 RLMSENSSGGWEKSWEAGATPWDLGKPTPVIAHLVETGSLPNGRALVPGCGTGYDVVAMA 78

Query:   128 SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187
             SP+R+VVGL+IS  A++++ +  S+LPNAK+ SFL  DFFTW P E FDLIFDYTFFCA 
Sbjct:    79 SPDRHVVGLDISKTAVERSTKKFSTLPNAKYFSFLSEDFFTWEPAEKFDLIFDYTFFCAF 138

Query:   188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247
             EP +R  WAQ+++  LKP GELITLMFPI +  GGPPY+VSVS+YE+VL P+GF+AISIV
Sbjct:   139 EPGVRPLWAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSEYEKVLIPLGFEAISIV 198

Query:   248 DNKLAIGPRKGREKLGRWKRSVR-HSLL 274
             DN+LA+GPRKG EKLGRWK+S   HS L
Sbjct:   199 DNELAVGPRKGMEKLGRWKKSSTFHSTL 226

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

UNIPROTKB|Q93V78 TMT1 "Thiocyanate methyltransferase 1" [Brassica oleracea (taxid:3712)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 134/224 (59%), Positives = 169/224 (75%)

Query:    44 MGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ 103
             M + +++  + N     P     + L      GGWEKCWE+G+TPWD G+  P++VHL  
Sbjct:     1 MAEEQQKAGHSNGENIIPPEEVAKFLPETVEEGGWEKCWEDGITPWDQGRATPLVVHLVD 60

Query:   104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
             S +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A++KA E   S P AK+ +F+K
Sbjct:    61 SSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALEKAAETYGSSPKAKYFTFVK 120

Query:   164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
              DFFTW P ELFDLIFDY  FCAIEPEMR AWA+ + + LKPDGELITLM+PI+DH GGP
Sbjct:   121 EDFFTWRPNELFDLIFDYVVFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHDGGP 180

Query:   224 PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267
             PYKV+VS YE+VL P+GF+A+SI +N  +I  RKG+EKLGRWK+
Sbjct:   181 PYKVAVSTYEDVLVPVGFKAVSIEENPYSIATRKGKEKLGRWKK 224

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

TAIR|locus:2051784 HOL2 "HARMLESS TO OZONE LAYER 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 124/196 (63%), Positives = 156/196 (79%)

Query:    72 IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER 131
             + + GGW+KCWE+G+TPWD G+  P+I+HL  S ALP GR LVPGCG G+DVVAMASPER
Sbjct:    30 VVAEGGWDKCWEDGVTPWDQGRATPLILHLLDSSALPLGRTLVPGCGGGHDVVAMASPER 89

Query:   132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEM 191
             +VVGL+ISD A+ KA E   S P A++ SF+K D FTW P ELFDLIFDY FFCAIEPEM
Sbjct:    90 FVVGLDISDKALNKANETYGSSPKAEYFSFVKEDVFTWRPNELFDLIFDYVFFCAIEPEM 149

Query:   192 RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251
             R AW + + + LKPDGELITLM+P++DH GG PYKV++S YE+VL P+GF+A+S+ +N  
Sbjct:   150 RPAWGKSMHELLKPDGELITLMYPMTDHEGGAPYKVALSSYEDVLVPVGFKAVSVEENPD 209

Query:   252 AIGPRKGREKLGRWKR 267
             +I  RKG+EKL RWK+
Sbjct:   210 SIPTRKGKEKLARWKK 225

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

TAIR|locus:2051728 HOL1 "HARMLESS TO OZONE LAYER 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 132/217 (60%), Positives = 164/217 (75%)

Query:    46 KNREEVENDNVIKSHPRVNKLQQLMH--IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ 103
             +N ++    NVI   P   ++   +H  +E  GGWEKCWEE +TPWD G+  P+IVHL  
Sbjct:     6 QNSDQSNGGNVI---PTPEEVATFLHKTVEE-GGWEKCWEEEITPWDQGRATPLIVHLVD 61

Query:   104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
             + +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K
Sbjct:    62 TSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVK 121

Query:   164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
              D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGP
Sbjct:   122 EDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP 181

Query:   224 PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
             PYKV VS +EEVL P+GF+A+S+ +N  AI P + RE
Sbjct:   182 PYKVDVSTFEEVLVPIGFKAVSVEENPHAI-PTRQRE 217

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

GO:0019762 "glucosinolate catabolic process" evidence=IDA

ASPGD|ASPL0000006893 AN6094 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
 Identities = 35/89 (39%), Positives = 49/89 (55%)

Query:   161 FLKADFFT--WCPTEL------------FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD 206
             FL+ DFFT  W   E             FDL++DYTF CA+ P  R  WA+++ D L+P 
Sbjct:   156 FLQGDFFTDTWIENESTGLDQGRTENGKFDLVYDYTFLCALHPAQRTRWAERMADLLRPG 215

Query:   207 GELITLMFPI-SDH-VGGPPYKVSVSDYE 233
             G L+ L FP+  D  + GPP+ V+   +E
Sbjct:   216 GLLVCLEFPMYKDPALPGPPWGVNGIHWE 244

GO:0005737 "cytoplasm" evidence=IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q9KSN0 tpm "Thiopurine S-methyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 169 (64.5 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/165 (29%), Positives = 78/165 (47%)

Query:    78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG--RALVPGCGTGYDVVAMASPERYVVG 135
             W   W      + +    P+++    S   PK   + LVP CG   D++ +A+    V G
Sbjct:     7 WHNKWAANQIGFHLEDVNPLLIRFW-SDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQG 65

Query:   136 LEISDIAIKK--AEELSSSLP---NAKF-------VSFLKADFFTWCPTELFDLIFDYTF 183
             +E+S IA++   AE   +      NA+        ++    DFFT  P E  DL++D   
Sbjct:    66 VELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAA 124

Query:   184 FCAIEPEMRAAWAQKIKDFLKPDGELITL-MFPISDHVGGPPYKV 227
               A+  EMRA +AQ++   LKP G ++ + M  +   + GPP+ V
Sbjct:   125 LVALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

GO:0008119 "thiopurine S-methyltransferase activity" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

TIGR_CMR|VC_1226 VC_1226 "thiopurine methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 169 (64.5 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/165 (29%), Positives = 78/165 (47%)

Query:    78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG--RALVPGCGTGYDVVAMASPERYVVG 135
             W   W      + +    P+++    S   PK   + LVP CG   D++ +A+    V G
Sbjct:     7 WHNKWAANQIGFHLEDVNPLLIRFW-SDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQG 65

Query:   136 LEISDIAIKK--AEELSSSLP---NAKF-------VSFLKADFFTWCPTELFDLIFDYTF 183
             +E+S IA++   AE   +      NA+        ++    DFFT  P E  DL++D   
Sbjct:    66 VELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAA 124

Query:   184 FCAIEPEMRAAWAQKIKDFLKPDGELITL-MFPISDHVGGPPYKV 227
               A+  EMRA +AQ++   LKP G ++ + M  +   + GPP+ V
Sbjct:   125 LVALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

GO:0008119 "thiopurine S-methyltransferase activity" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

UNIPROTKB|O06426 MT0586 "Uncharacterized protein Rv0560c/MT0586" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 138 (53.6 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 49/158 (31%), Positives = 67/158 (42%)

Query:    70 MHIESS-GGWEKCWEEGLTP-WDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMA 127
             +  ES+  G    + EG+ P W IG+P P +  L   G   +G  L  GCG     +A+A
Sbjct:    23 LEFESAYRGESVAFGEGVRPPWSIGEPQPELAALIVQGKF-RGDVLDVGCGEAAISLALA 81

Query:   128 SPERYVVGLEISDIAIKKA--EELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185
                   VGL++S  A++ A  E     L NA F     A  FT      FD I D T F 
Sbjct:    82 ERGHTTVGLDLSPAAVELARHEAAKRGLANASF-EVADASSFTGYDGR-FDTIVDSTLFH 139

Query:   186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
             ++  E R  + Q I     P      L+F  +    GP
Sbjct:   140 SMPVESREGYLQSIVRAAAPGASYFVLVFDRAAIPEGP 177

GO:0001666 "response to hypoxia" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010106 "cellular response to iron ion starvation" evidence=IEP

TIGR_CMR|SO_0582 SO_0582 "thiopurine S-methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 123 (48.4 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 53/203 (26%), Positives = 93/203 (45%)

Query:    76 GGWEKCWEE---GLTPWDIGQPAPIIVHLHQSGALPK-GRALVPGCGTGYDVVAMASPER 131
             G W + W++   G    D+  P  ++ + HQ  ALP   +  VP CG   D+  +A    
Sbjct:     4 GFWHEKWQQQQIGFHQQDVN-PF-LVTYWHQL-ALPADAKIFVPLCGKSLDMCFLAEQGH 60

Query:   132 YVVGLEISDIAIKKAEELSSSLP------------NAKFVSFLKADFFTWCPTELFDL-- 177
              V+G E++++A+++     + LP              + +S  + D FT   +   ++  
Sbjct:    61 QVIGCELNELAVQQFFS-DNQLPMQQSAEGEHQHYQTEQISLYQGDIFTLPQSITAEVSG 119

Query:   178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE---LITLMFPISDHVGGPPYKVSVSDYEE 234
              +D     A    MRA +A+++  +L P G    L+TL +P  + + GPP+ VS +  E 
Sbjct:   120 FYDRAALIAWPESMRAQYAKQLA-YLLPQGSVGLLVTLDYP-QEVLSGPPFAVSPTWVET 177

Query:   235 VL-QPMGFQAISIVDNKLAIGPR 256
              L +    Q ++  D  LA  PR
Sbjct:   178 HLSEDFEIQPLACQD-VLADNPR 199

GO:0008119 "thiopurine S-methyltransferase activity" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

UNIPROTKB|O69667 Rv3699 "Conserved protein" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 112 (44.5 bits), Expect = 0.00030, P = 0.00030
 Identities = 35/136 (25%), Positives = 60/136 (44%)

Query:    84 EGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAI 143
             EG  PW+IG+P P +  L  +G + +   L  GCG     +A+A+    VVG++++  A+
Sbjct:    19 EGPPPWNIGEPQPELATLIAAGKV-RSDVLDAGCGYAELSLALAADGYTVVGIDLTPTAV 77

Query:   144 KKAEELSSSLPNAKFVSFLKADF--FTWCPTEL---FDLIFDYTFFCAIEPEMRAAWAQK 198
               A + +         SF++AD   F   P      F  + D T F ++  + R  +   
Sbjct:    78 AAATKAAEER-GLTTASFVQADITEFAAYPAGSAGRFSTVIDSTLFHSLPVDSRDRYLSS 136

Query:   199 IKDFLKPDGELITLMF 214
             +     P      L+F
Sbjct:   137 VHRAAAPGASYYVLVF 152


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      274       274   0.00078  115 3  11 22  0.48    33
                                                     33  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  210 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.86u 0.09s 23.95t   Elapsed:  00:00:01
  Total cpu time:  23.86u 0.09s 23.95t   Elapsed:  00:00:01
  Start:  Sat May 11 06:44:06 2013   End:  Sat May 11 06:44:07 2013

GO:0005618 "cell wall" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AWU6	HOL3_ARATH	2, ., 1, ., 1, ., 9	0.6714	0.7627	0.9247	yes	no
Q93XC4	TMT2_BRAOL	2, ., 1, ., 1, ., n, 4	0.5937	0.8175	0.9911	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.67	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.921
4th Layer	2.1.1.8	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034749001 SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (262 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
pfam05724	203	pfam05724, TPMT, Thiopurine S-methyltransferase (T	1e-51
TIGR03840	213	TIGR03840, TMPT_Se_Te, thiopurine S-methyltransfer	1e-11
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-11
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	6e-10
PRK13255	218	PRK13255, PRK13255, thiopurine S-methyltransferase	7e-09
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	3e-08
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	6e-08
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-06
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	5e-05
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	6e-05
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	3e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	6e-04
COG4106	257	COG4106, Tam, Trans-aconitate methyltransferase [G	0.001
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	0.002
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	0.004

>gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT)

 Score =  167 bits (424), Expect = 1e-51
 Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 26/205 (12%)

Query: 88  PWDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKA 146
           P+      P++V H       P  R LVP CG   D+V +A    +VVG+EIS++A++K 
Sbjct: 1   PFHQEGVNPLLVRHWDALNLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVEISELAVEKF 60

Query: 147 EELSSSLPNAKFVSFLK-----------ADFFTWCPTEL--FDLIFDYTFFCAIEPEMRA 193
              +   P    +S  K            DFFT    +L  FDLI+D    CA+ PEMR 
Sbjct: 61  FAEAGLSPPITELSGFKEYRAGGIELLCGDFFTLPREDLGKFDLIYDRAALCALPPEMRP 120

Query: 194 AWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ--------A 243
            +A+++ + L P G   LITL +P +DH  GPP+ V  ++ E +    G++        A
Sbjct: 121 RYAKQMYELLPPGGRGLLITLDYPQTDHE-GPPFSVPAAELEALFGG-GWKVARLEREDA 178

Query: 244 ISIVDNKLAIGPRKGREKLGRWKRS 268
           +       A G  +  EK+    R 
Sbjct: 179 LEPEPRFKAAGVSRLDEKVYVLTRK 203

This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyzes S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines. Length = 203

>gnl|CDD|213871 TIGR03840, TMPT_Se_Te, thiopurine S-methyltransferase, Se/Te detoxification family

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 20/179 (11%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W + W+EG   +   +  P++V H    G     R  VP CG   D+  +A     V+G+
Sbjct: 3   WHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGV 62

Query: 137 EISDIAIKK--AE-ELS---SSLPNAKF-----VSFLKADFFTWCPTEL--FDLIFDYTF 183
           E+S+IA+++  AE  L+   +            +     DFF     +L   D ++D   
Sbjct: 63  ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAA 122

Query: 184 FCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240
             A+  EMR  +A  +   L P     LITL +     + GPP+  SVS   EV    G
Sbjct: 123 LIALPEEMRQRYAAHLLALLPPGARQLLITLDYD-QSEMAGPPF--SVSP-AEVEALYG 177

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. Length = 213

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW 169
           R L  GCGTG   +A+AS P   V G++IS +A++ A +  ++   A  V  LK D    
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKA-AAALLADNVEVLKGDAEEL 59

Query: 170 --CPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
                E FD+I  D         E  A + ++ +  LKP G L+ 
Sbjct: 60  PPEADESFDVIISDPPLHH--LVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 116 GCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--- 169
           GCGTGY    +A    P   VVG++IS+ AI+KA+E +  L   + V F++ D       
Sbjct: 11  GCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLG-YENVEFIQGDIEELPQL 69

Query: 170 -CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
                 FD++        + P+      ++I   LKP G LI  
Sbjct: 70  QLEDNSFDVVISNEVLNHL-PDPDKVL-EEIIRVLKPGGVLIVS 111

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|183921 PRK13255, PRK13255, thiopurine S-methyltransferase; Reviewed

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 20/179 (11%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W + W E    +   +  P++  +          R LVP CG   D++ +A     V+G+
Sbjct: 6   WHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGV 65

Query: 137 EISDIAIKK--AE-ELSSSLP-NAKF-------VSFLKADFFTWCPTEL--FDLIFDYTF 183
           E+S++A+++  AE  L+     + +F       ++    DFF     +L   D ++D   
Sbjct: 66  ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAA 125

Query: 184 FCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240
             A+  EMR  + Q++   L       L+TL +P  + + GPP+  SVSD EEV     
Sbjct: 126 LIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE-LAGPPF--SVSD-EEVEALYA 180

Length = 218

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 116 GCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCP 171
           GCGTG  +  +  A P     G++IS  A++ A E  ++L   +A  V     D      
Sbjct: 4   GCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID-LD 62

Query: 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
              FD++        +      A  + ++  LKP G L
Sbjct: 63  PGSFDVVVASNVLHHLAD--PRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 116 GCGTGYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE- 173
           GCGTG  + A+A +    V G++IS  A++ A+E          V F+ AD       E 
Sbjct: 5   GCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLPFEEG 62

Query: 174 LFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDG 207
            FDL+         + P+   A  ++    L+P G
Sbjct: 63  SFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 110 GRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
            R L PG G+G      A A P+  VVG+E+   A   A    +    A  V  +  D  
Sbjct: 2   DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61

Query: 168 T--WCPTELFDLIF---DYTFFCAIEPEMRAAWAQ---KIKDFLKPDG 207
                P   FDL+     Y        + R  + +        LKP G
Sbjct: 62  ELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGG 109

This family contains methyltransferase domains. Length = 117

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
           P  R L  GCGTG   + +A   P   V G+++S   ++ A E +      + ++F++ D
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-ITFVQGD 59

Query: 166 FFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                   E FD +F       +   + A         LKP G L+
Sbjct: 60  APDALDLLEGFDAVFIGGGGGDLLELLDALA-----SLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 17/100 (17%)

Query: 116 GCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWC 170
           GCGTG    A+A      V G+++S   +  A +            F+  D     F   
Sbjct: 4   GCGTGLLAEALARRGGARVTGVDLSPEMLALARK-------RAPRKFVVGDAEDLPF--- 53

Query: 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
           P E FD++        + P+   A  ++I   LKP G+L+
Sbjct: 54  PDESFDVVVSSLVLHHL-PDPERAL-REIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 36/167 (21%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP-NAKFVSFLKADF 166
              R L  G G+G   +  A   + VVG++I+  A++ A+  +         V  +++D 
Sbjct: 23  KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL 82

Query: 167 FTWCPTELFDLI-FD--Y---TFFCAIEPEMRAAW-------------AQKIKDFLKPDG 207
           F     + FD+I F+  Y         +  +  A                ++  +LKP G
Sbjct: 83  FEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142

Query: 208 ELITLMFPISDHVGGPPYKVSVSDYEEVLQPM---GFQAISIVDNKL 251
            ++ L    S          S++  +EVL+ +   GF+A  + + K 
Sbjct: 143 RILLL---QS----------SLTGEDEVLEYLEKLGFEAEVVAEEKF 176

Length = 188

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 27/121 (22%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173
           G G+G   +A+A   P+  V  ++IS  A+  A + ++ L     V FL++D+F   P  
Sbjct: 95  GTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL-GLDNVEFLQSDWFEPLPGG 153

Query: 174 LFDLI------FDYTFFCAIEPEMR------------------AAWAQKIKDFLKPDGEL 209
            FDLI              ++PE+R                       +    LKP G L
Sbjct: 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWL 213

Query: 210 I 210
           +
Sbjct: 214 L 214

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 41.0 bits (93), Expect = 3e-04
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 5/160 (3%)

Query: 87  TPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVA--MASPERYVVGLEISDIAIK 144
                     ++V             L  GCGTG   +   +     YVVG+++S   + 
Sbjct: 27  LLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLA 86

Query: 145 KAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF-CAIEPEMRAAWAQKIKDFL 203
            A   +        V F+ AD             FD       +     A   +++   L
Sbjct: 87  LARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVL 145

Query: 204 KPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA 243
           KP G L+ L   + D +        +   + VL+      
Sbjct: 146 KPGGRLV-LSDLLRDGLLEGRLAALLGFGDPVLERGDILL 184

Length = 257

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 20/115 (17%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK 157
           ++        P GR L  GCGTG  +  +      V G++ S  A+       +  P   
Sbjct: 12  LLARLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIFSLFDAPDP--- 68

Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELI 210
                            +DLI   T F  +E  P+  A   Q++++ LKP G L+
Sbjct: 69  -----------AVLAGKYDLI---TAFEVLEHLPDPPALL-QQLRELLKPGGVLL 108

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173
           GCG G     +A   P+  + G++ S   + KA +    LP+A   +F +AD  TW P +
Sbjct: 38  GCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR---LPDA---TFEEADLRTWKPEQ 91

Query: 174 LFDLIF 179
             DL+F
Sbjct: 92  PTDLLF 97

Length = 257

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 35/132 (26%)

Query: 106 ALPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSF 161
              KGR L  G G G   + +     + +  +VG+EI + A + A+   +  P  + +  
Sbjct: 42  VPKKGRILDLGAGNG--ALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQV 99

Query: 162 LKADFFTWCPT---ELFDLI------FD---------------YTFFCAIEPEMRAAWAQ 197
           ++AD   +        FDLI      F                +     +E        +
Sbjct: 100 IEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLE-----DLIR 154

Query: 198 KIKDFLKPDGEL 209
                LKP G L
Sbjct: 155 AAAKLLKPGGRL 166

Length = 248

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
               G+ L  GCG G    A+A  SP+  V  ++I+  A++ A   + +    +      
Sbjct: 29  KPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARA-NLAANGLENGEVFW 87

Query: 164 ADFFTWCPTELFDLIFDYT---FFCAIEPEMRAAWA--QKIKDFLKPDGEL 209
           +D ++      FDLI   +   F      +   A          LKP GEL
Sbjct: 88  SDLYSAVEPGKFDLII--SNPPFHAGKATDYDVAQRFIAGAARHLKPGGEL 136

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.92
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.91
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.91
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.9
PRK11207	197	tellurite resistance protein TehB; Provisional	99.88
PLN02244	340	tocopherol O-methyltransferase	99.87
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.85
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.84
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.84
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.84
KOG2361	264	consensus Predicted methyltransferase [General fun	99.84
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.83
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.83
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.82
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.82
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.82
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.82
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.81
PRK12335	287	tellurite resistance protein TehB; Provisional	99.8
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.8
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.79
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.79
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.78
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.78
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.78
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.77
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.77
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.76
PLN02336	475	phosphoethanolamine N-methyltransferase	99.76
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.75
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.74
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.73
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.73
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.73
KOG1271	227	consensus Methyltransferases [General function pre	99.73
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.73
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.73
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.72
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.72
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.72
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.72
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.72
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.71
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.71
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.7
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.7
PLN02490	340	MPBQ/MSBQ methyltransferase	99.69
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.69
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.68
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.67
PRK14968	188	putative methyltransferase; Provisional	99.67
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.66
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.66
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.66
PLN02336	475	phosphoethanolamine N-methyltransferase	99.65
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.65
PRK08317	241	hypothetical protein; Provisional	99.65
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.65
PRK14967	223	putative methyltransferase; Provisional	99.65
PLN03075	296	nicotianamine synthase; Provisional	99.64
COG4123	248	Predicted O-methyltransferase [General function pr	99.64
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.64
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.64
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.63
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.63
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.63
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.62
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.62
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.61
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.61
PRK06202	232	hypothetical protein; Provisional	99.61
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.61
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.6
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.6
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.59
PRK04266	226	fibrillarin; Provisional	99.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.58
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.58
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.57
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.57
PRK05785	226	hypothetical protein; Provisional	99.57
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.57
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.57
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.57
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.56
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.56
TIGR03438	301	probable methyltransferase. This model represents	99.56
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.56
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.55
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.54
COG2890	280	HemK Methylase of polypeptide chain release factor	99.53
PHA03411	279	putative methyltransferase; Provisional	99.53
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.53
PRK06922	677	hypothetical protein; Provisional	99.53
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.53
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.52
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.52
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.51
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.51
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.5
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.5
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.5
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.49
PTZ00146	293	fibrillarin; Provisional	99.49
KOG4300	252	consensus Predicted methyltransferase [General fun	99.48
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.48
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.47
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.47
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.46
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.45
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.4
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.39
PRK07402	196	precorrin-6B methylase; Provisional	99.39
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.39
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.39
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.38
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.38
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.37
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.37
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.36
PLN02672	1082	methionine S-methyltransferase	99.35
PHA03412	241	putative methyltransferase; Provisional	99.35
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.35
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.34
PLN02476	278	O-methyltransferase	99.34
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.33
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.33
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.33
PRK04457	262	spermidine synthase; Provisional	99.33
COG4122	219	Predicted O-methyltransferase [General function pr	99.32
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.3
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.3
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.3
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.3
PRK00811	283	spermidine synthase; Provisional	99.29
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.28
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.28
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.27
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.26
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.26
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.25
COG2521	287	Predicted archaeal methyltransferase [General func	99.25
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.24
TIGR00438	188	rrmJ cell division protein FtsJ.	99.24
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.24
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.23
PRK01581	374	speE spermidine synthase; Validated	99.23
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.23
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.22
PRK03612	521	spermidine synthase; Provisional	99.21
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.21
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.2
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.2
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.17
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.17
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.16
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.15
PLN02366	308	spermidine synthase	99.15
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.15
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.14
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.14
KOG3010	261	consensus Methyltransferase [General function pred	99.14
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.13
KOG2899	288	consensus Predicted methyltransferase [General fun	99.13
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.12
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.12
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.12
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.1
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.09
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.09
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.07
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.06
KOG2904	328	consensus Predicted methyltransferase [General fun	99.06
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.04
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.03
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.02
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	99.01
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.96
KOG2940	325	consensus Predicted methyltransferase [General fun	98.96
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.95
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.95
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.95
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.94
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.94
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.93
PRK04148	134	hypothetical protein; Provisional	98.93
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.93
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.92
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.9
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.89
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.89
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.88
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.88
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.86
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.85
PLN02823	336	spermine synthase	98.84
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.83
COG2520	341	Predicted methyltransferase [General function pred	98.82
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.8
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.77
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.76
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.76
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.75
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.69
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.69
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.69
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.66
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.66
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.65
KOG2730	263	consensus Methylase [General function prediction o	98.64
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.63
PRK00536	262	speE spermidine synthase; Provisional	98.63
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.62
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.6
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.58
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.57
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.57
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.55
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.53
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.5
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.5
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.49
PF13679	141	Methyltransf_32: Methyltransferase domain	98.46
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.44
COG3897	218	Predicted methyltransferase [General function pred	98.42
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.42
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.42
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	98.38
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.36
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.34
KOG1331	293	consensus Predicted methyltransferase [General fun	98.34
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.33
COG4076	252	Predicted RNA methylase [General function predicti	98.29
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.29
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.29
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.28
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.24
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.23
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.21
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.19
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.17
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.16
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.15
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.14
COG4798	238	Predicted methyltransferase [General function pred	98.13
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.11
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.1
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.07
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.05
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.04
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.0
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.98
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.93
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.92
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.9
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.85
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.84
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.74
KOG3115	249	consensus Methyltransferase-like protein [General	97.66
PRK10742	250	putative methyltransferase; Provisional	97.58
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.56
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.53
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	97.48
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.42
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.37
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.34
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.32
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.31
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.27
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.26
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.22
PHA01634	156	hypothetical protein	97.21
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.11
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.1
PRK11524	284	putative methyltransferase; Provisional	97.1
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.07
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	97.05
COG0286	489	HsdM Type I restriction-modification system methyl	97.04
COG1568	354	Predicted methyltransferases [General function pre	97.02
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.93
PRK13699	227	putative methylase; Provisional	96.86
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.86
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.81
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	96.79
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.72
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.72
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.69
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.52
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	96.46
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.45
COG4301	321	Uncharacterized conserved protein [Function unknow	96.42
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.25
PRK13699	227	putative methylase; Provisional	96.22
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.2
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.14
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	95.97
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.97
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.89
KOG1227	351	consensus Putative methyltransferase [General func	95.88
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.87
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	95.73
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.67
COG1565	370	Uncharacterized conserved protein [Function unknow	95.62
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	95.49
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.45
KOG2912	419	consensus Predicted DNA methylase [Function unknow	95.37
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.35
PTZ00357	1072	methyltransferase; Provisional	95.25
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.21
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	95.1
KOG2671	421	consensus Putative RNA methylase [Replication, rec	95.05
KOG2920	282	consensus Predicted methyltransferase [General fun	94.98
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	94.96
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	94.86
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.86
COG1255	129	Uncharacterized protein conserved in archaea [Func	94.73
COG3315	297	O-Methyltransferase involved in polyketide biosynt	94.68
COG2933	358	Predicted SAM-dependent methyltransferase [General	94.32
PRK10458	467	DNA cytosine methylase; Provisional	94.27
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.23
PRK11524	284	putative methyltransferase; Provisional	94.14
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.13
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	94.11
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.95
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.76
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	93.35
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.33
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	93.28
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	93.19
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.16
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	93.02
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.86
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.8
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	91.68
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	91.67
PRK09496	453	trkA potassium transporter peripheral membrane com	91.6
PRK10669	558	putative cation:proton antiport protein; Provision	91.26
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.7
TIGR00497	501	hsdM type I restriction system adenine methylase (	90.68
COG0863	302	DNA modification methylase [DNA replication, recom	90.32
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	89.87
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	89.87
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	89.22
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	89.2
KOG3924	419	consensus Putative protein methyltransferase invol	88.78
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	88.63
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	88.43
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	88.43
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	88.36
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	88.02
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	87.87
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	87.62
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.53
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	87.49
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	87.43
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	87.08
KOG2352	482	consensus Predicted spermine/spermidine synthase [	86.91
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	86.8
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	86.75
PRK05867	253	short chain dehydrogenase; Provisional	86.58
PRK09496	453	trkA potassium transporter peripheral membrane com	86.2
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	86.14
PF07109	97	Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl	85.78
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	85.73
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	85.43
PRK05872	296	short chain dehydrogenase; Provisional	85.19
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	85.16
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.01
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	84.98
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	84.55
PRK07417	279	arogenate dehydrogenase; Reviewed	84.5
PRK08213	259	gluconate 5-dehydrogenase; Provisional	84.34
PRK08324	681	short chain dehydrogenase; Validated	84.31
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	84.29
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	84.02
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	84.01
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	83.94
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	83.53
PRK12939	250	short chain dehydrogenase; Provisional	83.08
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	83.05
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	83.0
PF14740	289	DUF4471: Domain of unknown function (DUF4471)	82.71
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	82.5
PRK06124	256	gluconate 5-dehydrogenase; Provisional	82.49
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	82.43
PRK05854	313	short chain dehydrogenase; Provisional	82.39
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	82.1
PF06016	1289	Reovirus_L2: Reovirus core-spike protein lambda-2	82.04
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	81.99
PRK06139	330	short chain dehydrogenase; Provisional	81.86
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	81.8
PRK07063	260	short chain dehydrogenase; Provisional	81.78
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	81.7
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	81.63
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	81.63
PRK06701	290	short chain dehydrogenase; Provisional	81.07
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	81.04
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	80.93
KOG4174	282	consensus Uncharacterized conserved protein [Funct	80.92
PRK07806	248	short chain dehydrogenase; Provisional	80.84
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	80.81
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	80.68
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	80.28

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.92  E-value=3.6e-23  Score=167.90  Aligned_cols=175  Identities=22%  Similarity=0.412  Sum_probs=143.6

Q ss_pred             chhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC--
Q 024008           77 GWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--  153 (274)
Q Consensus        77 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~--  153 (274)
                      +|+++|..+..+|....+.+.+.+++.... .++.+|||+|||.|..+.+|++.|++|+|+|+|+.+++.+.......  
T Consensus         2 ~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~   81 (213)
T TIGR03840         2 FWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPT   81 (213)
T ss_pred             hHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcc
Confidence            799999999999998999999999887643 35579999999999999999999999999999999999864422110  


Q ss_pred             ---------CCCcceEEEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-CCCC
Q 024008          154 ---------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-DHVG  221 (274)
Q Consensus       154 ---------~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~-~~~~  221 (274)
                               ....++++.++|+++..+  .++||.|+...++++++++.+..+++.+.++|+|||.+++..+... ....
T Consensus        82 ~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~  161 (213)
T TIGR03840        82 VTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA  161 (213)
T ss_pred             eeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC
Confidence                     012469999999998543  3679999999999999999999999999999999998777665432 3345


Q ss_pred             CCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          222 GPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      ++++.++.+++.+++.. +|.+..+......
T Consensus       162 gpp~~~~~~eL~~~f~~-~~~i~~~~~~~~~  191 (213)
T TIGR03840       162 GPPFSVSPAEVEALYGG-HYEIELLESRDVL  191 (213)
T ss_pred             CcCCCCCHHHHHHHhcC-CceEEEEeecccc
Confidence            77888999999999975 6888888775543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.91  E-value=1.9e-22  Score=164.33  Aligned_cols=178  Identities=20%  Similarity=0.337  Sum_probs=143.8

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      ..+|+++|..+..+|....+++.+.+++... ..++.+|||+|||.|..+.+|++.|++|+|+|+|+.+++.+.......
T Consensus         3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~   82 (218)
T PRK13255          3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLT   82 (218)
T ss_pred             HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCC
Confidence            4689999999999998899999999988754 234579999999999999999999999999999999999875322110


Q ss_pred             -----------CCCcceEEEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE-EEccCCCC
Q 024008          154 -----------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-LMFPISDH  219 (274)
Q Consensus       154 -----------~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~-~~~~~~~~  219 (274)
                                 ....++++.++|++++.+  ...||+|+...++++++++.+..++..+.++|+|||.+++ ........
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~  162 (218)
T PRK13255         83 PQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE  162 (218)
T ss_pred             ccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc
Confidence                       013579999999998543  2589999999999999999999999999999999986444 33223345


Q ss_pred             CCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          220 VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      ..++++.++.+++.+++.. +|.+..+.......
T Consensus       163 ~~gPp~~~~~~el~~~~~~-~~~i~~~~~~~~~~  195 (218)
T PRK13255        163 LAGPPFSVSDEEVEALYAG-CFEIELLERQDVLE  195 (218)
T ss_pred             CCCCCCCCCHHHHHHHhcC-CceEEEeeeccccc
Confidence            5778889999999999964 48888888765544

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.91  E-value=1.2e-22  Score=164.73  Aligned_cols=176  Identities=17%  Similarity=0.310  Sum_probs=148.8

Q ss_pred             ccccchhHhhhcCCCCccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhh
Q 024008           73 ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus        73 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~  151 (274)
                      ....+|+++|..+..+|+...+++.+.+++..... ++.+||+.|||.|..+.+|+..|++|+|+|+|+.+++.+.+...
T Consensus         7 ~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~   86 (226)
T PRK13256          7 NNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNT   86 (226)
T ss_pred             CCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcC
Confidence            34578999999999999999999999888877644 45799999999999999999999999999999999999866321


Q ss_pred             cC-----------CCCcceEEEEcccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          152 SL-----------PNAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       152 ~~-----------~~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      ..           ....++++.++|++++.+    .++||+|+...+|++++++.+.++++++.++|+|||.+++..+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256         87 INYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             CCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence            00           012469999999998643    358999999999999999999999999999999999998888765


Q ss_pred             CCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          217 SDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      .....+|||..+.+++.+++.. +|.+..+...
T Consensus       167 ~~~~~GPPf~v~~~e~~~lf~~-~~~i~~l~~~  198 (226)
T PRK13256        167 DKKSQTPPYSVTQAELIKNFSA-KIKFELIDSK  198 (226)
T ss_pred             CCCCCCCCCcCCHHHHHHhccC-CceEEEeeec
Confidence            5556899999999999999976 6777766653

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.90  E-value=9.4e-23  Score=165.68  Aligned_cols=174  Identities=42%  Similarity=0.784  Sum_probs=134.9

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-
Q 024008           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS-  152 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-  152 (274)
                      ..+|++.|..+..+|+...+.+.+.+++..... ++.+||..|||.|..+.+|++.|.+|+|+|+|+.+++.+.+.... 
T Consensus         3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~   82 (218)
T PF05724_consen    3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLE   82 (218)
T ss_dssp             HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTE
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccC
Confidence            478999999999999999999999999987534 446999999999999999999999999999999999998543221 


Q ss_pred             ------CC----CCcceEEEEcccCCCCCC--CCeeEEEecccccccChhHHHHHHHHHHhcccCCcE--EEEEEccCCC
Q 024008          153 ------LP----NAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISD  218 (274)
Q Consensus       153 ------~~----~~~~v~~~~~d~~~~~~~--~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~--l~~~~~~~~~  218 (274)
                            ..    ...+|++.++|+++..+.  ++||+|+-..+++.++++.+.++.+++.++|+|||.  ++...+.. .
T Consensus        83 ~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~-~  161 (218)
T PF05724_consen   83 PTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ-G  161 (218)
T ss_dssp             EECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C-S
T ss_pred             CCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC-c
Confidence                  00    124689999999995443  479999999999999999999999999999999999  44444433 3


Q ss_pred             CCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          219 HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ...||||.++.+++.+++. .+|++..++...
T Consensus       162 ~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~~  192 (218)
T PF05724_consen  162 EMEGPPFSVTEEEVRELFG-PGFEIEELEEED  192 (218)
T ss_dssp             CSSSSS----HHHHHHHHT-TTEEEEEEEEEE
T ss_pred             CCCCcCCCCCHHHHHHHhc-CCcEEEEEeccc
Confidence            3448999999999999999 699999988833

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.88  E-value=1.8e-21  Score=156.82  Aligned_cols=153  Identities=14%  Similarity=0.244  Sum_probs=125.6

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024008           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  171 (274)
                      ..+.+.+.+.+.  ..++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....++ .++++...|+.....
T Consensus        16 ~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~   92 (197)
T PRK11207         16 TRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF   92 (197)
T ss_pred             CCChHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc
Confidence            455777777776  34568999999999999999999999999999999999999998877765 358899999977544


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE-EEccCCCC--CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-LMFPISDH--VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +++||+|+++.++++++++.+..++.++.++|+|||++++ ..+...+.  ..++++.++.+++.++++  ||.++...+
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~  170 (197)
T PRK11207         93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNE  170 (197)
T ss_pred             CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeC
Confidence            5789999999999998877889999999999999999654 33333221  235677789999999998  899988865


Q ss_pred             c
Q 024008          249 N  249 (274)
Q Consensus       249 ~  249 (274)
                      .
T Consensus       171 ~  171 (197)
T PRK11207        171 D  171 (197)
T ss_pred             C
Confidence            4

>PLN02244 tocopherol O-methyltransferase

Probab=99.87  E-value=1.3e-20  Score=163.96  Aligned_cols=191  Identities=23%  Similarity=0.310  Sum_probs=142.2

Q ss_pred             hhHHHHHHHHhhcccccchhHhhhcCCC--CccCC--------CccHHHHHHHhcCC------CCCCeEEEEcCCcchhH
Q 024008           60 HPRVNKLQQLMHIESSGGWEKCWEEGLT--PWDIG--------QPAPIIVHLHQSGA------LPKGRALVPGCGTGYDV  123 (274)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~------~~~~~vLDiG~G~G~~~  123 (274)
                      ....+.+..+|+ .....|+..|.....  .|...        .....+..++....      .++.+|||||||+|..+
T Consensus        55 ~~~~~~i~~~Yd-~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~  133 (340)
T PLN02244         55 ADLKEGIAEFYD-ESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSS  133 (340)
T ss_pred             hhHHHHHHHHHc-cchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHH
Confidence            334455666666 556788888765443  12221        01223444554443      34579999999999999


Q ss_pred             HHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHh
Q 024008          124 VAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKD  201 (274)
Q Consensus       124 ~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~  201 (274)
                      ..+++. +.+|+|+|+++.+++.++++....+..++++|+.+|+.+ +.++++||+|++..+++|+++  ...++.++.+
T Consensus       134 ~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~r  211 (340)
T PLN02244        134 RYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFVQELAR  211 (340)
T ss_pred             HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHHHHHHH
Confidence            999884 789999999999999999998877776789999999987 456789999999999999853  4688999999


Q ss_pred             cccCCcEEEEEEccCCCCCC--------------------CCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          202 FLKPDGELITLMFPISDHVG--------------------GPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       202 ~L~~gG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      +|+|||.+++..+.......                    ..+...+.+++.++++++||..+.+.++...+
T Consensus       212 vLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v  283 (340)
T PLN02244        212 VAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHV  283 (340)
T ss_pred             HcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHH
Confidence            99999999998764322110                    01222478999999999999999998876443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.85  E-value=2.1e-20  Score=156.87  Aligned_cols=149  Identities=17%  Similarity=0.196  Sum_probs=121.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCe
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~f  175 (274)
                      +..++.....++.+|||+|||+|..+..+++.+.+|+++|+++++++.|+++....++.++++++++|+.+.  .++++|
T Consensus        34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f  113 (255)
T PRK11036         34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV  113 (255)
T ss_pred             HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence            445666555556899999999999999999999999999999999999999998887767899999999763  346789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------------CCCCCcccCHHHH
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------------VGGPPYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~  232 (274)
                      |+|++..+++++++  ...++.++.++|+|||++++..+.....                       ...+.+.++++++
T Consensus       114 D~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l  191 (255)
T PRK11036        114 DLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV  191 (255)
T ss_pred             CEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence            99999999999853  3578999999999999998876543210                       1112345789999


Q ss_pred             HHHHhcCCCcEEEEee
Q 024008          233 EEVLQPMGFQAISIVD  248 (274)
Q Consensus       233 ~~~~~~~Gf~~~~~~~  248 (274)
                      .++++++||+++...-
T Consensus       192 ~~~l~~aGf~~~~~~g  207 (255)
T PRK11036        192 YQWLEEAGWQIMGKTG  207 (255)
T ss_pred             HHHHHHCCCeEeeeee
Confidence            9999999999986554

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.84  E-value=9.8e-21  Score=155.65  Aligned_cols=142  Identities=24%  Similarity=0.283  Sum_probs=84.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~  181 (274)
                      ..++.+|||+|||||..+..+++   +..+|+|+|+|+.+++.|+++....+.. +++++++|+.+ +.++++||+|++.
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~  123 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCS  123 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHH
Confidence            45678999999999999998877   3469999999999999999999877654 79999999998 6678999999999


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------------------CCC-----------CCcccCH
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------------------VGG-----------PPYKVSV  229 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---------------------~~~-----------~~~~~~~  229 (274)
                      ..++.++  +....+++++++|||||++++.+++....                     ..+           ...+.+.
T Consensus       124 fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~  201 (233)
T PF01209_consen  124 FGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSP  201 (233)
T ss_dssp             S-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------------
T ss_pred             hhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccc
Confidence            9999886  35679999999999999999988876533                     000           0112479


Q ss_pred             HHHHHHHhcCCCcEEEEeecc
Q 024008          230 SDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       230 ~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +++.++++++||+.++.....
T Consensus       202 ~~~~~~l~~~Gf~~v~~~~~~  222 (233)
T PF01209_consen  202 EELKELLEEAGFKNVEYRPLT  222 (233)
T ss_dssp             ---------------------
T ss_pred             ccccccccccccccccccccc
Confidence            999999999999988776544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.84  E-value=9.4e-20  Score=143.88  Aligned_cols=166  Identities=20%  Similarity=0.275  Sum_probs=120.9

Q ss_pred             cchhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC
Q 024008           76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN  155 (274)
Q Consensus        76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~  155 (274)
                      .+|...|.....       +..+.+.++  ..+++++||+|||.|+++.+|++.|+.|+++|.|+.+++.+++.+...++
T Consensus         7 ~y~~kky~~~~~-------hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l   77 (192)
T PF03848_consen    7 DYFHKKYGLTPT-------HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL   77 (192)
T ss_dssp             THHHHHHTB-----------HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-
T ss_pred             HHHHHhhCCCCC-------cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc
Confidence            455566654322       344455444  34678999999999999999999999999999999999999998887775


Q ss_pred             CcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---CCCCCcccCHHHH
Q 024008          156 AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---VGGPPYKVSVSDY  232 (274)
Q Consensus       156 ~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~  232 (274)
                      +  ++....|+.....++.||+|++..++++++++.++.+++.+...++|||++++..+-....   ....++.+.+.++
T Consensus        78 ~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL  155 (192)
T PF03848_consen   78 D--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGEL  155 (192)
T ss_dssp             T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHH
T ss_pred             e--eEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHH
Confidence            4  8999999988666688999999999999999999999999999999999988865432222   2234566788999


Q ss_pred             HHHHhcCCCcEEEEeecccccC
Q 024008          233 EEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       233 ~~~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      ...+.  ||+++...+..-...
T Consensus       156 ~~~y~--dW~il~y~E~~g~~h  175 (192)
T PF03848_consen  156 REYYA--DWEILKYNEDVGELH  175 (192)
T ss_dssp             HHHTT--TSEEEEEEEEEEEEE
T ss_pred             HHHhC--CCeEEEEEcccccee
Confidence            99988  699988777554443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.84  E-value=1.7e-19  Score=151.64  Aligned_cols=172  Identities=16%  Similarity=0.215  Sum_probs=130.7

Q ss_pred             ccccchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHh
Q 024008           73 ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELS  150 (274)
Q Consensus        73 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~  150 (274)
                      ..-..|+..|+.+...   ..-.+....++.... .++.+|||+|||+|..+..++. .+.+|+++|+++.+++.|+++.
T Consensus        19 ~~~~~~e~~~g~~~~~---~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~   95 (263)
T PTZ00098         19 EGIKAYEFIFGEDYIS---SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRN   95 (263)
T ss_pred             ccchhHHHHhCCCCCC---CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHc
Confidence            3345677777655432   112333555665553 4557999999999999988876 5779999999999999999987


Q ss_pred             hcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------
Q 024008          151 SSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------  221 (274)
Q Consensus       151 ~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~--------  221 (274)
                      ...   +++.+..+|+.. ..++++||+|++..+++|++..+...+++++.++|+|||.+++.++.......        
T Consensus        96 ~~~---~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~  172 (263)
T PTZ00098         96 SDK---NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAY  172 (263)
T ss_pred             CcC---CceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHH
Confidence            542   579999999987 45678999999999888887667789999999999999999998764432110        


Q ss_pred             ---CCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          222 ---GPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       222 ---~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                         ......+.+++.++++++||+.+...+..
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~  204 (263)
T PTZ00098        173 IKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS  204 (263)
T ss_pred             HHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence               01123478999999999999999887744

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.84  E-value=1.2e-20  Score=150.13  Aligned_cols=203  Identities=18%  Similarity=0.199  Sum_probs=155.5

Q ss_pred             hhcccccchhHhhhcCCCCccCCC--ccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHH
Q 024008           70 MHIESSGGWEKCWEEGLTPWDIGQ--PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAI  143 (274)
Q Consensus        70 ~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~  143 (274)
                      +......+|+.+|..+...|....  .....-.++........+|||+|||.|.....+.+    ++..++++|.||.++
T Consensus        31 y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai  110 (264)
T KOG2361|consen   31 YEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI  110 (264)
T ss_pred             hhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH
Confidence            344666899999998776542111  01122223222222334899999999999998887    347999999999999


Q ss_pred             HHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 024008          144 KKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (274)
Q Consensus       144 ~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~  218 (274)
                      +..+++.....  .++.-...|+..     ....+.+|+|++..++..++++....++..+.++|||||.+++.+++..+
T Consensus       111 ~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D  188 (264)
T KOG2361|consen  111 ELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD  188 (264)
T ss_pred             HHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence            99999876654  456666666654     34567999999999999999999999999999999999999999988764


Q ss_pred             C-------------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC-CccchhHHHHhhhhhcccCC
Q 024008          219 H-------------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG-PRKGREKLGRWKRSVRHSLL  274 (274)
Q Consensus       219 ~-------------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  274 (274)
                      .                   .+...|+++.+++.++|+++||..++.....+-.- ...+..+...|.|..++.|+
T Consensus       189 laqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~  264 (264)
T KOG2361|consen  189 LAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL  264 (264)
T ss_pred             HHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence            3                   22335889999999999999999999887666444 44467888899999998885

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.83  E-value=5.8e-20  Score=149.69  Aligned_cols=138  Identities=22%  Similarity=0.286  Sum_probs=117.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      ++.+|||+|||||..+..+++.  ..+|+++|+|+.|++.|+++....+..+ ++|+.+|+.+ ++++++||+|.+...+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehh
Confidence            6789999999999999999984  3699999999999999999999887766 9999999999 7889999999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------------CC-----------CcccCHHH
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------------GP-----------PYKVSVSD  231 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~----------------------~~-----------~~~~~~~~  231 (274)
                      .+++  +.+.+|++++|+|||||++++.+++......                      +.           ..+.+.++
T Consensus       130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~  207 (238)
T COG2226         130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEE  207 (238)
T ss_pred             hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHH
Confidence            9995  5678999999999999999999887653300                      00           11248999


Q ss_pred             HHHHHhcCCCcEEEEee
Q 024008          232 YEEVLQPMGFQAISIVD  248 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~  248 (274)
                      +.++++++||..+....
T Consensus       208 l~~~~~~~gf~~i~~~~  224 (238)
T COG2226         208 LKQMIEKAGFEEVRYEN  224 (238)
T ss_pred             HHHHHHhcCceEEeeEe
Confidence            99999999999877443

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.83  E-value=2.7e-19  Score=143.93  Aligned_cols=153  Identities=10%  Similarity=0.119  Sum_probs=119.6

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  174 (274)
                      ...+...+.  ..++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.++++....++  ++.+...|+.....+++
T Consensus        19 ~~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~   94 (195)
T TIGR00477        19 HSAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNED   94 (195)
T ss_pred             hHHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCC
Confidence            444445444  34568999999999999999999999999999999999999988876654  37778888765444568


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CC--CCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VG--GPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      ||+|+++.++++++.+....+++.+.++|+|||++++..+..... ..  ..++.++.+++.+++.  +|+++...+...
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~  172 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVG  172 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccc
Confidence            999999999999987788899999999999999966654432211 12  2345689999999997  599999886554


Q ss_pred             cc
Q 024008          252 AI  253 (274)
Q Consensus       252 ~~  253 (274)
                      .+
T Consensus       173 ~~  174 (195)
T TIGR00477       173 EL  174 (195)
T ss_pred             cc
Confidence            33

Part of a tellurite-reducing operon tehA and tehB

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.82  E-value=1.7e-19  Score=149.47  Aligned_cols=184  Identities=19%  Similarity=0.153  Sum_probs=145.6

Q ss_pred             HHHHHhhcccccchhHhhhcCCCCccCCCccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHH
Q 024008           65 KLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIA  142 (274)
Q Consensus        65 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~  142 (274)
                      .+.+++.+....||.++|......-. .+-...+...++.+ ..++++|||||||+|.+++.+++. +.+|+|+++|+++
T Consensus        29 ~fy~l~Ld~~~~Yscayf~~~~~tL~-eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q  107 (283)
T COG2230          29 DFYRLFLDPSMTYSCAYFEDPDMTLE-EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQ  107 (283)
T ss_pred             HHHHHhcCCCCceeeEEeCCCCCChH-HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHH
Confidence            66777777888999999987543101 11133444555555 446689999999999999999985 8999999999999


Q ss_pred             HHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-
Q 024008          143 IKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-  221 (274)
Q Consensus       143 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-  221 (274)
                      .+.+++++...|+..+++++..|.....  ++||-|++..+|+|+..+..+.++.++.++|+|||++++.......... 
T Consensus       108 ~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~  185 (283)
T COG2230         108 LAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR  185 (283)
T ss_pred             HHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc
Confidence            9999999999999889999999998655  3499999999999998888999999999999999999987766554322 


Q ss_pred             CC-----------CcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          222 GP-----------PYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       222 ~~-----------~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      ..           ....+..++.+..+++||.+.+......
T Consensus       186 ~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~  226 (283)
T COG2230         186 RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRP  226 (283)
T ss_pred             cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcH
Confidence            11           1113689999999999999988776543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.82  E-value=1.9e-19  Score=154.31  Aligned_cols=141  Identities=15%  Similarity=0.156  Sum_probs=115.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCA  186 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~  186 (274)
                      ++.+|||||||+|..+..+++.|.+|+|+|+++++++.|+.+....+...+++++.+|+.+. ...++||+|++..+++|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            45699999999999999999999999999999999999998876544445799999998773 44578999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCC----------------CCCC---CCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISD----------------HVGG---PPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~----------------~~~~---~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +++  ...++.++.++|+|||.+++.......                ...+   ...+++.+++.++++.+||+++++.
T Consensus       211 v~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~  288 (322)
T PLN02396        211 VAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA  288 (322)
T ss_pred             cCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence            964  367999999999999999998754321                0011   1124799999999999999999886


Q ss_pred             ecc
Q 024008          248 DNK  250 (274)
Q Consensus       248 ~~~  250 (274)
                      -..
T Consensus       289 G~~  291 (322)
T PLN02396        289 GFV  291 (322)
T ss_pred             eeE
Confidence            644

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.82  E-value=2.6e-19  Score=131.23  Aligned_cols=106  Identities=31%  Similarity=0.430  Sum_probs=92.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc-CCCCCCCCeeEEEecc-c
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTWCPTELFDLIFDYT-F  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~fD~v~~~~-~  183 (274)
                      |+.+|||+|||+|..+..+++  ++.+++|+|+++++++.|+++....+..++++++.+|+ ......++||+|++.. .
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            467999999999999999999  99999999999999999999996666778999999999 4455567899999999 5


Q ss_pred             ccccC-hhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          184 FCAIE-PEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~-~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ++++. .+....+++++.+.|+|||++++..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            55333 2577889999999999999999865

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.82  E-value=7.2e-19  Score=147.64  Aligned_cols=142  Identities=19%  Similarity=0.154  Sum_probs=112.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhc--CCCCcceEEEEcccCC-CCCCCCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSS--LPNAKFVSFLKADFFT-WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~-~~~~~~fD~v~~  180 (274)
                      .++.+|||+|||+|..+..+++.   ..+|+|+|+|+++++.|+++...  .....+++++++|+.+ +.++++||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            45679999999999999888763   35999999999999999877542  1122479999999988 456679999999


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------------C--C---------CcccCH
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------------------G--P---------PYKVSV  229 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~--------------------~--~---------~~~~~~  229 (274)
                      ..++++++  +...+++++.++|+|||++++.++.......                    +  .         ..+.+.
T Consensus       152 ~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~  229 (261)
T PLN02233        152 GYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTG  229 (261)
T ss_pred             ecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCH
Confidence            99999985  4577899999999999999998876543200                    0  0         123589


Q ss_pred             HHHHHHHhcCCCcEEEEeecc
Q 024008          230 SDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       230 ~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +++.++++++||+.+......
T Consensus       230 ~el~~ll~~aGF~~~~~~~~~  250 (261)
T PLN02233        230 EELEKLALEAGFSSAKHYEIS  250 (261)
T ss_pred             HHHHHHHHHCCCCEEEEEEcC
Confidence            999999999999988766643

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.81  E-value=5.9e-19  Score=148.28  Aligned_cols=163  Identities=21%  Similarity=0.242  Sum_probs=119.0

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      +..+++... .++.+|||||||.|..+..+++. |++|+|+++|+++.+.+++.+...++.+++++...|..+...  +|
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~f  128 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KF  128 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CC
Confidence            444455554 45679999999999999999996 999999999999999999999999998999999999986543  99


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CC-C----------CCcccCHHHHHHHHhcC
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VG-G----------PPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~-~----------~~~~~~~~~~~~~~~~~  239 (274)
                      |.|++..+++|+.......+++++.++|+|||++++........     .. .          .....+..++...++..
T Consensus       129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~  208 (273)
T PF02353_consen  129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDA  208 (273)
T ss_dssp             SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHT
T ss_pred             CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcC
Confidence            99999999999988888999999999999999998755443221     00 0          01123788999999999


Q ss_pred             CCcEEEEeecccccCCccchhHHHHhhh
Q 024008          240 GFQAISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       240 Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      ||++..+......+.     +++..|++
T Consensus       209 ~l~v~~~~~~~~hY~-----~Tl~~W~~  231 (273)
T PF02353_consen  209 GLEVEDVENLGRHYA-----RTLRAWRE  231 (273)
T ss_dssp             T-EEEEEEE-HHHHH-----HHHHHHHH
T ss_pred             CEEEEEEEEcCcCHH-----HHHHHHHH
Confidence            999998887654443     55555554

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.80  E-value=2e-18  Score=147.19  Aligned_cols=150  Identities=15%  Similarity=0.225  Sum_probs=119.8

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  174 (274)
                      ...+...+..  .++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.++++....++  ++++...|+.....+++
T Consensus       109 ~~~~~~~~~~--~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~  184 (287)
T PRK12335        109 HSEVLEAVQT--VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEE  184 (287)
T ss_pred             cHHHHHHhhc--cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCC
Confidence            3444444442  4457999999999999999999999999999999999999999887765  58888889876545788


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE-ccCCCCCCCC--CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM-FPISDHVGGP--PYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ||+|++..++++++++....++.++.++|+|||++++.. +...+.....  ++.++.+++.+.+..  |+++...+..
T Consensus       185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~  261 (287)
T PRK12335        185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENV  261 (287)
T ss_pred             ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccc
Confidence            999999999999988888999999999999999976644 3322222122  455899999999975  9998886643

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.80  E-value=1.7e-18  Score=144.48  Aligned_cols=108  Identities=18%  Similarity=0.215  Sum_probs=93.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  181 (274)
                      ..++.+|||+|||+|..+..+++    ++.+++|+|+|+.+++.|++++...+...+++++.+|+..... ..+|+|+++
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~  132 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN  132 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence            34568999999999999887765    5789999999999999999999877666689999999987433 359999999


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .++++++++....++++++++|+|||.+++.+.
T Consensus       133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999999877788999999999999999999773

>TIGR00452 methyltransferase, putative

Probab=99.79  E-value=4.8e-18  Score=145.05  Aligned_cols=152  Identities=20%  Similarity=0.247  Sum_probs=113.0

Q ss_pred             HHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024008          100 HLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus       100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  177 (274)
                      .++... ..++++|||+|||+|..+..++..+. .|+|+|+|+.++..++..........++.+..+++.+..+.+.||+
T Consensus       112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~  191 (314)
T TIGR00452       112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDT  191 (314)
T ss_pred             HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCE
Confidence            344433 45678999999999999998888776 7999999999987654322221112468888888877555568999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------CCCCcccCHHHHHHHHhcCCCcEE
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------GGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      |+++++++|+.  +...++.+++++|+|||.+++.........             .+..+..+..++.++++++||+.+
T Consensus       192 V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V  269 (314)
T TIGR00452       192 VFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENF  269 (314)
T ss_pred             EEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEE
Confidence            99999999985  335789999999999999998654332110             112234589999999999999999


Q ss_pred             EEeeccccc
Q 024008          245 SIVDNKLAI  253 (274)
Q Consensus       245 ~~~~~~~~~  253 (274)
                      ++......-
T Consensus       270 ~i~~~~~tt  278 (314)
T TIGR00452       270 RILDVLKTT  278 (314)
T ss_pred             EEEeccCCC
Confidence            988755543

Known examples to date are restricted to the proteobacteria.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.79  E-value=3.3e-18  Score=140.88  Aligned_cols=142  Identities=24%  Similarity=0.320  Sum_probs=116.9

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      .+|||+|||+|..+..+++  ++.+++|+|+|+++++.++++....++.++++++..|+......++||+|++..+++++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            3799999999999998887  35799999999999999999998888878899999999764335689999999999998


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCC-----CCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISD-----HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      .  +...+++++.++|+|||.+++.++....     ......+..+..++.++++++||++++.......+
T Consensus        81 ~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~  149 (224)
T smart00828       81 K--DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEI  149 (224)
T ss_pred             C--CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence            5  3578999999999999999988754321     11122345688999999999999999988765544

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.78  E-value=5.3e-18  Score=146.22  Aligned_cols=145  Identities=24%  Similarity=0.345  Sum_probs=110.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||||||+|..+..++..+. .|+|+|+|+.++..++......+...++.++.+|+......+.||+|++..++
T Consensus       120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl  199 (322)
T PRK15068        120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL  199 (322)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence            35678999999999999999988765 69999999998876544332222224799999999875447889999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------CCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      +|+.  +...++.+++++|+|||.+++.........             .+..+..+..++.++++++||+.+.+.+...
T Consensus       200 ~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~  277 (322)
T PRK15068        200 YHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV  277 (322)
T ss_pred             hccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence            9985  346789999999999999988654322110             1112234889999999999999999987654


Q ss_pred             c
Q 024008          252 A  252 (274)
Q Consensus       252 ~  252 (274)
                      .
T Consensus       278 t  278 (322)
T PRK15068        278 T  278 (322)
T ss_pred             C
Confidence            4

>TIGR00740 methyltransferase, putative

Probab=99.78  E-value=1e-17  Score=139.20  Aligned_cols=138  Identities=17%  Similarity=0.206  Sum_probs=110.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++    ++.+++|+|+++.+++.|+++....+...+++++.+|+..... ..+|+|++..
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~  130 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF  130 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence            4567999999999999988876    4779999999999999999998766555679999999987543 3589999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------------C---------------CCCcccCHHH
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------------G---------------GPPYKVSVSD  231 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~----------------~---------------~~~~~~~~~~  231 (274)
                      +++++++++...+++++.++|+|||.+++.+.......                .               +.....+.++
T Consensus       131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~  210 (239)
T TIGR00740       131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIET  210 (239)
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHH
Confidence            99999877788999999999999999999864322110                0               1123457888


Q ss_pred             HHHHHhcCCCcEEE
Q 024008          232 YEEVLQPMGFQAIS  245 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~  245 (274)
                      +.++++++||..+.
T Consensus       211 ~~~~l~~aGF~~~~  224 (239)
T TIGR00740       211 HKARLKNVGFSHVE  224 (239)
T ss_pred             HHHHHHHcCCchHH
Confidence            88888888887543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.78  E-value=1.3e-17  Score=138.06  Aligned_cols=150  Identities=17%  Similarity=0.173  Sum_probs=115.9

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024008           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~  173 (274)
                      ..++.... .++.+|||+|||+|..+..+++   ++.+++|+|+++.+++.++++....+. ++++++.+|+.. ..+.+
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence            33444433 3457999999999999998876   356999999999999999999876655 579999999987 34567


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------------------------
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------------------------------  221 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~--------------------------------  221 (274)
                      +||+|++..++++++  ....++.++.++|+|||++++.+.+......                                
T Consensus       114 ~fD~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (231)
T TIGR02752       114 SFDYVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE  191 (231)
T ss_pred             CccEEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence            999999999988875  3457899999999999999987754322100                                


Q ss_pred             CCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          222 GPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      ......+.+++.++++++||+.+++.....
T Consensus       192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~  221 (231)
T TIGR02752       192 STRDFPGMDELAEMFQEAGFKDVEVKSYTG  221 (231)
T ss_pred             HHHHcCCHHHHHHHHHHcCCCeeEEEEccc
Confidence            001124678999999999999998877553

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.77  E-value=2.6e-18  Score=137.78  Aligned_cols=138  Identities=17%  Similarity=0.195  Sum_probs=114.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||-|.++..+++.|+.|+|+|+++..++.|+.+..+.++.  +++....+++... .++||+|+|..+++
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            57899999999999999999999999999999999999999999888753  7788888777433 38999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------CCCC---CcccCHHHHHHHHhcCCCcEEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------VGGP---PYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----------------~~~~---~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      |++++  ..++..+.+.+||||.+++...+....                ..++   .-++.++++..++..+|+.+.+.
T Consensus       136 Hv~dp--~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~  213 (243)
T COG2227         136 HVPDP--ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDR  213 (243)
T ss_pred             ccCCH--HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEee
Confidence            99644  569999999999999999987654321                1111   12357899999999999988776


Q ss_pred             ee
Q 024008          247 VD  248 (274)
Q Consensus       247 ~~  248 (274)
                      ..
T Consensus       214 ~g  215 (243)
T COG2227         214 KG  215 (243)
T ss_pred             cc
Confidence            65

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.77  E-value=1.6e-17  Score=139.39  Aligned_cols=157  Identities=18%  Similarity=0.173  Sum_probs=114.5

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      ..++.... .++.+|||+|||+|..+..+++  ++.+|+|+|+|+.+++.|++.        +++++.+|+....+.++|
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~f   90 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDT   90 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCc
Confidence            34444443 4568999999999999999987  478999999999999999763        378999999876566799


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------CCC-----CCcccCHHHH
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------VGG-----PPYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------------~~~-----~~~~~~~~~~  232 (274)
                      |+|+++.+++++++  ...++.++.++|+|||.+++...+....                  ...     .....+.+++
T Consensus        91 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  168 (255)
T PRK14103         91 DVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY  168 (255)
T ss_pred             eEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence            99999999999863  4678999999999999998865432110                  000     1123579999


Q ss_pred             HHHHhcCCCcEEEEeecccccCCccchhHHHHhhh
Q 024008          233 EEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       233 ~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      .++++++||++...... ... ...+.+.+..|.+
T Consensus       169 ~~~l~~aGf~v~~~~~~-~~~-~~~~~~~~~~~~~  201 (255)
T PRK14103        169 AELLTDAGCKVDAWETT-YVH-QLTGEDPVLDWIT  201 (255)
T ss_pred             HHHHHhCCCeEEEEeee-eee-eCCCchhhhhhhh
Confidence            99999999986544432 211 2233454555554

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.76  E-value=3.6e-17  Score=134.23  Aligned_cols=145  Identities=18%  Similarity=0.197  Sum_probs=114.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      ++.+|||+|||+|..+..++..+.+++|+|++++++..|+++....+...++.|..+|+....  ++||+|++..+++++
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~~~  132 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLIHY  132 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHHhC
Confidence            467999999999999999998888999999999999999999877665557999999987654  789999999999888


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCC-------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPIS-------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      +++....++.++.+++++++.+.+......             .......+.++.+++.++++.+||+++........+.
T Consensus       133 ~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~  212 (219)
T TIGR02021       133 PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGFY  212 (219)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccch
Confidence            777778899999999886655544321110             0001112346899999999999999998876554443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.76  E-value=3e-17  Score=149.60  Aligned_cols=168  Identities=23%  Similarity=0.264  Sum_probs=124.3

Q ss_pred             cchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcC
Q 024008           76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      ..|..+|..+..-   .........++.... .++.+|||+|||+|..+..+++ .+.+++|+|+|+.+++.|+++....
T Consensus       236 ~~~~~f~g~~~~v---~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~  312 (475)
T PLN02336        236 LRYERVFGEGFVS---TGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR  312 (475)
T ss_pred             HHHHHHhCCCCCC---CchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC
Confidence            3466666553321   111223344554443 3457999999999999988887 5779999999999999999887533


Q ss_pred             CCCcceEEEEcccCCC-CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC----------
Q 024008          154 PNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG----------  222 (274)
Q Consensus       154 ~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~----------  222 (274)
                        ..+++|..+|+... .++++||+|++..+++|++  +...++.+++++|+|||.+++.++........          
T Consensus       313 --~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~  388 (475)
T PLN02336        313 --KCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR  388 (475)
T ss_pred             --CCceEEEEcCcccCCCCCCCEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc
Confidence              35799999999874 4567899999999999985  34688999999999999999987654321111          


Q ss_pred             CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          223 PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      .....+..++.++++++||+++.+++..
T Consensus       389 g~~~~~~~~~~~~l~~aGF~~i~~~d~~  416 (475)
T PLN02336        389 GYDLHDVQAYGQMLKDAGFDDVIAEDRT  416 (475)
T ss_pred             CCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence            0123578999999999999999877644

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.75  E-value=1.7e-17  Score=129.27  Aligned_cols=135  Identities=27%  Similarity=0.336  Sum_probs=104.6

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCe
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF  175 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~f  175 (274)
                      .+.++... ..++.+|||+|||+|.++..+++.+.+++|+|+++.+++.       .    ++.....+... ..++++|
T Consensus        12 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~f   79 (161)
T PF13489_consen   12 LLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK-------R----NVVFDNFDAQDPPFPDGSF   79 (161)
T ss_dssp             HHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH-------T----TSEEEEEECHTHHCHSSSE
T ss_pred             HHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh-------h----hhhhhhhhhhhhhccccch
Confidence            34444432 3556899999999999999998889999999999999988       1    13333333323 4566899


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Gf~  242 (274)
                      |+|+++.+++|++  +...+++++.++|+|||++++........             ..+....++.+++.++++++||+
T Consensus        80 D~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~  157 (161)
T PF13489_consen   80 DLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFE  157 (161)
T ss_dssp             EEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred             hhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence            9999999999997  46789999999999999999988765310             11223457999999999999999


Q ss_pred             EEE
Q 024008          243 AIS  245 (274)
Q Consensus       243 ~~~  245 (274)
                      +++
T Consensus       158 iv~  160 (161)
T PF13489_consen  158 IVE  160 (161)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

...

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.74  E-value=2.1e-16  Score=135.18  Aligned_cols=186  Identities=16%  Similarity=0.209  Sum_probs=123.4

Q ss_pred             HHHHHHHHhhcccccchhHhhhcCCC----CccCC----CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCe
Q 024008           62 RVNKLQQLMHIESSGGWEKCWEEGLT----PWDIG----QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERY  132 (274)
Q Consensus        62 ~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~~~----~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~  132 (274)
                      .......++.+.....|...|.....    .++..    .....+..++... ..++.+|||+|||+|..+..+++.|.+
T Consensus        89 ~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~  168 (315)
T PLN02585         89 DKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAI  168 (315)
T ss_pred             HHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCE
Confidence            34455555554445667777775221    11111    1112233333322 235679999999999999999999999


Q ss_pred             EEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcE
Q 024008          133 VVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE  208 (274)
Q Consensus       133 v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~  208 (274)
                      |+|+|+|+.+++.|+++......    ..+++|...|+...  .++||+|++..+++|++++....++..+.+ +.+||.
T Consensus       169 V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l  245 (315)
T PLN02585        169 VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL  245 (315)
T ss_pred             EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE
Confidence            99999999999999999765421    23578999997643  478999999999988876666667777775 455655


Q ss_pred             EEEEEccCC---------CCCCCC-----CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          209 LITLMFPIS---------DHVGGP-----PYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       209 l~~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ++.......         ....++     .+..+.+++.++++++||+++..+...
T Consensus       246 iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~  301 (315)
T PLN02585        246 IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTA  301 (315)
T ss_pred             EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEee
Confidence            443211110         001111     234589999999999999987665543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.73  E-value=1.8e-16  Score=131.07  Aligned_cols=187  Identities=14%  Similarity=0.144  Sum_probs=128.5

Q ss_pred             HHHHHHhhcccccchhHhhhcCCCCccCC----CccH---HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEE
Q 024008           64 NKLQQLMHIESSGGWEKCWEEGLTPWDIG----QPAP---IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVG  135 (274)
Q Consensus        64 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~---~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~  135 (274)
                      ..+...+.+.....|...|..........    ....   .+..++... ..++.+|||+|||+|..+..+++.+.+|++
T Consensus        11 ~~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~   90 (230)
T PRK07580         11 SEVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVA   90 (230)
T ss_pred             hhhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEE
Confidence            34445555555678988887643321100    0111   222333321 235679999999999999999988889999


Q ss_pred             EeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       136 iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +|+++.++..|+++....+..+++.+..+|+..  ..+.||+|++..++++++.+....++..+.+.+++++.+.+....
T Consensus        91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~  168 (230)
T PRK07580         91 SDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYT  168 (230)
T ss_pred             EECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence            999999999999998776655679999999532  347899999999998888777788889998877544443322111


Q ss_pred             CC-------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          216 IS-------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       216 ~~-------------~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      ..             .........++..++.++++.+||+++.+......
T Consensus       169 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  218 (230)
T PRK07580        169 PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSG  218 (230)
T ss_pred             HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence            00             00111123457899999999999999998775533

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.73  E-value=1.2e-16  Score=128.29  Aligned_cols=137  Identities=16%  Similarity=0.138  Sum_probs=113.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--------CCCeEEEEeCChHHHHHHHHHhhcCCCCcc--eEEEEcccCC-CCCCCCe
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--------PERYVVGLEISDIAIKKAEELSSSLPNAKF--VSFLKADFFT-WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~-~~~~~~f  175 (274)
                      ..+.++||++||||..+..+.+        .+.+|+++|+||++++.++++..+.++.++  +.|+.+|+.+ +++++.|
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            3458999999999999998877        136899999999999999999977666444  9999999999 7788999


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------C----------------C
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------G----------------P  223 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~----------------~----------------~  223 (274)
                      |.+....-+..++  +..+++++++|+|||||++.+.+|+......                |                .
T Consensus       179 D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI  256 (296)
T KOG1540|consen  179 DAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESI  256 (296)
T ss_pred             eeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhh
Confidence            9999988888874  5578999999999999999999988765200                0                0


Q ss_pred             CcccCHHHHHHHHhcCCCcEEE
Q 024008          224 PYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      .-+.+.+++..+.+++||..+.
T Consensus       257 ~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  257 RRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hcCCCHHHHHHHHHHcCCcccc
Confidence            1123789999999999998876

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.73  E-value=4.1e-17  Score=129.70  Aligned_cols=135  Identities=19%  Similarity=0.235  Sum_probs=108.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      ++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.|+++....+.. +++++.+|+.+....++||+|+++..  
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~~--  121 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRAV--  121 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEccc--
Confidence            368999999999999998875  6789999999999999999999888775 49999999988544678999998752  


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHH
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKL  262 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~  262 (274)
                          .....+++.+.++|+|||.+++.....           ...++.++.+..|+.+..+...+.  ++.++..++
T Consensus       122 ----~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  181 (187)
T PRK00107        122 ----ASLSDLVELCLPLLKPGGRFLALKGRD-----------PEEEIAELPKALGGKVEEVIELTL--PGLDGERHL  181 (187)
T ss_pred             ----cCHHHHHHHHHHhcCCCeEEEEEeCCC-----------hHHHHHHHHHhcCceEeeeEEEec--CCCCCcEEE
Confidence                234578899999999999999886332           467888888989999888777554  334444443

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.73  E-value=4.9e-17  Score=123.98  Aligned_cols=164  Identities=20%  Similarity=0.288  Sum_probs=127.6

Q ss_pred             cchhHhhhcCCC----------CccCCCccHHHHHHHhcC------CCCCCeEEEEcCCcchhHHHhhCCCC--eEEEEe
Q 024008           76 GGWEKCWEEGLT----------PWDIGQPAPIIVHLHQSG------ALPKGRALVPGCGTGYDVVAMASPER--YVVGLE  137 (274)
Q Consensus        76 ~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~------~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~iD  137 (274)
                      .||++.|.....          -|.-......+..++...      .....+|||+|||.|.++..|++.|.  ..+|+|
T Consensus        19 ~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvD   98 (227)
T KOG1271|consen   19 SYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVD   98 (227)
T ss_pred             HHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccc
Confidence            678777766221          355444555566655432      12234999999999999999999776  599999


Q ss_pred             CChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC--h----hHHHHHHHHHHhcccCCcEEE
Q 024008          138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE--P----EMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       138 ~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~--~----~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      +|+.+++.|+..++..+.++.|+|.+.|+.. ....++||+|...+++..+.  +    ..+..++..+.+.|+|||+++
T Consensus        99 Ys~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv  178 (227)
T KOG1271|consen   99 YSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV  178 (227)
T ss_pred             cCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence            9999999999999999988889999999998 45568999999998887752  1    223678899999999999999


Q ss_pred             EEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          211 TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      |..++           +|.+|+.+.++..||........+
T Consensus       179 ItSCN-----------~T~dELv~~f~~~~f~~~~tvp~p  207 (227)
T KOG1271|consen  179 ITSCN-----------FTKDELVEEFENFNFEYLSTVPTP  207 (227)
T ss_pred             EEecC-----------ccHHHHHHHHhcCCeEEEEeeccc
Confidence            97643           389999999999888776655543

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.73  E-value=3.9e-17  Score=115.67  Aligned_cols=93  Identities=31%  Similarity=0.422  Sum_probs=80.8

Q ss_pred             EEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChh
Q 024008          113 LVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPE  190 (274)
Q Consensus       113 LDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~  190 (274)
                      ||+|||+|..+..+++. +.+++++|+++++++.++++....    ++.+..+|+.. +.++++||+|++..+++++  +
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence            89999999999999997 889999999999999999998654    36699999988 5677999999999999999  5


Q ss_pred             HHHHHHHHHHhcccCCcEEEE
Q 024008          191 MRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       191 ~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      +...+++++.++|||||++++
T Consensus        75 ~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   75 DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCcCeEEeC
Confidence            678999999999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.73  E-value=2.1e-16  Score=136.06  Aligned_cols=136  Identities=19%  Similarity=0.236  Sum_probs=110.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++  ++.+++++|. +.+++.+++++...++.++++++.+|+++...+ .+|+|+...+++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~lh  226 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRILY  226 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhhh
Confidence            447999999999999998887  5679999997 789999999998888888999999999863322 379999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC------------------cccCHHHHHHHHhcCCCcEEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP------------------YKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      +++++....+++++++.|+|||++++.++...+.. .+.                  -..+.+++.++++++||+.+.+
T Consensus       227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~  304 (306)
T TIGR02716       227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM  304 (306)
T ss_pred             cCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence            88877778899999999999999999886443321 110                  0123688999999999987754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.72  E-value=7.8e-17  Score=125.90  Aligned_cols=159  Identities=21%  Similarity=0.213  Sum_probs=110.8

Q ss_pred             CCCCccCCC-ccHH--HHHHHh-cCCCCC-CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcce
Q 024008           85 GLTPWDIGQ-PAPI--IVHLHQ-SGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV  159 (274)
Q Consensus        85 ~~~~~~~~~-~~~~--~~~~~~-~~~~~~-~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v  159 (274)
                      +..||.... +.+.  ....+. .+..+. .++||+|||.|.++..|+...-+++++|+++.+++.|+++....   ++|
T Consensus        15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V   91 (201)
T PF05401_consen   15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHV   91 (201)
T ss_dssp             SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCe
Confidence            456777643 3332  223332 122333 69999999999999999998889999999999999999999765   579


Q ss_pred             EEEEcccCCCCCCCCeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024008          160 SFLKADFFTWCPTELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       160 ~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                      +|++.|+.+..|.++||+|+++.+++++++ +++..++.++...|+|||.+++..+... .-.+..+.+..+.+.++|.+
T Consensus        92 ~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-~c~~wgh~~ga~tv~~~~~~  170 (201)
T PF05401_consen   92 EWIQADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-NCRRWGHAAGAETVLEMLQE  170 (201)
T ss_dssp             EEEES-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-HHHHTT-S--HHHHHHHHHH
T ss_pred             EEEECcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-cccccCcccchHHHHHHHHH
Confidence            999999999888999999999999999975 6788999999999999999999876431 11111233468888899988


Q ss_pred             CCCcEEEEee
Q 024008          239 MGFQAISIVD  248 (274)
Q Consensus       239 ~Gf~~~~~~~  248 (274)
                      . +..++..+
T Consensus       171 ~-~~~~~~~~  179 (201)
T PF05401_consen  171 H-LTEVERVE  179 (201)
T ss_dssp             H-SEEEEEEE
T ss_pred             H-hhheeEEE
Confidence            4 55444443

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.72  E-value=7.6e-17  Score=124.74  Aligned_cols=105  Identities=26%  Similarity=0.367  Sum_probs=91.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~  182 (274)
                      ++.+|||+|||+|..+..+++   ++.+++|+|+++++++.|++++...+.. +++|+++|+.+...  .++||+|++..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence            457999999999999999993   5789999999999999999998887765 89999999998432  27999999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +++++.  ....+++++.++|++||.+++..+.
T Consensus        82 ~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFP--DPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence            998885  4467899999999999999988865

...

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.72  E-value=5.2e-16  Score=123.34  Aligned_cols=135  Identities=18%  Similarity=0.272  Sum_probs=110.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..++..+.+++++|+++.+++.++++....+.  +++++.+|+.+.. .++||+|+++.++++
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNPPYLP   94 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECCCCCC
Confidence            4557899999999999999998777999999999999999999876653  5889999987744 358999999988876


Q ss_pred             cChh-------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          187 IEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       187 ~~~~-------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      .++.                   ....+++++.++|+|||.+++......          ...++.+.++++||....+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------~~~~~~~~l~~~gf~~~~~~  164 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------GEPDTFDKLDERGFRYEIVA  164 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------ChHHHHHHHHhCCCeEEEEE
Confidence            5421                   146789999999999999988774331          36789999999999999888


Q ss_pred             ecccccC
Q 024008          248 DNKLAIG  254 (274)
Q Consensus       248 ~~~~~~~  254 (274)
                      .....+.
T Consensus       165 ~~~~~~~  171 (179)
T TIGR00537       165 ERGLFFE  171 (179)
T ss_pred             EeecCce
Confidence            8665543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.72  E-value=1.5e-17  Score=134.24  Aligned_cols=136  Identities=19%  Similarity=0.222  Sum_probs=109.2

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-----ceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      +++|||+|||+|.++..|++.|+.|+|||+++.+++.|++.....+..+     ++++...|+....  ++||.|+|+.+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHH
Confidence            3689999999999999999999999999999999999999965544322     3677777776544  34999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------CCC---CCcccCHHHHHHHHhcCCCcEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------VGG---PPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      ++|+  .+...++..+.+.|+|||.+++........                ..|   ..-+.+++++..+++.+++++.
T Consensus       168 leHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~  245 (282)
T KOG1270|consen  168 LEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN  245 (282)
T ss_pred             HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence            9998  456789999999999999999977544311                111   1223689999999999999887


Q ss_pred             EEee
Q 024008          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      .+..
T Consensus       246 ~v~G  249 (282)
T KOG1270|consen  246 DVVG  249 (282)
T ss_pred             hhhc
Confidence            7765

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.72  E-value=3.7e-16  Score=131.42  Aligned_cols=159  Identities=19%  Similarity=0.300  Sum_probs=115.8

Q ss_pred             HHHhcCC-CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008          100 HLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus       100 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      .++.... .++.+|||+|||+|..+..+++  ++.+|+|+|+++.+++.|+++.      .+++++.+|+....+.++||
T Consensus        22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD   95 (258)
T PRK01683         22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALD   95 (258)
T ss_pred             HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCcc
Confidence            3444333 3457999999999999998887  4679999999999999999875      35889999998766667999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------------CCC--CCcccCHHHHHH
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------------VGG--PPYKVSVSDYEE  234 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------------------~~~--~~~~~~~~~~~~  234 (274)
                      +|+++.+++++++  ...++.++.++|+|||.+++........                    ..+  .....+..++.+
T Consensus        96 ~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  173 (258)
T PRK01683         96 LIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD  173 (258)
T ss_pred             EEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence            9999999998853  4678999999999999998864321110                    000  122346778899


Q ss_pred             HHhcCCCcEEEEeecccccCCccchhHHHHhhhh
Q 024008          235 VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS  268 (274)
Q Consensus       235 ~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (274)
                      ++..+|+.+ .+...... .+..+.+.+..|.+.
T Consensus       174 ~l~~~g~~v-~~~~~~~~-~~~~~~~~~~~~~~~  205 (258)
T PRK01683        174 ALAPAACRV-DIWHTTYY-HPMPSAQAIVEWVKG  205 (258)
T ss_pred             HHHhCCCce-eeeeeeee-eecCCchhhhhhhhh
Confidence            999999874 44333332 233345556666654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.71  E-value=5.7e-16  Score=129.73  Aligned_cols=128  Identities=16%  Similarity=0.150  Sum_probs=103.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~  186 (274)
                      +..+|||+|||+|..+..++..+.+++++|+|+.+++.++++..      .+.++.+|+.. +.++++||+|+++.++++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~  115 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQW  115 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence            45799999999999999998888999999999999999998753      25688899877 445678999999999988


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------CCCCCcccCHHHHHHHHhcCCCcE
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------VGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      ++  +...++.++.++|+|||.+++..+.....            ......+.+.+++.+++...|+..
T Consensus       116 ~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  182 (251)
T PRK10258        116 CG--NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH  182 (251)
T ss_pred             cC--CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence            74  44688999999999999999987665321            111123458999999999888753

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.71  E-value=3.2e-16  Score=124.32  Aligned_cols=128  Identities=17%  Similarity=0.214  Sum_probs=100.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..++.  ++.+|+++|.++.+++.++++....+. ++++++.+|+.+....++||+|++.. +
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~~~~fD~I~s~~-~  118 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQHEEQFDVITSRA-L  118 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccccCCccEEEehh-h
Confidence            3478999999999999988775  456899999999999999999887765 36999999998765567999999876 3


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc---CCCcEEEEeecccc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP---MGFQAISIVDNKLA  252 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Gf~~~~~~~~~~~  252 (274)
                      ++     ...+++.+.++|+|||.+++.....           ...++..+.+.   .||+.++..+...+
T Consensus       119 ~~-----~~~~~~~~~~~LkpgG~lvi~~~~~-----------~~~~~~~~~e~~~~~~~~~~~~~~~~~~  173 (181)
T TIGR00138       119 AS-----LNVLLELTLNLLKVGGYFLAYKGKK-----------YLDEIEEAKRKCQVLGVEPLEVPPLTGP  173 (181)
T ss_pred             hC-----HHHHHHHHHHhcCCCCEEEEEcCCC-----------cHHHHHHHHHhhhhcCceEeeccccCCC
Confidence            33     3457788899999999999875211           34455555444   79999988887766

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.70  E-value=5e-16  Score=131.62  Aligned_cols=140  Identities=19%  Similarity=0.229  Sum_probs=109.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++   ...+|+++|+++.+++.|+++....+. ++++++.+|+.. ..+++.||+|+++.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            3568999999999998876665   335899999999999999999877665 478999999987 34567899999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC------------CCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG------------GPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++++.+  ....+++++.++|+|||++++..+.......            ......+..++.++++++||..+.+...
T Consensus       155 v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~  231 (272)
T PRK11873        155 VINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPK  231 (272)
T ss_pred             cccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEec
Confidence            998774  3357899999999999999997654322110            0011247889999999999999887654

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.70  E-value=4.4e-16  Score=129.35  Aligned_cols=144  Identities=23%  Similarity=0.279  Sum_probs=107.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .+.+++|||||||.|+.+..++..|+ .|+|+|.++......+-...-.+....+.++...+......+.||+|++.+|+
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL  192 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL  192 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence            67889999999999999999999888 69999999877766433322222223344443444444446889999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      .|...+  -..+.+++..|++||.+++........             ..+..|..+..-+..+++.+||..+++.+...
T Consensus       193 YHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~  270 (315)
T PF08003_consen  193 YHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP  270 (315)
T ss_pred             hccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence            998433  467899999999999999866543322             12233446899999999999999999887553

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.69  E-value=4.5e-16  Score=133.99  Aligned_cols=137  Identities=15%  Similarity=0.101  Sum_probs=107.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      ++.+|||+|||+|..+..+++  .+.+++++|+++++++.|+++...    .+++++.+|+.+ ..+++.||+|+++.++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L  188 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence            457999999999999888876  457999999999999999987642    358899999987 4456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CC----C-CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VG----G-PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-~~----~-~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +++++.  ..+++++.++|+|||.+++........ ..    . .....+.+++.++++++||+.+++....
T Consensus       189 ~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~  258 (340)
T PLN02490        189 EYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG  258 (340)
T ss_pred             hhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence            988643  568999999999999988765322110 00    0 0112478999999999999999887643

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.69  E-value=1.9e-15  Score=133.19  Aligned_cols=149  Identities=23%  Similarity=0.214  Sum_probs=114.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||||||+|..+..+++ .+.+|+|+|+|+++++.|+++....    .+++...|+...  +++||.|++..+++
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~l--~~~fD~Ivs~~~~e  239 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRDL--NGQFDRIVSVGMFE  239 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhhc--CCCCCEEEEeCchh
Confidence            4567999999999999998887 5789999999999999999988432    478888887654  46899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-C----------CcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-P----------PYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      |+.......+++++.++|+|||++++..+........ .          .+..+.+++.+.++ .||.+.++......+ 
T Consensus       240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy-  317 (383)
T PRK11705        240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADY-  317 (383)
T ss_pred             hCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhH-
Confidence            9977777889999999999999999977654322111 0          11236788888766 489988876644333 


Q ss_pred             CccchhHHHHhhh
Q 024008          255 PRKGREKLGRWKR  267 (274)
Q Consensus       255 ~~~~~~~~~~~~~  267 (274)
                          .+++..|.+
T Consensus       318 ----~~TL~~W~~  326 (383)
T PRK11705        318 ----DRTLMAWHE  326 (383)
T ss_pred             ----HHHHHHHHH
Confidence                356666644

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.68  E-value=7.6e-16  Score=120.80  Aligned_cols=164  Identities=22%  Similarity=0.293  Sum_probs=124.6

Q ss_pred             HHHhcC-CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008          100 HLHQSG-ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus       100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      +++... .....+|.|+|||+|..+..|++  +++.++|+|-|++|++.|+++.      ++++|..+|+..+.+...+|
T Consensus        21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~d   94 (257)
T COG4106          21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTD   94 (257)
T ss_pred             HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccc
Confidence            344443 34458999999999999999988  8899999999999999999887      67999999999999889999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------------------CC----CCcccCHHHHHH
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------------------GG----PPYKVSVSDYEE  234 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~------------------~~----~~~~~~~~~~~~  234 (274)
                      +++++.+|+++++.  ..++.++...|.|||.+-+-.....+..                  .+    ..-..+...+-+
T Consensus        95 llfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~  172 (257)
T COG4106          95 LLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYE  172 (257)
T ss_pred             hhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHH
Confidence            99999999999632  5788999999999999988664332220                  01    011247778888


Q ss_pred             HHhcCCCcEEEEeecccccCCccchhHHHHhhhhhcccC
Q 024008          235 VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSL  273 (274)
Q Consensus       235 ~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (274)
                      ++...+-++--.+.  ....+.++.+.|.-|.+.....|
T Consensus       173 lLa~~~~rvDiW~T--~Y~h~l~~a~aIvdWvkgTgLrP  209 (257)
T COG4106         173 LLAPLACRVDIWHT--TYYHQLPGADAIVDWVKGTGLRP  209 (257)
T ss_pred             HhCcccceeeeeee--eccccCCCccchhhheeccccce
Confidence            88887665433333  34555567788888877665444

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.67  E-value=1.8e-16  Score=113.98  Aligned_cols=94  Identities=30%  Similarity=0.357  Sum_probs=79.5

Q ss_pred             EEEEcCCcchhHHHhhCC---C--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec-ccc
Q 024008          112 ALVPGCGTGYDVVAMASP---E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY-TFF  184 (274)
Q Consensus       112 vLDiG~G~G~~~~~l~~~---~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~-~~~  184 (274)
                      |||+|||+|..+..+++.   +  .+++++|+++++++.++++....+.  +++++++|+.+ ....++||+|++. .++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~   78 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL   78 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence            799999999999988863   3  7999999999999999999977553  69999999988 3345799999995 559


Q ss_pred             cccChhHHHHHHHHHHhcccCCc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDG  207 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG  207 (274)
                      +|++++....+++++.++|+|||
T Consensus        79 ~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   79 HHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999998

>PRK14968 putative methyltransferase; Provisional

Probab=99.67  E-value=4.6e-15  Score=118.70  Aligned_cols=136  Identities=23%  Similarity=0.356  Sum_probs=108.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..++..+.+++++|+++++++.+++++...+..++ +.++.+|+.+..+.++||+|+++..+.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL  101 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence            4567999999999999999998889999999999999999999877665433 889999988865566899999887654


Q ss_pred             ccC-------------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008          186 AIE-------------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~-------------------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      ...                   ......+++++.++|+|||.+++.....          ...+++.++++++||++..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------~~~~~l~~~~~~~g~~~~~~  171 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------TGEDEVLEYLEKLGFEAEVV  171 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------CCHHHHHHHHHHCCCeeeee
Confidence            311                   1234678999999999999988776322          24678999999999998877


Q ss_pred             eecccc
Q 024008          247 VDNKLA  252 (274)
Q Consensus       247 ~~~~~~  252 (274)
                      ......
T Consensus       172 ~~~~~~  177 (188)
T PRK14968        172 AEEKFP  177 (188)
T ss_pred             eecccC
Confidence            664433

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.66  E-value=1.3e-15  Score=123.14  Aligned_cols=101  Identities=17%  Similarity=0.302  Sum_probs=86.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++|+|+|+++++.|+++.      .++++..+|+.++.++++||+|+++.++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~~~~~sfD~V~~~~vL  115 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDPFKDNFFDLVLTKGVL  115 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCCCCCCCEEEEEECChh
Confidence            3457999999999999999887  4679999999999999999875      2467889998886677899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +|++++....+++++.+++  ++.+++.++.
T Consensus       116 ~hl~p~~~~~~l~el~r~~--~~~v~i~e~~  144 (204)
T TIGR03587       116 IHINPDNLPTAYRELYRCS--NRYILIAEYY  144 (204)
T ss_pred             hhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence            9998888889999999997  4677776653

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.66  E-value=1.6e-15  Score=125.89  Aligned_cols=141  Identities=22%  Similarity=0.272  Sum_probs=111.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..++..   ..+++++|+++.+++.++++....+...+++++.+|+... .+.+.||+|++..+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            4579999999999999988873   3799999999999999999987655556799999999873 34578999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------------------CC-C----------CcccCHHH
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------------------GG-P----------PYKVSVSD  231 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~---------------------~~-~----------~~~~~~~~  231 (274)
                      +++++  ....++..+.++|+|||.+++.++......                     .+ .          ...++.++
T Consensus       131 l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (239)
T PRK00216        131 LRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE  208 (239)
T ss_pred             cccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence            88875  346789999999999999988765443211                     00 0          11246788


Q ss_pred             HHHHHhcCCCcEEEEeecc
Q 024008          232 YEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +.++++++||+.+.+....
T Consensus       209 ~~~~l~~aGf~~~~~~~~~  227 (239)
T PRK00216        209 LAAMLEEAGFERVRYRNLT  227 (239)
T ss_pred             HHHHHHhCCCceeeeeeee
Confidence            9999999999998887744

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.66  E-value=3.4e-15  Score=119.49  Aligned_cols=127  Identities=17%  Similarity=0.116  Sum_probs=100.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++++|+++.+++.++++....+. .+++++.+|..... .++||+|++....
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~-~~~~D~v~~~~~~  107 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIEL-PGKADAIFIGGSG  107 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhc-CcCCCEEEECCCc
Confidence            3567999999999999998877  456999999999999999999877665 36899999875433 3679999987654


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      .++     ..+++.+.+.|+|||++++.....          .+..++.++++++||..+.+....
T Consensus       108 ~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~----------~~~~~~~~~l~~~g~~~~~~~~~~  158 (187)
T PRK08287        108 GNL-----TAIIDWSLAHLHPGGRLVLTFILL----------ENLHSALAHLEKCGVSELDCVQLQ  158 (187)
T ss_pred             cCH-----HHHHHHHHHhcCCCeEEEEEEecH----------hhHHHHHHHHHHCCCCcceEEEEE
Confidence            433     467889999999999998865322          257788999999999877765543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.65  E-value=2.7e-15  Score=136.86  Aligned_cols=138  Identities=20%  Similarity=0.184  Sum_probs=110.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~~  184 (274)
                      ++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++.....   .++++++.+|+..   ..+.++||+|++..++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l  113 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLNISDGSVDLIFSNWLL  113 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence            457999999999999999999888999999999999988764322   2578999999964   3456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ++++++....++.++.++|+|||++++.+......     ...+.+..+...+.+++.++||.......
T Consensus       114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  182 (475)
T PLN02336        114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNS  182 (475)
T ss_pred             HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCE
Confidence            99988778899999999999999999876543221     11334445688999999999988765443

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.65  E-value=3.6e-15  Score=123.76  Aligned_cols=150  Identities=20%  Similarity=0.202  Sum_probs=112.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      .+.+|||+|||+|..+..+++.  ..+++++|+++.++..++++..     +++.++.+|+.. ..++++||+|++..++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l  108 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL  108 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence            3479999999999999999884  4578999999999999988764     358899999987 4466789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-------CCCcccCHHHHHHHHhcCCCcEEEEeecccccCCcc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-------GPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRK  257 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~  257 (274)
                      +++.  +...++.++.++|+|||.+++..+.......       ......+.+++.++++.+ |..+.+........-. 
T Consensus       109 ~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~~~~~~~-  184 (240)
T TIGR02072       109 QWCD--DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEEELITLSFD-  184 (240)
T ss_pred             hhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEEEEEEEeCC-
Confidence            9884  3467899999999999999998765432100       011234788999999998 8887776654444332 


Q ss_pred             chhHHHHhh
Q 024008          258 GREKLGRWK  266 (274)
Q Consensus       258 ~~~~~~~~~  266 (274)
                      ....+..+.
T Consensus       185 ~~~~~~~~l  193 (240)
T TIGR02072       185 DPLDVLRHL  193 (240)
T ss_pred             CHHHHHHHH
Confidence            334444443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK08317 hypothetical protein; Provisional

Probab=99.65  E-value=1.3e-14  Score=120.26  Aligned_cols=147  Identities=24%  Similarity=0.288  Sum_probs=111.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++   +..+++++|+++.+++.++++....  ..++.+..+|+.. ..+.++||+|++..
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~~   95 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRSDR   95 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEEec
Confidence            4567999999999999998887   3469999999999999999883322  2579999999876 44567899999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-----------------CCCcccCHHHHHHHHhcCCCcEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-----------------GPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      +++++.+  ...+++++.++|+|||.+++..........                 .........++.++++++||..+.
T Consensus        96 ~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  173 (241)
T PRK08317         96 VLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIE  173 (241)
T ss_pred             hhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCcee
Confidence            9998853  467899999999999999987643211000                 001112456899999999999988


Q ss_pred             EeecccccCCcc
Q 024008          246 IVDNKLAIGPRK  257 (274)
Q Consensus       246 ~~~~~~~~~~~~  257 (274)
                      +...........
T Consensus       174 ~~~~~~~~~~~~  185 (241)
T PRK08317        174 VEPYTLIETDLK  185 (241)
T ss_pred             EEEEEEeccCcc
Confidence            887766554443

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=2.5e-15  Score=125.80  Aligned_cols=137  Identities=22%  Similarity=0.244  Sum_probs=106.3

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      ..++++....++.+|||+|||+|.+++..++.|+ +++|+|++|.++..|++|+..+++...+.....+.......++||
T Consensus       152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D  231 (300)
T COG2264         152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD  231 (300)
T ss_pred             HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence            4455555667889999999999999999999988 699999999999999999998876542333333333333346999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      +|++|-.-.     -...+...+.+.++|||+++++..-..          ..+.+.+.++++||.++.+...
T Consensus       232 vIVANILA~-----vl~~La~~~~~~lkpgg~lIlSGIl~~----------q~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         232 VIVANILAE-----VLVELAPDIKRLLKPGGRLILSGILED----------QAESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             EEEehhhHH-----HHHHHHHHHHHHcCCCceEEEEeehHh----------HHHHHHHHHHhCCCeEeEEEec
Confidence            999886322     345788999999999999998763221          3678888998999999888765

>PRK14967 putative methyltransferase; Provisional

Probab=99.65  E-value=1.3e-14  Score=119.27  Aligned_cols=147  Identities=19%  Similarity=0.225  Sum_probs=111.6

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  174 (274)
                      .+...+... ..++.+|||+|||+|..+..+++.+. +++++|+++.+++.++++....+.  ++.++.+|+....+.++
T Consensus        24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~  101 (223)
T PRK14967         24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP  101 (223)
T ss_pred             HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence            344444433 33457999999999999999888665 999999999999999999876653  58899999987666678


Q ss_pred             eeEEEecccccccCh-------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024008          175 FDLIFDYTFFCAIEP-------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEV  235 (274)
Q Consensus       175 fD~v~~~~~~~~~~~-------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ||+|+++..+..-+.                   .....+++++.++|+|||++++.....          ....++.+.
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~----------~~~~~~~~~  171 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL----------SGVERTLTR  171 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc----------cCHHHHHHH
Confidence            999999865442211                   124567889999999999998765322          145688899


Q ss_pred             HhcCCCcEEEEeecccccCC
Q 024008          236 LQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       236 ~~~~Gf~~~~~~~~~~~~~~  255 (274)
                      +++.||.+........++.+
T Consensus       172 l~~~g~~~~~~~~~~~~~~~  191 (223)
T PRK14967        172 LSEAGLDAEVVASQWIPFGP  191 (223)
T ss_pred             HHHCCCCeEEEEeeccCccH
Confidence            99999998887776666644

>PLN03075 nicotianamine synthase; Provisional

Probab=99.64  E-value=3.4e-15  Score=125.39  Aligned_cols=137  Identities=16%  Similarity=0.129  Sum_probs=104.0

Q ss_pred             cchhHhhhcCCCCccCCCccHHHHHHHhc----------C-CCCCCeEEEEcCCcchh-HHHhhC---CCCeEEEEeCCh
Q 024008           76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQS----------G-ALPKGRALVPGCGTGYD-VVAMAS---PERYVVGLEISD  140 (274)
Q Consensus        76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~vLDiG~G~G~~-~~~l~~---~~~~v~~iD~s~  140 (274)
                      .+|.........+|......++...+++.          . ..++.+|+|||||.|.. +..++.   ++.+++++|+++
T Consensus        80 ~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~  159 (296)
T PLN03075         80 AHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP  159 (296)
T ss_pred             HHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH
Confidence            45555555555566655544444433321          1 23668999999997754 333432   667999999999


Q ss_pred             HHHHHHHHHhhc-CCCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          141 IAIKKAEELSSS-LPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       141 ~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ++++.|++.+.. .++.++++|..+|+.+.. ..++||+|++. ++++++.+....+++++.+.|+|||.+++..
T Consensus       160 ~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        160 SANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             HHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            999999999964 677789999999998754 34789999999 8888877777899999999999999999876

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.64  E-value=2.9e-15  Score=122.20  Aligned_cols=135  Identities=24%  Similarity=0.274  Sum_probs=112.8

Q ss_pred             CCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEeccc
Q 024008          109 KGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~  183 (274)
                      ..+|||+|||+|..++.+++.  .+++++||+.+++.+.|++++..+++.++++++++|+.+.   ....+||+|+|+..
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP  124 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP  124 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence            689999999999999999984  4799999999999999999999999999999999999873   33357999999988


Q ss_pred             ccccChh----------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          184 FCAIEPE----------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       184 ~~~~~~~----------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +......                ..+.+++...++|||||.+.++....           ...++.+++.+.+|....+.
T Consensus       125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------rl~ei~~~l~~~~~~~k~i~  193 (248)
T COG4123         125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------RLAEIIELLKSYNLEPKRIQ  193 (248)
T ss_pred             CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------HHHHHHHHHHhcCCCceEEE
Confidence            7654322                14789999999999999999987322           56788999999999988887


Q ss_pred             ecccccC
Q 024008          248 DNKLAIG  254 (274)
Q Consensus       248 ~~~~~~~  254 (274)
                      .......
T Consensus       194 ~V~p~~~  200 (248)
T COG4123         194 FVYPKIG  200 (248)
T ss_pred             EecCCCC
Confidence            7554433

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.64  E-value=1.1e-14  Score=121.79  Aligned_cols=140  Identities=24%  Similarity=0.295  Sum_probs=108.4

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  174 (274)
                      .+..++......+.+|||+|||+|..+..++.  ++.+++|+|+++.+++.++++....++. +++++.+|+.+..+.++
T Consensus        76 l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~  154 (251)
T TIGR03534        76 LVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGK  154 (251)
T ss_pred             HHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCc
Confidence            34444444444456999999999999999987  4679999999999999999999877663 69999999987666789


Q ss_pred             eeEEEeccccccc------Chh------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024008          175 FDLIFDYTFFCAI------EPE------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS  230 (274)
Q Consensus       175 fD~v~~~~~~~~~------~~~------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      ||+|+++.++...      ...                  ....++..+.++|+|||.+++....           ...+
T Consensus       155 fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-----------~~~~  223 (251)
T TIGR03534       155 FDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-----------DQGE  223 (251)
T ss_pred             eeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------cHHH
Confidence            9999998765431      111                  1246789999999999998886411           1467


Q ss_pred             HHHHHHhcCCCcEEEEee
Q 024008          231 DYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       231 ~~~~~~~~~Gf~~~~~~~  248 (274)
                      ++.++++++||..+.+..
T Consensus       224 ~~~~~l~~~gf~~v~~~~  241 (251)
T TIGR03534       224 AVRALFEAAGFADVETRK  241 (251)
T ss_pred             HHHHHHHhCCCCceEEEe
Confidence            899999999998777644

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.64  E-value=4.9e-15  Score=123.81  Aligned_cols=122  Identities=23%  Similarity=0.274  Sum_probs=96.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+. +++|+|+++.+++.|+++...+++..++.+..+|.       +||+|+++...
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~  189 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA  189 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH
Confidence            45678999999999999998888766 59999999999999999998776544455444332       79999986432


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                           +....++.++.++|+|||.+++.....          ...+++.+.++..||.++.....
T Consensus       190 -----~~~~~l~~~~~~~LkpgG~lilsgi~~----------~~~~~v~~~l~~~Gf~~~~~~~~  239 (250)
T PRK00517        190 -----NPLLELAPDLARLLKPGGRLILSGILE----------EQADEVLEAYEEAGFTLDEVLER  239 (250)
T ss_pred             -----HHHHHHHHHHHHhcCCCcEEEEEECcH----------hhHHHHHHHHHHCCCEEEEEEEe
Confidence                 334578899999999999999976432          15678999999999998876653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.63  E-value=5.5e-15  Score=116.36  Aligned_cols=105  Identities=27%  Similarity=0.422  Sum_probs=88.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++.+  .+|+++|+++.+++.++++...+++.+ ++++..|+.+..+.++||+|+++.+++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH  109 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence            56899999999999999999844  369999999999999999999988765 999999999877688999999998876


Q ss_pred             ccCh---hHHHHHHHHHHhcccCCcEEEEEE
Q 024008          186 AIEP---EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       186 ~~~~---~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .-..   .....++....+.|+|||.++++.
T Consensus       110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen  110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            5432   356889999999999999997765

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.63  E-value=9e-15  Score=124.62  Aligned_cols=132  Identities=16%  Similarity=0.145  Sum_probs=103.2

Q ss_pred             HHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEE
Q 024008          100 HLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI  178 (274)
Q Consensus       100 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v  178 (274)
                      +++.....++.+|||+|||+|..+..+++.+. +|+++|+++.+++.|+++...+++..++.+...+... ...++||+|
T Consensus       151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-~~~~~fDlV  229 (288)
T TIGR00406       151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-PIEGKADVI  229 (288)
T ss_pred             HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc-ccCCCceEE
Confidence            34444455678999999999999998888665 8999999999999999999888776677777776433 235689999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +++....     ....++.++.++|+|||.+++.....          ....++.+.+++. |+++.+..
T Consensus       230 van~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~~----------~~~~~v~~~~~~~-f~~~~~~~  283 (288)
T TIGR00406       230 VANILAE-----VIKELYPQFSRLVKPGGWLILSGILE----------TQAQSVCDAYEQG-FTVVEIRQ  283 (288)
T ss_pred             EEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCcH----------hHHHHHHHHHHcc-CceeeEec
Confidence            9876533     34578899999999999999876432          1467888888876 98877655

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.63  E-value=2.6e-15  Score=126.89  Aligned_cols=133  Identities=23%  Similarity=0.238  Sum_probs=102.2

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      ..+++.....++.+|||+|||+|.+++..++.|+ +|+++|++|.+++.|++|+..+++.+++.+.  . .......+||
T Consensus       151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~d  227 (295)
T PF06325_consen  151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFD  227 (295)
T ss_dssp             HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EE
T ss_pred             HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCC
Confidence            4455555567788999999999999999999888 7999999999999999999999988766553  1 2223348999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      +|+++-...     .+..++..+.++|+|||.++++..-..          ..+++.+.++. ||.++.....
T Consensus       228 lvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~~----------~~~~v~~a~~~-g~~~~~~~~~  284 (295)
T PF06325_consen  228 LVVANILAD-----VLLELAPDIASLLKPGGYLILSGILEE----------QEDEVIEAYKQ-GFELVEEREE  284 (295)
T ss_dssp             EEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEGG----------GHHHHHHHHHT-TEEEEEEEEE
T ss_pred             EEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEccccHH----------HHHHHHHHHHC-CCEEEEEEEE
Confidence            999875544     345678889999999999998764332          57888899977 9998877653

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.62  E-value=4.7e-17  Score=116.59  Aligned_cols=95  Identities=33%  Similarity=0.478  Sum_probs=62.8

Q ss_pred             EEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCc--ceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024008          113 LVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       113 LDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  188 (274)
                      ||+|||+|..+..++.  +..+++++|+|+.+++.++++........  .+++...|.....+.++||+|++..+++|+ 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence            7999999999998887  47899999999999999988887764321  233333444333444699999999999999 


Q ss_pred             hhHHHHHHHHHHhcccCCcEE
Q 024008          189 PEMRAAWAQKIKDFLKPDGEL  209 (274)
Q Consensus       189 ~~~~~~~l~~l~~~L~~gG~l  209 (274)
                       ++...+++++.++|+|||+|
T Consensus        80 -~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 -EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -S-HHHHHHHHTTT-TSS-EE
T ss_pred             -hhHHHHHHHHHHHcCCCCCC
Confidence             56679999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.62  E-value=9.2e-15  Score=121.08  Aligned_cols=139  Identities=18%  Similarity=0.191  Sum_probs=109.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~  183 (274)
                      ..++.+|||+|||+|..+..+++.+.+++++|+++.++..++++....+.  .+++...|+....  ..++||+|++..+
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~  123 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM  123 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence            34567999999999999999988888999999999999999988765543  4778888876632  4578999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------CC--CCCcccCHHHHHHHHhcCCCcEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------VG--GPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----------------~~--~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      +++++  ....++..+.+.|+|||.+++........                 ..  .....++.+++.++++.+||.++
T Consensus       124 l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v  201 (233)
T PRK05134        124 LEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ  201 (233)
T ss_pred             hhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence            99875  34578899999999999999876532110                 00  01123578999999999999999


Q ss_pred             EEee
Q 024008          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      ....
T Consensus       202 ~~~~  205 (233)
T PRK05134        202 DITG  205 (233)
T ss_pred             eeee
Confidence            8764

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.61  E-value=2e-14  Score=122.02  Aligned_cols=129  Identities=23%  Similarity=0.276  Sum_probs=103.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      ++.+|||+|||+|..+..+++  ++.+++++|+|+.+++.|++++...++.++++++.+|+.+..+.++||+|+++..+.
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            347999999999999999987  467999999999999999999988877678999999997755556899999986542


Q ss_pred             c------cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024008          186 A------IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       186 ~------~~~-----------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~  242 (274)
                      .      +++                 +....++..+.++|+|||++++...            .+.+.+.+++..+||.
T Consensus       201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g------------~~~~~v~~~~~~~~~~  268 (284)
T TIGR03533       201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG------------NSMEALEEAYPDVPFT  268 (284)
T ss_pred             CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------cCHHHHHHHHHhCCCc
Confidence            2      110                 1236778999999999999987652            1456899999999987


Q ss_pred             EEEEee
Q 024008          243 AISIVD  248 (274)
Q Consensus       243 ~~~~~~  248 (274)
                      -.....
T Consensus       269 ~~~~~~  274 (284)
T TIGR03533       269 WLEFEN  274 (284)
T ss_pred             eeeecC
Confidence            654443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.61  E-value=1.7e-14  Score=118.72  Aligned_cols=139  Identities=18%  Similarity=0.191  Sum_probs=109.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~~  185 (274)
                      ++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+. .++.+...|+.+..  ..++||+|++..+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            467999999999999999888888999999999999999998876543 25888888887632  237899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------CCCC--CcccCHHHHHHHHhcCCCcEEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------VGGP--PYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----------------~~~~--~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      ++.  ....+++.+.++|+|||.+++........                 ..+.  ...++..++.++++++||+++++
T Consensus       124 ~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~  201 (224)
T TIGR01983       124 HVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV  201 (224)
T ss_pred             hCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence            885  34578999999999999988876432210                 0011  12347889999999999999988


Q ss_pred             eec
Q 024008          247 VDN  249 (274)
Q Consensus       247 ~~~  249 (274)
                      ...
T Consensus       202 ~~~  204 (224)
T TIGR01983       202 KGL  204 (224)
T ss_pred             eeE
Confidence            753

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK06202 hypothetical protein; Provisional

Probab=99.61  E-value=1e-14  Score=120.77  Aligned_cols=137  Identities=14%  Similarity=0.076  Sum_probs=101.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~  179 (274)
                      .++.+|||+|||+|..+..+++      .+.+++|+|+++++++.|+++....    ++++...+... ..++++||+|+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~  134 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVT  134 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEE
Confidence            3457999999999999888764      2359999999999999999886443    35566655543 23467899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------CCC---CCcccCHHHHHHHHh
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------VGG---PPYKVSVSDYEEVLQ  237 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------------~~~---~~~~~~~~~~~~~~~  237 (274)
                      ++.+++|++++....++.++.++++  |.+++.++.....                   ..+   ....++.+++.++++
T Consensus       135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~  212 (232)
T PRK06202        135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP  212 (232)
T ss_pred             ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence            9999999987777789999999998  5555554433210                   001   012468999999999


Q ss_pred             cCCCcEEEEeecc
Q 024008          238 PMGFQAISIVDNK  250 (274)
Q Consensus       238 ~~Gf~~~~~~~~~  250 (274)
                      + ||++.......
T Consensus       213 ~-Gf~~~~~~~~~  224 (232)
T PRK06202        213 Q-GWRVERQWPFR  224 (232)
T ss_pred             C-CCeEEecccee
Confidence            9 99987766544

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.61  E-value=5.2e-15  Score=119.70  Aligned_cols=126  Identities=21%  Similarity=0.100  Sum_probs=98.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc-CCC---CCCCCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTW---CPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~---~~~~~fD~v~~~  181 (274)
                      ++.+|||+|||+|..+..+++  ++.+++++|+++.+++.|+++....+. .+++++++|+ ...   .++++||+|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            567999999999999999877  467899999999999999999877665 5799999998 432   456789999987


Q ss_pred             ccccccCh------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          182 TFFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       182 ~~~~~~~~------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      ....+...      .....+++++.++|+|||.+++.....          .-..++.+.+++.||.+.
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~----------~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE----------GYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH----------HHHHHHHHHHHhCccccc
Confidence            54332110      113678999999999999999876322          135678889999998765

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.60  E-value=2.3e-14  Score=117.67  Aligned_cols=139  Identities=19%  Similarity=0.241  Sum_probs=109.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++..   ...++++..+|+.+. .+.++||+|++..+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~  115 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG  115 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence            56899999999999999888733   489999999999999998875   225689999999873 44578999999998


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------------------CCC---------CcccCHHH
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------------------GGP---------PYKVSVSD  231 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----------------------~~~---------~~~~~~~~  231 (274)
                      +++.+  ....+++.+.+.|+|||++++..+......                       ...         ....+..+
T Consensus       116 ~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (223)
T TIGR01934       116 LRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEE  193 (223)
T ss_pred             eCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHH
Confidence            88774  456889999999999999998775432210                       000         11237788


Q ss_pred             HHHHHhcCCCcEEEEeeccc
Q 024008          232 YEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      +.++++++||+.+.+.....
T Consensus       194 ~~~~l~~aGf~~~~~~~~~~  213 (223)
T TIGR01934       194 LAAMLKEAGFEEVRYRSLTF  213 (223)
T ss_pred             HHHHHHHcCCccceeeeeec
Confidence            99999999999988876543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.60  E-value=2e-14  Score=114.32  Aligned_cols=139  Identities=19%  Similarity=0.215  Sum_probs=103.4

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEeccccccc
Q 024008          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~  187 (274)
                      .+.||+|+|.|+.+..++.+-+ +|..+|+.+..++.|++.+.... ....++.+..++++.|. ++||+||+.+++.|+
T Consensus        57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL  135 (218)
T PF05891_consen   57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL  135 (218)
T ss_dssp             SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred             ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence            6999999999999998877655 89999999999999998776521 13468888888886665 699999999999999


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      +++++-.++.++...|+|+|.|++-+......     .......-+.+.+.++|++||++++.....
T Consensus       136 TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q  202 (218)
T PF05891_consen  136 TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ  202 (218)
T ss_dssp             -HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred             CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence            99999999999999999999999855433211     112233457999999999999999887663

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.59  E-value=3.9e-14  Score=123.79  Aligned_cols=125  Identities=15%  Similarity=0.125  Sum_probs=96.2

Q ss_pred             ccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCC--cceEEEE
Q 024008           89 WDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLK  163 (274)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~  163 (274)
                      |........-.-++..... ...+|||+|||+|..+..+++  +..+|+++|.|+.+++.+++++..++..  .+++++.
T Consensus       208 Fs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~  287 (378)
T PRK15001        208 FSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI  287 (378)
T ss_pred             cCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE
Confidence            4433333333444444432 236999999999999999987  5679999999999999999998766432  3689999


Q ss_pred             cccCCCCCCCCeeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          164 ADFFTWCPTELFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       164 ~d~~~~~~~~~fD~v~~~~~~~~~---~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .|.....+..+||+|+++.+|+..   ++.....++..+.++|+|||.++++.
T Consensus       288 ~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        288 NNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             ccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            998775555689999999888653   33456788999999999999999885

>PRK04266 fibrillarin; Provisional

Probab=99.59  E-value=5.7e-14  Score=115.01  Aligned_cols=135  Identities=20%  Similarity=0.222  Sum_probs=95.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v~  179 (274)
                      ..++.+|||+|||+|..+..+++.  ..+|+++|+++.+++.+.+++...   .++.++.+|+..+    ...++||+|+
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEE
Confidence            345679999999999999999883  358999999999999887776543   4689999998652    1135699998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc-CCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      +...    ++.....+++++.++|||||.+++.... ..+... .+... .++..++++++||+.+...+.
T Consensus       147 ~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-~~~~~-~~~~~~~l~~aGF~~i~~~~l  211 (226)
T PRK04266        147 QDVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-DPKEI-FKEEIRKLEEGGFEILEVVDL  211 (226)
T ss_pred             ECCC----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-CHHHH-HHHHHHHHHHcCCeEEEEEcC
Confidence            5322    1223345689999999999999984322 111111 11111 234569999999999988774

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.58  E-value=5.6e-15  Score=124.16  Aligned_cols=106  Identities=24%  Similarity=0.317  Sum_probs=85.9

Q ss_pred             CCCeEEEEcCCcchh----HHHhhC-------CCCeEEEEeCChHHHHHHHHHhhcC-----------------------
Q 024008          108 PKGRALVPGCGTGYD----VVAMAS-------PERYVVGLEISDIAIKKAEELSSSL-----------------------  153 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~----~~~l~~-------~~~~v~~iD~s~~~~~~a~~~~~~~-----------------------  153 (274)
                      ++.+|+|+|||+|..    ++.+++       .+.+|+|+|+|+.+++.|++.....                       
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            346999999999974    344433       1468999999999999999864210                       


Q ss_pred             ---CCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          154 ---PNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       154 ---~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                         ....+|+|.++|+.+.. +.++||+|+|.++++|++++....++.+++++|+|||++++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence               01246899999999844 4789999999999999988888899999999999999999865

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.58  E-value=2.2e-13  Score=119.33  Aligned_cols=127  Identities=23%  Similarity=0.268  Sum_probs=99.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C-CCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~fD~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..++.  ++.+++++|+|+.+++.|+++....+  .+++++.+|+++. . ..++||+|+++.+
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPP  328 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMPSEGKWDIIVSNPP  328 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccccCCCccEEEECCC
Confidence            456999999999999998875  57799999999999999999998765  3799999999763 2 2457999999886


Q ss_pred             ccccCh-----------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008          184 FCAIEP-----------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       184 ~~~~~~-----------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  240 (274)
                      +..-.+                       +....+++.+.+.|+|||.+++... .          ...+.+.+++++.|
T Consensus       329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~----------~Q~e~V~~ll~~~G  397 (423)
T PRK14966        329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-F----------DQGAAVRGVLAENG  397 (423)
T ss_pred             CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-c----------cHHHHHHHHHHHCC
Confidence            532100                       1235777888899999999876541 1          14678999999999


Q ss_pred             CcEEEEe
Q 024008          241 FQAISIV  247 (274)
Q Consensus       241 f~~~~~~  247 (274)
                      |..+.+.
T Consensus       398 f~~v~v~  404 (423)
T PRK14966        398 FSGVETL  404 (423)
T ss_pred             CcEEEEE
Confidence            9876664

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.57  E-value=1.2e-14  Score=107.15  Aligned_cols=105  Identities=24%  Similarity=0.321  Sum_probs=88.3

Q ss_pred             CCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024008          109 KGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~~  184 (274)
                      +.+|||+|||+|..+..+++.+ .+++++|+++.+++.++.++...+...+++++.+|+...   .+.++||+|+++..+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            3589999999999999999877 899999999999999999999988878899999999873   567899999999888


Q ss_pred             cccCh------hHHHHHHHHHHhcccCCcEEEEEE
Q 024008          185 CAIEP------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~------~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .....      .....+++++.++|+|||.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            75321      234688999999999999988765

...

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.57  E-value=1.2e-13  Score=118.36  Aligned_cols=127  Identities=23%  Similarity=0.269  Sum_probs=100.8

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc-
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-  186 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~-  186 (274)
                      .+|||+|||+|..+..++.  ++.+++++|+|+.+++.|++++...++.++++++.+|+.+..+.++||+|+++.++.. 
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            6899999999999999887  4679999999999999999999888776789999999977555568999999865421 


Q ss_pred             -----cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          187 -----IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       187 -----~~~-----------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                           +++                 +....++..+.+.|+|||.+++...            .+.+++.+++...||.-.
T Consensus       215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g------------~~~~~~~~~~~~~~~~~~  282 (307)
T PRK11805        215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG------------NSRVHLEEAYPDVPFTWL  282 (307)
T ss_pred             cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC------------cCHHHHHHHHhhCCCEEE
Confidence                 110                 2236788999999999999988541            134568888888887665


Q ss_pred             EEee
Q 024008          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      ....
T Consensus       283 ~~~~  286 (307)
T PRK11805        283 EFEN  286 (307)
T ss_pred             EecC
Confidence            5444

>PRK05785 hypothetical protein; Provisional

Probab=99.57  E-value=3.1e-14  Score=117.04  Aligned_cols=88  Identities=14%  Similarity=0.110  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~  185 (274)
                      ++.+|||+|||||..+..+++. +.+|+|+|+|+++++.|++..         .++++|+.. +.++++||+|++..+++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~  121 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALH  121 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhh
Confidence            4679999999999999999886 679999999999999998642         356788877 55678999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPD  206 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~g  206 (274)
                      +++  +...+++++.++|+|.
T Consensus       122 ~~~--d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        122 ASD--NIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             ccC--CHHHHHHHHHHHhcCc
Confidence            885  4567999999999994

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.57  E-value=1.1e-13  Score=111.68  Aligned_cols=123  Identities=19%  Similarity=0.171  Sum_probs=96.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~  180 (274)
                      ..++.+|||+|||+|..+..+++   ++.+|+++|+++.+++.+++++...++.+++.++.+|..+..  ..+.||.|++
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            34568999999999999988765   346999999999999999999888775568999999987632  2368999997


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      ....     .....+++.+.+.|+|||++++.....          .+..+..+.++++||..
T Consensus       118 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~----------~~~~~~~~~l~~~g~~~  165 (198)
T PRK00377        118 GGGS-----EKLKEIISASWEIIKKGGRIVIDAILL----------ETVNNALSALENIGFNL  165 (198)
T ss_pred             CCCc-----ccHHHHHHHHHHHcCCCcEEEEEeecH----------HHHHHHHHHHHHcCCCe
Confidence            5421     234678899999999999998744211          14678888999999943

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.57  E-value=1.7e-13  Score=116.72  Aligned_cols=127  Identities=23%  Similarity=0.297  Sum_probs=100.1

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      .+|||+|||+|..+..++.  ++.+++++|+++.+++.|++++...+..++++|+.+|+.+..+.++||+|+++..+...
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            6899999999999999987  45799999999999999999998877766799999999886555589999998544221


Q ss_pred             C------------h-----------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh-cCCCcE
Q 024008          188 E------------P-----------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ-PMGFQA  243 (274)
Q Consensus       188 ~------------~-----------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~  243 (274)
                      .            +           +....++..+.++|+|||++++.....           ..+.+.+++. ..||..
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------q~~~~~~~~~~~~~~~~  264 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----------QQKSLKELLRIKFTWYD  264 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------HHHHHHHHHHhcCCCce
Confidence            0            0           135678899999999999988766211           3567788888 468876


Q ss_pred             EEEe
Q 024008          244 ISIV  247 (274)
Q Consensus       244 ~~~~  247 (274)
                      +.+.
T Consensus       265 ~~~~  268 (284)
T TIGR00536       265 VENG  268 (284)
T ss_pred             eEEe
Confidence            6553

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.57  E-value=6.3e-14  Score=121.77  Aligned_cols=128  Identities=16%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..++..+.+++|+|+++.++..++.++...+..+ +.+..+|+.+. .+.+.||+|+++.++.
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg  259 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYG  259 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCc
Confidence            456799999999999999888889999999999999999999998877654 88999999883 3457899999987764


Q ss_pred             cc-------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          186 AI-------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       186 ~~-------~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ..       ..+....+++.+.+.|+|||++++...             +..++.++++.+|| ++.....
T Consensus       260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~-------------~~~~~~~~~~~~g~-i~~~~~~  316 (329)
T TIGR01177       260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP-------------TRIDLESLAEDAFR-VVKRFEV  316 (329)
T ss_pred             CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc-------------CCCCHHHHHhhcCc-chheeee
Confidence            31       113357899999999999999888762             23366778999999 7665553

This family is found exclusively in the Archaea.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.56  E-value=6e-14  Score=113.79  Aligned_cols=105  Identities=21%  Similarity=0.132  Sum_probs=85.0

Q ss_pred             HHhcCC-CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCe
Q 024008          101 LHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELF  175 (274)
Q Consensus       101 ~~~~~~-~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~f  175 (274)
                      +++.+. .++.+|||+|||+|..+..+++   .+.+|+++|+++++++.|++++...+..++++++.+|..+. ....+|
T Consensus        64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~f  143 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPF  143 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCc
Confidence            334333 3557999999999999988876   24699999999999999999998877666799999999873 334689


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      |+|++..++.+++        +++.+.|+|||++++..
T Consensus       144 D~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        144 DAIIVTAAASTIP--------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence            9999988877653        46788999999998865

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.56  E-value=1.8e-13  Score=115.87  Aligned_cols=140  Identities=23%  Similarity=0.232  Sum_probs=97.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-----CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~  181 (274)
                      +..+|||+|||+|..+..+++.     +..++|+|+|+.++..|+++.      +++.+.++|+.+ +.++++||+|++.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence            4478999999999999888752     247999999999999998765      358899999887 4566799999975


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------C-CCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------V-GGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      ...         ..+.++.++|+|||++++...+....      . .....+....     ....||+++..+.....+.
T Consensus       159 ~~~---------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~~~~-----~~~~gF~~~~~~~~~~~~~  224 (272)
T PRK11088        159 YAP---------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHAPEA-----EQLEGFELQHSERLAYPMR  224 (272)
T ss_pred             cCC---------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccccch-----hhccCCCeeeEEEEEEEEE
Confidence            431         13478999999999999987554321      0 0111111111     1235899888887666665


Q ss_pred             CccchhHHHHhhhhh
Q 024008          255 PRKGREKLGRWKRSV  269 (274)
Q Consensus       255 ~~~~~~~~~~~~~~~  269 (274)
                      . ++.+.+. |.++.
T Consensus       225 l-~~~~~~~-ll~mt  237 (272)
T PRK11088        225 L-TGSEAVA-LLQMT  237 (272)
T ss_pred             e-CHHHHHH-HHcCC
Confidence            4 3444444 66654

>TIGR03438 probable methyltransferase

Probab=99.56  E-value=1.3e-13  Score=118.17  Aligned_cols=104  Identities=21%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCC----CeeEE
Q 024008          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE----LFDLI  178 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~----~fD~v  178 (274)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+|+++++.+++++....-..++.++++|+.+.  .+..    ...++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            4579999999999999988874   6899999999999999998876532123577889999762  2221    23345


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      ++..+++++++++...+++++++.|+|||.+++
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            555678888888888999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.56  E-value=2.7e-13  Score=115.03  Aligned_cols=128  Identities=25%  Similarity=0.321  Sum_probs=99.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..++.  +..+++++|+++.+++.++++.. .....++.++.+|+....+.++||+|+++..+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            3457999999999999999987  45799999999999999999987 22335799999999875556789999998665


Q ss_pred             cccC------h------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008          185 CAIE------P------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       185 ~~~~------~------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  240 (274)
                      ....      +                  +....++.++.++|+|||.+++... .          ...+++.++++..|
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~----------~~~~~~~~~l~~~g  254 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-Y----------DQGEAVRALLAAAG  254 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-c----------hHHHHHHHHHHhCC
Confidence            3211      1                  1235678888899999999988541 1          13567999999999


Q ss_pred             CcEEEE
Q 024008          241 FQAISI  246 (274)
Q Consensus       241 f~~~~~  246 (274)
                      |..+.+
T Consensus       255 f~~v~~  260 (275)
T PRK09328        255 FADVET  260 (275)
T ss_pred             CceeEE
Confidence            986555

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.55  E-value=9.9e-14  Score=126.53  Aligned_cols=128  Identities=20%  Similarity=0.291  Sum_probs=101.7

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      +.+|||+|||+|..+..++.  ++.+++++|+|+.+++.|+++....++.++++++.+|+....+.++||+|+++..+..
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence            36899999999999998876  5789999999999999999999888777789999999877555568999999865432


Q ss_pred             cCh------------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024008          187 IEP------------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       187 ~~~------------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~  242 (274)
                      .+.                        +....++..+.++|+|||.+++.. +.          ...+.+.++++..||.
T Consensus       219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~----------~q~~~v~~~~~~~g~~  287 (506)
T PRK01544        219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GF----------KQEEAVTQIFLDHGYN  287 (506)
T ss_pred             chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CC----------chHHHHHHHHHhcCCC
Confidence            110                        123567788899999999988754 11          1467889999999998


Q ss_pred             EEEEe
Q 024008          243 AISIV  247 (274)
Q Consensus       243 ~~~~~  247 (274)
                      .+.+.
T Consensus       288 ~~~~~  292 (506)
T PRK01544        288 IESVY  292 (506)
T ss_pred             ceEEE
Confidence            76654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.54  E-value=1.3e-13  Score=102.50  Aligned_cols=100  Identities=17%  Similarity=0.108  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++  ++.+++++|+++.+++.++++....+. .+++++.+|+...  ...++||.|++...
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEECCc
Confidence            457999999999999999987  357999999999999999998877654 3689998987642  22368999998664


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..     ....+++.+.+.|+|||.+++..
T Consensus        98 ~~-----~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        98 GG-----LLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             ch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence            33     33578999999999999998865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=5.4e-13  Score=112.74  Aligned_cols=125  Identities=26%  Similarity=0.311  Sum_probs=99.3

Q ss_pred             eEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024008          111 RALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  188 (274)
                      +|||+|||+|..++.++..  .++|+|+|+|+.+++.|++|+..+++ .++.++.+|++..... +||+|++|..+-.-.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG-KFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC-ceeEEEeCCCCCCCc
Confidence            7999999999999999984  45999999999999999999999987 6677777798876544 999999997753221


Q ss_pred             -----h------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEE
Q 024008          189 -----P------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAI  244 (274)
Q Consensus       189 -----~------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-f~~~  244 (274)
                           +                  +....++..+.+.|+|||.+++..-..           ..+.+.+++...| |..+
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-----------q~~~v~~~~~~~~~~~~v  259 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-----------QGEAVKALFEDTGFFEIV  259 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-----------cHHHHHHHHHhcCCceEE
Confidence                 1                  123678889999999999888866211           4788999999999 5544


Q ss_pred             EEee
Q 024008          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      ....
T Consensus       260 ~~~~  263 (280)
T COG2890         260 ETLK  263 (280)
T ss_pred             EEEe
Confidence            4433

>PHA03411 putative methyltransferase; Provisional

Probab=99.53  E-value=3.1e-13  Score=111.97  Aligned_cols=138  Identities=17%  Similarity=0.215  Sum_probs=102.7

Q ss_pred             ccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024008           94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  171 (274)
                      |...+..++.. .....+|||+|||+|..+..++.  .+.+++++|+++.+++.++++.      ++++++.+|+.....
T Consensus        51 P~~i~~~f~~~-~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~  123 (279)
T PHA03411         51 PEGLAWDFTID-AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES  123 (279)
T ss_pred             CHHHHHHHHhc-cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc
Confidence            34444444322 23457999999999999887766  3579999999999999999875      358899999988655


Q ss_pred             CCCeeEEEecccccccChhH------------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc--cCHHH
Q 024008          172 TELFDLIFDYTFFCAIEPEM------------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK--VSVSD  231 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~~~~~------------------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~--~~~~~  231 (274)
                      ..+||+|+++.++.+.+...                  +...+.....+|+|+|.+++.-.+.      +-|+  .+.++
T Consensus       124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~------~~y~~sl~~~~  197 (279)
T PHA03411        124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR------PYYDGTMKSNK  197 (279)
T ss_pred             cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc------ccccccCCHHH
Confidence            67899999999998764321                  2456677788999999766653211      1222  57999


Q ss_pred             HHHHHhcCCCcEE
Q 024008          232 YEEVLQPMGFQAI  244 (274)
Q Consensus       232 ~~~~~~~~Gf~~~  244 (274)
                      +.++++++||..-
T Consensus       198 y~~~l~~~g~~~~  210 (279)
T PHA03411        198 YLKWSKQTGLVTY  210 (279)
T ss_pred             HHHHHHhcCcEec
Confidence            9999999999763

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.3e-13  Score=111.68  Aligned_cols=126  Identities=26%  Similarity=0.261  Sum_probs=105.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  182 (274)
                      ..++.+|||.|+|+|.++.+|+.   +..+|+.+|+.++.++.|++|+...++.+++++..+|+.+....+.||.|+   
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~---  168 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF---  168 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEE---
Confidence            45678999999999999999997   446999999999999999999999888888999999999966566999999   


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                          ++-++.+++++++.+.|+|||.+++...          +.-..+...+.+++.||..++..+
T Consensus       169 ----LDmp~PW~~le~~~~~Lkpgg~~~~y~P----------~veQv~kt~~~l~~~g~~~ie~~E  220 (256)
T COG2519         169 ----LDLPDPWNVLEHVSDALKPGGVVVVYSP----------TVEQVEKTVEALRERGFVDIEAVE  220 (256)
T ss_pred             ----EcCCChHHHHHHHHHHhCCCcEEEEEcC----------CHHHHHHHHHHHHhcCccchhhhe
Confidence                4445668999999999999999988772          222456667778888987665544

>PRK06922 hypothetical protein; Provisional

Probab=99.53  E-value=8.4e-14  Score=127.27  Aligned_cols=106  Identities=18%  Similarity=0.226  Sum_probs=88.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++  ++.+++|+|+|+.+++.|+++....+  .++.++++|..+.   .++++||+|+++
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            3578999999999999888876  67899999999999999998875544  3588899998763   456789999999


Q ss_pred             cccccc-----------ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          182 TFFCAI-----------EPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~-----------~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+++++           +.+....+++++.++|||||.+++.+.
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            888764           234668899999999999999999874

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.53  E-value=2.6e-13  Score=109.24  Aligned_cols=135  Identities=14%  Similarity=0.144  Sum_probs=98.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++ .+..++|+|+++++++.++.+        +++++.+|+..   ..++++||+|+++.+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~   84 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQT   84 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence            457999999999999988876 456889999999999988642        36788888865   234678999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccC--------------CC-C--------CCCCCcccCHHHHHHHHhcCC
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI--------------SD-H--------VGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~--------------~~-~--------~~~~~~~~~~~~~~~~~~~~G  240 (274)
                      ++++++  ...+++++.+.+++   +++.....              .. .        ......+.+.+++.++++++|
T Consensus        85 l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G  159 (194)
T TIGR02081        85 LQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN  159 (194)
T ss_pred             hHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence            999853  45677888776553   33321110              00 0        000123468999999999999


Q ss_pred             CcEEEEeecccccCC
Q 024008          241 FQAISIVDNKLAIGP  255 (274)
Q Consensus       241 f~~~~~~~~~~~~~~  255 (274)
                      |+++..........+
T Consensus       160 f~v~~~~~~~~~~~~  174 (194)
T TIGR02081       160 LRILDRAAFDVDGRG  174 (194)
T ss_pred             CEEEEEEEecccccc
Confidence            999998887654444

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.52  E-value=2.5e-13  Score=107.05  Aligned_cols=127  Identities=17%  Similarity=0.210  Sum_probs=99.5

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccccc
Q 024008          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~~~  186 (274)
                      +.-|||||||+|..+..+..+|..++|+|+|+.|++.|.+..-+      -.++.+|+-.  ++.++.||.+++..++++
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQW  124 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAVQW  124 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence            47899999999999999999999999999999999999974322      2578888877  677899999999877655


Q ss_pred             c---------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          187 I---------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       187 ~---------~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      +         +..-+..++..++.+|++|++.++-.++.++.        ..+.+.+....+||.---+.++
T Consensus       125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~--------q~d~i~~~a~~aGF~GGlvVd~  188 (270)
T KOG1541|consen  125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA--------QIDMIMQQAMKAGFGGGLVVDW  188 (270)
T ss_pred             ecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH--------HHHHHHHHHHhhccCCceeeec
Confidence            4         12334677889999999999999988766433        4566667777778765444444

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.52  E-value=2.4e-13  Score=106.18  Aligned_cols=134  Identities=17%  Similarity=0.196  Sum_probs=102.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||.|.++..|.+ .+...+|+|++++.+..+..+-        +.++++|+..   ..++++||.|+.+.
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--------v~Viq~Dld~gL~~f~d~sFD~VIlsq   83 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--------VSVIQGDLDEGLADFPDQSFDYVILSQ   83 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--------CCEEECCHHHhHhhCCCCCccEEehHh
Confidence            4678999999999999999988 7889999999999988887663        7789999987   56789999999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-----------------CC-----CCCCC-cccCHHHHHHHHhcC
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-----------------DH-----VGGPP-YKVSVSDYEEVLQPM  239 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~-----------------~~-----~~~~~-~~~~~~~~~~~~~~~  239 (274)
                      +++++.  ....+++++.++   |...+++..+-.                 ..     -.+|+ +..|..++.++.++.
T Consensus        84 tLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~  158 (193)
T PF07021_consen   84 TLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL  158 (193)
T ss_pred             HHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence            999984  446777777665   555555442210                 00     11122 236999999999999


Q ss_pred             CCcEEEEeeccccc
Q 024008          240 GFQAISIVDNKLAI  253 (274)
Q Consensus       240 Gf~~~~~~~~~~~~  253 (274)
                      |+++.+-.......
T Consensus       159 ~i~I~~~~~~~~~~  172 (193)
T PF07021_consen  159 GIRIEERVFLDGGR  172 (193)
T ss_pred             CCEEEEEEEEcCCC
Confidence            99998877755443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.51  E-value=9.4e-13  Score=102.26  Aligned_cols=125  Identities=21%  Similarity=0.223  Sum_probs=103.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEecc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~fD~v~~~~  182 (274)
                      ..++.+++|||||||..+..++.  +..+++++|-++++++..++|....+ .+|+.++.+|+-+..++. .+|.|+...
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~~~daiFIGG  110 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDLPSPDAIFIGG  110 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCCCCCEEEECC
Confidence            56678999999999999999984  77899999999999999999999998 478999999998854443 799999877


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC-cEEEEe
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF-QAISIV  247 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf-~~~~~~  247 (274)
                      . ..+     +.+++.+...|+|||+++...-..          -+.....+.+++.|+ +++++.
T Consensus       111 g-~~i-----~~ile~~~~~l~~ggrlV~naitl----------E~~~~a~~~~~~~g~~ei~~v~  160 (187)
T COG2242         111 G-GNI-----EEILEAAWERLKPGGRLVANAITL----------ETLAKALEALEQLGGREIVQVQ  160 (187)
T ss_pred             C-CCH-----HHHHHHHHHHcCcCCeEEEEeecH----------HHHHHHHHHHHHcCCceEEEEE
Confidence            6 333     578999999999999999865322          257788889999999 554443

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=2.4e-13  Score=107.85  Aligned_cols=100  Identities=24%  Similarity=0.275  Sum_probs=88.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||||||+|+.+..+++...+|+.+|..++..+.|++++...++. ||.++++|... +....+||.|+.....
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPyD~I~Vtaaa  148 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPYDRIIVTAAA  148 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCcCEEEEeecc
Confidence            456689999999999999999997679999999999999999999999875 49999999988 5666899999998888


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ..+|        +.+.+.|++||++++...
T Consensus       149 ~~vP--------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         149 PEVP--------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCC--------HHHHHhcccCCEEEEEEc
Confidence            8776        457888999999999774

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.50  E-value=1.5e-13  Score=110.53  Aligned_cols=128  Identities=20%  Similarity=0.188  Sum_probs=96.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~  181 (274)
                      ...+|||||||+|..+..+++  +..+++|+|+++.+++.|+++....++. +++++.+|+..    ..+.+.+|.|+++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            346899999999999998887  5679999999999999999998877664 79999999975    2345689999987


Q ss_pred             ccccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEEEE
Q 024008          182 TFFCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAISI  246 (274)
Q Consensus       182 ~~~~~~~~~~------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-f~~~~~  246 (274)
                      ....+.....      ...+++.+.++|+|||.+++.....          ...+++.+.+..+| |..+..
T Consensus        95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~----------~~~~~~~~~~~~~~~f~~~~~  156 (194)
T TIGR00091        95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE----------PLFEDMLKVLSENDLFENTSK  156 (194)
T ss_pred             CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH----------HHHHHHHHHHHhCCCeEeccc
Confidence            5433221110      1468999999999999998876221          12455666777766 776554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.50  E-value=3.3e-13  Score=109.94  Aligned_cols=98  Identities=20%  Similarity=0.186  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++   .+.+|+++|+++++++.+++++...+. .+++++.+|... ..+.++||+|++..
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~~  153 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVTA  153 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEECC
Confidence            4568999999999999988876   346999999999999999999987765 479999999876 34457899999877


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ....++        ..+.+.|+|||++++..
T Consensus       154 ~~~~~~--------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        154 AGPDIP--------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             Ccccch--------HHHHHhhCCCcEEEEEE
Confidence            655442        45677899999988865

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.50  E-value=7e-13  Score=115.13  Aligned_cols=102  Identities=20%  Similarity=0.261  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++|||+|||+|.++..+++  ++.+++++|+++.+++.+++++..+++.  .+++..|..... .++||+|+++.+||.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~-~~~fDlIvsNPPFH~  273 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI-KGRFDMIISNPPFHD  273 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc-CCCccEEEECCCccC
Confidence            46899999999999999887  4569999999999999999999887653  567788876643 578999999999886


Q ss_pred             c---ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          187 I---EPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       187 ~---~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .   +......++.++.+.|+|||.++++.
T Consensus       274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             CccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            3   23456889999999999999998876

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.49  E-value=4e-13  Score=109.87  Aligned_cols=99  Identities=25%  Similarity=0.226  Sum_probs=81.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~  181 (274)
                      ..++.+|||+|||+|..+..+++.   ..+|+++|+++++++.|++++...++ ++++++.+|.... ...++||+|++.
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~  153 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVT  153 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEc
Confidence            345679999999999999988873   34699999999999999999988876 5799999999773 334689999987


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ....+++        +.+.+.|+|||++++..
T Consensus       154 ~~~~~~~--------~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       154 AAGPKIP--------EALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCccccc--------HHHHHhcCcCcEEEEEE
Confidence            6655442        45788999999998865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PTZ00146 fibrillarin; Provisional

Probab=99.49  E-value=6.9e-13  Score=111.10  Aligned_cols=132  Identities=17%  Similarity=0.146  Sum_probs=93.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~  179 (274)
                      .++.+|||+|||+|.++..+++.   ...|+++|+++.+.+...+.+...   .++.++..|+..+.    +.+.||+|+
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~  207 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF  207 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence            45679999999999999999883   358999999987665544443322   46889999986531    345799999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH----HHHHhcCCCcEEEEeecc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY----EEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Gf~~~~~~~~~  250 (274)
                      +...    .+++...++.++.+.|||||.+++...... ...++    +++++    .++|+++||+.++..+..
T Consensus       208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI~ika~~-id~g~----~pe~~f~~ev~~L~~~GF~~~e~v~L~  273 (293)
T PTZ00146        208 ADVA----QPDQARIVALNAQYFLKNGGHFIISIKANC-IDSTA----KPEVVFASEVQKLKKEGLKPKEQLTLE  273 (293)
T ss_pred             EeCC----CcchHHHHHHHHHHhccCCCEEEEEEeccc-cccCC----CHHHHHHHHHHHHHHcCCceEEEEecC
Confidence            8763    234555677789999999999999432222 22222    33333    488999999988777643

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.48  E-value=2.2e-13  Score=106.32  Aligned_cols=137  Identities=21%  Similarity=0.277  Sum_probs=104.0

Q ss_pred             CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceE-EEEcccCCC--CCCCCeeEEEeccccc
Q 024008          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFTW--CPTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~--~~~~~fD~v~~~~~~~  185 (274)
                      ..|||+|||||.+-.+.-- ++..|+++|.++.+-+.+.+.+.++. -.++. |+.++..+.  .++.+||.|++..+++
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC  156 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLVLC  156 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence            5789999999999877654 88899999999999999998887763 24566 999999884  4789999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------CCCCcc------cCHHHHHHHHhcCCCcEEEEeec
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------GGPPYK------VSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~---------~~~~~~------~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ...  +..+.+.++.++|+|||++++.++....-.         ..+.++      .=..+..+.++.+.|...+....
T Consensus       157 Sve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~  233 (252)
T KOG4300|consen  157 SVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRF  233 (252)
T ss_pred             ccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhcc
Confidence            774  457889999999999999999887654220         001000      11345566777777877665543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.48  E-value=1.3e-12  Score=109.09  Aligned_cols=126  Identities=17%  Similarity=0.184  Sum_probs=97.8

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEecccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFF  184 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~~~~  184 (274)
                      .+|||+|||+|..+..+++  ++.+++++|+++.+++.|++++..++    ++++.+|+.+..+   .++||+|+++..+
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy  163 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPY  163 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence            5899999999999998876  56799999999999999999987654    4789999876432   3579999999775


Q ss_pred             cc------cChh------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008          185 CA------IEPE------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       185 ~~------~~~~------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  240 (274)
                      ..      ++++                  ....++..+.++|+|||++++.....           ...++.++++++|
T Consensus       164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-----------~~~~v~~~l~~~g  232 (251)
T TIGR03704       164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-----------QAPLAVEAFARAG  232 (251)
T ss_pred             CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc-----------hHHHHHHHHHHCC
Confidence            42      1111                  13577888889999999999775211           4568899999999


Q ss_pred             CcEEEEeecc
Q 024008          241 FQAISIVDNK  250 (274)
Q Consensus       241 f~~~~~~~~~  250 (274)
                      |...-....+
T Consensus       233 ~~~~~~~~~~  242 (251)
T TIGR03704       233 LIARVASSEE  242 (251)
T ss_pred             CCceeeEccc
Confidence            9876665543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.47  E-value=1.1e-12  Score=107.06  Aligned_cols=129  Identities=24%  Similarity=0.201  Sum_probs=94.4

Q ss_pred             chhHhhhcCCCCccCCC--ccHHHHHH-HhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024008           77 GWEKCWEEGLTPWDIGQ--PAPIIVHL-HQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus        77 ~w~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~  152 (274)
                      ++...|.....+|....  ..+.+... +... ..++.+|||+|||+|..+..+++...+++++|+++++++.+++++..
T Consensus        43 ~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~  122 (212)
T PRK00312         43 FKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ  122 (212)
T ss_pred             HHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH
Confidence            34455655555544332  24444333 3333 34558999999999999988877666999999999999999999887


Q ss_pred             CCCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          153 LPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       153 ~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+.. ++++..+|..+.. ..++||+|++...+.++        .+.+.+.|+|||++++...
T Consensus       123 ~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        123 LGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CCCC-ceEEEECCcccCCCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence            7653 5999999987643 34789999988766544        2457889999999988764

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=1.3e-12  Score=109.03  Aligned_cols=124  Identities=19%  Similarity=0.198  Sum_probs=96.5

Q ss_pred             ccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc
Q 024008           89 WDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD  165 (274)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  165 (274)
                      |.......--.-+++.+.. ...+|||+|||.|.++..+++  +..+++.+|++..+++.|++++..++..+ ..+...|
T Consensus       138 FS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~  216 (300)
T COG2813         138 FSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASN  216 (300)
T ss_pred             CcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEec
Confidence            4444444444445554433 346999999999999999998  55699999999999999999999887643 3778888


Q ss_pred             cCCCCCCCCeeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          166 FFTWCPTELFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       166 ~~~~~~~~~fD~v~~~~~~~~~---~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ......+ +||+|+++..||.=   .....++++....+.|++||.+.++..
T Consensus       217 ~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         217 LYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             ccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            8775544 99999999999862   223345899999999999999988875

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.46  E-value=6.4e-14  Score=110.94  Aligned_cols=146  Identities=24%  Similarity=0.286  Sum_probs=109.7

Q ss_pred             HHHHHhcCCCCC-CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCC
Q 024008           98 IVHLHQSGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTE  173 (274)
Q Consensus        98 ~~~~~~~~~~~~-~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~  173 (274)
                      +.+++......+ .++||+|||||..+..+.....+++|+|+|.+|+++|.++-.-      -++.++|...   ...++
T Consensus       114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~Fl~~~~~e  187 (287)
T COG4976         114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVLFLEDLTQE  187 (287)
T ss_pred             HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch------HHHHHHHHHHHhhhccCC
Confidence            445555443333 6999999999999999988888999999999999999876422      1233444332   24467


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---CCC--CcccCHHHHHHHHhcCCCcEEEEee
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---GGP--PYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +||+|.+..|+.++  ..+..++--....|+|||.+.++.-...+..   -++  .|-.+...+..+++..||.++.++.
T Consensus       188 r~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~  265 (287)
T COG4976         188 RFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED  265 (287)
T ss_pred             cccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence            89999999999998  5677889999999999999887653332221   111  2446899999999999999999988


Q ss_pred             ccc
Q 024008          249 NKL  251 (274)
Q Consensus       249 ~~~  251 (274)
                      ...
T Consensus       266 tti  268 (287)
T COG4976         266 TTI  268 (287)
T ss_pred             ccc
Confidence            554

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=7.1e-13  Score=110.35  Aligned_cols=100  Identities=24%  Similarity=0.330  Sum_probs=86.4

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      .+|||||+|+|..+..+++  ++.+++.+|. |.+++.+++       .++++++.+|+++..|.  +|+|+..+++|++
T Consensus       102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vLh~~  171 (241)
T PF00891_consen  102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVLHDW  171 (241)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSGGGS
T ss_pred             cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhhhhc
Confidence            6899999999999999988  8889999998 889999988       37899999999966655  9999999999999


Q ss_pred             ChhHHHHHHHHHHhcccCC--cEEEEEEccCCCC
Q 024008          188 EPEMRAAWAQKIKDFLKPD--GELITLMFPISDH  219 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~g--G~l~~~~~~~~~~  219 (274)
                      +++....+++++++.|+||  |+|+|.++-..+.
T Consensus       172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~  205 (241)
T PF00891_consen  172 SDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD  205 (241)
T ss_dssp             -HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred             chHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence            9999999999999999999  9999988765544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.40  E-value=2.6e-12  Score=106.12  Aligned_cols=102  Identities=17%  Similarity=0.234  Sum_probs=84.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD  176 (274)
                      .++.+|||+|||+|..+..++.   .+.+++++|+++++++.|++++...++.++++++.+|+.+..       +.++||
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            4568999999999998887776   356999999999999999999999998889999999998732       246899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +|+..     .+.+....+++.+.+.|+|||.+++-.
T Consensus       147 ~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        147 FAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             EEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            99853     233556688999999999999988743

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.39  E-value=3.6e-12  Score=120.85  Aligned_cols=135  Identities=22%  Similarity=0.164  Sum_probs=104.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC--CCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC--PTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~~~~fD~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..++..|+ +|+++|+|+.+++.|++|+..+++. ++++++.+|+++..  ..++||+|++...
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            468999999999999999998776 6999999999999999999988875 58999999997732  2468999998765


Q ss_pred             ccccC---------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          184 FCAIE---------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       184 ~~~~~---------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      ...-.         ......++..+.++|+|||.+++.....         .++  ...+.+.++||.+..+.....+.
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~---------~~~--~~~~~~~~~g~~~~~i~~~~~~~  685 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR---------GFK--MDEEGLAKLGLKAEEITAKTLPP  685 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc---------cCC--hhHHHHHhCCCeEEEEecCCCCC
Confidence            32110         1234678888999999999988865322         112  23778888999998888755433

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.39  E-value=8e-12  Score=100.70  Aligned_cols=125  Identities=16%  Similarity=0.122  Sum_probs=89.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++  ++.+++++|+++.+++.+++++...+. .+++++.+|+.+.  .....+|.++...
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~  117 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG  117 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence            3557999999999999998875  567999999999999999999887765 4699999998652  1123456665421


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh---cCCCcEEEEee
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ---PMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Gf~~~~~~~  248 (274)
                      .      .....+++++.+.|+|||++++......          +..+..+.++   ..|++++++..
T Consensus       118 ~------~~~~~~l~~~~~~LkpgG~li~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  170 (196)
T PRK07402        118 G------RPIKEILQAVWQYLKPGGRLVATASSLE----------GLYAISEGLAQLQARNIEVVQAAV  170 (196)
T ss_pred             C------cCHHHHHHHHHHhcCCCeEEEEEeecHH----------HHHHHHHHHHhcCCCCceEEEEEh
Confidence            1      2346789999999999999998863221          2233445554   44677766543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.39  E-value=1.2e-11  Score=100.48  Aligned_cols=119  Identities=14%  Similarity=0.157  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~~  174 (274)
                      .++.+|||+|||+|.++..+++.   +.+|+++|+++.         ..  . .+++++++|+...         ...++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~--~-~~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DP--I-VGVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cC--C-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence            45679999999999999988773   359999999881         11  1 3589999999873         44678


Q ss_pred             eeEEEecccccccChh---------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          175 FDLIFDYTFFCAIEPE---------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~---------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ||+|++..+.+.....         ....+++.+.++|+|||.+++..+...          ...++...++. .|..+.
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~----------~~~~~l~~l~~-~f~~v~  186 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE----------GFDEYLREIRS-LFTKVK  186 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc----------CHHHHHHHHHh-CceEEE
Confidence            9999998765543211         124688999999999999999775442          23444444433 687776


Q ss_pred             Eee
Q 024008          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       187 ~~K  189 (209)
T PRK11188        187 VRK  189 (209)
T ss_pred             EEC
Confidence            643

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=2.4e-11  Score=94.16  Aligned_cols=131  Identities=19%  Similarity=0.154  Sum_probs=98.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ...+.+|+|+|||||.+++..+..|+ +|+++|+++++++.+++|..+.  ..+++|+.+|+....  .++|.++.+..|
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~--~~~dtvimNPPF  118 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR--GKFDTVIMNPPF  118 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC--CccceEEECCCC
Confidence            55677899999999999999988886 8999999999999999999874  367999999998654  678999999988


Q ss_pred             cccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024008          185 CAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       185 ~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~  255 (274)
                      ...-. .+ ..++....+.-   -.++... ..          -+.+-+.+....+|+++........+++.
T Consensus       119 G~~~rhaD-r~Fl~~Ale~s---~vVYsiH-~a----------~~~~f~~~~~~~~G~~v~~~~~~~~~iP~  175 (198)
T COG2263         119 GSQRRHAD-RPFLLKALEIS---DVVYSIH-KA----------GSRDFVEKFAADLGGTVTHIERARFPIPR  175 (198)
T ss_pred             ccccccCC-HHHHHHHHHhh---heEEEee-cc----------ccHHHHHHHHHhcCCeEEEEEEEEEecCc
Confidence            76421 12 23444444432   2333322 11          16889999999999998888766555553

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.38  E-value=3.4e-12  Score=105.24  Aligned_cols=126  Identities=25%  Similarity=0.220  Sum_probs=97.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC---CCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC---PTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---~~~~fD~v  178 (274)
                      ..|+.+|||.|+|+|.++..|++   +..+|+.+|+.++.++.|++++...++.+++++...|+.+ .+   ....+|.|
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav  117 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV  117 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence            45778999999999999999987   5669999999999999999999999998899999999975 22   23679999


Q ss_pred             EecccccccChhHHHHHHHHHHhcc-cCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L-~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +.       |-+..+.++..+.++| ++||++++.....          .......+.+++.||..+++.+
T Consensus       118 fL-------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i----------eQv~~~~~~L~~~gf~~i~~~E  171 (247)
T PF08704_consen  118 FL-------DLPDPWEAIPHAKRALKKPGGRICCFSPCI----------EQVQKTVEALREHGFTDIETVE  171 (247)
T ss_dssp             EE-------ESSSGGGGHHHHHHHE-EEEEEEEEEESSH----------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EE-------eCCCHHHHHHHHHHHHhcCCceEEEECCCH----------HHHHHHHHHHHHCCCeeeEEEE
Confidence            83       3234467889999999 8999999887322          2456667778889998876655

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.38  E-value=2.1e-12  Score=104.29  Aligned_cols=106  Identities=25%  Similarity=0.295  Sum_probs=80.9

Q ss_pred             HHHhcC-CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCC
Q 024008          100 HLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTEL  174 (274)
Q Consensus       100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~  174 (274)
                      .+++.+ ..++.+|||||||+|+.+..++.   +...|+++|.++..++.|++++...+. .++.++.+|... .....+
T Consensus        63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~ap  141 (209)
T PF01135_consen   63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEEAP  141 (209)
T ss_dssp             HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG-S
T ss_pred             HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccCCC
Confidence            344444 44668999999999999988887   344799999999999999999987765 479999999877 444578


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ||.|++......++        ..+.+.|++||++++...
T Consensus       142 fD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  142 FDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred             cCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence            99999988776554        457888999999998764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.37  E-value=7.4e-12  Score=110.70  Aligned_cols=132  Identities=18%  Similarity=0.092  Sum_probs=97.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~fD~v~~  180 (274)
                      ++.+|||+|||+|.++..++..++ +|+++|+++.+++.|++++..+++. .+++++.+|+++..     ..++||+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            467999999999999887666655 9999999999999999999988875 47999999998732     2458999999


Q ss_pred             cccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH----hcCCCcEEEEee
Q 024008          181 YTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL----QPMGFQAISIVD  248 (274)
Q Consensus       181 ~~~~~~~~~-------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Gf~~~~~~~  248 (274)
                      ......-+.       .....++....++|+|||.++++..+.         +++.+++.+++    ..+|-++..+..
T Consensus       300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~---------~~~~~~f~~~v~~aa~~~~~~~~~l~~  369 (396)
T PRK15128        300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG---------LMTSDLFQKIIADAAIDAGRDVQFIEQ  369 (396)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC---------cCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence            876532222       124556677889999999999876433         23455555554    444555544443

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.37  E-value=8.4e-12  Score=108.78  Aligned_cols=105  Identities=19%  Similarity=0.194  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~  182 (274)
                      .+..+||||||+|..+..+++  +...++|+|+++.+++.+.+++...++ .++.++.+|+..   ..+++.+|.|+++.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnF  200 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHF  200 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence            346999999999999999988  577999999999999999999888776 469999999854   46678999999875


Q ss_pred             cccccChhH----HHHHHHHHHhcccCCcEEEEEE
Q 024008          183 FFCAIEPEM----RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~----~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ...+.-...    ...+++.+.++|+|||.+.+..
T Consensus       201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence            533211111    1578999999999999988865

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.36  E-value=4e-12  Score=99.00  Aligned_cols=115  Identities=17%  Similarity=0.119  Sum_probs=88.8

Q ss_pred             EEEeCChHHHHHHHHHhhcC--CCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024008          134 VGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       134 ~~iD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      +|+|+|+++++.|+++....  +...+++++++|+.+ +.++++||+|++..++++++  +...++++++++|||||.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence            48999999999998776432  223479999999988 45567899999999999885  45788999999999999999


Q ss_pred             EEEccCCCCC---------------------CC-C---------CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          211 TLMFPISDHV---------------------GG-P---------PYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       211 ~~~~~~~~~~---------------------~~-~---------~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +.++......                     .. .         ..+.+.+++.++++++||+.+......
T Consensus        79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~  149 (160)
T PLN02232         79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS  149 (160)
T ss_pred             EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence            9988654210                     00 0         112489999999999999988765543

>PLN02672 methionine S-methyltransferase

Probab=99.35  E-value=1.6e-11  Score=119.09  Aligned_cols=131  Identities=21%  Similarity=0.213  Sum_probs=100.7

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCC---------------CcceEEEEcccCCCCC
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPN---------------AKFVSFLKADFFTWCP  171 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~~  171 (274)
                      +.+|||+|||+|..++.+++  +..+++++|+|+.+++.|++|+..+++               .++++|+.+|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            45899999999999999987  456999999999999999999976532               2579999999988543


Q ss_pred             C--CCeeEEEecccccc------cCh------------------------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024008          172 T--ELFDLIFDYTFFCA------IEP------------------------------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~--~~fD~v~~~~~~~~------~~~------------------------------~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .  .+||+|+++..+..      +++                              +....++....++|+|||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            3  36999999876421      110                              112567888889999999888765


Q ss_pred             ccCCCCCCCCCcccCHHHHH-HHHhcCCCcEEEEeecc
Q 024008          214 FPISDHVGGPPYKVSVSDYE-EVLQPMGFQAISIVDNK  250 (274)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~-~~~~~~Gf~~~~~~~~~  250 (274)
                      ...           ..+.+. ++++..||..+.+....
T Consensus       279 G~~-----------q~~~v~~~l~~~~gf~~~~~~~~~  305 (1082)
T PLN02672        279 GGR-----------PGQAVCERLFERRGFRITKLWQTK  305 (1082)
T ss_pred             Ccc-----------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence            211           355677 69999999998777644

>PHA03412 putative methyltransferase; Provisional

Probab=99.35  E-value=2.1e-11  Score=98.94  Aligned_cols=129  Identities=19%  Similarity=0.218  Sum_probs=90.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS-----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  182 (274)
                      .+.+|||+|||+|.++..+++     ...+|+++|+++.+++.|+++.      .++.++.+|+......++||+|+++.
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~~~~FDlIIsNP  122 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEFDTLFDMAISNP  122 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccccCCccEEEECC
Confidence            467999999999999998765     2459999999999999999886      34789999998754467899999998


Q ss_pred             cccccCh----------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc-----cCHHHHHHHHhcCCCcE
Q 024008          183 FFCAIEP----------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK-----VSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       183 ~~~~~~~----------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Gf~~  243 (274)
                      .+.....          .....++.+..+++++|+. ++-.......-.+.++.     .+-..+.++.++.|...
T Consensus       123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (241)
T PHA03412        123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLEM  197 (241)
T ss_pred             CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCeee
Confidence            8874321          2245688888886666665 44222111111121211     24567778888877654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.35  E-value=2e-11  Score=96.88  Aligned_cols=138  Identities=20%  Similarity=0.133  Sum_probs=103.6

Q ss_pred             eEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C--------CCCCeeEEE
Q 024008          111 RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C--------PTELFDLIF  179 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~~fD~v~  179 (274)
                      +|||||||||..+..+++  ++..+.-.|+++......+......+..+-..-+..|+... .        ..+.||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            599999999999999998  77899999999988766666665555433333455666552 1        245899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------------CCCCCcc-cCHHHHHHHHhcCCCcE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------------VGGPPYK-VSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~Gf~~  243 (274)
                      +.+++|.++......++....++|++||.++++..=..+.               ...+.+. -+.+++.+++.++|+..
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l  187 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL  187 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence            9999999888888999999999999999998865221111               1122233 36889999999999987


Q ss_pred             EEEee
Q 024008          244 ISIVD  248 (274)
Q Consensus       244 ~~~~~  248 (274)
                      ++..+
T Consensus       188 ~~~~~  192 (204)
T PF06080_consen  188 EEDID  192 (204)
T ss_pred             Ccccc
Confidence            66544

The function of this family is unknown.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.34  E-value=2.3e-11  Score=86.61  Aligned_cols=100  Identities=34%  Similarity=0.454  Sum_probs=82.6

Q ss_pred             eEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccccccc
Q 024008          111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFCAI  187 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~~~~  187 (274)
                      +|+|+|||.|..+..++. .+.+++++|+++.++..+++..... ...++.++..|+.+..  ..++||+|++..+++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999987 6679999999999999998543322 2356899999998844  45789999999998874


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                       ......+++.+.+.+++||.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence             356678899999999999998875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02476 O-methyltransferase

Probab=99.34  E-value=2.6e-11  Score=101.53  Aligned_cols=102  Identities=16%  Similarity=0.148  Sum_probs=86.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-------CCCe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~f  175 (274)
                      ..++.+|||+||++|+.+++++.   .+.+++++|.+++..+.|++++...|+.++++++.+|+.+..+       .++|
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            34568999999999999999987   3568999999999999999999999998899999999977221       3589


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                      |+|+.-     .++.....+++.+.+.|+|||.+++-
T Consensus       196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            999942     23456788999999999999998874

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.33  E-value=1.1e-11  Score=106.97  Aligned_cols=144  Identities=22%  Similarity=0.296  Sum_probs=101.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhc---------CCCCcceEEEEcccCC-----CCCC
Q 024008          108 PKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSS---------LPNAKFVSFLKADFFT-----WCPT  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~---------~~~~~~v~~~~~d~~~-----~~~~  172 (274)
                      ++.+|||+|||.|+.+.-....+ ..++|+|++...++.|+++...         ....-...|+.+|.+.     ..++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            56899999999999887776644 5999999999999999999821         1111246788888875     1233


Q ss_pred             --CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC--------------CC-------------C-
Q 024008          173 --ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS--------------DH-------------V-  220 (274)
Q Consensus       173 --~~fD~v~~~~~~~~~--~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~--------------~~-------------~-  220 (274)
                        .+||+|-|..++|+.  +.+....++..+.+.|+|||+++.+.....              ..             . 
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~  221 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDD  221 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCS
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccC
Confidence              599999999999996  445667899999999999999998664321              00             0 


Q ss_pred             C----C--------------CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          221 G----G--------------PPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       221 ~----~--------------~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      .    |              +.|.+..+.+.+++++.|++++.......
T Consensus       222 ~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e  270 (331)
T PF03291_consen  222 FFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE  270 (331)
T ss_dssp             S--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred             CCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence            0    1              11335789999999999999998766443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.33  E-value=2.2e-11  Score=109.97  Aligned_cols=140  Identities=19%  Similarity=0.163  Sum_probs=102.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.|++++..++. .+++|+.+|+.+..     ..++||+|++.
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            3457999999999999999998888999999999999999999987766 36999999997532     24579999987


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhH
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK  261 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~  261 (274)
                      .....+     ...++.+.+ ++|++++++.+.+.           |...=.+.|.+.||++.++...+. ++.-+..|+
T Consensus       375 PPr~g~-----~~~~~~l~~-~~~~~ivyvSCnp~-----------tlaRDl~~L~~~gY~l~~i~~~Dm-FP~T~HvE~  436 (443)
T PRK13168        375 PPRAGA-----AEVMQALAK-LGPKRIVYVSCNPA-----------TLARDAGVLVEAGYRLKRAGMLDM-FPHTGHVES  436 (443)
T ss_pred             cCCcCh-----HHHHHHHHh-cCCCeEEEEEeChH-----------HhhccHHHHhhCCcEEEEEEEecc-CCCCCcEEE
Confidence            665543     234555555 68999988888433           222223345567999999988653 222234565


Q ss_pred             HHHh
Q 024008          262 LGRW  265 (274)
Q Consensus       262 ~~~~  265 (274)
                      +.++
T Consensus       437 v~lL  440 (443)
T PRK13168        437 MALF  440 (443)
T ss_pred             EEEE
Confidence            5544

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.33  E-value=3.7e-11  Score=99.23  Aligned_cols=140  Identities=18%  Similarity=0.197  Sum_probs=112.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEE
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v~  179 (274)
                      .+-+||||.||+|........  +.  ..|...|+++..++..++.+.+.++.+.++|.++|+++.    ......++++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            346999999999999887766  32  489999999999999999999999988779999999982    1234579999


Q ss_pred             ecccccccCh-hHHHHHHHHHHhcccCCcEEEEEE--ccCCCC---------CCCCC---cccCHHHHHHHHhcCCCcEE
Q 024008          180 DYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLM--FPISDH---------VGGPP---YKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       180 ~~~~~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~--~~~~~~---------~~~~~---~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      .+++++.+++ +.....+..+.+++.|||+++...  |++-.+         ..+.+   ..-+..|+.++++.+||+.+
T Consensus       215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~  294 (311)
T PF12147_consen  215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI  294 (311)
T ss_pred             EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence            9999999976 446678999999999999999887  444321         12222   33589999999999999865


Q ss_pred             EEe
Q 024008          245 SIV  247 (274)
Q Consensus       245 ~~~  247 (274)
                      ...
T Consensus       295 ~q~  297 (311)
T PF12147_consen  295 DQR  297 (311)
T ss_pred             hhe
Confidence            443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK04457 spermidine synthase; Provisional

Probab=99.33  E-value=1e-11  Score=104.24  Aligned_cols=107  Identities=18%  Similarity=0.184  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~  183 (274)
                      ++.+|||||||+|..+..+++  ++.+++++|+++++++.|+++....+..++++++.+|..+.  ...++||+|++.. 
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-  144 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-  144 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence            457999999999999998876  57799999999999999999986554457899999998762  2236899999753 


Q ss_pred             ccc--cChh-HHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          184 FCA--IEPE-MRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       184 ~~~--~~~~-~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +..  .+.. ....+++.+.+.|+|||++++..++
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            221  1111 2368899999999999999986543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.32  E-value=1.7e-11  Score=98.73  Aligned_cols=112  Identities=19%  Similarity=0.226  Sum_probs=91.0

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE-cccCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTWC  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~  170 (274)
                      -..+..++.  ..++++|||||++.|+.+++++.  + ..+++.+|++++..+.|++++...++.+++..+. +|..+..
T Consensus        48 g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l  125 (219)
T COG4122          48 GALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL  125 (219)
T ss_pred             HHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence            333444444  34668999999999999999988  3 5699999999999999999999999998899988 5877622


Q ss_pred             ---CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          171 ---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 ---~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                         ..++||+||.    . .++.....+++.+.++|+|||.+++-+
T Consensus       126 ~~~~~~~fDliFI----D-adK~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         126 SRLLDGSFDLVFI----D-ADKADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             HhccCCCccEEEE----e-CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence               3589999993    2 345667889999999999999998854

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.30  E-value=6.2e-12  Score=101.29  Aligned_cols=102  Identities=20%  Similarity=0.217  Sum_probs=84.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD  176 (274)
                      ..+.+||||||++|+.++++++   .+.+++.+|++++..+.|++++...++.++++++.+|..+..       ..++||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            4568999999999999999997   467999999999999999999999998889999999997621       135899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +|+.-.     ++.....+++.+.++|+|||.+++-.
T Consensus       124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             EEEEcc-----cccchhhHHHHHhhhccCCeEEEEcc
Confidence            999432     34556778899999999999998854

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.30  E-value=5.7e-11  Score=102.65  Aligned_cols=140  Identities=20%  Similarity=0.137  Sum_probs=100.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|++++...++ ++++|+.+|+.+..  ..+.||+|++...-
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr  250 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPR  250 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence            3468999999999999999999889999999999999999999988876 57999999997632  23579999987664


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHH
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGR  264 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~  264 (274)
                      ..+.    ..+++. ...++|++++++.+.+..          -..++..+   .||++..+...+. ++.-+..|++..
T Consensus       251 ~G~~----~~~~~~-l~~~~~~~ivyvsc~p~t----------~~rd~~~l---~~y~~~~~~~~Dm-FP~T~HvE~v~~  311 (315)
T PRK03522        251 RGIG----KELCDY-LSQMAPRFILYSSCNAQT----------MAKDLAHL---PGYRIERVQLFDM-FPHTAHYEVLTL  311 (315)
T ss_pred             CCcc----HHHHHH-HHHcCCCeEEEEECCccc----------chhHHhhc---cCcEEEEEEEecc-CCCCCeEEEEEE
Confidence            4332    223333 334678888888774332          13344443   5999998887543 222235666555


Q ss_pred             hh
Q 024008          265 WK  266 (274)
Q Consensus       265 ~~  266 (274)
                      +.
T Consensus       312 l~  313 (315)
T PRK03522        312 LV  313 (315)
T ss_pred             EE
Confidence            43

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.30  E-value=6.8e-11  Score=106.83  Aligned_cols=132  Identities=20%  Similarity=0.214  Sum_probs=98.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..+++   .+.+|+++|+++.+++.+++++...++. +++++.+|+....+.++||.|++..
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~  326 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDA  326 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcC
Confidence            34567999999999998877765   3469999999999999999999888764 6999999998765667899999642


Q ss_pred             cc------c-------ccChhH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-CC
Q 024008          183 FF------C-------AIEPEM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-GF  241 (274)
Q Consensus       183 ~~------~-------~~~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gf  241 (274)
                      ..      .       .++++.       ...++..+.+.|+|||++++.+++....       -+...+..+++.+ +|
T Consensus       327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~-------Ene~~v~~~l~~~~~~  399 (445)
T PRK14904        327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE-------ENELQIEAFLQRHPEF  399 (445)
T ss_pred             CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------hHHHHHHHHHHhCCCC
Confidence            21      1       111111       2468999999999999999988665321       1355666777766 46


Q ss_pred             cEEE
Q 024008          242 QAIS  245 (274)
Q Consensus       242 ~~~~  245 (274)
                      ..+.
T Consensus       400 ~~~~  403 (445)
T PRK14904        400 SAEP  403 (445)
T ss_pred             EEec
Confidence            6543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.30  E-value=3.1e-11  Score=100.46  Aligned_cols=150  Identities=21%  Similarity=0.277  Sum_probs=111.2

Q ss_pred             HHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-----cceEEEEcccCC------
Q 024008          101 LHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-----KFVSFLKADFFT------  168 (274)
Q Consensus       101 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~------  168 (274)
                      ++.....++..++|+|||.|+.++..-+.|. .++|+|+....++.|++++..-...     -.+.|+.+|.+.      
T Consensus       110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~  189 (389)
T KOG1975|consen  110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL  189 (389)
T ss_pred             HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence            4444456678999999999999988877776 8999999999999999987653211     137889999886      


Q ss_pred             CC-CCCCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC----------------------------
Q 024008          169 WC-PTELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS----------------------------  217 (274)
Q Consensus       169 ~~-~~~~fD~v~~~~~~~~~--~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~----------------------------  217 (274)
                      .. ++.+||+|-|..++|+.  +.+..+.++..+.++|+|||+++-+.....                            
T Consensus       190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~  269 (389)
T KOG1975|consen  190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQ  269 (389)
T ss_pred             ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecc
Confidence            22 23349999999999984  345677889999999999999987543210                            


Q ss_pred             -----------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          218 -----------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       218 -----------------~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                                       +....|.|...-..+..++++.|.+++.+....
T Consensus       270 k~~~~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~  319 (389)
T KOG1975|consen  270 KEFDVPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFA  319 (389)
T ss_pred             cccCCCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHH
Confidence                             001112233456678889999999998887744

>PRK00811 spermidine synthase; Provisional

Probab=99.29  E-value=4.4e-11  Score=101.65  Aligned_cols=106  Identities=17%  Similarity=0.210  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHhhcCC----CCcceEEEEcccCCCC--CCCCeeEEE
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWC--PTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~--~~~~fD~v~  179 (274)
                      .+.+||++|||+|..+..+++. + .+|+++|+++.+++.|++.++..+    ..++++++.+|.....  ..++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            4579999999999999988873 4 489999999999999999876421    1468999999998732  357899999


Q ss_pred             ecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +...-...+..  ....+++.+.+.|+|||++++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            86432222211  13677899999999999988753

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=8.1e-11  Score=90.25  Aligned_cols=131  Identities=17%  Similarity=0.277  Sum_probs=104.6

Q ss_pred             CCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +..++|||||+|..+..|++   ++..+.++|++|.+++..++.+..++  .+++.++.|+......++.|+++.+..+.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~~l~~~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLSGLRNESVDVLVFNPPYV  121 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHhhhccCCccEEEECCCcC
Confidence            57899999999999999988   55689999999999999999887765  45888999999855559999999987654


Q ss_pred             ccChh-------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008          186 AIEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~-------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      --+++                   -.+.++.++-..|.|.|.+++.....+          .++++.++++..||.....
T Consensus       122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------~p~ei~k~l~~~g~~~~~~  191 (209)
T KOG3191|consen  122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------KPKEILKILEKKGYGVRIA  191 (209)
T ss_pred             cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------CHHHHHHHHhhcccceeEE
Confidence            32211                   135667777788899999998875443          5789999999999998877


Q ss_pred             eeccc
Q 024008          247 VDNKL  251 (274)
Q Consensus       247 ~~~~~  251 (274)
                      ..+..
T Consensus       192 ~~Rk~  196 (209)
T KOG3191|consen  192 MQRKA  196 (209)
T ss_pred             EEEec
Confidence            76543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=1.6e-10  Score=103.84  Aligned_cols=131  Identities=18%  Similarity=0.162  Sum_probs=97.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~v~~  180 (274)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++...+.  +++++.+|+....   ..++||.|++
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILL  319 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEE
Confidence            345689999999999999988873  36999999999999999999988775  3789999997632   3467999997


Q ss_pred             cccccc-------------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024008          181 YTFFCA-------------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-  239 (274)
Q Consensus       181 ~~~~~~-------------~~~~-------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  239 (274)
                      ......             ..+.       ....++..+.+.|+|||.+++..+.....       -+.+.+...++++ 
T Consensus       320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------Ene~~v~~~l~~~~  392 (427)
T PRK10901        320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------ENEQQIKAFLARHP  392 (427)
T ss_pred             CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------hCHHHHHHHHHhCC
Confidence            654321             1111       12478999999999999999877544321       2456777777766 


Q ss_pred             CCcEEE
Q 024008          240 GFQAIS  245 (274)
Q Consensus       240 Gf~~~~  245 (274)
                      +|.++.
T Consensus       393 ~~~~~~  398 (427)
T PRK10901        393 DAELLD  398 (427)
T ss_pred             CCEEec
Confidence            576544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.27  E-value=6e-11  Score=101.97  Aligned_cols=105  Identities=23%  Similarity=0.178  Sum_probs=80.3

Q ss_pred             HHHhcCC-CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCC
Q 024008          100 HLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTEL  174 (274)
Q Consensus       100 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~  174 (274)
                      .+++... .++.+|||+|||+|..+..+++.   ...|+++|+++++++.|++++...+. +++.++.+|.... ...++
T Consensus        71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCC
Confidence            3444433 35579999999999999988872   23799999999999999999887765 4699999998763 33467


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ||+|++......+        ...+.+.|+|||.+++..
T Consensus       150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence            9999986544432        245678999999988754

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.26  E-value=6.8e-11  Score=93.01  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....   ++++++.+|+.+.. +...||.|+++..++
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~   88 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYKVVGNLPYN   88 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCEEEECCCcc
Confidence            34579999999999999999998889999999999999999988542   47999999998843 344699999987766


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                       +..+....+++..  .+.++|.+++
T Consensus        89 -~~~~~i~~~l~~~--~~~~~~~l~~  111 (169)
T smart00650       89 -ISTPILFKLLEEP--PAFRDAVLMV  111 (169)
T ss_pred             -cHHHHHHHHHhcC--CCcceEEEEE
Confidence             3333333333321  1335666655

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.26  E-value=1.5e-11  Score=98.23  Aligned_cols=106  Identities=25%  Similarity=0.312  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCCcchhHHHhh----C-----C--CCeEEEEeCChHHHHHHHHHhhcC-------------------C---
Q 024008          108 PKGRALVPGCGTGYDVVAMA----S-----P--ERYVVGLEISDIAIKKAEELSSSL-------------------P---  154 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~----~-----~--~~~v~~iD~s~~~~~~a~~~~~~~-------------------~---  154 (274)
                      +..+|+..||++|.-...++    +     .  ..+|+|+|+|+.+++.|++-.-..                   +   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            34699999999997653332    2     2  248999999999999997732111                   0   


Q ss_pred             -----CCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          155 -----NAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       155 -----~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                           +..+|+|...|+.+ ..+.+.||+|+|.+|+.+++++....+++++++.|+|||++++..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                 12479999999998 666789999999999999999999999999999999999999865

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.25  E-value=9.4e-11  Score=103.51  Aligned_cols=138  Identities=20%  Similarity=0.162  Sum_probs=101.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++..++. ++++|+.+|+.+...  .++||+|+.....
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr  310 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVNPPR  310 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence            3457999999999999999999888999999999999999999988876 379999999976332  2469999988776


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC-HHHHHHHHhcCCCcEEEEeecccccCCccchhHHH
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS-VSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLG  263 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~  263 (274)
                      ..+.    ..+++.+. .++|++++++.+.+.           | ..++.. |  .||++..+...+. ++.-+..|.+.
T Consensus       311 ~G~~----~~~l~~l~-~~~p~~ivyvsc~p~-----------TlaRDl~~-L--~gy~l~~~~~~Dm-FPqT~HvE~v~  370 (374)
T TIGR02085       311 RGIG----KELCDYLS-QMAPKFILYSSCNAQ-----------TMAKDIAE-L--SGYQIERVQLFDM-FPHTSHYEVLT  370 (374)
T ss_pred             CCCc----HHHHHHHH-hcCCCeEEEEEeCHH-----------HHHHHHHH-h--cCceEEEEEEecc-CCCCCcEEEEE
Confidence            5444    33445554 378999999887322           2 334433 3  6999998887553 22223455554


Q ss_pred             Hh
Q 024008          264 RW  265 (274)
Q Consensus       264 ~~  265 (274)
                      ++
T Consensus       371 ll  372 (374)
T TIGR02085       371 LL  372 (374)
T ss_pred             EE
Confidence            43

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.25  E-value=4.4e-11  Score=95.27  Aligned_cols=140  Identities=18%  Similarity=0.174  Sum_probs=107.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCC---CCCCCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFT---WCPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~---~~~~~~fD~v~~~~  182 (274)
                      .+.+|||...|-|+.++..++.|+ +|+.+|.+|..++.|+-|--+.++ ..+++++.+|+.+   .+++++||+|+--.
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP  213 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP  213 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence            468999999999999999999999 999999999999999877655443 3468999999987   56778999999543


Q ss_pred             c-ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          183 F-FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       183 ~-~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      . |.....=....+.++++++|+|||.++-..-.+.....|-.   -+..+.+.++++||.+++.....
T Consensus       214 PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d---~~~gVa~RLr~vGF~~v~~~~~~  279 (287)
T COG2521         214 PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLD---LPKGVAERLRRVGFEVVKKVREA  279 (287)
T ss_pred             CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCC---hhHHHHHHHHhcCceeeeeehhc
Confidence            2 22211112367889999999999999987755543322222   36889999999999987766543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.24  E-value=1.8e-10  Score=92.48  Aligned_cols=105  Identities=12%  Similarity=0.082  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~  183 (274)
                      .++.+|||+|||+|..++.++. ...+|+++|.++.+++.+++++...+. .+++++.+|+.+..  ...+||+|++...
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPP  130 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPP  130 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence            3457999999999999986544 445999999999999999999988775 47999999997732  2346999999988


Q ss_pred             ccccChhHHHHHHHHHHh--cccCCcEEEEEEcc
Q 024008          184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLMFP  215 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~--~L~~gG~l~~~~~~  215 (274)
                      +..   .....+++.+..  +|+|++++++....
T Consensus       131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        131 FRK---GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            543   233445555555  37899988887644

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.24  E-value=1.3e-10  Score=92.96  Aligned_cols=117  Identities=17%  Similarity=0.294  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~~  174 (274)
                      .++.+|||+|||+|..+..+++   ...+++++|+++.+         ..   .+++++.+|+.+.         .+.++
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~---~~i~~~~~d~~~~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI---ENVDFIRGDFTDEEVLNKIRERVGDDK   98 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC---CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence            4568999999999999988876   23489999999854         11   3578888898753         24568


Q ss_pred             eeEEEeccccc---c--cCh----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          175 FDLIFDYTFFC---A--IEP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 fD~v~~~~~~~---~--~~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ||+|++....+   .  ++.    .....++..+.++|+|||++++..+...          ...++.+.++. +|..+.
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~----------~~~~~l~~l~~-~~~~~~  167 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE----------EIDEYLNELRK-LFEKVK  167 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc----------cHHHHHHHHHh-hhceEE
Confidence            99999865321   1  111    2346789999999999999998653321          34566666665 365444


Q ss_pred             E
Q 024008          246 I  246 (274)
Q Consensus       246 ~  246 (274)
                      +
T Consensus       168 ~  168 (188)
T TIGR00438       168 V  168 (188)
T ss_pred             E
Confidence            4

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=2.4e-10  Score=102.54  Aligned_cols=133  Identities=17%  Similarity=0.178  Sum_probs=98.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~  180 (274)
                      ..++.+|||+|||+|..+..++.   .+.+|+++|+++.+++.+++++...+.. +++++.+|.....  ..++||.|++
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEE
Confidence            34567999999999999888776   3569999999999999999999888764 5899999987632  3568999997


Q ss_pred             ccccccc-----Chh---------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024008          181 YTFFCAI-----EPE---------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-  239 (274)
Q Consensus       181 ~~~~~~~-----~~~---------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  239 (274)
                      .......     .++               ...+++..+.+.|+|||.++...++....       -+.+.+.+.++.+ 
T Consensus       314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e-------Ene~vv~~fl~~~~  386 (431)
T PRK14903        314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE-------ENTEVVKRFVYEQK  386 (431)
T ss_pred             CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-------hCHHHHHHHHHhCC
Confidence            5443211     111               12567899999999999999888665322       1455666666654 


Q ss_pred             CCcEEEE
Q 024008          240 GFQAISI  246 (274)
Q Consensus       240 Gf~~~~~  246 (274)
                      +|.++..
T Consensus       387 ~~~~~~~  393 (431)
T PRK14903        387 DAEVIDI  393 (431)
T ss_pred             CcEEecc
Confidence            5765544

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.23  E-value=3e-10  Score=102.76  Aligned_cols=133  Identities=19%  Similarity=0.152  Sum_probs=97.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++   ...+++++|+++.+++.+++++...+.. +++++.+|+....  ..+.||+|++.
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence            4567999999999999988887   3569999999999999999999888774 4999999997642  12689999986


Q ss_pred             cccccc-------------ChhH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-
Q 024008          182 TFFCAI-------------EPEM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-  240 (274)
Q Consensus       182 ~~~~~~-------------~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-  240 (274)
                      ......             .+..       ...++..+.++|+|||.++.........       -....+.++++.++ 
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------Ene~vv~~~l~~~~~  400 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE-------ENEEVIEAFLEEHPE  400 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh-------hhHHHHHHHHHhCCC
Confidence            542211             1111       2467899999999999998766443211       13456666777664 


Q ss_pred             CcEEEEe
Q 024008          241 FQAISIV  247 (274)
Q Consensus       241 f~~~~~~  247 (274)
                      |+.+.+.
T Consensus       401 ~~~~~~~  407 (444)
T PRK14902        401 FELVPLQ  407 (444)
T ss_pred             cEEeccc
Confidence            7776654

>PRK01581 speE spermidine synthase; Validated

Probab=99.23  E-value=2.8e-10  Score=98.06  Aligned_cols=139  Identities=15%  Similarity=0.122  Sum_probs=98.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHH--hh---cCC-CCcceEEEEcccCCC--CCCCCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEEL--SS---SLP-NAKFVSFLKADFFTW--CPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~--~~---~~~-~~~~v~~~~~d~~~~--~~~~~fD  176 (274)
                      ..+.+||++|||+|..+..+++.  ..+|+++|+++++++.|++.  +.   ... ..++++++.+|....  ...++||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            44579999999999999888873  35999999999999999972  11   111 247899999999873  3346899


Q ss_pred             EEEeccccc---ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCccc--CHHHHHHHHhcCCCcEEEEeeccc
Q 024008          177 LIFDYTFFC---AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV--SVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       177 ~v~~~~~~~---~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      +|++...-.   ....-....+++.+.+.|+|||++++..-++        +..  .-..+.+.++++|+.+........
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp--------~~~~~~~~~i~~tL~~af~~v~~y~t~vP  300 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP--------ADAPLVYWSIGNTIEHAGLTVKSYHTIVP  300 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh--------hhhHHHHHHHHHHHHHhCCceEEEEEecC
Confidence            999764211   0111123578899999999999987764211        111  113477889999998887777644


Q ss_pred             cc
Q 024008          252 AI  253 (274)
Q Consensus       252 ~~  253 (274)
                      .+
T Consensus       301 sy  302 (374)
T PRK01581        301 SF  302 (374)
T ss_pred             CC
Confidence            44

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.23  E-value=7.7e-11  Score=97.49  Aligned_cols=100  Identities=16%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--------CCCe
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~f  175 (274)
                      .++.+|||||+++|+.+++++.   ++.+++.+|.+++..+.|++++...|+.++++++.+|+.+..+        .++|
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f  157 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF  157 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence            4568999999999999999887   4679999999999999999999999998999999999877221        2689


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      |+|+.-     .++.....+++.+.+.|+|||.|++
T Consensus       158 D~iFiD-----adK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        158 DFIFVD-----ADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             cEEEec-----CCHHHhHHHHHHHHHhcCCCeEEEE
Confidence            999942     2345667888999999999999886

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.22  E-value=4.2e-10  Score=101.23  Aligned_cols=130  Identities=18%  Similarity=0.134  Sum_probs=95.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~v~~  180 (274)
                      ..++.+|||+|||+|..+..+++  ...+++++|+++.+++.+++++...+...++.+..+|.....   +.++||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            44568999999999999988877  346999999999999999999988876544555777776532   3568999996


Q ss_pred             cc------cccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008          181 YT------FFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       181 ~~------~~~~~~~-------~-------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  240 (274)
                      ..      ++...++       .       ....++..+.++|+|||.+++.+++....       -+...+..+++.++
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~-------Ene~~v~~~l~~~~  388 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE-------ENSEQIKAFLQEHP  388 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------hCHHHHHHHHHhCC
Confidence            42      3332221       1       12578899999999999999988665321       14666777777763


Q ss_pred             -Cc
Q 024008          241 -FQ  242 (274)
Q Consensus       241 -f~  242 (274)
                       |.
T Consensus       389 ~~~  391 (426)
T TIGR00563       389 DFP  391 (426)
T ss_pred             CCe
Confidence             54

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK03612 spermidine synthase; Provisional

Probab=99.21  E-value=1.3e-10  Score=106.76  Aligned_cols=133  Identities=20%  Similarity=0.194  Sum_probs=94.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHh--hcC---CC-CcceEEEEcccCCC--CCCCCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELS--SSL---PN-AKFVSFLKADFFTW--CPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~--~~~---~~-~~~v~~~~~d~~~~--~~~~~fD  176 (274)
                      .++++|||+|||+|..+..+++. + .+++++|+++++++.++++.  ...   .. .++++++.+|..+.  ..+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            34579999999999999988874 3 59999999999999999842  221   11 36899999999872  2346899


Q ss_pred             EEEecccccccCh---hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          177 LIFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       177 ~v~~~~~~~~~~~---~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      +|++.......+.   -...++++.+.+.|+|||.+++...++...      .....++.+.+++.||.+..
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~------~~~~~~i~~~l~~~gf~v~~  441 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA------PKAFWSIEATLEAAGLATTP  441 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc------hHHHHHHHHHHHHcCCEEEE
Confidence            9998754322111   112467899999999999988765222110      01235788899999994433

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.21  E-value=3.7e-10  Score=101.78  Aligned_cols=131  Identities=18%  Similarity=0.160  Sum_probs=97.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~  177 (274)
                      ..++.+|||+|||+|..+..+++   ...+|+++|+++.+++.+++++...+.. +++++.+|.....     ..++||.
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCE
Confidence            34568999999999999988876   2358999999999999999999888764 5999999987632     2468999


Q ss_pred             EEeccc------ccccCh-------hH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024008          178 IFDYTF------FCAIEP-------EM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       178 v~~~~~------~~~~~~-------~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      |++...      +..-++       ..       ...++..+.+.|+|||+++..++.....       -....+.++++
T Consensus       329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-------Ene~~v~~~l~  401 (434)
T PRK14901        329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-------ENEAQIEQFLA  401 (434)
T ss_pred             EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------hHHHHHHHHHH
Confidence            997532      222111       11       2578999999999999998877544211       13566777888


Q ss_pred             cC-CCcEE
Q 024008          238 PM-GFQAI  244 (274)
Q Consensus       238 ~~-Gf~~~  244 (274)
                      ++ +|++.
T Consensus       402 ~~~~~~~~  409 (434)
T PRK14901        402 RHPDWKLE  409 (434)
T ss_pred             hCCCcEec
Confidence            77 57644

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.20  E-value=2.5e-10  Score=102.98  Aligned_cols=126  Identities=19%  Similarity=0.183  Sum_probs=95.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~~  182 (274)
                      ++.+|||+|||+|..+..+++...+|+|+|+++.+++.|++++..++. .+++|+.+|+.+..     ..+.||+|+...
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP  370 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDP  370 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence            447999999999999999998778999999999999999999988776 47999999986521     235799999765


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      .-..+.    ..+++.+.+ ++|++++++.+.+.           +...-.+.+...||++..+...+
T Consensus       371 Pr~G~~----~~~l~~l~~-l~~~~ivyvsc~p~-----------tlard~~~l~~~gy~~~~~~~~D  422 (431)
T TIGR00479       371 PRKGCA----AEVLRTIIE-LKPERIVYVSCNPA-----------TLARDLEFLCKEGYGITWVQPVD  422 (431)
T ss_pred             CCCCCC----HHHHHHHHh-cCCCEEEEEcCCHH-----------HHHHHHHHHHHCCeeEEEEEEec
Confidence            533332    344555554 78988887765211           44455566777899988887754

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.20  E-value=6.1e-11  Score=100.33  Aligned_cols=104  Identities=19%  Similarity=0.170  Sum_probs=88.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~  183 (274)
                      ..+++.|||+|||+|.+++..++.|+ +|+++|.|. ..+.|++.+..+++.+.++++.+.+.+ ..|.+++|+|++-+.
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM  136 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM  136 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence            35678999999999999999999888 899999865 559999999999998899999999988 445689999999765


Q ss_pred             cccc-ChhHHHHHHHHHHhcccCCcEEE
Q 024008          184 FCAI-EPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       184 ~~~~-~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      -..+ .+.++..++-.=-++|+|||.++
T Consensus       137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  137 GYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            4443 34677888888899999999976

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.17  E-value=3.9e-10  Score=96.56  Aligned_cols=140  Identities=17%  Similarity=0.130  Sum_probs=92.3

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEE-ccc---CCC--CCCCCeeEEE
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLK-ADF---FTW--CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~-~d~---~~~--~~~~~fD~v~  179 (274)
                      ..++||||||+|.....++.  .+++++|+|+++.+++.|++++..+ ++.+++++.. .|.   +..  .+.+.||+|+
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv  194 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL  194 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence            46999999999988777765  5789999999999999999999988 6878888864 332   221  2456899999


Q ss_pred             ecccccccChhHH---HHHHHH----------------HHhcccCCcEEEEEEccCCCC----CCCCCcc------cCHH
Q 024008          180 DYTFFCAIEPEMR---AAWAQK----------------IKDFLKPDGELITLMFPISDH----VGGPPYK------VSVS  230 (274)
Q Consensus       180 ~~~~~~~~~~~~~---~~~l~~----------------l~~~L~~gG~l~~~~~~~~~~----~~~~~~~------~~~~  230 (274)
                      |+..|+.-..+..   ..-...                ..+++.+||.+-++..-..+.    .....|.      -+..
T Consensus       195 cNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~  274 (321)
T PRK11727        195 CNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLP  274 (321)
T ss_pred             eCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHH
Confidence            9999875432211   111111                234455777754433111100    0000111      2788


Q ss_pred             HHHHHHhcCCCcEEEEee
Q 024008          231 DYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       231 ~~~~~~~~~Gf~~~~~~~  248 (274)
                      .+.+.+++.|...+.+.+
T Consensus       275 ~l~~~L~~~~~~~~~~~e  292 (321)
T PRK11727        275 PLYRALKKVGAVEVKTIE  292 (321)
T ss_pred             HHHHHHHHcCCceEEEEE
Confidence            999999999987666665

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.17  E-value=4.1e-10  Score=95.54  Aligned_cols=136  Identities=16%  Similarity=0.164  Sum_probs=109.4

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccCh
Q 024008          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP  189 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~  189 (274)
                      ...+|+|.|.|..+..+...-.++-+++++...+..++..+. .|    |+.+.+|.++..|.+  |+||..++++|+++
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P~~--daI~mkWiLhdwtD  251 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTPKG--DAIWMKWILHDWTD  251 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCCCc--CeEEEEeecccCCh
Confidence            689999999999999888843468888888888877777764 43    888999999865554  79999999999999


Q ss_pred             hHHHHHHHHHHhcccCCcEEEEEEccCCCC-CCC-------------------CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          190 EMRAAWAQKIKDFLKPDGELITLMFPISDH-VGG-------------------PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       190 ~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++..++++++++.|+|||.+++.+.-.... ..+                   .....+..+++.++.++||.+..+...
T Consensus       252 edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~  331 (342)
T KOG3178|consen  252 EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALT  331 (342)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEec
Confidence            999999999999999999999988744321 111                   012248899999999999999888775


Q ss_pred             ccc
Q 024008          250 KLA  252 (274)
Q Consensus       250 ~~~  252 (274)
                      ...
T Consensus       332 ~~~  334 (342)
T KOG3178|consen  332 AYS  334 (342)
T ss_pred             cCc
Confidence            543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.16  E-value=1.4e-10  Score=97.95  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=83.9

Q ss_pred             CCeEEEEcCCcchhHHHhh----CC------CCeEEEEeCChHHHHHHHHHhhc-----------------------CC-
Q 024008          109 KGRALVPGCGTGYDVVAMA----SP------ERYVVGLEISDIAIKKAEELSSS-----------------------LP-  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~------~~~v~~iD~s~~~~~~a~~~~~~-----------------------~~-  154 (274)
                      ..+|+..||+||.-...++    +.      ..+|+|+|+|+.+++.|++-.-.                       .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999997643332    21      35899999999999999875311                       01 


Q ss_pred             ------CCcceEEEEcccCCC--CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          155 ------NAKFVSFLKADFFTW--CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       155 ------~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                            +...|+|...|+.+.  .+.++||+|+|.+++.|++++....+++++.+.|+|||++++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                  235689999999873  23578999999999999999899999999999999999987754

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.15  E-value=8.1e-10  Score=93.06  Aligned_cols=110  Identities=19%  Similarity=0.123  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~  181 (274)
                      ..++.+|||+|||+|..+..++.   ....|+++|+++.+++.+++++...+. .++.++..|.... ...+.||.|++.
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D  147 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLD  147 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEc
Confidence            34668999999999999988876   235899999999999999999988876 3589999998653 234569999975


Q ss_pred             ccccc-------------cChh-------HHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          182 TFFCA-------------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       182 ~~~~~-------------~~~~-------~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      .....             +.++       ....++..+.+.|+|||+++....+.
T Consensus       148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            43221             1111       12468899999999999998877554

>PLN02366 spermidine synthase

Probab=99.15  E-value=6.5e-10  Score=95.08  Aligned_cols=107  Identities=18%  Similarity=0.189  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCC--C-CcceEEEEcccCCC---CCCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTW---CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~---~~~~~fD~v  178 (274)
                      ..+.+||+||||.|..+..+++ ++ .+|+.+|+++.+++.+++..+..+  + +++++++.+|....   .+.++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            3468999999999999999988 33 589999999999999999876431  2 46899999998662   235689999


Q ss_pred             EecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ++...-...+..  ....+++.+.++|+|||++++..
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            975432221111  13578899999999999987643

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.15  E-value=4.4e-10  Score=90.15  Aligned_cols=125  Identities=24%  Similarity=0.241  Sum_probs=90.4

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEeccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~~~  183 (274)
                      ..+||||||.|..+..+|.  +...++|+|+....+..+..++...++ .|+.++.+|+..    ..+++++|.|+.+.+
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            3899999999999999987  788999999999999999998887766 579999999987    456789999997644


Q ss_pred             ccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC--CCcEEE
Q 024008          184 FCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM--GFQAIS  245 (274)
Q Consensus       184 ~~~~~~~~------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Gf~~~~  245 (274)
                      =-+.-...      ...++..+.++|+|||.+.+..-..          .--+++.+.++..  +|..+.
T Consensus        98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~----------~y~~~~~~~~~~~~~~f~~~~  157 (195)
T PF02390_consen   98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE----------EYAEWMLEQFEESHPGFENIE  157 (195)
T ss_dssp             ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H----------HHHHHHHHHHHHHSTTEEEE-
T ss_pred             CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHhcCcCeEEcc
Confidence            22211111      2578999999999999998876111          1235566666663  677664

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.14  E-value=1e-09  Score=93.49  Aligned_cols=142  Identities=18%  Similarity=0.167  Sum_probs=110.0

Q ss_pred             CccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC-
Q 024008           93 QPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT-  168 (274)
Q Consensus        93 ~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-  168 (274)
                      ...|.+.+.+.++  ..++..|||.-||||..++.....|++++|+|++..++.-|+.|+...+..+ ..+... |+.. 
T Consensus       180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~l  258 (347)
T COG1041         180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNL  258 (347)
T ss_pred             CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccC
Confidence            3467777766554  3455799999999999999999999999999999999999999998887543 444444 8888 


Q ss_pred             CCCCCCeeEEEecccccccC-------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024008          169 WCPTELFDLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       169 ~~~~~~fD~v~~~~~~~~~~-------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf  241 (274)
                      +++.+.+|.|++-..+.-..       ++....+++.+.++|++||++++...               ......+++.||
T Consensus       259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p---------------~~~~~~~~~~~f  323 (347)
T COG1041         259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP---------------RDPRHELEELGF  323 (347)
T ss_pred             CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC---------------CcchhhHhhcCc
Confidence            44555699999987765532       24568899999999999999988762               222345677799


Q ss_pred             cEEEEeecc
Q 024008          242 QAISIVDNK  250 (274)
Q Consensus       242 ~~~~~~~~~  250 (274)
                      +++......
T Consensus       324 ~v~~~~~~~  332 (347)
T COG1041         324 KVLGRFTMR  332 (347)
T ss_pred             eEEEEEEEe
Confidence            998877644

>TIGR00417 speE spermidine synthase

Probab=99.14  E-value=5.5e-10  Score=94.44  Aligned_cols=106  Identities=19%  Similarity=0.184  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~fD~v~~  180 (274)
                      .+.+||++|||+|..+..+++.  ..+++++|+++++++.+++..+..+   ..++++++.+|..+.  ...++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            3469999999999999888773  3589999999999999999875432   135788999888662  22468999998


Q ss_pred             cccccccChhH--HHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~--~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ......-+...  ...+++.+.+.|+|||++++..
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            65422211111  3678899999999999998863

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.14  E-value=1.9e-10  Score=92.24  Aligned_cols=103  Identities=16%  Similarity=0.147  Sum_probs=77.3

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC
Q 024008          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~  188 (274)
                      +.++|+|||+|..++.++..--+|+|+|+|+.+++.|++..+..-......+...+... ...++++|+|++..++|+++
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd  114 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD  114 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence            48999999999888888877669999999999999998876443211123334444444 23468999999999999984


Q ss_pred             hhHHHHHHHHHHhcccCCc-EEEEEEcc
Q 024008          189 PEMRAAWAQKIKDFLKPDG-ELITLMFP  215 (274)
Q Consensus       189 ~~~~~~~l~~l~~~L~~gG-~l~~~~~~  215 (274)
                         +..+.+.+.++|++.| .+.+-.+.
T Consensus       115 ---le~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  115 ---LERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             ---hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence               4678899999998877 66555554

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.13  E-value=9e-10  Score=90.01  Aligned_cols=150  Identities=19%  Similarity=0.175  Sum_probs=101.2

Q ss_pred             cHHHHHHHhcCC------CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008           95 APIIVHLHQSGA------LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus        95 ~~~~~~~~~~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .....+++....      ....++||||+|.|..+..++..-.+|++.|.|+.|....+++-        .+.+..|-. 
T Consensus        75 ~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w-  145 (265)
T PF05219_consen   75 EEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG--------FTVLDIDDW-  145 (265)
T ss_pred             HHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC--------CeEEehhhh-
Confidence            445555555321      13468999999999999999886668999999999977766542        233322221 


Q ss_pred             CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE---ccCCCCC--------------CCCCcccCHHH
Q 024008          169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM---FPISDHV--------------GGPPYKVSVSD  231 (274)
Q Consensus       169 ~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~---~~~~~~~--------------~~~~~~~~~~~  231 (274)
                      ...+.+||+|.|.+++...+  ....+++.+++.|+|+|++++..   +.+..+.              .+..+.-....
T Consensus       146 ~~~~~~fDvIscLNvLDRc~--~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~  223 (265)
T PF05219_consen  146 QQTDFKFDVISCLNVLDRCD--RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSS  223 (265)
T ss_pred             hccCCceEEEeehhhhhccC--CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHH
Confidence            12245899999999998874  34678999999999999988733   1111111              11112223444


Q ss_pred             HHHHHhcCCCcEEEEeecccccCC
Q 024008          232 YEEVLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~~~~~~~~  255 (274)
                      +.+.|+.+||+++.....+.-..+
T Consensus       224 l~~v~~p~GF~v~~~tr~PYLcEG  247 (265)
T PF05219_consen  224 LVNVFEPAGFEVERWTRLPYLCEG  247 (265)
T ss_pred             HHHHHHhcCCEEEEEeccCccccC
Confidence            558899999999998886665444

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.13  E-value=7.2e-10  Score=88.90  Aligned_cols=154  Identities=20%  Similarity=0.265  Sum_probs=102.3

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC-----C------------
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP-----N------------  155 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~-----~------------  155 (274)
                      .+.+..+ +.....+..+|||||..|.++..+++  ....+.|+|+++..+..|+++.+...     +            
T Consensus        46 D~rLk~L-~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~  124 (288)
T KOG2899|consen   46 DPRLKVL-EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF  124 (288)
T ss_pred             Chhhhhc-cccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence            4444444 33345668999999999999999998  33479999999999999999865431     0            


Q ss_pred             -----------------Ccce-------EEEEcccCCCCCCCCeeEEEeccc--cccc--ChhHHHHHHHHHHhcccCCc
Q 024008          156 -----------------AKFV-------SFLKADFFTWCPTELFDLIFDYTF--FCAI--EPEMRAAWAQKIKDFLKPDG  207 (274)
Q Consensus       156 -----------------~~~v-------~~~~~d~~~~~~~~~fD~v~~~~~--~~~~--~~~~~~~~l~~l~~~L~~gG  207 (274)
                                       .+++       .+...|+. ......||+|+|..+  +.|+  .++-+..++.++.++|.|||
T Consensus       125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG  203 (288)
T KOG2899|consen  125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG  203 (288)
T ss_pred             ccccccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence                             0112       22222232 233468999999755  3333  34667899999999999999


Q ss_pred             EEEEEEccCCC-----------CCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          208 ELITLMFPISD-----------HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       208 ~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ++++.-.+=..           ...-....+.++.+..++.+.+--...+++..
T Consensus       204 iLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~  257 (288)
T KOG2899|consen  204 ILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG  257 (288)
T ss_pred             EEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence            99985422100           00111234688999999998865555555544

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.12  E-value=4.5e-10  Score=88.53  Aligned_cols=105  Identities=21%  Similarity=0.214  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCC-----CCCCCee
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW-----CPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~-----~~~~~fD  176 (274)
                      ..++.+|||+|||+|..++.++..  ..+|+..|.++ .++..+.++..++  ...++.+...|..+.     ...++||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            345689999999999999999886  66999999988 9999999998876  456788998887651     2346899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +|++..+++.  ++....++..+.++++++|.+++..
T Consensus       122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            9999999885  3667889999999999999866554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.12  E-value=9.2e-10  Score=92.21  Aligned_cols=105  Identities=18%  Similarity=0.207  Sum_probs=86.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ..+++.|||+|||+|.++...+..|+ +|+++|. +++.+.|+..+..+.+.+++.++.+.+.+...+++.|+|++-..-
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG  253 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG  253 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence            56678999999999999999999887 8999997 568999999999998999999999999997778899999976443


Q ss_pred             ccc-ChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          185 CAI-EPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       185 ~~~-~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                      ..+ .+.+++.++ ..++.|+|.|.++-.
T Consensus       254 ~mL~NERMLEsYl-~Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  254 YMLVNERMLESYL-HARKWLKPNGKMFPT  281 (517)
T ss_pred             hhhhhHHHHHHHH-HHHhhcCCCCcccCc
Confidence            322 334455554 455999999997643

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.12  E-value=3.2e-10  Score=101.67  Aligned_cols=102  Identities=20%  Similarity=0.153  Sum_probs=79.1

Q ss_pred             CCeEEEEcCCcchhHHHhhCCC------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008          109 KGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~------~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  182 (274)
                      +..|||+|||+|.++...++.+      .+|++||-++.++...++++..+++.++|+++.+|+.+...+.++|+|++=.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            4689999999999987766643      4999999999999888888777788889999999999977778999999854


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      .=...+.+.....+....+.|+|||+++
T Consensus       267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  267 LGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            4333344556678889999999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.10  E-value=2.8e-09  Score=84.47  Aligned_cols=127  Identities=20%  Similarity=0.293  Sum_probs=92.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCe---------EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCC
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERY---------VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~---------v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~  174 (274)
                      .++..|||.-||+|.+++..+.  ....         ++|+|+++.++..|++|+...++...+.+...|+.... .++.
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~  106 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS  106 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence            3457999999999999987765  3333         89999999999999999999988888999999999855 6789


Q ss_pred             eeEEEeccccccc-Ch-----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          175 FDLIFDYTFFCAI-EP-----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       175 fD~v~~~~~~~~~-~~-----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +|.|+++..+..- ..     .....+++.+.+++++ ..+++..              ....+.+.+...+++......
T Consensus       107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~--------------~~~~~~~~~~~~~~~~~~~~~  171 (179)
T PF01170_consen  107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT--------------SNRELEKALGLKGWRKRKLYN  171 (179)
T ss_dssp             SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE--------------SCCCHHHHHTSTTSEEEEEEE
T ss_pred             CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE--------------CCHHHHHHhcchhhceEEEEE
Confidence            9999999988753 21     2345678888999998 4344433              345677888888887766554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.09  E-value=2e-09  Score=86.00  Aligned_cols=104  Identities=12%  Similarity=-0.048  Sum_probs=79.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CC-CCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PT-ELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~-~~fD~v~~  180 (274)
                      .++.+|||++||+|.+++.++..|+ +|+++|.++.+++.+++++...+..++++++.+|+....    .. ..||+|+.
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            3568999999999999999999887 899999999999999999988877667999999996621    12 24788888


Q ss_pred             cccccccChhHHHHHHHHHH--hcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~--~~L~~gG~l~~~~  213 (274)
                      ...+..-   ....++..+.  .+|+++|.+++..
T Consensus       128 DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       128 DPPFFNG---ALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             CcCCCCC---cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            7776532   2233444443  4688888777654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.09  E-value=7.4e-10  Score=87.57  Aligned_cols=141  Identities=15%  Similarity=0.177  Sum_probs=90.0

Q ss_pred             hhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc
Q 024008           78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK  157 (274)
Q Consensus        78 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~  157 (274)
                      |.+.|.+....|- ..|...+.+.+... .+...|.|+|||.+.++..+ ..+.+|..+|+-+.                
T Consensus        44 YH~Gfr~Qv~~WP-~nPvd~iI~~l~~~-~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~----------------  104 (219)
T PF05148_consen   44 YHEGFRQQVKKWP-VNPVDVIIEWLKKR-PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP----------------  104 (219)
T ss_dssp             HHHHHHHHHCTSS-S-HHHHHHHHHCTS--TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------
T ss_pred             HHHHHHHHHhcCC-CCcHHHHHHHHHhc-CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC----------------
Confidence            3455555555665 33445555555532 22369999999999999665 35578999998542                


Q ss_pred             ceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024008          158 FVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       158 ~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      +-.+..+|+.+ +.+++.+|++++...+..   .+...++.+..|+||+||.+.|.+-...        +-+.+.+.+.+
T Consensus       105 n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------f~~~~~F~~~~  173 (219)
T PF05148_consen  105 NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------FENVKQFIKAL  173 (219)
T ss_dssp             STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------S-HHHHHHHH
T ss_pred             CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc--------CcCHHHHHHHH
Confidence            23477899987 778899999998877765   3667899999999999999999884332        22688999999


Q ss_pred             hcCCCcEEEEee
Q 024008          237 QPMGFQAISIVD  248 (274)
Q Consensus       237 ~~~Gf~~~~~~~  248 (274)
                      +..||++...+.
T Consensus       174 ~~~GF~~~~~d~  185 (219)
T PF05148_consen  174 KKLGFKLKSKDE  185 (219)
T ss_dssp             HCTTEEEEEEE-
T ss_pred             HHCCCeEEeccc
Confidence            999999988654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.07  E-value=2.2e-09  Score=94.00  Aligned_cols=135  Identities=21%  Similarity=0.130  Sum_probs=101.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~fD~v~~  180 (274)
                      .+++|||+-|=||..+...+..|+ +|++||.|..+++.|++|+..+++. .++.|+++|+++..     ...+||+|+.
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil  296 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL  296 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence            378999999999999999999999 9999999999999999999999874 56899999999832     2358999997


Q ss_pred             ccc-ccccC------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          181 YTF-FCAIE------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       181 ~~~-~~~~~------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      -.+ |..-.      ..+...++..+.++|+|||.++++.....-.     ...-.+.+.+.+...|.....+.
T Consensus       297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-----~~~f~~~i~~a~~~~~~~~~~~~  365 (393)
T COG1092         297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-----SDLFLEIIARAAAAAGRRAQEIE  365 (393)
T ss_pred             CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-----HHHHHHHHHHHHHhcCCcEEEee
Confidence            543 22111      1234678899999999999999887543211     01123445555666666655554

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.06  E-value=1.9e-09  Score=89.89  Aligned_cols=105  Identities=21%  Similarity=0.225  Sum_probs=84.8

Q ss_pred             CCeEEEEcCCcchhHHH----hhC--C-----CCeEEEEeCChHHHHHHHHHhhc-----CC------------------
Q 024008          109 KGRALVPGCGTGYDVVA----MAS--P-----ERYVVGLEISDIAIKKAEELSSS-----LP------------------  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~----l~~--~-----~~~v~~iD~s~~~~~~a~~~~~~-----~~------------------  154 (274)
                      .-+|.-+||+||.-...    +.+  .     ..+|+|+|+|..+++.|+.-.-.     .+                  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            56999999999965432    222  1     35899999999999999764333     11                  


Q ss_pred             -----CCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          155 -----NAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       155 -----~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                           +...|.|...|+.... ..+.||+|+|.+|+.+++.+....++.+++..|+|||.+++..
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                 1236889999998744 6678999999999999999888999999999999999999865

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.06  E-value=1.9e-09  Score=88.03  Aligned_cols=106  Identities=17%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC------CCCCCCeeEEE
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~fD~v~  179 (274)
                      .+..|||+|||+|..+..++.  +...++++|.|+.++..|.+|+....+.+++..+.-+...      ....+++|+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            345899999999999999887  6679999999999999999999999888888888554443      23458999999


Q ss_pred             ecccccccCh------------------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEP------------------------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~------------------------~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ++..+..-++                        +....+..-..+.|+|||.+.+..
T Consensus       228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~  285 (328)
T KOG2904|consen  228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL  285 (328)
T ss_pred             cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence            9977643211                        112456677788999999888765

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.04  E-value=7.9e-09  Score=78.39  Aligned_cols=105  Identities=19%  Similarity=0.152  Sum_probs=89.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD~  177 (274)
                      .++.-|||+|.|||..+..+.+.|   ..++++|++++.+....+..+      .++++.+|.+..      .....||.
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~  120 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDS  120 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeee
Confidence            345699999999999999998854   489999999999999998884      467899999873      23457999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      |++.-.+-.++....-++++.+...|.+||.++...+++-
T Consensus       121 viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~  160 (194)
T COG3963         121 VISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL  160 (194)
T ss_pred             EEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence            9999888888888888999999999999999999988753

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.03  E-value=2e-09  Score=90.64  Aligned_cols=139  Identities=22%  Similarity=0.144  Sum_probs=94.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC----CCCCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC----PTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----~~~~fD~v~~  180 (274)
                      ..+.+|||+-|-||.++...+..|+ +|+.||.|..+++.+++|+..+++. .+++|+..|+++..    ..++||+|++
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            3468999999999999999888887 7999999999999999999998875 67999999998722    2468999997


Q ss_pred             ccc-cccc--C-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC--CcEEEEeecccccC
Q 024008          181 YTF-FCAI--E-PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG--FQAISIVDNKLAIG  254 (274)
Q Consensus       181 ~~~-~~~~--~-~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--f~~~~~~~~~~~~~  254 (274)
                      -.+ |..-  . ......++..+.++|+|||.++++..+.         .++.+.+.+.+.+++  ++.++.-..+..++
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~---------~i~~~~l~~~~~~~a~~~~~~~~~~~p~df~  272 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH---------HISPDFLLEAVAEAAREVEFIERLGQPPDFP  272 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T---------TS-HHHHHHHHHHHHHHCEEEEEEE------
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc---------ccCHHHHHHHHHHhCccceEeeeeccccccc
Confidence            643 2211  0 1345678899999999999988776433         346677777776665  44444433443333

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.02  E-value=4.4e-09  Score=92.50  Aligned_cols=136  Identities=17%  Similarity=0.079  Sum_probs=95.7

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024008          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------------  171 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------------  171 (274)
                      +.+|||++||+|.++..+++...+|+++|.++.+++.|++++..++. .+++|+.+|+.+...                 
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            35799999999999999988767999999999999999999988876 379999999976211                 


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC-HHHHHHHHhcCCCcEEEEeecc
Q 024008          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS-VSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ..+||+|+....-..+.    ..+++.+.+   +++++++.+.+.           + ..++.. |.+ ||++..+...+
T Consensus       286 ~~~~D~v~lDPPR~G~~----~~~l~~l~~---~~~ivyvSC~p~-----------tlarDl~~-L~~-gY~l~~v~~~D  345 (362)
T PRK05031        286 SYNFSTIFVDPPRAGLD----DETLKLVQA---YERILYISCNPE-----------TLCENLET-LSQ-THKVERFALFD  345 (362)
T ss_pred             CCCCCEEEECCCCCCCc----HHHHHHHHc---cCCEEEEEeCHH-----------HHHHHHHH-HcC-CcEEEEEEEcc
Confidence            12589999766643332    344455544   678888877322           3 334444 444 99999888755


Q ss_pred             cccCCccchhHHHHhh
Q 024008          251 LAIGPRKGREKLGRWK  266 (274)
Q Consensus       251 ~~~~~~~~~~~~~~~~  266 (274)
                      . ++.-...|.+..+.
T Consensus       346 m-FPqT~HvE~v~lL~  360 (362)
T PRK05031        346 Q-FPYTHHMECGVLLE  360 (362)
T ss_pred             c-CCCCCcEEEEEEEE
Confidence            3 22223566655543

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=99.01  E-value=2.3e-08  Score=83.31  Aligned_cols=136  Identities=24%  Similarity=0.281  Sum_probs=99.8

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc---CC-------------------------------
Q 024008          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS---LP-------------------------------  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~---~~-------------------------------  154 (274)
                      +.+||-.|||.|+++..++..|..+.|.|.|--|+-...-.+..   .+                               
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p  136 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP  136 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence            36999999999999999999999999999998886554432211   10                               


Q ss_pred             -----CCcceEEEEcccCCCC-C---CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC---
Q 024008          155 -----NAKFVSFLKADFFTWC-P---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG---  222 (274)
Q Consensus       155 -----~~~~v~~~~~d~~~~~-~---~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~---  222 (274)
                           ...++....||+.+.. +   .++||+|++...+.-.  .+.-.+++.+.++|||||.++  .+++..-...   
T Consensus       137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WI--N~GPLlyh~~~~~  212 (270)
T PF07942_consen  137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWI--NFGPLLYHFEPMS  212 (270)
T ss_pred             ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEE--ecCCccccCCCCC
Confidence                 1235677788888732 2   2689999988655533  567789999999999999554  3333222111   


Q ss_pred             ----CCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          223 ----PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       223 ----~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                          ....++.+|+.++++..||+++.-+.
T Consensus       213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  213 IPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                22568999999999999999987666

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.96  E-value=1.9e-09  Score=85.49  Aligned_cols=108  Identities=23%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~  180 (274)
                      .++.++||+-||+|..++..+.+|+ +|+.||.++.++...++|+...+..+++.++..|.....     ...+||+|++
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            5678999999999999999998887 899999999999999999998877777999999976621     4678999998


Q ss_pred             cccccccChhHHHHHHHHHH--hcccCCcEEEEEEccC
Q 024008          181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI  216 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~--~~L~~gG~l~~~~~~~  216 (274)
                      -.++..-.  ....+++.+.  .+|+++|.+++.....
T Consensus       121 DPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  121 DPPYAKGL--YYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             --STTSCH--HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCCcccch--HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            87776531  1356777776  7899999888876433

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.96  E-value=5.5e-10  Score=88.86  Aligned_cols=141  Identities=20%  Similarity=0.170  Sum_probs=107.2

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccc
Q 024008          109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~  186 (274)
                      -..++|||||.|.....+...+. +++.+|.|-.+++.++..-. .+  -.+...++|-.. .+.++++|+|+++..+|+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--eEEEEEecchhcccccccchhhhhhhhhhhh
Confidence            46899999999999999988766 89999999999999876532 21  235666777665 456789999999999998


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCc----ccCHHHHHHHHhcCCCcEEEEee
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPY----KVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------------~~~~~~----~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ..  +++..+.+++..|||+|.++...++..-.              .+|..-    +....++..++..+||....++.
T Consensus       150 ~N--dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDt  227 (325)
T KOG2940|consen  150 TN--DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDT  227 (325)
T ss_pred             hc--cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecc
Confidence            73  55678899999999999999877665311              122111    12578899999999999988877


Q ss_pred             cccccC
Q 024008          249 NKLAIG  254 (274)
Q Consensus       249 ~~~~~~  254 (274)
                      .+..+.
T Consensus       228 DEi~v~  233 (325)
T KOG2940|consen  228 DEIVVG  233 (325)
T ss_pred             cceeec
Confidence            655443

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.95  E-value=7.8e-09  Score=85.59  Aligned_cols=146  Identities=20%  Similarity=0.152  Sum_probs=95.4

Q ss_pred             HhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCC--------------------------
Q 024008          102 HQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP--------------------------  154 (274)
Q Consensus       102 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~--------------------------  154 (274)
                      +.....++.++||||||.-.....-+.+.+ +|+..|+.+..++..++-+...+                          
T Consensus        50 f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~  129 (256)
T PF01234_consen   50 FSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE  129 (256)
T ss_dssp             HHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred             hCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence            333345567999999999555433333333 89999999999887766554432                          


Q ss_pred             -CCcce-EEEEcccCCCCC--C-----CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCCC--CCC
Q 024008          155 -NAKFV-SFLKADFFTWCP--T-----ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPISD--HVG  221 (274)
Q Consensus       155 -~~~~v-~~~~~d~~~~~~--~-----~~fD~v~~~~~~~~~--~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~--~~~  221 (274)
                       +...| .++.+|+.+..|  +     .+||+|++..+++..  +.+.....++++.++|||||.+++...-...  ..+
T Consensus       130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG  209 (256)
T PF01234_consen  130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG  209 (256)
T ss_dssp             HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred             HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence             00123 477889987322  1     359999999998876  3467889999999999999998886532211  111


Q ss_pred             CC---CcccCHHHHHHHHhcCCCcEEEEe
Q 024008          222 GP---PYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       222 ~~---~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +.   ...++.+.+.+.++++||.++..+
T Consensus       210 ~~~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  210 GHKFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             TEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             CEecccccCCHHHHHHHHHHcCCEEEecc
Confidence            11   223689999999999999998888

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.95  E-value=6.9e-09  Score=84.09  Aligned_cols=139  Identities=15%  Similarity=0.150  Sum_probs=99.6

Q ss_pred             hHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc
Q 024008           79 EKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF  158 (274)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~  158 (274)
                      .+.|......|-. .+...+.+.+... .....|.|+|||-+.++.   .....|+.+|+-+                .+
T Consensus       153 H~gfr~QV~kWP~-nPld~ii~~ik~r-~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~  211 (325)
T KOG3045|consen  153 HAGFRSQVKKWPE-NPLDVIIRKIKRR-PKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VN  211 (325)
T ss_pred             HHHHHHHHHhCCC-ChHHHHHHHHHhC-cCceEEEecccchhhhhh---ccccceeeeeeec----------------CC
Confidence            3344444445652 3334444444432 233689999999988775   3445899999844                24


Q ss_pred             eEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024008          159 VSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       159 v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      -.++.+|+.+ +.++++.|++++...++.   .++..++.++.++|++||.++|.+-..        .+.+...+...+.
T Consensus       212 ~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S--------Rf~dv~~f~r~l~  280 (325)
T KOG3045|consen  212 ERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS--------RFSDVKGFVRALT  280 (325)
T ss_pred             CceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh--------hcccHHHHHHHHH
Confidence            5788999988 778899999997666554   467789999999999999999988433        2336778999999


Q ss_pred             cCCCcEEEEeec
Q 024008          238 PMGFQAISIVDN  249 (274)
Q Consensus       238 ~~Gf~~~~~~~~  249 (274)
                      ..||.+......
T Consensus       281 ~lGF~~~~~d~~  292 (325)
T KOG3045|consen  281 KLGFDVKHKDVS  292 (325)
T ss_pred             HcCCeeeehhhh
Confidence            999998776653

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.95  E-value=8.5e-09  Score=87.81  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=71.0

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      +..++.... .++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+..++++++.+|+.+... ..||
T Consensus        25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d  103 (294)
T PTZ00338         25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFD  103 (294)
T ss_pred             HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccC
Confidence            334444333 35579999999999999999998889999999999999999998765544689999999987432 4689


Q ss_pred             EEEeccccccc
Q 024008          177 LIFDYTFFCAI  187 (274)
Q Consensus       177 ~v~~~~~~~~~  187 (274)
                      .|+++..+...
T Consensus       104 ~VvaNlPY~Is  114 (294)
T PTZ00338        104 VCVANVPYQIS  114 (294)
T ss_pred             EEEecCCcccC
Confidence            99988776643

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.94  E-value=1e-09  Score=84.55  Aligned_cols=75  Identities=21%  Similarity=0.345  Sum_probs=58.6

Q ss_pred             eEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---C-CeeEEEeccccc
Q 024008          111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---E-LFDLIFDYTFFC  185 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~-~fD~v~~~~~~~  185 (274)
                      .|+|+.||.|.+++.+++...+|+++|+++..++.|+.|+...|+.++++|+.+|+.+....   . .||+|+++.++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG   80 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG   80 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence            69999999999999999998899999999999999999999999889999999999884322   2 289999987765

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.94  E-value=2e-08  Score=80.86  Aligned_cols=121  Identities=15%  Similarity=0.055  Sum_probs=90.6

Q ss_pred             EEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEecccccccC
Q 024008          112 ALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYTFFCAIE  188 (274)
Q Consensus       112 vLDiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~fD~v~~~~~~~~~~  188 (274)
                      |.||||-.|++..+|.+.|.  +++++|+++..++.|++++...++.+++++..+|-.+....+ ..|.|+..++    .
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence            68999999999999999876  899999999999999999999999999999999988754444 4899985544    3


Q ss_pred             hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          189 PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       189 ~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ......+++.....++....+++.-.            .....+++++.++||.+++-.-
T Consensus        77 G~lI~~ILe~~~~~~~~~~~lILqP~------------~~~~~LR~~L~~~gf~I~~E~l  124 (205)
T PF04816_consen   77 GELIIEILEAGPEKLSSAKRLILQPN------------THAYELRRWLYENGFEIIDEDL  124 (205)
T ss_dssp             HHHHHHHHHHTGGGGTT--EEEEEES------------S-HHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHHhhHHHhccCCeEEEeCC------------CChHHHHHHHHHCCCEEEEeEE
Confidence            34566778888777776666666432            1578999999999999887554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.93  E-value=5.2e-09  Score=83.79  Aligned_cols=99  Identities=15%  Similarity=0.116  Sum_probs=74.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      ..++..|+|+.||.|.+++.+++  .+..|+++|++|.+++.+++++..+++.+++..+.+|.....+...||-|++..+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp  178 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP  178 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence            45678999999999999999998  6779999999999999999999999998889999999988666789999997654


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      -..      ..++..+..++++||.+-
T Consensus       179 ~~~------~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  179 ESS------LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             SSG------GGGHHHHHHHEEEEEEEE
T ss_pred             HHH------HHHHHHHHHHhcCCcEEE
Confidence            332      246788999999998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.93  E-value=1.9e-08  Score=74.74  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCcch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024008          108 PKGRALVPGCGTGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~-~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~  184 (274)
                      ++.+|||||||.|. .+..|++.|..|+++|+++.+++.++++.        ++++.+|++++..  ...+|+|++... 
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~y~~a~liysirp-   86 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEIYKNAKLIYSIRP-   86 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence            45789999999996 88888889999999999999999887774        7899999998543  468999997543 


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                          +.++...+-++.+.+  |.-+++...+.
T Consensus        87 ----p~el~~~~~~la~~~--~~~~~i~~l~~  112 (134)
T PRK04148         87 ----PRDLQPFILELAKKI--NVPLIIKPLSG  112 (134)
T ss_pred             ----CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence                234444445555543  44566555443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.93  E-value=1.5e-08  Score=88.86  Aligned_cols=137  Identities=16%  Similarity=0.066  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC----------------
Q 024008          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----------------  172 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----------------  172 (274)
                      +.+|||++||+|.++..+++...+|+|+|+++++++.|++++..++.. +++|+.+|+.+....                
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            357999999999999999886679999999999999999999888763 699999999762211                


Q ss_pred             -CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC-HHHHHHHHhcCCCcEEEEeecc
Q 024008          173 -ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS-VSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       173 -~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                       ..||+|+....=..+.    ..+++.+.+   |++++++.+.+.           + ..++. .|.+ ||++..+...+
T Consensus       277 ~~~~d~v~lDPPR~G~~----~~~l~~l~~---~~~ivYvsC~p~-----------tlaRDl~-~L~~-~Y~l~~v~~~D  336 (353)
T TIGR02143       277 SYNCSTIFVDPPRAGLD----PDTCKLVQA---YERILYISCNPE-----------TLKANLE-QLSE-THRVERFALFD  336 (353)
T ss_pred             cCCCCEEEECCCCCCCc----HHHHHHHHc---CCcEEEEEcCHH-----------HHHHHHH-HHhc-CcEEEEEEEcc
Confidence             2379999655522222    334444443   788888887332           2 23443 3443 59999888755


Q ss_pred             cccCCccchhHHHHhhh
Q 024008          251 LAIGPRKGREKLGRWKR  267 (274)
Q Consensus       251 ~~~~~~~~~~~~~~~~~  267 (274)
                      . ++.-+..|++.++.|
T Consensus       337 m-FP~T~HvE~v~lL~r  352 (353)
T TIGR02143       337 Q-FPYTHHMECGVLLER  352 (353)
T ss_pred             c-CCCCCcEEEEEEEEe
Confidence            3 222335666655543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.92  E-value=5e-08  Score=78.12  Aligned_cols=110  Identities=22%  Similarity=0.268  Sum_probs=89.6

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----  169 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----  169 (274)
                      .+..+++  ...++++||+|.=||+.+...+.   .+.+|+++|++++..+.+.+..+.+++.+++++++++..+.    
T Consensus        64 fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l  141 (237)
T KOG1663|consen   64 FLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL  141 (237)
T ss_pred             HHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence            3444444  34578999999999999887776   57799999999999999999999999999999999998862    


Q ss_pred             ---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          170 ---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       170 ---~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                         ...+.||++|.    .+ +.+....+.+++.+++++||+|++-.
T Consensus       142 ~~~~~~~tfDfaFv----Da-dK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  142 LADGESGTFDFAFV----DA-DKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HhcCCCCceeEEEE----cc-chHHHHHHHHHHHhhcccccEEEEec
Confidence               23568999982    32 34555688999999999999998744

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.90  E-value=1.6e-08  Score=80.01  Aligned_cols=128  Identities=19%  Similarity=0.268  Sum_probs=97.5

Q ss_pred             CeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          110 GRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      .+++|+|+|.|.-++.++  .+..+++.+|....-+...+......+++ |++++.+.+.+.....+||+|++..+-.  
T Consensus        50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~~--  126 (184)
T PF02527_consen   50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVAP--  126 (184)
T ss_dssp             SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSSS--
T ss_pred             ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhcC--
Confidence            389999999998887654  48889999999999999999888888774 6999999998755668999999988743  


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                          ...+++-+...+++||.++..-        |+...-..++....++..|.+...+.....+
T Consensus       127 ----l~~l~~~~~~~l~~~G~~l~~K--------G~~~~~El~~~~~~~~~~~~~~~~v~~~~~~  179 (184)
T PF02527_consen  127 ----LDKLLELARPLLKPGGRLLAYK--------GPDAEEELEEAKKAWKKLGLKVLSVPEFELP  179 (184)
T ss_dssp             ----HHHHHHHHGGGEEEEEEEEEEE--------SS--HHHHHTHHHHHHCCCEEEEEEEEEE-T
T ss_pred             ----HHHHHHHHHHhcCCCCEEEEEc--------CCChHHHHHHHHhHHHHhCCEEeeeccccCC
Confidence                2467788999999999999886        3222224556677788888888888776543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.89  E-value=1.7e-08  Score=82.40  Aligned_cols=102  Identities=25%  Similarity=0.199  Sum_probs=83.5

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEeccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~~~  183 (274)
                      ..+||||||.|..+..+|+  +...++|||+....+..|...+...++. |+.+++.|+..    ..++++.|-|+.+..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            5899999999999999988  6779999999999999999999888764 89999999987    445569999997644


Q ss_pred             ccccCh-hH------HHHHHHHHHhcccCCcEEEEEE
Q 024008          184 FCAIEP-EM------RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~-~~------~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      =-+ +. ..      ...+++.+.+.|+|||.|.+.+
T Consensus       129 DPW-pKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         129 DPW-PKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             CCC-CCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            221 11 01      1578999999999999998865

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.89  E-value=4e-08  Score=80.43  Aligned_cols=137  Identities=14%  Similarity=0.092  Sum_probs=85.0

Q ss_pred             HHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHH-HHHHhhcCCCCcce-EEEEcccCC----
Q 024008           98 IVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKK-AEELSSSLPNAKFV-SFLKADFFT----  168 (274)
Q Consensus        98 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-a~~~~~~~~~~~~v-~~~~~d~~~----  168 (274)
                      +..++...  ..++.+|||+|||+|.++..+++.|+ +|+++|+++.++.. .+++.       ++ .+...|+..    
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ni~~~~~~  135 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERTNIRYVTPA  135 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecCCcccCCHh
Confidence            44444443  24567999999999999999999866 89999999987765 33321       22 233334332    


Q ss_pred             -CC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----C-CC-----CcccCHHHHHHH
Q 024008          169 -WC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----G-GP-----PYKVSVSDYEEV  235 (274)
Q Consensus       169 -~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----~-~~-----~~~~~~~~~~~~  235 (274)
                       .. .-..+|+++++.          ..++..+.++|++ |.+++..-+..+..     . |.     .+....+++...
T Consensus       136 ~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~  204 (228)
T TIGR00478       136 DIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDK  204 (228)
T ss_pred             HcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHH
Confidence             11 112566666432          2357789999999 87766542221110     0 10     011245677788


Q ss_pred             HhcCCCcEEEEeecccc
Q 024008          236 LQPMGFQAISIVDNKLA  252 (274)
Q Consensus       236 ~~~~Gf~~~~~~~~~~~  252 (274)
                      +.+.||.+..+...+..
T Consensus       205 ~~~~~~~~~~~~~s~i~  221 (228)
T TIGR00478       205 GESPDFQEKKIIFSLTK  221 (228)
T ss_pred             HHcCCCeEeeEEECCCC
Confidence            88899999888875543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.88  E-value=1.7e-08  Score=84.84  Aligned_cols=85  Identities=12%  Similarity=0.065  Sum_probs=68.1

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      +..+++... .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....   ++++++.+|+.+... ..||
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~-~~~d   93 (258)
T PRK14896         18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL-PEFN   93 (258)
T ss_pred             HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc-hhce
Confidence            344444333 35679999999999999999998889999999999999999887542   579999999987432 3489


Q ss_pred             EEEecccccc
Q 024008          177 LIFDYTFFCA  186 (274)
Q Consensus       177 ~v~~~~~~~~  186 (274)
                      .|+++..++.
T Consensus        94 ~Vv~NlPy~i  103 (258)
T PRK14896         94 KVVSNLPYQI  103 (258)
T ss_pred             EEEEcCCccc
Confidence            9999887663

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.88  E-value=4.6e-08  Score=82.78  Aligned_cols=85  Identities=15%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC-
Q 024008           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL-  174 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  174 (274)
                      .+..+++... .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++...    ++++++.+|+.+...+.- 
T Consensus        30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~  105 (272)
T PRK00274         30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQ  105 (272)
T ss_pred             HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcC
Confidence            3444554443 3557999999999999999999777999999999999999987643    479999999987433221 


Q ss_pred             eeEEEeccccc
Q 024008          175 FDLIFDYTFFC  185 (274)
Q Consensus       175 fD~v~~~~~~~  185 (274)
                      ++.|+++..+.
T Consensus       106 ~~~vv~NlPY~  116 (272)
T PRK00274        106 PLKVVANLPYN  116 (272)
T ss_pred             cceEEEeCCcc
Confidence            58888887654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.4e-08  Score=79.89  Aligned_cols=111  Identities=19%  Similarity=0.184  Sum_probs=84.6

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCC---------CCcceEE
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSF  161 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~---------~~~~v~~  161 (274)
                      +..+.+++.....++.+.||+|+|+|+++.-++.    .|...+|||.-++.++.+++++...-         ...++.+
T Consensus        69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i  148 (237)
T KOG1661|consen   69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI  148 (237)
T ss_pred             HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence            3334445554456788999999999999876664    55667999999999999999986643         1356889


Q ss_pred             EEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          162 LKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       162 ~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +.+|... .....+||.|.+-.....        .-+++.+.|++||.+++..
T Consensus       149 vvGDgr~g~~e~a~YDaIhvGAaa~~--------~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  149 VVGDGRKGYAEQAPYDAIHVGAAASE--------LPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             EeCCccccCCccCCcceEEEccCccc--------cHHHHHHhhccCCeEEEee
Confidence            9999988 556689999997644332        3367888899999999865

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.85  E-value=6e-08  Score=81.31  Aligned_cols=87  Identities=15%  Similarity=0.127  Sum_probs=66.8

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024008           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  173 (274)
                      ...+..+++... .++.+|||+|||+|..+..+++.+..++++|+++.+++.++++....   .+++++.+|+...... 
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~---~~v~v~~~D~~~~~~~-   90 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY---ERLEVIEGDALKVDLP-   90 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC---CcEEEEECchhcCChh-
Confidence            334455555443 35579999999999999999998888999999999999999887542   5799999999874432 


Q ss_pred             Cee---EEEeccccc
Q 024008          174 LFD---LIFDYTFFC  185 (274)
Q Consensus       174 ~fD---~v~~~~~~~  185 (274)
                      .+|   +|+++..++
T Consensus        91 ~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        91 DFPKQLKVVSNLPYN  105 (253)
T ss_pred             HcCCcceEEEcCChh
Confidence            466   777766544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN02823 spermine synthase

Probab=98.84  E-value=3.7e-08  Score=85.23  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=79.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-~-~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~fD~v~~  180 (274)
                      .+.+||.+|+|.|..+..+++ . ..+++++|+++++++.|++......   ..++++++.+|....  ...++||+|+.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            457999999999999998877 3 3589999999999999999886432   247899999999883  23468999997


Q ss_pred             ccccccc---Chh--HHHHHHH-HHHhcccCCcEEEEEE
Q 024008          181 YTFFCAI---EPE--MRAAWAQ-KIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~---~~~--~~~~~l~-~l~~~L~~gG~l~~~~  213 (274)
                      -.. ...   +..  ....+++ .+.+.|+|||++++..
T Consensus       183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            521 111   000  1245677 8999999999987643

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=9.2e-08  Score=85.42  Aligned_cols=126  Identities=20%  Similarity=0.216  Sum_probs=98.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~  183 (274)
                      ++.+|||+=||.|.+++.+++...+|+|+|+++++++.|++++..++..+ ++|+.+|..+..+    ...+|.|+....
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP  371 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP  371 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence            44799999999999999999999999999999999999999999998865 9999999988332    247899995444


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      =..++    ..+++.+.+ ++|-.++++++.+.           |...-.+.+.+.||.+.++...+
T Consensus       372 R~G~~----~~~lk~l~~-~~p~~IvYVSCNP~-----------TlaRDl~~L~~~gy~i~~v~~~D  422 (432)
T COG2265         372 RAGAD----REVLKQLAK-LKPKRIVYVSCNPA-----------TLARDLAILASTGYEIERVQPFD  422 (432)
T ss_pred             CCCCC----HHHHHHHHh-cCCCcEEEEeCCHH-----------HHHHHHHHHHhCCeEEEEEEEec
Confidence            33332    234444444 77888899988433           56666678888899877776643

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.82  E-value=6.9e-08  Score=82.94  Aligned_cols=132  Identities=15%  Similarity=0.045  Sum_probs=105.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~  184 (274)
                      .++.+|||.-+|.|.+++.+++.+.. |+++|+||.+++..++|+..+++.+.+..+.+|.....+. +.+|-|+...+-
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~  266 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK  266 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence            44789999999999999999997764 9999999999999999999999988899999999986555 889999976543


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .      ...++....+++++||.+-...+.+.+....    ....++.......|+++.....
T Consensus       267 ~------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----~~~~~i~~~~~~~~~~~~v~~~  320 (341)
T COG2520         267 S------AHEFLPLALELLKDGGIIHYYEFVPEDDIEE----RPEKRIKSAARKGGYKVEVLKV  320 (341)
T ss_pred             c------chhhHHHHHHHhhcCcEEEEEeccchhhccc----chHHHHHHHHhhccCcceEEEE
Confidence            2      2456788889999999999888766543221    2467788888888875544443

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=8.7e-08  Score=78.39  Aligned_cols=129  Identities=21%  Similarity=0.179  Sum_probs=98.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CC-CCCCeeEEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WC-PTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~-~~~~fD~v~  179 (274)
                      ..|+.+|+|-|+|+|.++.++++   +-.+++.+|+.....+.|.+..+..++.+++++..-|+..  +. ....+|.|+
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF  182 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF  182 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence            46778999999999999999998   3459999999999999999999999999999999999987  22 256899998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      .       +-+..+..+..+.+.|+.+|.- ++.|++.        .--.+.-.+.+.+.||..+...+..
T Consensus       183 L-------DlPaPw~AiPha~~~lk~~g~r-~csFSPC--------IEQvqrtce~l~~~gf~~i~~vEv~  237 (314)
T KOG2915|consen  183 L-------DLPAPWEAIPHAAKILKDEGGR-LCSFSPC--------IEQVQRTCEALRSLGFIEIETVEVL  237 (314)
T ss_pred             E-------cCCChhhhhhhhHHHhhhcCce-EEeccHH--------HHHHHHHHHHHHhCCCceEEEEEee
Confidence            3       3334466778888899988742 2333332        1134566778888899877666543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.77  E-value=7.5e-08  Score=81.46  Aligned_cols=136  Identities=15%  Similarity=0.158  Sum_probs=92.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      ..+.+|||+|||+|..+..+..  + -.+++++|.|+.+++.++....................+..+..+.|+|++.++
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~  111 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV  111 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence            4568999999999987765554  2 348999999999999999887654321111111111111222234499999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +..++...+..+++.+.+.+++  .+++++.+....      +-...+..+.+.+.|+.++-=....
T Consensus       112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G------f~~i~~aR~~l~~~~~~v~APCph~  170 (274)
T PF09243_consen  112 LNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG------FRRIAEARDQLLEKGAHVVAPCPHD  170 (274)
T ss_pred             hhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH------HHHHHHHHHHHhhCCCceECCCccC
Confidence            9999878888999999888876  888887554321      1146677777777787776555443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.76  E-value=1.9e-07  Score=73.27  Aligned_cols=120  Identities=21%  Similarity=0.099  Sum_probs=89.8

Q ss_pred             cHHHHHHHhcCC---CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-
Q 024008           95 APIIVHLHQSGA---LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-  169 (274)
Q Consensus        95 ~~~~~~~~~~~~---~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  169 (274)
                      ...-+.++..+.   ..+.++||+-+|+|.++...+.+|+ .++.||.+..++...++|+...+...++.++..|.... 
T Consensus        27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L  106 (187)
T COG0742          27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL  106 (187)
T ss_pred             hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence            444445555542   5678999999999999999999887 89999999999999999999887778899999998852 


Q ss_pred             -CCC--CCeeEEEecccccc-cChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          170 -CPT--ELFDLIFDYTFFCA-IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       170 -~~~--~~fD~v~~~~~~~~-~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                       ...  +.||+|+.-..++. +-+.......-.-..+|+|+|.+++...
T Consensus       107 ~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         107 KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence             122  35999998888772 1111222222224578999999988663

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.76  E-value=4.8e-07  Score=77.70  Aligned_cols=104  Identities=12%  Similarity=-0.011  Sum_probs=79.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEE--EEcccCCC---CC----C
Q 024008          108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSF--LKADFFTW---CP----T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~---~~----~  172 (274)
                      ++..|+|+|||.|.-+..|.+      ....++++|+|.++++.+..++..... +.+++  +.+|+.+.   .+    .
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence            445899999999987655544      346899999999999999999872222 33544  88888662   21    2


Q ss_pred             CCeeEEEecc-cccccChhHHHHHHHHHHh-cccCCcEEEEE
Q 024008          173 ELFDLIFDYT-FFCAIEPEMRAAWAQKIKD-FLKPDGELITL  212 (274)
Q Consensus       173 ~~fD~v~~~~-~~~~~~~~~~~~~l~~l~~-~L~~gG~l~~~  212 (274)
                      ....+++..+ ++..+++++...+++++.+ .|+|||.+++.
T Consensus       155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            3456776664 8999998888999999999 99999998873

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.75  E-value=1.7e-07  Score=74.82  Aligned_cols=119  Identities=19%  Similarity=0.251  Sum_probs=91.4

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC---CCCCeeEEEeccccc
Q 024008          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC---PTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---~~~~fD~v~~~~~~~  185 (274)
                      .++|||||=+..+...- ..-..|+.||+++.                .-.+.+.|+.+ +.   +.++||+|.++.|+.
T Consensus        53 lrlLEVGals~~N~~s~-~~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN  115 (219)
T PF11968_consen   53 LRLLEVGALSTDNACST-SGWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN  115 (219)
T ss_pred             ceEEeecccCCCCcccc-cCceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence            59999999655544321 13348999999873                24578888887 33   357899999999999


Q ss_pred             ccC-hhHHHHHHHHHHhcccCCcE-----EEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          186 AIE-PEMRAAWAQKIKDFLKPDGE-----LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~-~~~~~~~l~~l~~~L~~gG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +++ +..+-..+.++.+.|+|+|.     ++++...+...  + ...++.+.+.++++.-||..++.+.
T Consensus       116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~--N-SRy~~~~~l~~im~~LGf~~~~~~~  181 (219)
T PF11968_consen  116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVT--N-SRYMTEERLREIMESLGFTRVKYKK  181 (219)
T ss_pred             eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhh--c-ccccCHHHHHHHHHhCCcEEEEEEe
Confidence            997 56888999999999999999     88876544321  2 2235889999999999999988866

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.69  E-value=1.4e-07  Score=76.07  Aligned_cols=132  Identities=17%  Similarity=0.163  Sum_probs=103.0

Q ss_pred             CCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC-eeEEEeccccc
Q 024008          109 KGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL-FDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-fD~v~~~~~~~  185 (274)
                      +.+++|||+|.|.-++.++  .+..+++-+|....-+...+....+.++ +|++++.+.+.+.....+ ||+|.+..+-.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vtsRAva~  146 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTSRAVAS  146 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEeehccc
Confidence            5799999999999988755  4777899999999999999988888776 469999999988655444 99999987733


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~  255 (274)
                            +..+++-+..++++||.++..-+....        -...+..+.....|+.+..+.....+...
T Consensus       147 ------L~~l~e~~~pllk~~g~~~~~k~~~~~--------~e~~e~~~a~~~~~~~~~~~~~~~~p~~~  202 (215)
T COG0357         147 ------LNVLLELCLPLLKVGGGFLAYKGLAGK--------DELPEAEKAILPLGGQVEKVFSLTVPELD  202 (215)
T ss_pred             ------hHHHHHHHHHhcccCCcchhhhHHhhh--------hhHHHHHHHHHhhcCcEEEEEEeecCCCC
Confidence                  345667788999999987654432211        13567777888889999999887776664

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.69  E-value=2.1e-07  Score=77.41  Aligned_cols=129  Identities=18%  Similarity=0.095  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCC-CeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTE-LFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~-~fD~v  178 (274)
                      ..+.+||-||.|.|..+..+.+.  ..+++++|+++.+++.|++..+...   .++|++++.+|....  ...+ +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            35789999999999999999883  3599999999999999999876421   247899999999872  2234 89999


Q ss_pred             EecccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024008          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf  241 (274)
                      +.-..-...+..  ....+++.+.+.|+|||++++...++...      .-....+.+.+++...
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~------~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH------PELFKSILKTLRSVFP  213 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT------HHHHHHHHHHHHTTSS
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc------hHHHHHHHHHHHHhCC
Confidence            974322111111  12578899999999999999876332211      0123455667777655

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.69  E-value=1.8e-07  Score=76.59  Aligned_cols=89  Identities=21%  Similarity=0.222  Sum_probs=73.8

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      +.+++... ..+++.|||+|.|||.++..+.+.+.+|+++|+++.++....++...-..+.+..++.+|+.+... ..||
T Consensus        47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~fd  125 (315)
T KOG0820|consen   47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PRFD  125 (315)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cccc
Confidence            34444444 345689999999999999999999999999999999999999999888777899999999998542 3589


Q ss_pred             EEEeccccccc
Q 024008          177 LIFDYTFFCAI  187 (274)
Q Consensus       177 ~v~~~~~~~~~  187 (274)
                      .++++-.+...
T Consensus       126 ~cVsNlPyqIS  136 (315)
T KOG0820|consen  126 GCVSNLPYQIS  136 (315)
T ss_pred             eeeccCCcccc
Confidence            99987666543

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=3.8e-08  Score=72.88  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~  183 (274)
                      ...+++++|+|||.|.+....+-.+. .|+|+|++|++++.+.+|..+..+  .++++++|+..+.+ .+.||.++.+..
T Consensus        46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNpp  123 (185)
T KOG3420|consen   46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPP  123 (185)
T ss_pred             cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCC
Confidence            46788999999999999987777655 899999999999999999987654  47999999988443 368999999988


Q ss_pred             ccc
Q 024008          184 FCA  186 (274)
Q Consensus       184 ~~~  186 (274)
                      |.-
T Consensus       124 FGT  126 (185)
T KOG3420|consen  124 FGT  126 (185)
T ss_pred             CCc
Confidence            764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=3.9e-07  Score=75.42  Aligned_cols=86  Identities=13%  Similarity=0.082  Sum_probs=70.5

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC--C
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE--L  174 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~  174 (274)
                      +...+.... .++..|||||+|.|.++..|++.+.+|+++|+++..++..++.....   ++++++.+|+.+...+.  .
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l~~   95 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSLAQ   95 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhhcC
Confidence            444555443 34589999999999999999999999999999999999999997633   57999999999855444  6


Q ss_pred             eeEEEecccccc
Q 024008          175 FDLIFDYTFFCA  186 (274)
Q Consensus       175 fD~v~~~~~~~~  186 (274)
                      ++.|+++-.+.-
T Consensus        96 ~~~vVaNlPY~I  107 (259)
T COG0030          96 PYKVVANLPYNI  107 (259)
T ss_pred             CCEEEEcCCCcc
Confidence            889998877663

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.65  E-value=8.9e-08  Score=84.52  Aligned_cols=98  Identities=14%  Similarity=0.015  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~  185 (274)
                      +.+|||++||+|..++.++. .+ .+|+++|+++.+++.+++|+..+++. ++++..+|+..... .++||+|+... +.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~G  135 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-FG  135 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-CC
Confidence            35899999999999999876 34 38999999999999999999887764 57789999876433 46799999754 22


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                       .+    ..+++...+.+++||+++++.
T Consensus       136 -s~----~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        136 -SP----APFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             -Cc----HHHHHHHHHHhcCCCEEEEEe
Confidence             21    356777777789999999974

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.64  E-value=4.9e-08  Score=77.37  Aligned_cols=99  Identities=19%  Similarity=0.274  Sum_probs=79.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~~  182 (274)
                      ....|+|.-||.|+.+++++..+..|++||++|.-+..|+.|++..|..++|+|++||+.+..     ....+|+|+.+.
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP  173 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence            457899999999999999999999999999999999999999999999889999999998732     234577888887


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGE  208 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~  208 (274)
                      .+..-  +....-+-.+...+.|.|.
T Consensus       174 pwggp--~y~~~~~~DL~~~~~p~~~  197 (263)
T KOG2730|consen  174 PWGGP--SYLRADVYDLETHLKPMGT  197 (263)
T ss_pred             CCCCc--chhhhhhhhhhhhcchhHH
Confidence            76653  2223334456666666543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.63  E-value=2e-07  Score=78.61  Aligned_cols=103  Identities=20%  Similarity=0.226  Sum_probs=82.0

Q ss_pred             CeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--C-CcceEEEEcccCCCC--CCCCeeEEEecc
Q 024008          110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTWC--PTELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~--~~~~fD~v~~~~  182 (274)
                      ++||-||.|.|..+..+.+.  -.+++.+|+++..++.+++.++...  . .+|++++.+|..+..  ..++||+|+.-.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            69999999999999999983  3599999999999999999987653  2 479999999998832  234899999754


Q ss_pred             cccccCh-h--HHHHHHHHHHhcccCCcEEEEEE
Q 024008          183 FFCAIEP-E--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~-~--~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .-. ..+ +  -...+++.+.++|+++|+++...
T Consensus       158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            322 111 0  12578899999999999998874

>PRK00536 speE spermidine synthase; Provisional

Probab=98.63  E-value=3.9e-07  Score=75.95  Aligned_cols=98  Identities=14%  Similarity=0.036  Sum_probs=75.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      ..+++||=||.|.|..++.+++-..+|+.+|+++++++.+++.++...   .++|++++.. + .....++||+|+.-..
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~-~~~~~~~fDVIIvDs~  148 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L-LDLDIKKYDLIICLQE  148 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h-hhccCCcCCEEEEcCC
Confidence            446899999999999999999944599999999999999999766521   2467887752 2 1222468999996533


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                          ++   ..+.+.++++|+|||+++.-.
T Consensus       149 ----~~---~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        149 ----PD---IHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             ----CC---hHHHHHHHHhcCCCcEEEECC
Confidence                11   356789999999999998854

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.62  E-value=4.4e-08  Score=86.93  Aligned_cols=145  Identities=12%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEe---CChHHHHHHHHHhhcCCCCcceEEEEccc--CC-CCCCCCeeEEEeccc
Q 024008          110 GRALVPGCGTGYDVVAMASPERYVVGLE---ISDIAIKKAEELSSSLPNAKFVSFLKADF--FT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD---~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~~~~~~fD~v~~~~~  183 (274)
                      +.+||+|||+|.++..+.+.+..+..+-   ..+.++..|-++-        +..+.+-+  .. +.|++.||+|.|..+
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG--------vpa~~~~~~s~rLPfp~~~fDmvHcsrc  190 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG--------VPAMIGVLGSQRLPFPSNAFDMVHCSRC  190 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC--------cchhhhhhccccccCCccchhhhhcccc
Confidence            5789999999999999999877555543   3445555665442        22222222  12 678899999999988


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHH
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLG  263 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~  263 (274)
                      +..+.... ..++-++.|+|+|||++++...+.... ......-....+.++.++.-|+.+.......-..-..+..++.
T Consensus       191 ~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r-~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~  268 (506)
T PF03141_consen  191 LIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQR-TDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQ  268 (506)
T ss_pred             cccchhcc-cceeehhhhhhccCceEEecCCccccc-chHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhh
Confidence            77664332 457889999999999999877555411 1111112456677777777777766555433222222345554


Q ss_pred             H
Q 024008          264 R  264 (274)
Q Consensus       264 ~  264 (274)
                      .
T Consensus       269 ~  269 (506)
T PF03141_consen  269 K  269 (506)
T ss_pred             h
Confidence            3

; GO: 0008168 methyltransferase activity

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.60  E-value=9.8e-07  Score=77.38  Aligned_cols=144  Identities=19%  Similarity=0.233  Sum_probs=86.5

Q ss_pred             HhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024008          102 HQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (274)
Q Consensus       102 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------  170 (274)
                      ++.....+..|||+-||.|.++..+++...+|+|+|.++++++.|++++..++. ++++|+.++..+..           
T Consensus       190 ~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~  268 (352)
T PF05958_consen  190 LEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNR  268 (352)
T ss_dssp             HHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred             HHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHh
Confidence            344444445899999999999999999999999999999999999999999887 47999987654311           


Q ss_pred             ------CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC-HHHHHHHHhcCCCcE
Q 024008          171 ------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS-VSDYEEVLQPMGFQA  243 (274)
Q Consensus       171 ------~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gf~~  243 (274)
                            ....+|+|+.-.+=..++    ..+++.+.+   +.-++++++.+.           | ..++ +.|.+ ||++
T Consensus       269 ~~~~~~~~~~~d~vilDPPR~G~~----~~~~~~~~~---~~~ivYvSCnP~-----------tlaRDl-~~L~~-~y~~  328 (352)
T PF05958_consen  269 LKGIDLKSFKFDAVILDPPRAGLD----EKVIELIKK---LKRIVYVSCNPA-----------TLARDL-KILKE-GYKL  328 (352)
T ss_dssp             GGGS-GGCTTESEEEE---TT-SC----HHHHHHHHH---SSEEEEEES-HH-----------HHHHHH-HHHHC-CEEE
T ss_pred             hhhhhhhhcCCCEEEEcCCCCCch----HHHHHHHhc---CCeEEEEECCHH-----------HHHHHH-HHHhh-cCEE
Confidence                  123689998544333333    233444433   345566666222           3 3344 44554 9999


Q ss_pred             EEEeecccccCCccchhHHHHhhh
Q 024008          244 ISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      ..+...+. ++.-...|++.++.|
T Consensus       329 ~~v~~~Dm-FP~T~HvE~v~lL~r  351 (352)
T PF05958_consen  329 EKVQPVDM-FPQTHHVETVALLER  351 (352)
T ss_dssp             EEEEEE-S-STTSS--EEEEEEEE
T ss_pred             EEEEEeec-CCCCCcEEEEEEEEe
Confidence            88887543 233335666554433

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=6.2e-07  Score=72.41  Aligned_cols=149  Identities=19%  Similarity=0.154  Sum_probs=102.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcce-EEEEcccCCCCC---CCCeeEEEe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFTWCP---TELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~---~~~fD~v~~  180 (274)
                      ..++..+||+|+.||.++..+.+.|+ +|+++|....+++.--++-      +++ .+...|+....+   .+..|++++
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d------~rV~~~E~tN~r~l~~~~~~~~~d~~v~  150 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND------PRVIVLERTNVRYLTPEDFTEKPDLIVI  150 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC------CcEEEEecCChhhCCHHHcccCCCeEEE
Confidence            45678999999999999999999887 8999999887665443332      333 445556655322   246788887


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------CCCCcc-cCHHHHHHHHhcCCCcEEEEeec
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------GGPPYK-VSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      --.|..     ...++..+..++++++.++...-+.....          ..+..+ .....+.++++..||.+..+...
T Consensus       151 DvSFIS-----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S  225 (245)
T COG1189         151 DVSFIS-----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS  225 (245)
T ss_pred             Eeehhh-----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence            655553     35788999999999999887664432210          011111 24678889999999999999885


Q ss_pred             ccccCCccchhHHHHhhh
Q 024008          250 KLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~  267 (274)
                      +  +.+..++.++..|.+
T Consensus       226 p--i~G~~GNiE~l~~~~  241 (245)
T COG1189         226 P--IKGGKGNIEFLLLLK  241 (245)
T ss_pred             C--ccCCCCcEeeeeeee
Confidence            4  444445556665554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.57  E-value=4.6e-07  Score=83.09  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=81.5

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~  183 (274)
                      ...+||||||.|.++..+|.  +...++|+|+....+..+.......++ .|+.++..|+..   ..+++++|.|+.+..
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            36899999999999999988  677999999999999988888777665 468888888743   456788999997654


Q ss_pred             ccccChh------HHHHHHHHHHhcccCCcEEEEEE
Q 024008          184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~------~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      =-+.-..      .-..+++.+.+.|+|||.+.+..
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            3221000      01578899999999999998866

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.57  E-value=7.7e-07  Score=73.74  Aligned_cols=132  Identities=17%  Similarity=0.193  Sum_probs=83.1

Q ss_pred             CeEEEEcCCcc--hhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC---------C
Q 024008          110 GRALVPGCGTG--YDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP---------T  172 (274)
Q Consensus       110 ~~vLDiG~G~G--~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~---------~  172 (274)
                      ...||||||--  .+...+++   +.++|+-+|.+|-++..++..+..... .+..++.+|+.++   ..         -
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF  148 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence            68999999964  34445544   788999999999999999999876631 2489999999872   11         1


Q ss_pred             CCeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhc
Q 024008          173 ELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  238 (274)
                      .+.=.++...+++++++ ++...++..+.+.|.||.+++++.......             ...+.+.-+.+++.++|. 
T Consensus       149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~-  227 (267)
T PF04672_consen  149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD-  227 (267)
T ss_dssp             TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT-
T ss_pred             CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC-
Confidence            22335667788999865 678899999999999999999988765432             122233357888888887 


Q ss_pred             CCCcEE
Q 024008          239 MGFQAI  244 (274)
Q Consensus       239 ~Gf~~~  244 (274)
                       ||+++
T Consensus       228 -g~elv  232 (267)
T PF04672_consen  228 -GLELV  232 (267)
T ss_dssp             -TSEE-
T ss_pred             -CCccC
Confidence             78764

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.55  E-value=8.3e-08  Score=83.64  Aligned_cols=141  Identities=22%  Similarity=0.255  Sum_probs=110.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~  183 (274)
                      ..++..++|+|||.|....+++. .+..++|+|.++..+..+........++++..++.+|+.+ +.+++.||.+.+..+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence            34556899999999999999988 6789999999999999998888777777788888999988 678899999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-----------------CCCcccCHHHHHHHHhcCCCcEEEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-----------------GPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      .+|.+  ....++.+++++++|||+++..++.......                 ..+.......+-.++...||.....
T Consensus       188 ~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~  265 (364)
T KOG1269|consen  188 VCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKL  265 (364)
T ss_pred             cccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhh
Confidence            99985  4467899999999999999986654322100                 0122234555666777777776664


Q ss_pred             ee
Q 024008          247 VD  248 (274)
Q Consensus       247 ~~  248 (274)
                      ++
T Consensus       266 ~~  267 (364)
T KOG1269|consen  266 EK  267 (364)
T ss_pred             cc
Confidence            43

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.53  E-value=1.2e-06  Score=76.00  Aligned_cols=107  Identities=17%  Similarity=0.248  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-----------------------------------------eEEEEeCChHHHHH
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-----------------------------------------YVVGLEISDIAIKK  145 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-----------------------------------------~v~~iD~s~~~~~~  145 (274)
                      .++..++|.-||+|.+++..+..+.                                         .++|+|+++.+++.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            3446899999999999987776321                                         37799999999999


Q ss_pred             HHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccccc-cChh-----HHHHHHHHHHhcccCCcEEEEEE
Q 024008          146 AEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCA-IEPE-----MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       146 a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~-~~~~-----~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      |+.|+...|+.+.|+|.++|+..+.++ +.+|+|+++.++.- +..+     ....+.+.+.+.++--+..+++.
T Consensus       270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            999999999999999999999986555 88999999988764 2221     23445556667777666666654

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.50  E-value=1.5e-06  Score=74.01  Aligned_cols=137  Identities=14%  Similarity=0.234  Sum_probs=96.7

Q ss_pred             CeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHh--hcC---C-CCcceEEEEcccCCCC--CCCCeeEEE
Q 024008          110 GRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTWC--PTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~--~~~---~-~~~~v~~~~~d~~~~~--~~~~fD~v~  179 (274)
                      .+||-+|.|.|..+..+.+ ++ .+++-+|++|++++.++.+.  ...   . .+++++++..|.+++.  ..+.||.|+
T Consensus       291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI  370 (508)
T COG4262         291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI  370 (508)
T ss_pred             ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence            6999999999999999998 54 49999999999999998432  221   1 2578999999999843  345899998


Q ss_pred             eccc------ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          180 DYTF------FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       180 ~~~~------~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      .-..      +..+   ....+..-+.+.|+++|.+++-..++.....      .--.+.+.++++||.+...+.....+
T Consensus       371 VDl~DP~tps~~rl---YS~eFY~ll~~~l~e~Gl~VvQags~y~tp~------vfw~i~aTik~AG~~~~Pyhv~VPTF  441 (508)
T COG4262         371 VDLPDPSTPSIGRL---YSVEFYRLLSRHLAETGLMVVQAGSPYFTPR------VFWRIDATIKSAGYRVWPYHVHVPTF  441 (508)
T ss_pred             EeCCCCCCcchhhh---hhHHHHHHHHHhcCcCceEEEecCCCccCCc------eeeeehhHHHhCcceeeeeEEecCcc
Confidence            5311      1111   1245667889999999999987633321111      12356778899999887776655444


Q ss_pred             CC
Q 024008          254 GP  255 (274)
Q Consensus       254 ~~  255 (274)
                      +.
T Consensus       442 Ge  443 (508)
T COG4262         442 GE  443 (508)
T ss_pred             cc
Confidence            43

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.50  E-value=1.7e-06  Score=82.60  Aligned_cols=106  Identities=16%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC------C--------------------------------------CCeEEEEeCChHHH
Q 024008          108 PKGRALVPGCGTGYDVVAMAS------P--------------------------------------ERYVVGLEISDIAI  143 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~------~--------------------------------------~~~v~~iD~s~~~~  143 (274)
                      ++..++|.+||+|.+++..+.      +                                      ..+++|+|+++.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            457999999999999877653      1                                      12699999999999


Q ss_pred             HHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEeccccccc-C-hhHHHHHHHHHHhcc---cCCcEEEEEE
Q 024008          144 KKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCAI-E-PEMRAAWAQKIKDFL---KPDGELITLM  213 (274)
Q Consensus       144 ~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~~~~~~~-~-~~~~~~~l~~l~~~L---~~gG~l~~~~  213 (274)
                      +.|+.|+...++.+.++|..+|+.+...   .++||+|+++..+..- . ......+...+.+.+   .+|+.+++..
T Consensus       270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt  347 (702)
T PRK11783        270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS  347 (702)
T ss_pred             HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            9999999999988889999999987432   2469999999887542 1 223333334444444   4888877665

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.49  E-value=3.3e-06  Score=76.38  Aligned_cols=110  Identities=20%  Similarity=0.147  Sum_probs=83.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~  180 (274)
                      ..++.+|||++||.|.=+..++.   ....+++.|+++..+...++++...|.. ++.+...|...+  ...+.||.|+.
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEEE
Confidence            45678999999999999988877   2348999999999999999999998874 588888887653  22467999995


Q ss_pred             ccccc------c-------cChhH-------HHHHHHHHHhcccCCcEEEEEEccC
Q 024008          181 YTFFC------A-------IEPEM-------RAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       181 ~~~~~------~-------~~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      -....      .       ++++.       -..++....+.|+|||+++.++++.
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            43322      1       11111       1578899999999999998777554

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.46  E-value=1.1e-06  Score=66.93  Aligned_cols=84  Identities=19%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCCCCCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~fD~v  178 (274)
                      .+..+|+|+|||.|+++..++.      .+.+|+++|.++..++.+.++....+  +..++.+..++..........+++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL  103 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence            4457999999999999998887      57799999999999999998887765  445677777777654446678999


Q ss_pred             EecccccccChh
Q 024008          179 FDYTFFCAIEPE  190 (274)
Q Consensus       179 ~~~~~~~~~~~~  190 (274)
                      +..++-..+.+.
T Consensus       104 vgLHaCG~Ls~~  115 (141)
T PF13679_consen  104 VGLHACGDLSDR  115 (141)
T ss_pred             EEeecccchHHH
Confidence            988887766543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.44  E-value=1.5e-06  Score=75.03  Aligned_cols=137  Identities=19%  Similarity=0.197  Sum_probs=85.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---------CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCCC---CC
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWCP---TE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---------~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~---~~  173 (274)
                      .++.+|+|..||+|.++..+.+         ...+++|+|+++.++..|+.++.-.+.. .+..+..+|......   ..
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~  124 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ  124 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            3445899999999999877765         4669999999999999998876554432 234688888876222   46


Q ss_pred             CeeEEEeccccccc--Ch-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024008          174 LFDLIFDYTFFCAI--EP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE  234 (274)
Q Consensus       174 ~fD~v~~~~~~~~~--~~-----------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      +||+|+++.++...  ..                 ..-..++.++.+.|++||++.++.........     .....+++
T Consensus       125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~-----~~~~~iR~  199 (311)
T PF02384_consen  125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSS-----SSEKKIRK  199 (311)
T ss_dssp             -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGS-----THHHHHHH
T ss_pred             ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhcc-----chHHHHHH
Confidence            89999999887644  10                 11135889999999999997766632210000     02356766


Q ss_pred             HHhcCCCcEEEEeec
Q 024008          235 VLQPMGFQAISIVDN  249 (274)
Q Consensus       235 ~~~~~Gf~~~~~~~~  249 (274)
                      .+-+.++ +..+...
T Consensus       200 ~ll~~~~-i~aVI~L  213 (311)
T PF02384_consen  200 YLLENGY-IEAVISL  213 (311)
T ss_dssp             HHHHHEE-EEEEEE-
T ss_pred             HHHhhch-hhEEeec
Confidence            6665443 4444443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.42  E-value=1.7e-06  Score=67.68  Aligned_cols=120  Identities=20%  Similarity=0.261  Sum_probs=87.8

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhh
Q 024008           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~  151 (274)
                      +.+|.-.|..+.          .+.+++...  ...+++|||+|+|+|..++..++.|+ .|+..|+.|......+-|..
T Consensus        54 Ppfwa~~WagG~----------~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~  123 (218)
T COG3897          54 PPFWAFAWAGGQ----------VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAA  123 (218)
T ss_pred             chHHHHHHhhhH----------HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchh
Confidence            447766665432          244444433  34568999999999999999999887 89999999998888888888


Q ss_pred             cCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       152 ~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      .+++  .+.|...|...  .+..||++++..++..-  +.-.+++. +...++..|..++
T Consensus       124 angv--~i~~~~~d~~g--~~~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         124 ANGV--SILFTHADLIG--SPPAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             hccc--eeEEeeccccC--CCcceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence            8874  48888888875  55679999999887653  34456666 5555555555444

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.42  E-value=8.5e-07  Score=74.26  Aligned_cols=104  Identities=20%  Similarity=0.288  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCcchhH-HHhhC---CCCeEEEEeCChHHHHHHHHHhh-cCCCCcceEEEEcccCCCC-CCCCeeEEEecc
Q 024008          109 KGRALVPGCGTGYDV-VAMAS---PERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTWC-PTELFDLIFDYT  182 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~-~~l~~---~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~  182 (274)
                      +.+|+=||||.=-++ +.+++   .+..++++|+++++++.+++.+. ..+++.+++|+.+|..... .-..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            469999999975544 55554   46789999999999999999887 4556788999999997643 336899999766


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ... ++.+...+++.++.+.++||..+++-.
T Consensus       201 lVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  201 LVG-MDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             T-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             hcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence            554 344456789999999999999888864

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.42  E-value=9.8e-07  Score=77.58  Aligned_cols=97  Identities=12%  Similarity=0.017  Sum_probs=79.2

Q ss_pred             CeEEEEcCCcchhHHHhhCC--CC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024008          110 GRALVPGCGTGYDVVAMASP--ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~--~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~  184 (274)
                      .+|||+.||+|..++.++..  |+ +|+++|+++.+++.+++|+..++.. ++++...|+.....  ..+||+|+... +
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            58999999999999998874  54 8999999999999999999887653 58899999887432  35799998654 4


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      . .+    ..+++.+.+.+++||+++++.
T Consensus       124 G-s~----~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       124 G-TP----APFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             C-Cc----HHHHHHHHHhcccCCEEEEEe
Confidence            3 21    357888999999999999874

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=98.38  E-value=1.4e-05  Score=66.98  Aligned_cols=145  Identities=22%  Similarity=0.236  Sum_probs=95.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh---hcCC-------------------------------
Q 024008          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS---SSLP-------------------------------  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~---~~~~-------------------------------  154 (274)
                      .-+||-.|||.|+++..|+..|..+-|=|+|--|+--..-.+   ...+                               
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p  230 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP  230 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence            358999999999999999998887777777654442211111   1111                               


Q ss_pred             -----CCcceEEEEcccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE-----EEccCCCCC
Q 024008          155 -----NAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-----LMFPISDHV  220 (274)
Q Consensus       155 -----~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~-----~~~~~~~~~  220 (274)
                           .........||+.+..+    .+.||+|+....+.-.  .+.-.+++.+.++|+|||+++=     ..|......
T Consensus       231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~  308 (369)
T KOG2798|consen  231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV  308 (369)
T ss_pred             cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC
Confidence                 11123335577766222    2469999987655433  4667899999999999999763     222221111


Q ss_pred             C-CCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024008          221 G-GPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       221 ~-~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~  255 (274)
                      . .....++.+++..+++..||++++-...+..+..
T Consensus       309 ~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~  344 (369)
T KOG2798|consen  309 ENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGT  344 (369)
T ss_pred             cccccccccHHHHHHHHHhcCcEEEEeeeeecccCC
Confidence            1 1233478999999999999999888866655554

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.36  E-value=1.5e-05  Score=63.73  Aligned_cols=123  Identities=13%  Similarity=0.016  Sum_probs=95.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024008          109 KGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~  185 (274)
                      +.++.||||-.+++..++.+.+  -.+++.|+++..+..|.+++...++.++++...+|... ..+...+|+|+..++=.
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG   96 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG   96 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence            3459999999999999999844  48999999999999999999999999999999999987 44455899998554433


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                          .....++++-.+.|+.=-++++.-  .          ....++++++...+|+++.-.
T Consensus        97 ----~lI~~ILee~~~~l~~~~rlILQP--n----------~~~~~LR~~L~~~~~~I~~E~  142 (226)
T COG2384          97 ----TLIREILEEGKEKLKGVERLILQP--N----------IHTYELREWLSANSYEIKAET  142 (226)
T ss_pred             ----HHHHHHHHHhhhhhcCcceEEECC--C----------CCHHHHHHHHHhCCceeeeee
Confidence                455667777777776433444421  1          157889999999999876543

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=1.8e-05  Score=69.51  Aligned_cols=133  Identities=21%  Similarity=0.217  Sum_probs=96.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCC-CCeeE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~-~~fD~  177 (274)
                      ..++.+|||+.++.|.=+..++.    .+..|+++|.++..+...++++...|..+ +.....|...   ..+. ++||.
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcCcE
Confidence            56678999999999988877776    35678999999999999999999998754 7777777654   2222 35999


Q ss_pred             EEeccccccc-------------ChhH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024008          178 IFDYTFFCAI-------------EPEM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       178 v~~~~~~~~~-------------~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      |+.-......             .+.+       -..++....+.|||||.|+.++.+....       -..+.+..+++
T Consensus       233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e-------ENE~vV~~~L~  305 (355)
T COG0144         233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE-------ENEEVVERFLE  305 (355)
T ss_pred             EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh-------cCHHHHHHHHH
Confidence            9975332211             1111       2578899999999999999888766422       13556666676


Q ss_pred             cC-CCcEEEE
Q 024008          238 PM-GFQAISI  246 (274)
Q Consensus       238 ~~-Gf~~~~~  246 (274)
                      +. +|+.+.+
T Consensus       306 ~~~~~~~~~~  315 (355)
T COG0144         306 RHPDFELEPV  315 (355)
T ss_pred             hCCCceeecc
Confidence            65 5666555

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.34  E-value=9.8e-07  Score=73.01  Aligned_cols=114  Identities=18%  Similarity=0.306  Sum_probs=90.1

Q ss_pred             ccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCC
Q 024008           94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPT  172 (274)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~  172 (274)
                      +-+...+++..... +..++|+|||-|..+..  .+...++|.|++...+..+++.-       -.....+|+.+ +...
T Consensus        32 ~Wp~v~qfl~~~~~-gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~~-------~~~~~~ad~l~~p~~~  101 (293)
T KOG1331|consen   32 PWPMVRQFLDSQPT-GSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRSG-------GDNVCRADALKLPFRE  101 (293)
T ss_pred             ccHHHHHHHhccCC-cceeeecccCCcccCcC--CCcceeeecchhhhhccccccCC-------CceeehhhhhcCCCCC
Confidence            35567777775433 67999999999977632  26678999999998888776543       12678889888 6677


Q ss_pred             CCeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          173 ELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      ..||.+++..++||+.. ..+..+++++.++++|||..++..++..
T Consensus       102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~  147 (293)
T KOG1331|consen  102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE  147 (293)
T ss_pred             CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence            89999999999999864 4567899999999999999988887654

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.33  E-value=2e-06  Score=73.06  Aligned_cols=72  Identities=15%  Similarity=0.115  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCC--CeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTE--LFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~--~fD~v  178 (274)
                      .++..++|++||.|..+..+++.   ..+|+|+|.++.+++.|++++..   .+++.++.+|+.+.   .+.+  ++|.|
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgI   94 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGI   94 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence            45679999999999999999883   47999999999999999998755   26899999999872   2222  79999


Q ss_pred             Eec
Q 024008          179 FDY  181 (274)
Q Consensus       179 ~~~  181 (274)
                      ++.
T Consensus        95 l~D   97 (296)
T PRK00050         95 LLD   97 (296)
T ss_pred             EEC
Confidence            874

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.29  E-value=1.4e-06  Score=67.65  Aligned_cols=101  Identities=19%  Similarity=0.129  Sum_probs=78.8

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024008          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  188 (274)
                      .+.+.|+|+|+|.++...++..-+|++++.+|.....|.+|+...+. ++++++.+|+..... +..|+|+|-..=-.+-
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi  110 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALI  110 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHHHHhhHHhh
Confidence            47899999999999998888867999999999999999999866654 679999999987544 5679998743321111


Q ss_pred             hhHHHHHHHHHHhcccCCcEEEE
Q 024008          189 PEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       189 ~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      .+....++..+.+.|+.++.++-
T Consensus       111 ~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         111 EEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             cccccHHHHHHHHHhhcCCcccc
Confidence            12334677888888999988763

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.29  E-value=6.9e-06  Score=66.25  Aligned_cols=114  Identities=22%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             cHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhh-------cCCC-CcceEEEE
Q 024008           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSS-------SLPN-AKFVSFLK  163 (274)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~-------~~~~-~~~v~~~~  163 (274)
                      ...+..+++.... ++...+|+|||.|....+.+. .++ +.+|||+.+...+.|+....       ..+. ..++++..
T Consensus        28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~  107 (205)
T PF08123_consen   28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH  107 (205)
T ss_dssp             HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred             HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence            3445566665544 457999999999999887766 455 69999999998888765332       2222 35688899


Q ss_pred             cccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          164 ADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       164 ~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      +|+.+...    -...|+|++++..  ++++. ...+.++...||+|.+++.
T Consensus       108 gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  108 GDFLDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKPGARIIS  156 (205)
T ss_dssp             S-TTTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-TT-EEEE
T ss_pred             cCccccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCCCCEEEE
Confidence            99876211    1357999998763  34343 4455777788999988765

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.29  E-value=1.4e-05  Score=74.05  Aligned_cols=78  Identities=18%  Similarity=0.309  Sum_probs=57.1

Q ss_pred             CCeEEEEcCCcchhHHHhhC--C--------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----C--CCC
Q 024008          109 KGRALVPGCGTGYDVVAMAS--P--------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W--CPT  172 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~--------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~--~~~  172 (274)
                      ..+|||.|||+|.++..++.  .        ...++|+|+++.++..++.++...+. ..+.+...|...    .  ...
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence            45899999999999987765  1        14799999999999999998765531 234555555432    1  112


Q ss_pred             CCeeEEEeccccccc
Q 024008          173 ELFDLIFDYTFFCAI  187 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~  187 (274)
                      ++||+|+++.++..+
T Consensus       111 ~~fD~IIgNPPy~~~  125 (524)
T TIGR02987       111 DLFDIVITNPPYGRL  125 (524)
T ss_pred             CcccEEEeCCCcccc
Confidence            579999999988753

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.28  E-value=3.2e-06  Score=67.15  Aligned_cols=117  Identities=21%  Similarity=0.268  Sum_probs=74.4

Q ss_pred             CCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCC--CCC
Q 024008          109 KGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCP--TEL  174 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------~~~--~~~  174 (274)
                      +.+|||+||++|.++..+.+.+   .+|+|+|+.+.         ...   ..+.++.+|+.+         ...  .++
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL---QNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc---cceeeeecccchhhHHHhhhhhccccccC
Confidence            4799999999999999999976   69999999876         110   235556666553         111  268


Q ss_pred             eeEEEeccccccc-----Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          175 FDLIFDYTFFCAI-----EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 fD~v~~~~~~~~~-----~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ||+|++-......     +.    ......+.-+.+.|+|||.+++-.+....         . .++...++. .|+.+.
T Consensus        92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~---------~-~~~~~~l~~-~F~~v~  160 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE---------I-EELIYLLKR-CFSKVK  160 (181)
T ss_dssp             ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT---------S-HHHHHHHHH-HHHHEE
T ss_pred             cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc---------H-HHHHHHHHh-CCeEEE
Confidence            9999987633221     11    22234455666779999998887765321         2 367676766 677766


Q ss_pred             Eee
Q 024008          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       161 ~~K  163 (181)
T PF01728_consen  161 IVK  163 (181)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.24  E-value=2.9e-05  Score=59.36  Aligned_cols=102  Identities=25%  Similarity=0.355  Sum_probs=70.5

Q ss_pred             EEEEcCCcchhH--HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CC-CC-CCeeEEEeccccc
Q 024008          112 ALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WC-PT-ELFDLIFDYTFFC  185 (274)
Q Consensus       112 vLDiG~G~G~~~--~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~-~~-~~fD~v~~~~~~~  185 (274)
                      ++|+|||+|...  ..+...+..++++|+++.++..++..... .....+.+...|...  .. .. ..||++......+
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            999999999965  33322335899999999999886555432 211116788888765  22 22 3799994444444


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      +..   ....+..+.+.++|+|.+++......
T Consensus       131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         131 LLP---PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             cCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            443   56788999999999999988776543

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=3.6e-05  Score=61.43  Aligned_cols=129  Identities=16%  Similarity=0.142  Sum_probs=87.4

Q ss_pred             HHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--
Q 024008           97 IIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--  169 (274)
Q Consensus        97 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  169 (274)
                      .+.++.+..  ..++..|+|+|+-.|.++..+++   .+..|+++|+.|-         ...   +++.++++|++..  
T Consensus        32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~---~~V~~iq~d~~~~~~   99 (205)
T COG0293          32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPI---PGVIFLQGDITDEDT   99 (205)
T ss_pred             HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccC---CCceEEeeeccCccH
Confidence            344444433  34568999999999999998887   3345999999773         111   3599999999872  


Q ss_pred             -------CCCCCeeEEEecccc--------ccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHH
Q 024008          170 -------CPTELFDLIFDYTFF--------CAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYE  233 (274)
Q Consensus       170 -------~~~~~fD~v~~~~~~--------~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                             ....++|+|++-..-        +|. .-.....+++-...+|+|||.+++-.|-..          ..+++.
T Consensus       100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~----------~~~~~l  169 (205)
T COG0293         100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE----------DFEDLL  169 (205)
T ss_pred             HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC----------CHHHHH
Confidence                   233457999975443        111 112235666778889999999998776443          456666


Q ss_pred             HHHhcCCCcEEEEee
Q 024008          234 EVLQPMGFQAISIVD  248 (274)
Q Consensus       234 ~~~~~~Gf~~~~~~~  248 (274)
                      +.++. .|..+.+..
T Consensus       170 ~~~~~-~F~~v~~~K  183 (205)
T COG0293         170 KALRR-LFRKVKIFK  183 (205)
T ss_pred             HHHHH-hhceeEEec
Confidence            66666 587777665

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=2.5e-06  Score=64.56  Aligned_cols=134  Identities=17%  Similarity=0.184  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCCcchh-HHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCC--cceEEEEcccCC---CCCCCCeeEEE
Q 024008          108 PKGRALVPGCGTGYD-VVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFT---WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~-~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~---~~~~~~fD~v~  179 (274)
                      .+.+|||+|.|--.+ ++.++.  +...|...|-+.+.+...++..-.+..+  .++..+.-+...   ....+.||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            357899999985444 444444  5679999999999998888776554211  233333333332   33456899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      +...+-.  ++....+++.+..+|+|.|..++....         ..-+.+.+.+.....||.++..+.+...
T Consensus       109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPR---------Rg~sL~kF~de~~~~gf~v~l~enyde~  170 (201)
T KOG3201|consen  109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPR---------RGQSLQKFLDEVGTVGFTVCLEENYDEA  170 (201)
T ss_pred             eccchhH--HHHHHHHHHHHHHHhCcccceeEecCc---------ccchHHHHHHHHHhceeEEEecccHhHH
Confidence            9877552  356788999999999999996665421         2237889999999999998776665533

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.19  E-value=5.9e-06  Score=69.89  Aligned_cols=79  Identities=19%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcc----cCC--CCCCCCeeEEEe
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKAD----FFT--WCPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d----~~~--~~~~~~fD~v~~  180 (274)
                      -++||||||....-..|..  .+++++|+|+++..++.|++++..+ ++..+|+++...    ++.  ..+.+.||+.+|
T Consensus       104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC  183 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC  183 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred             eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence            5899999999877544443  6899999999999999999999998 888899997653    333  223468999999


Q ss_pred             cccccccC
Q 024008          181 YTFFCAIE  188 (274)
Q Consensus       181 ~~~~~~~~  188 (274)
                      +..|+.-.
T Consensus       184 NPPFy~s~  191 (299)
T PF05971_consen  184 NPPFYSSQ  191 (299)
T ss_dssp             -----SS-
T ss_pred             CCccccCh
Confidence            99988754

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.17  E-value=2.2e-05  Score=69.84  Aligned_cols=107  Identities=15%  Similarity=0.233  Sum_probs=87.3

Q ss_pred             CCCC-eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024008          107 LPKG-RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~-~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~  183 (274)
                      .+.. ++|-+|||-..++..+.+.|. .|+.+|+|+-+++.........  ..-..+...|... .+++++||+|+..+.
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGt  123 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGT  123 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCc
Confidence            3344 999999999999999999887 7999999999998887766422  1457899999988 678899999999999


Q ss_pred             ccccChh--------HHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          184 FCAIEPE--------MRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       184 ~~~~~~~--------~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      ++++..+        .....+..+++++++||+.+.+.+.
T Consensus       124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen  124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence            9886322        2356789999999999998887764

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.16  E-value=1.5e-05  Score=67.20  Aligned_cols=99  Identities=17%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC----
Q 024008           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE----  173 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----  173 (274)
                      ..+++... .++..|||+|+|.|.++..|++.+.+++++|+++..++..++.....   ++++++.+|+.......    
T Consensus        20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~~~~~   96 (262)
T PF00398_consen   20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYDLLKN   96 (262)
T ss_dssp             HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGGHCSS
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHHhhcC
Confidence            33444333 35689999999999999999998899999999999999999987633   67999999999854333    


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccC
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP  205 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~  205 (274)
                      ....|+++..+ ++.    ..++.++...-+.
T Consensus        97 ~~~~vv~NlPy-~is----~~il~~ll~~~~~  123 (262)
T PF00398_consen   97 QPLLVVGNLPY-NIS----SPILRKLLELYRF  123 (262)
T ss_dssp             SEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred             CceEEEEEecc-cch----HHHHHHHhhcccc
Confidence            56677777665 343    3345555553333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.15  E-value=3.6e-05  Score=61.90  Aligned_cols=136  Identities=22%  Similarity=0.284  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~  179 (274)
                      .++.+||-+|+.+|.....++.   +...|+++|+++......-..+...   +|+--+..|+..+.    .-+.+|+|+
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI~  148 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVIF  148 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEEE
Confidence            4568999999999999877776   5679999999996665555444433   46877889988632    235899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +--.    .+++..-++......||+||.+++..-...-.....+-..-. +-.+.+++.||+..+....+
T Consensus       149 ~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~-~e~~~L~~~~~~~~e~i~Le  214 (229)
T PF01269_consen  149 QDVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFA-EEVKKLKEEGFKPLEQITLE  214 (229)
T ss_dssp             EE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHH-HHHHHHHCTTCEEEEEEE-T
T ss_pred             ecCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHH-HHHHHHHHcCCChheEeccC
Confidence            5322    235667788899999999999998764322211111211112 33455677799998776643

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.14  E-value=1.2e-05  Score=68.87  Aligned_cols=86  Identities=19%  Similarity=0.167  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~  185 (274)
                      .++.++||+||++|.++..+++.|++|++||..+- -    ..+..   .++|+....|.+...+ .+.+|+++|-.+..
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-~----~~L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~  281 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-A----QSLMD---TGQVEHLRADGFKFRPPRKNVDWLVCDMVEK  281 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-C----HhhhC---CCCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence            45689999999999999999999999999996542 1    11222   2579999999988655 67899999765522


Q ss_pred             ccChhHHHHHHHHHHhcccCC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPD  206 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~g  206 (274)
                            ...+.+.+.+++..|
T Consensus       282 ------P~rva~lm~~Wl~~g  296 (357)
T PRK11760        282 ------PARVAELMAQWLVNG  296 (357)
T ss_pred             ------HHHHHHHHHHHHhcC
Confidence                  235667777777665

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.13  E-value=1.7e-05  Score=62.01  Aligned_cols=143  Identities=12%  Similarity=0.074  Sum_probs=93.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC-CC--CeEEEEeCChHHH----HHHHHH-hhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS-PE--RYVVGLEISDIAI----KKAEEL-SSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~-~~--~~v~~iD~s~~~~----~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~fD~  177 (274)
                      ..++.+|+|+=.|.|.++..++. .+  ..|+++=..+...    +..+.+ +.......|++.+..+.....+..+.|+
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~  125 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL  125 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence            45678999999999999998887 22  2666654332211    101111 1111112356666677766557777888


Q ss_pred             EEeccccccc-----ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          178 IFDYTFFCAI-----EPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       178 v~~~~~~~~~-----~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ++.....+.+     ++.....+...+++.|||||.+++.++.....    .......++...+++..+.+||++.--.+
T Consensus       126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~  205 (238)
T COG4798         126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESE  205 (238)
T ss_pred             cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeeh
Confidence            8876555544     33556788899999999999999988755432    12223456889999999999998765444

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.11  E-value=5.6e-07  Score=70.81  Aligned_cols=149  Identities=18%  Similarity=0.164  Sum_probs=94.0

Q ss_pred             cHHHHHHHhcC----CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024008           95 APIIVHLHQSG----ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (274)
Q Consensus        95 ~~~~~~~~~~~----~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  170 (274)
                      ......++...    ...+.++||+|+|.|..+..++..--+|++.|.|..|....+..--.  +-..+++.+.|     
T Consensus        95 e~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~yn--Vl~~~ew~~t~-----  167 (288)
T KOG3987|consen   95 EEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYN--VLTEIEWLQTD-----  167 (288)
T ss_pred             HHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCc--eeeehhhhhcC-----
Confidence            34455555433    22347999999999999987766444799999999998887654311  00112222222     


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccC-CcEEEEEE---------ccCCCCCC---------CCCcccCHHH
Q 024008          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP-DGELITLM---------FPISDHVG---------GPPYKVSVSD  231 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~-gG~l~~~~---------~~~~~~~~---------~~~~~~~~~~  231 (274)
                        -+||+|.|.+++....  +.-++++.++.+|+| +|++++..         +++.....         |..+.-....
T Consensus       168 --~k~dli~clNlLDRc~--~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~  243 (288)
T KOG3987|consen  168 --VKLDLILCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVAR  243 (288)
T ss_pred             --ceeehHHHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHH
Confidence              3699999998887653  335788999999999 78876532         11111111         1122223456


Q ss_pred             HHHHHhcCCCcEEEEeecccccC
Q 024008          232 YEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      +.++++.+||.+......+.-..
T Consensus       244 ~~e~lr~~g~~veawTrlPYLCE  266 (288)
T KOG3987|consen  244 FMELLRNCGYRVEAWTRLPYLCE  266 (288)
T ss_pred             HHHHHHhcCchhhhhhcCCeecc
Confidence            67889999998766655444333

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.10  E-value=3.4e-05  Score=61.34  Aligned_cols=115  Identities=21%  Similarity=0.240  Sum_probs=84.0

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~  170 (274)
                      .+.+.++.+....++++||++|-|-|.....+.+ +..+=+.||..|+++...+.......  ++|-+..+-..+   ..
T Consensus        88 tpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L  165 (271)
T KOG1709|consen   88 TPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTL  165 (271)
T ss_pred             hHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccc
Confidence            3445555544456789999999999999888877 33466678999999999988765543  678888876555   56


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +++.||-|+-- ++.-.. ++...+.+.+.++|||+|++-...
T Consensus       166 ~d~~FDGI~yD-Ty~e~y-Edl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  166 PDKHFDGIYYD-TYSELY-EDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             cccCcceeEee-chhhHH-HHHHHHHHHHhhhcCCCceEEEec
Confidence            77889999842 221111 566788899999999999876544

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.07  E-value=0.00034  Score=57.11  Aligned_cols=152  Identities=14%  Similarity=0.120  Sum_probs=87.8

Q ss_pred             HhcCCCCCCeEEEEcCCcchh-HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCeeE
Q 024008          102 HQSGALPKGRALVPGCGTGYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDL  177 (274)
Q Consensus       102 ~~~~~~~~~~vLDiG~G~G~~-~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~  177 (274)
                      .+...+.+++||-+|=..-.. +..+.....+|+.+|+++..++..++...+.++.  ++.+..|+..+.|.   ++||+
T Consensus        38 ~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~  115 (243)
T PF01861_consen   38 AERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDV  115 (243)
T ss_dssp             HHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSE
T ss_pred             HhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCE
Confidence            344457789999998554322 2233346679999999999999999999888764  99999999996654   79999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCcc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRK  257 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~  257 (274)
                      +++..+.-   .+-..-++.+....|+.-|-.....++....     ......++++.+.+.||.+..+...--.+.++.
T Consensus       116 f~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-----s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ga~  187 (243)
T PF01861_consen  116 FFTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-----SPDKWLEVQRFLLEMGLVITDIIPDFNRYEGAE  187 (243)
T ss_dssp             EEE---SS---HHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHHHHHHHHHHHTS--EEEEEEEEEEEB---S
T ss_pred             EEeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEEEecCcC-----cHHHHHHHHHHHHHCCcCHHHHHhhhcccccch
Confidence            99876643   2566788999999998877433333333211     011235789999999999999988777777655


Q ss_pred             chhHHH
Q 024008          258 GREKLG  263 (274)
Q Consensus       258 ~~~~~~  263 (274)
                      .-+...
T Consensus       188 ~i~~~~  193 (243)
T PF01861_consen  188 IIGNTR  193 (243)
T ss_dssp             -GGGSH
T ss_pred             hhcccc
Confidence            444333

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.05  E-value=3.1e-05  Score=63.44  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=90.1

Q ss_pred             HHHHHHHhcC---CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024008           96 PIIVHLHQSG---ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (274)
Q Consensus        96 ~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  170 (274)
                      +.+..+....   ..++.+|+|||||.--++..+..  ++..++|+|+++.+++.........+  ...++...|.....
T Consensus        90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~  167 (251)
T PF07091_consen   90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDP  167 (251)
T ss_dssp             GGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH
T ss_pred             hhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccC
Confidence            3345544433   22368999999999988886665  56799999999999999998877766  35778888998877


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--CCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--PPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +....|+.+..=+++.++.......+ ++.+.+  +...+++.|+.....+.  .+...-..++.+++...||.+.+..
T Consensus       168 ~~~~~DlaLllK~lp~le~q~~g~g~-~ll~~~--~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~  243 (251)
T PF07091_consen  168 PKEPADLALLLKTLPCLERQRRGAGL-ELLDAL--RSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLT  243 (251)
T ss_dssp             TTSEESEEEEET-HHHHHHHSTTHHH-HHHHHS--CESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred             CCCCcchhhHHHHHHHHHHHhcchHH-HHHHHh--CCCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeee
Confidence            77889999987776665322221222 222222  34455556655433221  1222346778888888888855443

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.04  E-value=2.7e-06  Score=61.34  Aligned_cols=97  Identities=21%  Similarity=0.149  Sum_probs=42.7

Q ss_pred             EEEcCCcchhHHHhhC---CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024008          113 LVPGCGTGYDVVAMAS---PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (274)
Q Consensus       113 LDiG~G~G~~~~~l~~---~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~~  184 (274)
                      ||+|+..|..+..+++   ..  .+++++|..+. .+.+++..+..+...+++++.++..+.   .+..++|+++.-..-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH   79 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence            6999999999988876   23  37999999985 333444444444556899999998762   224789999954321


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                         ..+.....+..+.+.|+|||++++-+
T Consensus        80 ---~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   80 ---SYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             ---CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence               11345567889999999999988743

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=0.00017  Score=56.94  Aligned_cols=135  Identities=20%  Similarity=0.230  Sum_probs=93.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~  180 (274)
                      .++.+||-+|+.+|.....++.  ....++++|+++......-..+...   +|+--+.+|+..+.    .-+..|+|+.
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~  151 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVIYQ  151 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEEEE
Confidence            4568999999999999888877  3458999999998877766665544   46777888887633    2356899984


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      --    ..+++..-+...+...|++||.+++..-...-..+..+-..-.+++. .+++.||+++++...
T Consensus       152 DV----AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~-kL~~~~f~i~e~~~L  215 (231)
T COG1889         152 DV----AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE-KLEEGGFEILEVVDL  215 (231)
T ss_pred             ec----CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH-HHHhcCceeeEEecc
Confidence            21    23456677888999999999987776544433333333333344444 455568998877664

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=6.4e-05  Score=56.16  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=89.5

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024008           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  170 (274)
                      ...+.++..+..+ ..+.++.+|+|+|.|....+.++.| ...+|+|++|-.+..++-+.-..+...+..|..-|+.+..
T Consensus        56 AtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d  135 (199)
T KOG4058|consen   56 ATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD  135 (199)
T ss_pred             ccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence            3455566666555 3445899999999999999999888 4899999999999999998888888888999999998844


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      . +.|..|+...+     +..+..+..++..-+..+..++..-|+..
T Consensus       136 l-~dy~~vviFga-----es~m~dLe~KL~~E~p~nt~vvacRFPLP  176 (199)
T KOG4058|consen  136 L-RDYRNVVIFGA-----ESVMPDLEDKLRTELPANTRVVACRFPLP  176 (199)
T ss_pred             c-cccceEEEeeh-----HHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence            3 23444443332     23445566788888888999988877653

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.93  E-value=0.00025  Score=61.76  Aligned_cols=163  Identities=13%  Similarity=0.135  Sum_probs=93.5

Q ss_pred             CCeEEEEcCCcchhHHHhhC------------CC------CeEEEEeCChHHHHHHHHHhhcC------CCCcceEEEEc
Q 024008          109 KGRALVPGCGTGYDVVAMAS------------PE------RYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKA  164 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~------------~~------~~v~~iD~s~~~~~~a~~~~~~~------~~~~~v~~~~~  164 (274)
                      .-+|+|+||.+|.+++.+..            .+      .+|+--|+-..-....-+.++..      ...--+.-+.+
T Consensus        17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg   96 (334)
T PF03492_consen   17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG   96 (334)
T ss_dssp             EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred             ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence            36999999999999876553            12      47888897544333332222221      00011334567


Q ss_pred             ccCC-CCCCCCeeEEEecccccccCh------h-------------------------------HHHHHHHHHHhcccCC
Q 024008          165 DFFT-WCPTELFDLIFDYTFFCAIEP------E-------------------------------MRAAWAQKIKDFLKPD  206 (274)
Q Consensus       165 d~~~-~~~~~~fD~v~~~~~~~~~~~------~-------------------------------~~~~~l~~l~~~L~~g  206 (274)
                      .+.. .+|.++.|++++..++|+++.      +                               ++..+++.=.+-|+||
T Consensus        97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G  176 (334)
T PF03492_consen   97 SFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG  176 (334)
T ss_dssp             -TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             hhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            7776 889999999999999988631      0                               1234555556678999


Q ss_pred             cEEEEEEccCCCCCC----------------------------------CCCcccCHHHHHHHHhcCC-CcEEEEeeccc
Q 024008          207 GELITLMFPISDHVG----------------------------------GPPYKVSVSDYEEVLQPMG-FQAISIVDNKL  251 (274)
Q Consensus       207 G~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~G-f~~~~~~~~~~  251 (274)
                      |++++...+......                                  -|.|..+.+|+.+.++..| |++..++....
T Consensus       177 G~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~~  256 (334)
T PF03492_consen  177 GRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFEQ  256 (334)
T ss_dssp             EEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEEE
T ss_pred             cEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEee
Confidence            999998876654200                                  1234468999999999988 88877776553


Q ss_pred             ccCC-----------ccchhHHHHhhhhhcc
Q 024008          252 AIGP-----------RKGREKLGRWKRSVRH  271 (274)
Q Consensus       252 ~~~~-----------~~~~~~~~~~~~~~~~  271 (274)
                      ....           ....+.+..+.|+...
T Consensus       257 ~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e  287 (334)
T PF03492_consen  257 PWWSVPDDESWKEDAKEYARNVANYIRAVFE  287 (334)
T ss_dssp             ETCCTCTTT-STTTHHCHHHHHHHHHHHHHH
T ss_pred             cccccchhhhcccchhhhHHHHHHhHHHHHH
Confidence            2211           1245566677776543

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.92  E-value=0.00031  Score=61.80  Aligned_cols=164  Identities=16%  Similarity=0.182  Sum_probs=101.5

Q ss_pred             CCeEEEEcCCcchhHHHhhC-----------------CCCeEEEEeCChHHHHHHHHHhhcCC------------CCcc-
Q 024008          109 KGRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSLP------------NAKF-  158 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-----------------~~~~v~~iD~s~~~~~~a~~~~~~~~------------~~~~-  158 (274)
                      ..+|+|+|||+|.+++.+..                 +..++..-|+...-.+..-+.++...            ...+ 
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            46899999999988755432                 23577777775444433333332100            0011 


Q ss_pred             --eEEEEcccCC-CCCCCCeeEEEecccccccCh--h----------------------------------HHHHHHHHH
Q 024008          159 --VSFLKADFFT-WCPTELFDLIFDYTFFCAIEP--E----------------------------------MRAAWAQKI  199 (274)
Q Consensus       159 --v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~--~----------------------------------~~~~~l~~l  199 (274)
                        +.-+.+.+.. .+|.++.|++++...+|+++.  +                                  ++..+++.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              1223355655 788999999999999998742  1                                  123455555


Q ss_pred             HhcccCCcEEEEEEccCCCC--C----------------------------------CCCCcccCHHHHHHHHhcCC-Cc
Q 024008          200 KDFLKPDGELITLMFPISDH--V----------------------------------GGPPYKVSVSDYEEVLQPMG-FQ  242 (274)
Q Consensus       200 ~~~L~~gG~l~~~~~~~~~~--~----------------------------------~~~~~~~~~~~~~~~~~~~G-f~  242 (274)
                      .+-|.|||.+++...+....  .                                  .-|.|..+.+|+.+.++..| |.
T Consensus       224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~  303 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA  303 (386)
T ss_pred             HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence            66789999999987665311  0                                  01234469999999999998 87


Q ss_pred             EEEEeecccccCCcc----c----hhHHHHhhhhhccc
Q 024008          243 AISIVDNKLAIGPRK----G----REKLGRWKRSVRHS  272 (274)
Q Consensus       243 ~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~  272 (274)
                      +..++..+.......    +    -..++.+.|+...+
T Consensus       304 I~~le~~~~~~~~~~~~~~d~~~~g~~~a~~~RA~~E~  341 (386)
T PLN02668        304 IDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAGV  341 (386)
T ss_pred             eeeeEEeeccCcccccCcccHHHHHHHHHHHHHHHHHH
Confidence            777776443211100    1    23467788877654

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.90  E-value=8.4e-05  Score=55.72  Aligned_cols=112  Identities=16%  Similarity=0.151  Sum_probs=72.9

Q ss_pred             eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecccccccCh---------hHHHHHHHHH
Q 024008          132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEP---------EMRAAWAQKI  199 (274)
Q Consensus       132 ~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~~~---------~~~~~~l~~l  199 (274)
                      +|+|+|+-+++++..++++...++.++++++..+-..   ..+.+++|+++.+  +.++|.         +..-..++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            6899999999999999999999887889999987665   2333589999965  444443         2345778999


Q ss_pred             HhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh---cCCCcEEEEeecc
Q 024008          200 KDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ---PMGFQAISIVDNK  250 (274)
Q Consensus       200 ~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Gf~~~~~~~~~  250 (274)
                      .++|+|||++.++.+..-....     -..+.+.++++   ...|.+.......
T Consensus        79 l~lL~~gG~i~iv~Y~GH~gG~-----eE~~av~~~~~~L~~~~~~V~~~~~~N  127 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHPGGK-----EESEAVEEFLASLDQKEFNVLKYQFIN  127 (140)
T ss_dssp             HHHEEEEEEEEEEE--STCHHH-----HHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred             HHhhccCCEEEEEEeCCCCCCH-----HHHHHHHHHHHhCCcceEEEEEEEccC
Confidence            9999999999999876432100     12333444444   4567776665543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.85  E-value=5.3e-05  Score=57.54  Aligned_cols=57  Identities=21%  Similarity=0.062  Sum_probs=48.1

Q ss_pred             eEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          111 RALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .++|+|||.|..+..+++.  +.+++++|+++.+++.++++...++.. ++.++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            4899999999999998874  447999999999999999998877653 58888877764

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.84  E-value=0.00016  Score=61.53  Aligned_cols=133  Identities=21%  Similarity=0.252  Sum_probs=95.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~  179 (274)
                      ..++.+|||+.++.|.=+..++.   ....+++.|+++..+...+.+....|.. ++.....|....   .....||.|+
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vl  161 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVL  161 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhh
Confidence            56678999999999999888877   3469999999999999999999988764 577777777663   2334699999


Q ss_pred             eccccccc-----ChhH---------------HHHHHHHHHhcc----cCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024008          180 DYTFFCAI-----EPEM---------------RAAWAQKIKDFL----KPDGELITLMFPISDHVGGPPYKVSVSDYEEV  235 (274)
Q Consensus       180 ~~~~~~~~-----~~~~---------------~~~~l~~l~~~L----~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      .-......     .++.               -..+++...+.+    +|||+++....+....       -..+.+...
T Consensus       162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-------ENE~vV~~f  234 (283)
T PF01189_consen  162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-------ENEEVVEKF  234 (283)
T ss_dssp             EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-------GTHHHHHHH
T ss_pred             cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-------HHHHHHHHH
Confidence            74332111     1111               157889999999    9999999888655322       145566667


Q ss_pred             HhcC-CCcEEEE
Q 024008          236 LQPM-GFQAISI  246 (274)
Q Consensus       236 ~~~~-Gf~~~~~  246 (274)
                      ++.+ .|+++.+
T Consensus       235 l~~~~~~~l~~~  246 (283)
T PF01189_consen  235 LKRHPDFELVPI  246 (283)
T ss_dssp             HHHSTSEEEECC
T ss_pred             HHhCCCcEEEec
Confidence            7775 4555443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.00011  Score=65.66  Aligned_cols=105  Identities=20%  Similarity=0.174  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---C---CCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---T---ELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~---~~fD~v~~~  181 (274)
                      .+..+||+-||||..+..+++.-.+|+|||+++++++.|+.++..++.+ |.+|+++-..+..+   .   ..-++|...
T Consensus       383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~ii  461 (534)
T KOG2187|consen  383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAII  461 (534)
T ss_pred             CCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEEE
Confidence            3468999999999999999999899999999999999999999999885 69999995544221   1   133433321


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      ..-.   ...-..++..+.+.-.+--.+++++...
T Consensus       462 DPpR---~Glh~~~ik~l~~~~~~~rlvyvSCn~~  493 (534)
T KOG2187|consen  462 DPPR---KGLHMKVIKALRAYKNPRRLVYVSCNPH  493 (534)
T ss_pred             CCCc---ccccHHHHHHHHhccCccceEEEEcCHH
Confidence            1111   0111356666766666777787777443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.66  E-value=0.00036  Score=55.11  Aligned_cols=103  Identities=20%  Similarity=0.285  Sum_probs=65.8

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC------CCcceEEEEcccCCCCCCCCeeEEEec
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~fD~v~~~  181 (274)
                      -.+.|||||-|.+++.|+.  +..-+.|.|+--.+.+..++++....      .-.++.....+.....|. -|.--...
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn-~f~kgqLs  140 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN-FFEKGQLS  140 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc-hhhhcccc
Confidence            4689999999999999988  66689999988777777776654432      224566676666653321 11111111


Q ss_pred             ccccccChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024008          182 TFFCAIEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~-----------~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      -.+..++++..           ..++.+..-+|++||.++...
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            11111222221           457788889999999998865

>PRK10742 putative methyltransferase; Provisional

Probab=97.58  E-value=0.00029  Score=57.96  Aligned_cols=77  Identities=16%  Similarity=0.054  Sum_probs=63.8

Q ss_pred             eEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC------C--CCcceEEEEcccCCCC--CCCCeeEEEe
Q 024008          111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL------P--NAKFVSFLKADFFTWC--PTELFDLIFD  180 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------~--~~~~v~~~~~d~~~~~--~~~~fD~v~~  180 (274)
                      +|||+-+|+|..++.++..|++|+++|-++......++++...      +  ...+++++.+|.....  ....||+|+.
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl  170 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL  170 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence            8999999999999999999999999999999999988887763      1  1256889999988732  2347999998


Q ss_pred             ccccccc
Q 024008          181 YTFFCAI  187 (274)
Q Consensus       181 ~~~~~~~  187 (274)
                      -..|.+-
T Consensus       171 DPMfp~~  177 (250)
T PRK10742        171 DPMFPHK  177 (250)
T ss_pred             CCCCCCC
Confidence            8887763

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.56  E-value=0.0013  Score=55.29  Aligned_cols=73  Identities=19%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCee
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD  176 (274)
                      ..+++..+|.--|.|+.+..+++.   ..+++|+|.++.+++.|++.....+  +++.++++++.+.      ...+++|
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i~~vD   98 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGIGKVD   98 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCCCcee
Confidence            456689999999999999999883   3579999999999999999987754  6899999887651      1234677


Q ss_pred             EEEe
Q 024008          177 LIFD  180 (274)
Q Consensus       177 ~v~~  180 (274)
                      .|+.
T Consensus        99 GiL~  102 (314)
T COG0275          99 GILL  102 (314)
T ss_pred             EEEE
Confidence            7764

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.53  E-value=0.00017  Score=63.17  Aligned_cols=71  Identities=13%  Similarity=0.036  Sum_probs=58.2

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEe
Q 024008          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~  180 (274)
                      -.|||||+|||.+++..++.|+ .|+++|.-..+.+.|++....+|++++++++..--.+  ..+..+.|+++.
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~  141 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR  141 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence            3789999999999999988877 8999999999999999999999999999998765554  222234566553

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=97.48  E-value=0.007  Score=50.88  Aligned_cols=136  Identities=15%  Similarity=0.142  Sum_probs=94.1

Q ss_pred             CeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCC-C--------CCCCCeeE
Q 024008          110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFT-W--------CPTELFDL  177 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~--------~~~~~fD~  177 (274)
                      ..|+.+|||-=.-...+..+ +.+++=+|. |++++.-++.+...+.  ..+..++..|+.. +        ...+.--+
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl  161 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA  161 (260)
T ss_pred             cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence            57999999875555555433 345655554 5666666666654321  3578889999863 1        11234567


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------CCCCCcccCHHHHHHHHhcC
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------VGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~  239 (274)
                      +++-+++.|++++....++..+.+...||+.+++-..+....                  .....+.++..++.++|..+
T Consensus       162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (260)
T TIGR00027       162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAER  241 (260)
T ss_pred             eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHC
Confidence            888899999999999999999999988999888755433110                  01123456889999999999


Q ss_pred             CCcEEEE
Q 024008          240 GFQAISI  246 (274)
Q Consensus       240 Gf~~~~~  246 (274)
                      ||+....
T Consensus       242 Gw~~~~~  248 (260)
T TIGR00027       242 GWRASEH  248 (260)
T ss_pred             CCeeecC
Confidence            9998665

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.42  E-value=0.00099  Score=56.89  Aligned_cols=73  Identities=21%  Similarity=0.179  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD~v  178 (274)
                      .+++.++|.=+|-|..+..+++  +..+|+|+|.++.+++.+++++...  ..++.++.+++.+.      ...+++|.|
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~vDgI   96 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTKIDGI   96 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCcccEE
Confidence            4567999999999999999887  3479999999999999999987654  36899999998762      123568888


Q ss_pred             Eec
Q 024008          179 FDY  181 (274)
Q Consensus       179 ~~~  181 (274)
                      ++.
T Consensus        97 l~D   99 (305)
T TIGR00006        97 LVD   99 (305)
T ss_pred             EEe
Confidence            864

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.37  E-value=0.00039  Score=59.40  Aligned_cols=110  Identities=17%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v  178 (274)
                      ...+.+|||+|.|.|.-+.++-.  +.. .++.++.|+..-+..-........ ....+...|+..    +.....|+++
T Consensus       111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp~ad~ytl~  189 (484)
T COG5459         111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLPAADLYTLA  189 (484)
T ss_pred             CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCCccceeehh
Confidence            34567899999999988776655  333 677888888655444443322211 223333344432    3444567777


Q ss_pred             Eeccccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          179 FDYTFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       179 ~~~~~~~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      +..+-+-+. .+......++++..++.|||.+++++.+.
T Consensus       190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt  228 (484)
T COG5459         190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT  228 (484)
T ss_pred             hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            765433222 22344568999999999999999998654

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.34  E-value=0.00057  Score=60.40  Aligned_cols=100  Identities=18%  Similarity=0.050  Sum_probs=74.8

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCC--CCCCeeEEEecc
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC--PTELFDLIFDYT  182 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~--~~~~fD~v~~~~  182 (274)
                      +.+|||.=+|+|.=++..+.  .+ .+|++-|+|+++++..++|+..+++.+ ++++...|+....  ....||+|=. .
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-D  128 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-D  128 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-C
Confidence            45899999999988876665  34 489999999999999999999998877 6888899988754  5788999972 1


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .|     .....+++...+.++.||.+.++.-
T Consensus       129 Pf-----GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  129 PF-----GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             -S-----S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CC-----CCccHhHHHHHHHhhcCCEEEEecc
Confidence            22     2335688999999999999998763

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.32  E-value=0.0031  Score=53.54  Aligned_cols=132  Identities=14%  Similarity=0.021  Sum_probs=84.0

Q ss_pred             eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEecccccc
Q 024008          111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCA  186 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~~~~~~  186 (274)
                      +++|+-||.|.....+...|+ .+.++|+++.+++..+.+.+..       ++.+|+.+...   ...+|+++.......
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gpPCq~   74 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFPCQP   74 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCCCChh
Confidence            689999999999999988888 5788999999999998887432       45667766332   357999999877654


Q ss_pred             cCh--------hHHHHHHH---HHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          187 IEP--------EMRAAWAQ---KIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       187 ~~~--------~~~~~~l~---~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      ++.        +.+..++.   ++.+.++|.  +++.+........  ........+.+.|++.||.+....-....+
T Consensus        75 fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~--~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~  148 (275)
T cd00315          75 FSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTH--DNGNTLKVILNTLEELGYNVYWKLLNASDY  148 (275)
T ss_pred             hhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhcc--CchHHHHHHHHHHHhCCcEEEEEEEEHHHc
Confidence            422        11222232   333334444  4444433221110  111246788889999999876555444333

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.31  E-value=0.00021  Score=53.92  Aligned_cols=80  Identities=15%  Similarity=0.149  Sum_probs=58.1

Q ss_pred             CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------C--CCCCcc------cCHHH
Q 024008          169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------V--GGPPYK------VSVSD  231 (274)
Q Consensus       169 ~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---------~--~~~~~~------~~~~~  231 (274)
                      .+.+++.|+|++.++++|+..+....+++.+++.|+|||++-+........         .  .++..+      .+-..
T Consensus        42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~  121 (185)
T COG4627          42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRM  121 (185)
T ss_pred             cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHH
Confidence            566789999999999999988888899999999999999999877543211         1  122211      25566


Q ss_pred             HHHHHhcCCCcEEEEee
Q 024008          232 YEEVLQPMGFQAISIVD  248 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~  248 (274)
                      +...+.++||.+.-...
T Consensus       122 m~n~~m~~~~~~kl~e~  138 (185)
T COG4627         122 MFNGFMDAGFVVKLLEY  138 (185)
T ss_pred             HHHHHHhhhheehhhhH
Confidence            66777777877654443

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.27  E-value=0.0034  Score=49.07  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=77.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---------CCCCC
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---------WCPTE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~---------~~~~~  173 (274)
                      .++.+|||+||..|.++....+   +...|.|||+-.-        .+..|    ++++.+ |+.+         ..|..
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~G----a~~i~~~dvtdp~~~~ki~e~lp~r  135 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEG----ATIIQGNDVTDPETYRKIFEALPNR  135 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCC----cccccccccCCHHHHHHHHHhCCCC
Confidence            4578999999999999987766   5568999998431        22222    556665 6665         24567


Q ss_pred             CeeEEEecccccc-----cCh----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          174 LFDLIFDYTFFCA-----IEP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       174 ~fD~v~~~~~~~~-----~~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      +.|+|++-+.-..     .+.    +....++.-....+.|+|.++.-.|...          ...++...+++ -|+.+
T Consensus       136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~----------e~~~l~r~l~~-~f~~V  204 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS----------EEALLQRRLQA-VFTNV  204 (232)
T ss_pred             cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC----------chHHHHHHHHH-Hhhhc
Confidence            8999997654321     111    2223445555677799999998776553          34566666666 36655


Q ss_pred             EEee
Q 024008          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      +...
T Consensus       205 k~vK  208 (232)
T KOG4589|consen  205 KKVK  208 (232)
T ss_pred             EeeC
Confidence            5443

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.26  E-value=0.0016  Score=52.16  Aligned_cols=139  Identities=18%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-  170 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-  170 (274)
                      +++++.  ..++..|+|+|.-.|+.+.+++.      ...+|+|+|++-...+.  ......++.+++++++||..+.. 
T Consensus        24 ~qeli~--~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~   99 (206)
T PF04989_consen   24 YQELIW--ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEI   99 (206)
T ss_dssp             HHHHHH--HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHH
T ss_pred             HHHHHH--HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHH
Confidence            444554  35689999999999999987765      45699999996443322  22233344578999999987621 


Q ss_pred             --------CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcc---cCHHHHHHH
Q 024008          171 --------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYK---VSVSDYEEV  235 (274)
Q Consensus       171 --------~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----~~~~~~~---~~~~~~~~~  235 (274)
                              ......+|+.-..  |.. +..-..++....++++|+++++.+....+.    ....++.   .....+.++
T Consensus       100 ~~~v~~~~~~~~~vlVilDs~--H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~f  176 (206)
T PF04989_consen  100 VDQVRELASPPHPVLVILDSS--HTH-EHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEF  176 (206)
T ss_dssp             HHTSGSS----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHH
T ss_pred             HHHHHHhhccCCceEEEECCC--ccH-HHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHH
Confidence                    1123345553211  111 233456678999999999999865332211    0111111   246778888


Q ss_pred             HhcCC-CcE
Q 024008          236 LQPMG-FQA  243 (274)
Q Consensus       236 ~~~~G-f~~  243 (274)
                      +.++. |.+
T Consensus       177 L~~~~~f~i  185 (206)
T PF04989_consen  177 LAEHPDFEI  185 (206)
T ss_dssp             HHTTTTEEE
T ss_pred             HHHCCCcEe
Confidence            88876 443

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.22  E-value=0.0069  Score=48.51  Aligned_cols=118  Identities=16%  Similarity=0.106  Sum_probs=71.0

Q ss_pred             HHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC--CC--CeEEEEeCChHHHHHHHHHhhcCC----------------
Q 024008           96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLP----------------  154 (274)
Q Consensus        96 ~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~--~~--~~v~~iD~s~~~~~~a~~~~~~~~----------------  154 (274)
                      +.+++.+..... .+-++.|..||.|+++-.+.-  ..  ..|++.|+++++++.|++|+....                
T Consensus        38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e  117 (246)
T PF11599_consen   38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE  117 (246)
T ss_dssp             HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence            344455444422 335999999999999865543  22  389999999999999988765432                


Q ss_pred             -------------------------CCcceEEEEcccCCC------CCCCCeeEEEeccccccc-------ChhHHHHHH
Q 024008          155 -------------------------NAKFVSFLKADFFTW------CPTELFDLIFDYTFFCAI-------EPEMRAAWA  196 (274)
Q Consensus       155 -------------------------~~~~v~~~~~d~~~~------~~~~~fD~v~~~~~~~~~-------~~~~~~~~l  196 (274)
                                               -..-..+.+.|++++      ......|+|++--.+..+       +.+-...++
T Consensus       118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml  197 (246)
T PF11599_consen  118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML  197 (246)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred             HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence                                     111256788888872      223457999987666554       223457889


Q ss_pred             HHHHhcccCCcEEEEEE
Q 024008          197 QKIKDFLKPDGELITLM  213 (274)
Q Consensus       197 ~~l~~~L~~gG~l~~~~  213 (274)
                      ..++.+|.++++++++.
T Consensus       198 ~~l~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  198 NSLAPVLPERSVVAVSD  214 (246)
T ss_dssp             HHHHCCS-TT-EEEEEE
T ss_pred             HHHHhhCCCCcEEEEec
Confidence            99999996666666654

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PHA01634 hypothetical protein

Probab=97.21  E-value=0.0032  Score=46.04  Aligned_cols=48  Identities=19%  Similarity=0.196  Sum_probs=43.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcC
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      ...+.+|+|||++.|..+++++..|+ .|++++.++...+..+++...+
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            45678999999999999999999888 8999999999999999987655

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.11  E-value=0.0037  Score=59.79  Aligned_cols=124  Identities=20%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             CCeEEEEcCCcchhHHHhhC---------C-----CCeEEEEeCCh---HHHHHHH-----------HHhhc-----CCC
Q 024008          109 KGRALVPGCGTGYDVVAMAS---------P-----ERYVVGLEISD---IAIKKAE-----------ELSSS-----LPN  155 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~---------~-----~~~v~~iD~s~---~~~~~a~-----------~~~~~-----~~~  155 (274)
                      .-+|+|+|-|+|.+.....+         +     ..+++++|..|   +.+..+-           .....     .+.
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            46899999999997654431         1     23899999754   2222221           11111     111


Q ss_pred             ------Cc--ceEEEEcccCCCCC--CCCeeEEEecccccccChhHH-HHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024008          156 ------AK--FVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMR-AAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (274)
Q Consensus       156 ------~~--~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~-~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~  224 (274)
                            .+  ++++..+|+.+..+  ...||+++.-..--.-.+++. ..++.++.++++|||.+....           
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t-----------  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT-----------  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee-----------
Confidence                  01  34567788766222  356999995432211122222 578999999999999998876           


Q ss_pred             cccCHHHHHHHHhcCCCcEEEE
Q 024008          225 YKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                         ....+++-|..+||++.+.
T Consensus       207 ---~a~~vr~~l~~~GF~v~~~  225 (662)
T PRK01747        207 ---SAGFVRRGLQEAGFTVRKV  225 (662)
T ss_pred             ---hHHHHHHHHHHcCCeeeec
Confidence               6788999999999988654

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.10  E-value=0.0023  Score=51.70  Aligned_cols=79  Identities=18%  Similarity=0.111  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEc-ccCCCC-----CCCCeeEEE
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKA-DFFTWC-----PTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~-d~~~~~-----~~~~fD~v~  179 (274)
                      ..++||||.|.-+.-..+-.  -|++.+|.|+++..++.|+.++..+ ++...+++..- |-...+     ..+.||++.
T Consensus        79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tl  158 (292)
T COG3129          79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATL  158 (292)
T ss_pred             ceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEe
Confidence            35899999888766544433  5789999999999999999999877 55555666543 222222     246899999


Q ss_pred             eccccccc
Q 024008          180 DYTFFCAI  187 (274)
Q Consensus       180 ~~~~~~~~  187 (274)
                      |+..||.-
T Consensus       159 CNPPFh~s  166 (292)
T COG3129         159 CNPPFHDS  166 (292)
T ss_pred             cCCCcchh
Confidence            99999864

>PRK11524 putative methyltransferase; Provisional

Probab=97.10  E-value=0.0015  Score=55.65  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=53.9

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024008           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~  152 (274)
                      ..|...++.++.....+++.|||.-||+|..+.+..+.|.+++|+|++++.++.|++++..
T Consensus       192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            3456677788887778899999999999999999999999999999999999999999753

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.07  E-value=0.0013  Score=59.04  Aligned_cols=121  Identities=10%  Similarity=0.044  Sum_probs=82.8

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCCh----HHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024008          110 GRALVPGCGTGYDVVAMASPERYVVGLEISD----IAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~  183 (274)
                      +.|+|..+|.|.++.+|.+..  |+....-|    ..+...-    ..|+   + =+-.|..+.+  -+.+||+|.+..+
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vIy----dRGL---I-G~yhDWCE~fsTYPRTYDLlHA~~l  436 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVIY----DRGL---I-GVYHDWCEAFSTYPRTYDLLHADGL  436 (506)
T ss_pred             eeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhhh----hccc---c-hhccchhhccCCCCcchhheehhhh
Confidence            689999999999999998854  33333322    2222211    1111   1 1223555533  2578999999999


Q ss_pred             ccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          184 FCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       184 ~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      |..... -.+..++-++-|.|+|+|.+++-+...           ...++.++++...|+.........
T Consensus       437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------vl~~v~~i~~~lrW~~~~~d~e~g  494 (506)
T PF03141_consen  437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------VLEKVKKIAKSLRWEVRIHDTEDG  494 (506)
T ss_pred             hhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------HHHHHHHHHHhCcceEEEEecCCC
Confidence            887533 356789999999999999999976222           477888999999998877666443

; GO: 0008168 methyltransferase activity

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=97.05  E-value=0.0016  Score=58.57  Aligned_cols=103  Identities=22%  Similarity=0.272  Sum_probs=76.4

Q ss_pred             CeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecc
Q 024008          110 GRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~  182 (274)
                      ..|+-+|+|-|-+.....+      +..+++++|-+|.++..... .....+.++|+++..|+..+.++ ++.|++++- 
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-  446 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE-  446 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence            4688999999988654443      45589999999999988766 34444568999999999996664 899999863 


Q ss_pred             ccccc-ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          183 FFCAI-EPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       183 ~~~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+..+ +.+.....++-+-+.|||+|+.+=..+
T Consensus       447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY  479 (649)
T KOG0822|consen  447 LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY  479 (649)
T ss_pred             hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence            33322 234445677889999999998765443

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.04  E-value=0.013  Score=53.91  Aligned_cols=126  Identities=21%  Similarity=0.225  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhC----C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC-----CCCCe
Q 024008          108 PKGRALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC-----PTELF  175 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~----~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-----~~~~f  175 (274)
                      +..+|+|..||+|.......+    .  ...++|.|+++.....|+.+.--.+....+....+|-.. +.     ..+.|
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~  265 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF  265 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence            446999999999998766655    2  267999999999999999998777653334566666554 21     23579


Q ss_pred             eEEEecccccc--cC--------------------h-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH
Q 024008          176 DLIFDYTFFCA--IE--------------------P-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~--~~--------------------~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      |.|+++..+..  +.                    . ..-..++.++...|+|||+.-++.........+     ....+
T Consensus       266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~-----~e~~I  340 (489)
T COG0286         266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGG-----AEKDI  340 (489)
T ss_pred             eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCC-----chHHH
Confidence            99999988741  10                    0 111578999999999998766665444332222     35566


Q ss_pred             HHHHhc
Q 024008          233 EEVLQP  238 (274)
Q Consensus       233 ~~~~~~  238 (274)
                      ++.+-+
T Consensus       341 R~~l~~  346 (489)
T COG0286         341 RKDLLE  346 (489)
T ss_pred             HHHHHh
Confidence            666655

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=97.02  E-value=0.0058  Score=50.75  Aligned_cols=142  Identities=17%  Similarity=0.127  Sum_probs=100.9

Q ss_pred             cCCCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCeeEE
Q 024008          104 SGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDLI  178 (274)
Q Consensus       104 ~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~v  178 (274)
                      ...+.++.|+-+| -.-..+++++..+  .++..+|++...++...+.+.+.++ ++++.+..|+.++.|.   ++||+.
T Consensus       148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvf  225 (354)
T COG1568         148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVF  225 (354)
T ss_pred             ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCee
Confidence            3456678899999 4445566666544  4899999999999999999888876 4699999999997764   589999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCC---cEEEEEEccCCCCCCCCCcccCHHHHHH-HHhcCCCcEEEEeecccccC
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD---GELITLMFPISDHVGGPPYKVSVSDYEE-VLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~g---G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      +.-.+-- +  +.+..++.+-...|+.-   |++.+......        ...+.++++ +....||.+.++...--.+.
T Consensus       226 iTDPpeT-i--~alk~FlgRGI~tLkg~~~aGyfgiT~ress--------idkW~eiQr~lIn~~gvVITdiirnFN~Y~  294 (354)
T COG1568         226 ITDPPET-I--KALKLFLGRGIATLKGEGCAGYFGITRRESS--------IDKWREIQRILINEMGVVITDIIRNFNEYV  294 (354)
T ss_pred             ecCchhh-H--HHHHHHHhccHHHhcCCCccceEeeeecccc--------HHHHHHHHHHHHHhcCeeeHhhhhhhhccc
Confidence            8643321 1  34567777777777765   67766553221        124667777 77788998888777666666


Q ss_pred             Cccc
Q 024008          255 PRKG  258 (274)
Q Consensus       255 ~~~~  258 (274)
                      ++.-
T Consensus       295 nwey  298 (354)
T COG1568         295 NWEY  298 (354)
T ss_pred             cccc
Confidence            5543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.93  E-value=0.0017  Score=53.14  Aligned_cols=58  Identities=26%  Similarity=0.354  Sum_probs=46.1

Q ss_pred             CCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHH
Q 024008           91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE  148 (274)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~  148 (274)
                      ...+...++.++.....++..|||.-||+|..+.+..+.|.+.+|+|+++..++.|++
T Consensus       174 ~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3455777888887777888999999999999999999999999999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=96.86  E-value=0.0037  Score=51.43  Aligned_cols=62  Identities=21%  Similarity=0.292  Sum_probs=53.0

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      ..|...+..++.....+++.|||.-||+|..+.+..+.|.+++|+|++++..+.+.+++...
T Consensus       147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            34566677777766678899999999999999999999999999999999999998887543

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.86  E-value=0.023  Score=49.99  Aligned_cols=137  Identities=15%  Similarity=0.121  Sum_probs=92.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v  178 (274)
                      +.++.+|||..+..|.=+..++.   .-..|++-|.+...+...+.++...|+. +...+..|..++    ++. +||-|
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~fDRV  316 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SFDRV  316 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cccee
Confidence            45567999999999988776665   4458999999999999999999998863 466666676542    233 89999


Q ss_pred             Eecccccc---cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024008          179 FDYTFFCA---IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       179 ~~~~~~~~---~~~-----------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                      +.-.....   +..                 ..-++++....+++++||+|+....+....       -....+..+|+.
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~-------ENE~vV~yaL~K  389 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE-------ENEAVVDYALKK  389 (460)
T ss_pred             eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh-------hhHHHHHHHHHh
Confidence            96543322   100                 112577888899999999999988766432       134455555555


Q ss_pred             CCCcEEEEeeccccc
Q 024008          239 MGFQAISIVDNKLAI  253 (274)
Q Consensus       239 ~Gf~~~~~~~~~~~~  253 (274)
                        +..+++.+....+
T Consensus       390 --~p~~kL~p~~~~i  402 (460)
T KOG1122|consen  390 --RPEVKLVPTGLDI  402 (460)
T ss_pred             --CCceEeccccccC
Confidence              4334444433333

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.81  E-value=0.0086  Score=49.53  Aligned_cols=101  Identities=17%  Similarity=0.063  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhc-----CCCCcceEEEEcccCCCC-----CCCCeeE
Q 024008          109 KGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSS-----LPNAKFVSFLKADFFTWC-----PTELFDL  177 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~-----~~~~~~v~~~~~d~~~~~-----~~~~fD~  177 (274)
                      ..+|||+|+|+|-.++..+. .+++|+..|... .+...+.+...     .++..++.....+.....     ++..+|+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            46799999999987777776 678999989743 44444333222     222234555555555421     1222999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                      |+++.++..-  .....++..+...|..++.+++.
T Consensus       166 ilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~  198 (248)
T KOG2793|consen  166 ILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLA  198 (248)
T ss_pred             EEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEE
Confidence            9999887754  34566778888889889954443

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.79  E-value=0.0073  Score=52.62  Aligned_cols=123  Identities=12%  Similarity=0.045  Sum_probs=85.8

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC----CeeEEEeccc
Q 024008          109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE----LFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----~fD~v~~~~~  183 (274)
                      ..+++|+-||.|....-+...|+ .+.++|+++.+++.-+.+.+.      ..++..|+.......    .+|+++....
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP   76 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP   76 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence            35899999999999999999887 577899999999999888742      456667776532221    7899998877


Q ss_pred             ccccCh--------hHH---HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024008          184 FCAIEP--------EMR---AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       184 ~~~~~~--------~~~---~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~  242 (274)
                      .+.++.        +.+   -.-+.++...++|  .+++.+....-...   ..-..+.+.+.|++.||.
T Consensus        77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~---~~~~~~~i~~~L~~~GY~  141 (328)
T COG0270          77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS---KGQTFDEIKKELEELGYG  141 (328)
T ss_pred             CcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc---CchHHHHHHHHHHHcCCc
Confidence            666532        111   2334566667777  55555533321111   223689999999999997

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.72  E-value=0.0073  Score=50.67  Aligned_cols=106  Identities=22%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCC---CCCCCCeeEEE
Q 024008          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFT---WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~---~~~~~~fD~v~  179 (274)
                      .+++||-||.|.|......++.  --++.-+|++...++..++-.+..  +. .+++.+..||.+.   ....++||+|+
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii  200 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII  200 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence            4589999999999999887773  238999999999999998877653  22 3679999999877   34468999999


Q ss_pred             eccc--ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTF--FCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~--~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .-..  ......--...+...+.+.||+||++++..
T Consensus       201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            5321  111111123678899999999999998754

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.72  E-value=0.0051  Score=50.38  Aligned_cols=77  Identities=22%  Similarity=0.310  Sum_probs=47.7

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh---hcCCC-----CcceEEEEcccCCC--CCCCCeeEEE
Q 024008          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS---SSLPN-----AKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~---~~~~~-----~~~v~~~~~d~~~~--~~~~~fD~v~  179 (274)
                      .+|||+-+|-|..++.++..|++|+++|-||-.....+.-+   .....     ..+++++.+|..+.  .++++||+|+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY  156 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY  156 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence            48999999999999999888999999999997766655432   22211     14799999999884  3467999999


Q ss_pred             ecccccc
Q 024008          180 DYTFFCA  186 (274)
Q Consensus       180 ~~~~~~~  186 (274)
                      .-..|.+
T Consensus       157 ~DPMFp~  163 (234)
T PF04445_consen  157 FDPMFPE  163 (234)
T ss_dssp             E--S---
T ss_pred             ECCCCCC
Confidence            8877765

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.69  E-value=0.0081  Score=51.39  Aligned_cols=80  Identities=18%  Similarity=0.216  Sum_probs=57.5

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----  169 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----  169 (274)
                      .+.+.+.  ..+++..+|.=-|.|+.+..+++  ++.+++|+|.++.+++.|++++...  .+++.++.+++.+.     
T Consensus        11 Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~   86 (310)
T PF01795_consen   11 EVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK   86 (310)
T ss_dssp             HHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred             HHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence            3444443  45668999999999999999987  5689999999999999999988765  37899999998761     


Q ss_pred             -C-CCCCeeEEEe
Q 024008          170 -C-PTELFDLIFD  180 (274)
Q Consensus       170 -~-~~~~fD~v~~  180 (274)
                       . ...++|.|+.
T Consensus        87 ~~~~~~~~dgiL~   99 (310)
T PF01795_consen   87 ELNGINKVDGILF   99 (310)
T ss_dssp             HTTTTS-EEEEEE
T ss_pred             HccCCCccCEEEE
Confidence             2 3357888886

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.52  E-value=0.06  Score=38.97  Aligned_cols=101  Identities=17%  Similarity=0.130  Sum_probs=68.2

Q ss_pred             CCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEeccccccc
Q 024008          117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       117 ~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~~~~~~~  187 (274)
                      ||.|..+..+++    .+..++.+|.+++.++.++...        +.++.+|..+.     ..-++++.+++.     .
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~i~~a~~vv~~-----~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAGIEKADAVVIL-----T   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTTGGCESEEEEE-----S
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcCccccCEEEEc-----c
Confidence            566777776665    4559999999999988887654        67899999872     223578877753     2


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      +.+.....+....+.+.|...++...              ...+..+.|+..|...+
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~~~--------------~~~~~~~~l~~~g~d~v  113 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIARV--------------NDPENAELLRQAGADHV  113 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEEEE--------------SSHHHHHHHHHTT-SEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHCCcCEE
Confidence            23444455566667778888887766              34566778888887654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=96.46  E-value=0.062  Score=42.38  Aligned_cols=133  Identities=15%  Similarity=0.073  Sum_probs=86.6

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  171 (274)
                      +++++.  ..++..|+|+|.-.|..+++++.    -|  .+|+++|++-...+.+....      +++.|+.++-.++..
T Consensus        61 yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i~f~egss~dpai  132 (237)
T COG3510          61 YQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDILFIEGSSTDPAI  132 (237)
T ss_pred             HHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCeEEEeCCCCCHHH
Confidence            455554  46678999999999999998887    34  79999999866655444332      579999999876321


Q ss_pred             -------CCCeeEE-EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-CCc--c-cCHHHHHHHHhcC
Q 024008          172 -------TELFDLI-FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-PPY--K-VSVSDYEEVLQPM  239 (274)
Q Consensus       172 -------~~~fD~v-~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~  239 (274)
                             .+.|--| ++...-|+.  +..-+.++.+..+|..|-++++.+....+.... .+.  . -..+-+.+.+++.
T Consensus       133 ~eqi~~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~  210 (237)
T COG3510         133 AEQIRRLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREF  210 (237)
T ss_pred             HHHHHHHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhC
Confidence                   1223233 333333433  344566788888999999999887665544321 111  1 2456677777776


Q ss_pred             C
Q 024008          240 G  240 (274)
Q Consensus       240 G  240 (274)
                      +
T Consensus       211 p  211 (237)
T COG3510         211 P  211 (237)
T ss_pred             C
Confidence            5

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.45  E-value=0.019  Score=49.70  Aligned_cols=94  Identities=22%  Similarity=0.229  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCCCCCCCCeeEEEe
Q 024008          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWCPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~fD~v~~  180 (274)
                      ..++.+|+=+|+| .|..+.++++ .+++|+++|.+++-.+.|++.-..       .++..   |..+.. .+.||+|+.
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~-~~~~d~ii~  235 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAV-KEIADAIID  235 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHh-HhhCcEEEE
Confidence            3456788888877 4466777777 889999999999999999887532       22332   222211 123999986


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      .-. .        ..+....+.|++||.++++-...
T Consensus       236 tv~-~--------~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         236 TVG-P--------ATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             CCC-h--------hhHHHHHHHHhcCCEEEEECCCC
Confidence            443 2        23577889999999999987664

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.11  Score=42.83  Aligned_cols=105  Identities=13%  Similarity=0.099  Sum_probs=74.4

Q ss_pred             CCeEEEEcCCcchhHHHhhC----CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeE-E
Q 024008          109 KGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDL-I  178 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~----~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~-v  178 (274)
                      +..++|+|+|+..-+..|..    .+  .+++.+|++...+....+.+...-..-.+.-+++|+..   ..+..+--+ +
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~  158 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV  158 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence            57999999999987766655    33  48999999998886654444332212236667888875   223222223 3


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +....+..+.++....++.++...+.||-.+++..
T Consensus       159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv  193 (321)
T COG4301         159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV  193 (321)
T ss_pred             EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence            33457888988899999999999999999988754

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.25  E-value=0.052  Score=44.37  Aligned_cols=107  Identities=19%  Similarity=0.222  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v  178 (274)
                      ..++.+||-+|+++|.....+..   +...|+++|.++..-......+...   .|+--+..|+..+..    -.-.|+|
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmVDvI  230 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMVDVI  230 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeEEEE
Confidence            45678999999999998776666   5668999999864333322222221   356667777764321    1246666


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~  219 (274)
                      ++--    ..+++...+.-.....|++||-+++.....+-.
T Consensus       231 FaDv----aqpdq~RivaLNA~~FLk~gGhfvisikancid  267 (317)
T KOG1596|consen  231 FADV----AQPDQARIVALNAQYFLKNGGHFVISIKANCID  267 (317)
T ss_pred             eccC----CCchhhhhhhhhhhhhhccCCeEEEEEeccccc
Confidence            6421    123455566677888999999999877655443

>PRK13699 putative methylase; Provisional

Probab=96.22  E-value=0.027  Score=46.37  Aligned_cols=82  Identities=15%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             eEEEEcccCC---CCCCCCeeEEEecccccc---------cC----hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC
Q 024008          159 VSFLKADFFT---WCPTELFDLIFDYTFFCA---------IE----PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG  222 (274)
Q Consensus       159 v~~~~~d~~~---~~~~~~fD~v~~~~~~~~---------~~----~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~  222 (274)
                      ++++.+|..+   ..+++++|+|++...+..         +.    .+-...++.++.++|||||.+++.....      
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------   75 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------   75 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc------
Confidence            3567788765   567889999999877641         00    1223578899999999999887643111      


Q ss_pred             CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          223 PPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                           ....+...++++||.+....-+..
T Consensus        76 -----~~~~~~~al~~~GF~l~~~IiW~K   99 (227)
T PRK13699         76 -----RVDRFMAAWKNAGFSVVGHLVFTK   99 (227)
T ss_pred             -----cHHHHHHHHHHCCCEEeeEEEEEC
Confidence                 234567788999998776555443

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.20  E-value=0.014  Score=50.58  Aligned_cols=99  Identities=19%  Similarity=0.069  Sum_probs=74.0

Q ss_pred             CCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--CCeeEEEecccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF  184 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~v~~~~~~  184 (274)
                      +.+|||.-+|+|.=++.++. .+. +++.-|+||.+++.+++|+..+.. .+...+..|...+...  ..||+|=. .+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DPF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CCC
Confidence            67999999999998887776 444 899999999999999999988732 3455555777664433  67888752 233


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .     ....+++...+.++.||++.++.-
T Consensus       131 G-----SPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         131 G-----SPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             C-----CCchHHHHHHHHhhcCCEEEEEec
Confidence            3     223477888888999999998653

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.14  E-value=0.034  Score=46.53  Aligned_cols=44  Identities=20%  Similarity=0.083  Sum_probs=34.8

Q ss_pred             CCeEEEEcCCcchhHHHhhC----------CCCeEEEEeCChHHHHHHHHHhhc
Q 024008          109 KGRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~----------~~~~v~~iD~s~~~~~~a~~~~~~  152 (274)
                      +.+|+|+|+|+|.++..+++          ...+++.||.|+...+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            36999999999999987765          125899999999999998888865

; PDB: 4F3N_A 1ZKD_B.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.97  E-value=0.0044  Score=55.44  Aligned_cols=104  Identities=15%  Similarity=0.087  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~v  178 (274)
                      .++.+|||.=|++|.-++..++  ++. .+++-|.++.+++..++++..++..+.++-...|+..     ......||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            3457999999999999988877  454 8999999999999999999888777777777788765     2334789988


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      -. ..+.     ....+++...+.++.||++++..-.+
T Consensus       188 DL-DPyG-----s~s~FLDsAvqav~~gGLL~vT~TD~  219 (525)
T KOG1253|consen  188 DL-DPYG-----SPSPFLDSAVQAVRDGGLLCVTCTDM  219 (525)
T ss_pred             ec-CCCC-----CccHHHHHHHHHhhcCCEEEEEecch
Confidence            62 2222     23467888999999999999977443

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.97  E-value=0.0061  Score=43.25  Aligned_cols=47  Identities=19%  Similarity=0.159  Sum_probs=35.2

Q ss_pred             cHHHHHHHhcCCC--CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChH
Q 024008           95 APIIVHLHQSGAL--PKGRALVPGCGTGYDVVAMASPERYVVGLEISDI  141 (274)
Q Consensus        95 ~~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~  141 (274)
                      +..+..+......  +...-+|+|||.|.+...|...|..-.|+|.-..
T Consensus        43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R   91 (112)
T PF07757_consen   43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR   91 (112)
T ss_pred             HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence            4444444444322  3468999999999999999999999999998543

; GO: 0008168 methyltransferase activity

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.89  E-value=0.044  Score=47.46  Aligned_cols=131  Identities=17%  Similarity=0.048  Sum_probs=80.0

Q ss_pred             EEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccccccC
Q 024008          112 ALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIE  188 (274)
Q Consensus       112 vLDiG~G~G~~~~~l~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~  188 (274)
                      |+|+-||.|....-+.+.|++ +.++|+++.+++..+.+.+.       .+..+|+.+..+  -..+|+++.......++
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS   73 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFPCQPFS   73 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence            589999999999999888986 45799999999998888743       334567766321  23589999876654442


Q ss_pred             h--------hHHHHHHHHH---HhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          189 P--------EMRAAWAQKI---KDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       189 ~--------~~~~~~l~~l---~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      .        +.+..++..+   .+.++|.  +++.+....-...  ...-....+...|+..||.+....-....+
T Consensus        74 ~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~--~~~~~~~~i~~~l~~~GY~v~~~~l~a~dy  145 (315)
T TIGR00675        74 IAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSH--DKGRTFKVIIETLEELGYKVYYKVLNAKDF  145 (315)
T ss_pred             hhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhc--ccchHHHHHHHHHHhCCCEEEEEEEcHHHC
Confidence            1        2222333333   3344553  4444432211100  001135678888999999875544433333

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.88  E-value=0.016  Score=48.83  Aligned_cols=72  Identities=11%  Similarity=-0.028  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCcchhHH-HhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEe
Q 024008          109 KGRALVPGCGTGYDVV-AMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD  180 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~-~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~  180 (274)
                      +..|+|+=+|.|+++. .+...|+ .|+++|.+|..++..++++..+++.+++.+..+|-...-+....|-|..
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL  268 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL  268 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee
Confidence            4689999999999998 7777777 8999999999999999999999888888889999888777777887773

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.87  E-value=0.017  Score=46.69  Aligned_cols=93  Identities=16%  Similarity=0.175  Sum_probs=65.3

Q ss_pred             CeEEEEcCCcchhHHHhhC--------CCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------
Q 024008          110 GRALVPGCGTGYDVVAMAS--------PER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------  169 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--------~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------  169 (274)
                      .+++|+.+..|.++..|.+        .+.   .+++||+-+-        ++-    +.|.-+++|+...         
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI----~GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------API----EGVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------Ccc----CceEEeecccCCHhHHHHHHHH
Confidence            6899999999999988876        122   3999998552        222    2477889999872         


Q ss_pred             CCCCCeeEEEeccc-----ccccCh----hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          170 CPTELFDLIFDYTF-----FCAIEP----EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       170 ~~~~~fD~v~~~~~-----~~~~~~----~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +..++.|+|+|-++     +|.++.    ..+-..+.-...+|+|||.++.-.|
T Consensus       111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif  164 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF  164 (294)
T ss_pred             hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence            33468999999765     344432    2334556667788999999986443

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=95.73  E-value=0.0097  Score=43.98  Aligned_cols=77  Identities=23%  Similarity=0.267  Sum_probs=49.6

Q ss_pred             ceEEEEcccCCCC--CCCCeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024008          158 FVSFLKADFFTWC--PTELFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE  234 (274)
Q Consensus       158 ~v~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~~~-~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      ++++..+|+.+..  ....||+|+.-..-..-.++. ...++.++.+++++||.+....              ....+.+
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------~a~~Vr~   97 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------SAGAVRR   97 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------BHHHHH
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------chHHHHH
Confidence            4566778876521  237899999643221112221 1578999999999999987765              4678999


Q ss_pred             HHhcCCCcEEEEee
Q 024008          235 VLQPMGFQAISIVD  248 (274)
Q Consensus       235 ~~~~~Gf~~~~~~~  248 (274)
                      .|.++||.+.+...
T Consensus        98 ~L~~aGF~v~~~~g  111 (124)
T PF05430_consen   98 ALQQAGFEVEKVPG  111 (124)
T ss_dssp             HHHHCTEEEEEEE-
T ss_pred             HHHHcCCEEEEcCC
Confidence            99999999876654

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.67  E-value=0.052  Score=46.98  Aligned_cols=130  Identities=16%  Similarity=0.063  Sum_probs=81.4

Q ss_pred             eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEeccccc
Q 024008          111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDYTFFC  185 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~~~~~~  185 (274)
                      +++|+-||.|.....+...|. .+.++|+++.+.+.-+.|..        ....+|+.+..    +. .+|+++......
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence            689999999999999999887 68899999999999998883        67888888732    22 599999876655


Q ss_pred             ccCh--------h----HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          186 AIEP--------E----MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       186 ~~~~--------~----~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      .++.        +    ....+ -++.+.++|.-  ++.+....-..  .........+.+.|++.||.+....-....+
T Consensus        73 ~fS~ag~~~~~~d~r~~L~~~~-~~~v~~~~Pk~--~~~ENV~~l~~--~~~~~~~~~i~~~l~~lGY~v~~~vlna~~y  147 (335)
T PF00145_consen   73 GFSIAGKRKGFDDPRNSLFFEF-LRIVKELKPKY--FLLENVPGLLS--SKNGEVFKEILEELEELGYNVQWRVLNAADY  147 (335)
T ss_dssp             TTSTTSTHHCCCCHTTSHHHHH-HHHHHHHS-SE--EEEEEEGGGGT--GGGHHHHHHHHHHHHHTTEEEEEEEEEGGGG
T ss_pred             eEeccccccccccccchhhHHH-HHHHhhccceE--EEecccceeec--cccccccccccccccccceeehhccccHhhC
Confidence            5421        1    12233 33445567643  33342221110  0011235788899999999876555444444


Q ss_pred             C
Q 024008          254 G  254 (274)
Q Consensus       254 ~  254 (274)
                      +
T Consensus       148 G  148 (335)
T PF00145_consen  148 G  148 (335)
T ss_dssp             T
T ss_pred             C
Confidence            3

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.045  Score=47.49  Aligned_cols=56  Identities=16%  Similarity=0.065  Sum_probs=42.9

Q ss_pred             HHHHHhcCCCC-CCeEEEEcCCcchhHHHhhC----------CCCeEEEEeCChHHHHHHHHHhhcC
Q 024008           98 IVHLHQSGALP-KGRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        98 ~~~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~----------~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      +.+.+.....| +..++|+|.|+|.++..+++          ...++..||+|++....-+++++..
T Consensus        66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            44444444444 46899999999999887765          2458999999999999888887665

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=95.49  E-value=0.18  Score=39.35  Aligned_cols=82  Identities=20%  Similarity=0.201  Sum_probs=58.1

Q ss_pred             EEcccCCC---C--CCCCeeEEEecccccc-----------cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc
Q 024008          162 LKADFFTW---C--PTELFDLIFDYTFFCA-----------IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY  225 (274)
Q Consensus       162 ~~~d~~~~---~--~~~~fD~v~~~~~~~~-----------~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~  225 (274)
                      ...|+.+.   .  ....||.|+.+.+...           .....+..++..+.++|+++|.+.+......      + 
T Consensus        58 ~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~------p-  130 (166)
T PF10354_consen   58 HGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ------P-  130 (166)
T ss_pred             cCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC------C-
Confidence            33466552   2  3578999998866443           1123457888999999999999998774332      2 


Q ss_pred             ccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          226 KVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       226 ~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                       ++.-.+.++.+.+||.++.......
T Consensus       131 -y~~W~i~~lA~~~gl~l~~~~~F~~  155 (166)
T PF10354_consen  131 -YDSWNIEELAAEAGLVLVRKVPFDP  155 (166)
T ss_pred             -CccccHHHHHHhcCCEEEEEecCCH
Confidence             3567888999999999988876543

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.45  E-value=0.043  Score=42.04  Aligned_cols=131  Identities=19%  Similarity=0.142  Sum_probs=72.6

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHH-HHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccc
Q 024008          109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKK-AEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFF  184 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~  184 (274)
                      +++.+-+|+..=-.=......|+ ++..+|.++--+.. .+.++        -.+...|+..  ..-.++||.+.+..++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si   73 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI   73 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence            34667777664322122222444 78889987632111 11111        1223333332  1224679999999988


Q ss_pred             ccc---------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          185 CAI---------EPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       185 ~~~---------~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      +|.         ++.--...+.++..+||+||.+++...-..+. ..+....+....+.-++.  ||+.+..-..
T Consensus        74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~--gfe~i~tfs~  146 (177)
T PF03269_consen   74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFY--GFEWIDTFSG  146 (177)
T ss_pred             ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhC--CcEEEeeecc
Confidence            775         22222456789999999999999876433322 112222345666655554  8988887554

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=95.37  E-value=0.052  Score=46.13  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=63.9

Q ss_pred             cHHHHHHHhcCCCCCCe---EEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-
Q 024008           95 APIIVHLHQSGALPKGR---ALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-  168 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~---vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-  168 (274)
                      ...+.+++........+   =+|||.|+.+.-..+..  .++...++|++...+..|+.++..++++..+..+.....+ 
T Consensus        86 ihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~kt  165 (419)
T KOG2912|consen   86 IHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKT  165 (419)
T ss_pred             HHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhh
Confidence            34455666544222233   37999888776554433  5789999999999999999999999988888887775443 


Q ss_pred             -------CCCCCCeeEEEecccc
Q 024008          169 -------WCPTELFDLIFDYTFF  184 (274)
Q Consensus       169 -------~~~~~~fD~v~~~~~~  184 (274)
                             ..+...||+..|+..|
T Consensus       166 ll~d~~~~~~e~~ydFcMcNPPF  188 (419)
T KOG2912|consen  166 LLMDALKEESEIIYDFCMCNPPF  188 (419)
T ss_pred             cchhhhccCccceeeEEecCCch
Confidence                   2233469999998765

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.35  E-value=0.14  Score=47.22  Aligned_cols=98  Identities=17%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCcc-hhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----------CC---
Q 024008          107 LPKGRALVPGCGTG-YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----------WC---  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G-~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------~~---  170 (274)
                      .++.+|+=+|||.= ..+...++ .|+.|+++|.+++.++.++..-        .++...|..+           ..   
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG--------A~~v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG--------AEFLELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEEeccccccccccchhhhcchhH
Confidence            46789999999974 44455555 7889999999999999888742        1222111100           00   


Q ss_pred             --------C--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          171 --------P--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       171 --------~--~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                              .  ...+|+|+.......-.  ....+.+++.+.++|||.++....
T Consensus       235 ~~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        235 IKAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEEcc
Confidence                    0  14699999765432211  112234889999999999887654

>PTZ00357 methyltransferase; Provisional

Probab=95.25  E-value=0.07  Score=50.07  Aligned_cols=96  Identities=17%  Similarity=0.130  Sum_probs=61.2

Q ss_pred             eEEEEcCCcchhHHHhhC----C--CCeEEEEeCChHHHHHHHHHh---hcCCC-----CcceEEEEcccCCCCCC----
Q 024008          111 RALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELS---SSLPN-----AKFVSFLKADFFTWCPT----  172 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~----~--~~~v~~iD~s~~~~~~a~~~~---~~~~~-----~~~v~~~~~d~~~~~~~----  172 (274)
                      .|+-+|+|-|-+.....+    .  ..++++||-++.++.....+.   ..+..     .++|+++..|+..+..+    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            589999999988654433    2  348999999977554444442   22211     35699999999985322    


Q ss_pred             --------CCeeEEEe--cccccccChhHHHHHHHHHHhcccC----CcE
Q 024008          173 --------ELFDLIFD--YTFFCAIEPEMRAAWAQKIKDFLKP----DGE  208 (274)
Q Consensus       173 --------~~fD~v~~--~~~~~~~~~~~~~~~l~~l~~~L~~----gG~  208 (274)
                              +++|+||+  .+.|..  .+...+.|+-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGD--NELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGD--NELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhccccc--ccCCHHHHHHHHHhhhhhcccccc
Confidence                    27999997  344443  22334455556666655    675

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.21  E-value=0.55  Score=36.40  Aligned_cols=106  Identities=21%  Similarity=0.184  Sum_probs=70.9

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHh-hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--C-
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAM-ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--C-  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-  170 (274)
                      ...+...+........+|+-|||=+-...+.- ...+.+++..|++...-...          .+ .|+--|...+  . 
T Consensus        12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~----------~~-~F~fyD~~~p~~~~   80 (162)
T PF10237_consen   12 AEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG----------GD-EFVFYDYNEPEELP   80 (162)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC----------Cc-ceEECCCCChhhhh
Confidence            44444444443445579999999775555444 22667999999988632211          22 4666666552  1 


Q ss_pred             --CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          171 --PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 --~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                        -.++||+|++-..+  +..+...+....+..++++++.+++..
T Consensus        81 ~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T  123 (162)
T PF10237_consen   81 EELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT  123 (162)
T ss_pred             hhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence              14689999998888  666777778788888889988888764

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=95.10  E-value=0.1  Score=43.32  Aligned_cols=123  Identities=16%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-------CCCeEEEEeCC--------------------------hHHHHHHHHHhhcCC
Q 024008          108 PKGRALVPGCGTGYDVVAMAS-------PERYVVGLEIS--------------------------DIAIKKAEELSSSLP  154 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-------~~~~v~~iD~s--------------------------~~~~~~a~~~~~~~~  154 (274)
                      -++-|+|+||-.|..++.++.       .+.+++++|--                          ....+..++++...+
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            458999999999987755432       34578887732                          124555666666655


Q ss_pred             C-CcceEEEEcccCCCCCCCCeeEEEecccccccCh---hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024008          155 N-AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS  230 (274)
Q Consensus       155 ~-~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~---~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      + .+++.++.|.+.+..+..+.+-|    ++-+++-   +.....|+.++..|.|||++++-+++..         --..
T Consensus       154 l~~~~v~~vkG~F~dTLp~~p~~~I----All~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~---------gcr~  220 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDAPIERI----ALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHP---------GCRK  220 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC-TT--E----EEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTH---------HHHH
T ss_pred             CCcccEEEECCcchhhhccCCCccE----EEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCCh---------HHHH
Confidence            4 46899999999774443222211    1222322   3446788999999999999999776541         1255


Q ss_pred             HHHHHHhcCCCcE
Q 024008          231 DYEEVLQPMGFQA  243 (274)
Q Consensus       231 ~~~~~~~~~Gf~~  243 (274)
                      -+.+.++++|...
T Consensus       221 AvdeF~~~~gi~~  233 (248)
T PF05711_consen  221 AVDEFRAEHGITD  233 (248)
T ss_dssp             HHHHHHHHTT--S
T ss_pred             HHHHHHHHcCCCC
Confidence            6777788888654

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=95.05  E-value=0.044  Score=47.11  Aligned_cols=109  Identities=20%  Similarity=0.173  Sum_probs=78.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHH-------HHHHhhcCCCC-cceEEEEcccCCC--CCCCCe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKK-------AEELSSSLPNA-KFVSFLKADFFTW--CPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~-------a~~~~~~~~~~-~~v~~~~~d~~~~--~~~~~f  175 (274)
                      ..++..|+|.-.|||.++...+.-|+.|.|.|++-.++..       .+.|.+..+.+ --+..+.+|..+.  -....|
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f  285 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF  285 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence            4567899999999999999999999999999999877763       34455555432 2356788888772  224579


Q ss_pred             eEEEeccccccc------------------------Ch-------hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          176 DLIFDYTFFCAI------------------------EP-------EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~------------------------~~-------~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |.|+|-..+.--                        |.       ......+.-..+.|..||+++....
T Consensus       286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence            999997665321                        10       1124566777888999999887554

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.98  E-value=0.011  Score=49.42  Aligned_cols=106  Identities=17%  Similarity=0.174  Sum_probs=63.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHH-HHhhcCC-----CCcc---eEEEEc---ccCCCCCC
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAE-ELSSSLP-----NAKF---VSFLKA---DFFTWCPT  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~-~~~~~~~-----~~~~---v~~~~~---d~~~~~~~  172 (274)
                      ...+++|||+|||+|...+.....+ ..+...|++.+.+..-. .+.....     ..++   ..+...   |. .....
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg-~~~~t  192 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDG-VFNHT  192 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccc-hhhhc
Confidence            4567899999999999998887766 58888898887773211 1100000     0011   112222   22 11222


Q ss_pred             C--CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          173 E--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       173 ~--~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +  .||+|.++..+...+. ....+.......++++|+++...
T Consensus       193 ~~~~ydlIlsSetiy~~~~-~~~~~~~~r~~l~~~D~~~~~aA  234 (282)
T KOG2920|consen  193 ERTHYDLILSSETIYSIDS-LAVLYLLHRPCLLKTDGVFYVAA  234 (282)
T ss_pred             cccchhhhhhhhhhhCcch-hhhhHhhhhhhcCCccchhhhhh
Confidence            3  7999998887776532 22222566677788899877654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=94.96  E-value=0.058  Score=47.80  Aligned_cols=61  Identities=13%  Similarity=0.089  Sum_probs=54.3

Q ss_pred             cceEEEEcccCC---CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       157 ~~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      +++++..+++.+   -.+++++|.++.+....+++++.....++++.+.++|||+++.-.....
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            789999999987   3467899999999999999999999999999999999999998776543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=94.86  E-value=0.49  Score=41.28  Aligned_cols=135  Identities=14%  Similarity=0.116  Sum_probs=85.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---C-----C-
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---W-----C-  170 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~------~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~-----~-  170 (274)
                      ..++.+|||+.+..|.=+.++.+..      ..+++=|+++..+...+......+ +.++.+...|+..   .     . 
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence            4567899999999999998887722      279999999999888888774432 2344444444432   1     1 


Q ss_pred             -CCCCeeEEEecccc------cccCh---------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC
Q 024008          171 -PTELFDLIFDYTFF------CAIEP---------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS  228 (274)
Q Consensus       171 -~~~~fD~v~~~~~~------~~~~~---------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~  228 (274)
                       ....||-|++--..      ..-+.               ..--.++.+-.++|++||.++....+....       -.
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi-------eN  304 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI-------EN  304 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch-------hh
Confidence             22468988863211      10000               111367888999999999999887655321       13


Q ss_pred             HHHHHHHHhcCC--CcEEEEee
Q 024008          229 VSDYEEVLQPMG--FQAISIVD  248 (274)
Q Consensus       229 ~~~~~~~~~~~G--f~~~~~~~  248 (274)
                      ..-+.++++..|  +.++.+..
T Consensus       305 EaVV~~~L~~~~~~~~lv~~~~  326 (375)
T KOG2198|consen  305 EAVVQEALQKVGGAVELVDVSG  326 (375)
T ss_pred             HHHHHHHHHHhcCcccceeecc
Confidence            555666666555  55554444

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.86  E-value=0.018  Score=41.14  Aligned_cols=75  Identities=21%  Similarity=0.314  Sum_probs=42.5

Q ss_pred             CeeEEEeccccccc----ChhHHHHHHHHHHhcccCCcEEEEEEccCC--CCCCCC---------CcccCHHHHHHHHhc
Q 024008          174 LFDLIFDYTFFCAI----EPEMRAAWAQKIKDFLKPDGELITLMFPIS--DHVGGP---------PYKVSVSDYEEVLQP  238 (274)
Q Consensus       174 ~fD~v~~~~~~~~~----~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~  238 (274)
                      +||+|+|..+--++    .++-+..+++++++.|+|||.+++.-.+=.  ......         ...+.++++...+.+
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~   80 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE   80 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence            48999998875443    235567899999999999999998653210  000000         112467788888887


Q ss_pred             --CCCcEEEEee
Q 024008          239 --MGFQAISIVD  248 (274)
Q Consensus       239 --~Gf~~~~~~~  248 (274)
                        .||..++...
T Consensus        81 ~evGF~~~e~~~   92 (110)
T PF06859_consen   81 PEVGFSSVEELG   92 (110)
T ss_dssp             TTT---EEEEE-
T ss_pred             cccceEEEEEcc
Confidence              5888776433

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.73  E-value=0.22  Score=35.86  Aligned_cols=81  Identities=17%  Similarity=0.143  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCcchh-HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccccc
Q 024008          109 KGRALVPGCGTGYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~-~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~~  185 (274)
                      .++|+|+|-|-=.. +..|++.|+.++++|+++.       +.+ .    .++++..|++++.  -....|+|++.-   
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-~----g~~~v~DDitnP~~~iY~~A~lIYSiR---   78 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-E----GLRFVVDDITNPNISIYEGADLIYSIR---   78 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-c----cceEEEccCCCccHHHhhCccceeecC---
Confidence            45999998776433 4566779999999999886       222 2    3899999999843  235678888642   


Q ss_pred             ccChhHHHHHHHHHHhcccCC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPD  206 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~g  206 (274)
                        +++++...+-++.+.++-.
T Consensus        79 --pppEl~~~ildva~aVga~   97 (129)
T COG1255          79 --PPPELQSAILDVAKAVGAP   97 (129)
T ss_pred             --CCHHHHHHHHHHHHhhCCC
Confidence              3345555556666655433

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.68  E-value=0.55  Score=40.31  Aligned_cols=136  Identities=15%  Similarity=0.096  Sum_probs=94.8

Q ss_pred             CCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC-----C-----CCC
Q 024008          109 KGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW-----C-----PTE  173 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~-----~-----~~~  173 (274)
                      -..|+-+|||-  .+....-  + +.+|+-+|. |+.++.=++.+++.+.  ..++.++..|+...     .     ..+
T Consensus        93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            36899998875  4444433  2 456777776 6777777777766542  23789999999841     1     234


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc-cCCC------C------------CCCCCcc-cCHHHHH
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PISD------H------------VGGPPYK-VSVSDYE  233 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~-~~~~------~------------~~~~~~~-~~~~~~~  233 (274)
                      .--++++-+++.+++++....+++.+...+.||..++.... ....      .            .....++ ....++.
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~  249 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE  249 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence            56688888999999999999999999999999888776542 1100      0            0112223 3589999


Q ss_pred             HHHhcCCCcEEEEe
Q 024008          234 EVLQPMGFQAISIV  247 (274)
Q Consensus       234 ~~~~~~Gf~~~~~~  247 (274)
                      .++.+.||......
T Consensus       250 ~~l~~~g~~~~~~~  263 (297)
T COG3315         250 TWLAERGWRSTLNR  263 (297)
T ss_pred             HHHHhcCEEEEecC
Confidence            99999999887763

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.32  E-value=0.13  Score=42.63  Aligned_cols=86  Identities=20%  Similarity=0.134  Sum_probs=63.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~  185 (274)
                      .+++..+|+|+-.|+++..|.+++..|++||..+-+-     .+-.   .+.|+....|-++..| ..+.|-.+|-.+  
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~-----sL~d---tg~v~h~r~DGfk~~P~r~~idWmVCDmV--  279 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQ-----SLMD---TGQVTHLREDGFKFRPTRSNIDWMVCDMV--  279 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcceEEEEeccchhhh-----hhhc---ccceeeeeccCcccccCCCCCceEEeehh--
Confidence            3568999999999999999999999999999765321     1112   2568999999999766 567898887655  


Q ss_pred             ccChhHHHHHHHHHHhcccCC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPD  206 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~g  206 (274)
                          +...++-..+..+|..|
T Consensus       280 ----EkP~rv~~li~~Wl~nG  296 (358)
T COG2933         280 ----EKPARVAALIAKWLVNG  296 (358)
T ss_pred             ----cCcHHHHHHHHHHHHcc
Confidence                23345556677777644

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.27  E-value=0.65  Score=42.42  Aligned_cols=128  Identities=11%  Similarity=-0.024  Sum_probs=75.8

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024008          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------------  171 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------------  171 (274)
                      .+++|+-||.|.+...+...|. .+.++|+++.+.+--+.|....   +......+|+.+...                 
T Consensus        89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~  165 (467)
T PRK10458         89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ  165 (467)
T ss_pred             ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhhc
Confidence            5999999999999999988887 5678999999888888876321   112233444443210                 


Q ss_pred             -CCCeeEEEecccccccCh-----------------hHHHHHHHHHH---hcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024008          172 -TELFDLIFDYTFFCAIEP-----------------EMRAAWAQKIK---DFLKPDGELITLMFPISDHVGGPPYKVSVS  230 (274)
Q Consensus       172 -~~~fD~v~~~~~~~~~~~-----------------~~~~~~l~~l~---~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~  230 (274)
                       ...+|+++.......++.                 +.+..++-.+.   +..+|.  +++.+....-..  ....-+..
T Consensus       166 ~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s--~~~g~~f~  241 (467)
T PRK10458        166 HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKS--HDKGKTFR  241 (467)
T ss_pred             cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhc--ccccHHHH
Confidence             125798888766554421                 11111223333   334444  444443222111  01112467


Q ss_pred             HHHHHHhcCCCcEE
Q 024008          231 DYEEVLQPMGFQAI  244 (274)
Q Consensus       231 ~~~~~~~~~Gf~~~  244 (274)
                      .+.+.|++.||.+.
T Consensus       242 ~i~~~L~~lGY~v~  255 (467)
T PRK10458        242 IIMQTLDELGYDVA  255 (467)
T ss_pred             HHHHHHHHcCCeEE
Confidence            88888999999975

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.23  E-value=0.055  Score=47.78  Aligned_cols=64  Identities=13%  Similarity=-0.075  Sum_probs=55.0

Q ss_pred             CCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCC
Q 024008          105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFT  168 (274)
Q Consensus       105 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~  168 (274)
                      ...++..|.|+-||.|-.+..++..+++|++-|.++++++..+.+++.+.+.+. ++....|+..
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD  310 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence            456778999999999999999999999999999999999999999988776555 7776666544

>PRK11524 putative methyltransferase; Provisional

Probab=94.14  E-value=0.24  Score=42.19  Aligned_cols=80  Identities=18%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             ceEEEEcccCC---CCCCCCeeEEEecccccc------c----Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCC
Q 024008          158 FVSFLKADFFT---WCPTELFDLIFDYTFFCA------I----EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHV  220 (274)
Q Consensus       158 ~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~------~----~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~  220 (274)
                      +..++.+|..+   ..++++||+|++...+..      .    ..    +-...++..+.++|+|||.+++.....    
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~----   83 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE----   83 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch----
Confidence            45788899887   456789999999877642      0    00    123578899999999999999864111    


Q ss_pred             CCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          221 GGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                             .... ..++...||......-+
T Consensus        84 -------~~~~-~~~~~~~~f~~~~~iiW  104 (284)
T PRK11524         84 -------NMPF-IDLYCRKLFTIKSRIVW  104 (284)
T ss_pred             -------hhhH-HHHHHhcCcceEEEEEE
Confidence                   1112 34455568876664443

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.13  E-value=0.095  Score=46.69  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc-cCC----CCCCCCeeEE
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FFT----WCPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~----~~~~~~fD~v  178 (274)
                      .++.+||..|||. |..+..+++ .|. +++++|.+++..+.+++....    ..+.....+ +..    ......+|+|
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~l~~~~~~~~~D~v  258 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA----ETINFEEVDDVVEALRELTGGRGPDVC  258 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc----EEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence            3457999999988 888888877 666 699999999999988876311    112222221 111    2233468999


Q ss_pred             Eeccccc-----------cc--ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTFFC-----------AI--EPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~-----------~~--~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +..-.-.           +.  +..+....+..+.++++++|.++...
T Consensus       259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            8642110           00  00112346788999999999998764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=94.11  E-value=0.13  Score=43.84  Aligned_cols=108  Identities=22%  Similarity=0.269  Sum_probs=71.7

Q ss_pred             CeEEEEcCCcchhHHHhhC----------C------------CCeEEEEeCCh--HHHHHHHHHhhcC------------
Q 024008          110 GRALVPGCGTGYDVVAMAS----------P------------ERYVVGLEISD--IAIKKAEELSSSL------------  153 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----------~------------~~~v~~iD~s~--~~~~~a~~~~~~~------------  153 (274)
                      .+||.||.|.|.-..+++.          .            ...++.||+.+  .++......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            6999999999876655442          0            14899999864  5566655554433            


Q ss_pred             C----CCcceEEEEcccCCCCCC--------CCeeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          154 P----NAKFVSFLKADFFTWCPT--------ELFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       154 ~----~~~~v~~~~~d~~~~~~~--------~~fD~v~~~~~~~~~---~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      .    -.-+++|.+.|+.....+        ...++|....++.-+   ......+++.++...++||..++|++.+..
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS  246 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS  246 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence            0    112588999999874321        135666554444332   123456899999999999999999886654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.95  E-value=0.18  Score=44.33  Aligned_cols=97  Identities=19%  Similarity=0.177  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC----CCCCCCeeEEE
Q 024008          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT----WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~----~~~~~~fD~v~  179 (274)
                      ++.+|+=+|||. |..+..+++ .|+ +|+++|.+++.++.|++.....    .+..... +...    ......+|+++
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vi  243 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVI  243 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEE
Confidence            345899999997 444455555 554 8999999999999999855322    1111111 1111    11123699998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      -.--        ....+..+.+++++||.+++.....
T Consensus       244 e~~G--------~~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         244 EAVG--------SPPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             ECCC--------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence            4322        1346789999999999988766553

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.76  E-value=1.4  Score=35.58  Aligned_cols=84  Identities=12%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcch--hHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGY--DVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~--~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .+++.++..  +.....++++.|+-|.  .++.|+-    .|.++++|-.++......++.+...+.++-++|+.++..+
T Consensus        30 aEfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e  107 (218)
T PF07279_consen   30 AEFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE  107 (218)
T ss_pred             HHHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence            444444443  4445789999766443  2333332    6789999999998888888888877777778999988543


Q ss_pred             --CCCCCCeeEEEe
Q 024008          169 --WCPTELFDLIFD  180 (274)
Q Consensus       169 --~~~~~~fD~v~~  180 (274)
                        ...-...|+++.
T Consensus       108 ~~~~~~~~iDF~vV  121 (218)
T PF07279_consen  108 EVMPGLKGIDFVVV  121 (218)
T ss_pred             HHHhhccCCCEEEE
Confidence              233457888883

The function of this family is unknown.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=93.35  E-value=0.014  Score=43.12  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=57.9

Q ss_pred             CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC---C----CCCCCCeeEEEecccccccCh
Q 024008          118 GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF---T----WCPTELFDLIFDYTFFCAIEP  189 (274)
Q Consensus       118 G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~----~~~~~~fD~v~~~~~~~~~~~  189 (274)
                      |.|..+..+++ .|.+|+++|.++...+.+++.-.       ..++..+-.   +    ......+|+|+..-.     .
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga-------~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA-------DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S   68 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE-------SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc-------cccccccccccccccccccccccceEEEEecC-----c
Confidence            45778888887 78999999999999999887531       112222111   1    233357999984322     0


Q ss_pred             hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          190 EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       190 ~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                         ...++...++++++|.++++....
T Consensus        69 ---~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 ---GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             ---HHHHHHHHHHhccCCEEEEEEccC
Confidence               246788999999999999887655

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.33  E-value=0.37  Score=42.08  Aligned_cols=96  Identities=20%  Similarity=0.286  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~  182 (274)
                      .++.+||=.||| .|..+..+++ .|+ +|+++|.+++.++.+++.-..    .-+.....++.+ ....+.+|+|+..-
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~~~~g~~D~vid~~  243 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD----KLVNPQNDDLDHYKAEKGYFDVSFEVS  243 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc----EEecCCcccHHHHhccCCCCCEEEECC
Confidence            356788888874 2334445555 677 699999999999888764211    001111112211 11123589988431


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                        ..      ...+....++|++||.++....
T Consensus       244 --G~------~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        244 --GH------PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             --CC------HHHHHHHHHHhhcCCEEEEEcc
Confidence              11      1345678889999999988754

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=93.28  E-value=0.24  Score=42.86  Aligned_cols=96  Identities=23%  Similarity=0.318  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC---CCCCCCCeeEEEec
Q 024008          107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF---TWCPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~fD~v~~~  181 (274)
                      .++.+||..|+| .|..+..+++ .|.++++++.+++..+.+++.-    ...-+.....+..   .......+|+++..
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~D~vid~  239 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG----ADEVLNSLDDSPKDKKAAGLGGGFDVIFDF  239 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----CCEEEcCCCcCHHHHHHHhcCCCceEEEEC
Confidence            345688888876 4677777777 7889999999998888875532    1100000000100   11234579988843


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ...        ...+..+.++|+++|.++....
T Consensus       240 ~g~--------~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         240 VGT--------QPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             CCC--------HHHHHHHHHHhhcCCEEEEECC
Confidence            211        2356788999999999987654

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.19  E-value=4.7  Score=34.55  Aligned_cols=153  Identities=12%  Similarity=0.076  Sum_probs=92.8

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCC----CeEEEEeCChHHHHHHHHHhhcCC------------------
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE----RYVVGLEISDIAIKKAEELSSSLP------------------  154 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----~~v~~iD~s~~~~~~a~~~~~~~~------------------  154 (274)
                      .+..++.. ......|+.+|||.-.....+...+    ..++=||+++....+.........                  
T Consensus        77 ~v~~Fl~~-~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~  155 (335)
T KOG2918|consen   77 AVRAFLEQ-TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGT  155 (335)
T ss_pred             HHHHHHHh-cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcc
Confidence            34555554 2233689999999988888887754    367777877665555511111110                  


Q ss_pred             --CCcceEEEEcccCCC-----------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--
Q 024008          155 --NAKFVSFLKADFFTW-----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--  219 (274)
Q Consensus       155 --~~~~v~~~~~d~~~~-----------~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--  219 (274)
                        .+++..++.+|+.+.           ...+-.-++++-.++.+++++....++.-+.........++..-..+.+.  
T Consensus       156 ~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg  235 (335)
T KOG2918|consen  156 DLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFG  235 (335)
T ss_pred             eeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHH
Confidence              012344455555531           01223455666678888988877788888887777666666554444332  


Q ss_pred             -------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          220 -------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       220 -------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                                   ..|.....+.+...+-+.++||.-+.+.+--
T Consensus       236 ~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~  279 (335)
T KOG2918|consen  236 KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMN  279 (335)
T ss_pred             HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhHH
Confidence                         1112222488888889999999988877643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.16  E-value=1.1  Score=42.53  Aligned_cols=90  Identities=10%  Similarity=-0.030  Sum_probs=59.1

Q ss_pred             CeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024008          110 GRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~  180 (274)
                      .+|+=+|+|.  .+..+    .+.+..++.+|.+++.++.+++.        ....+.+|..+.     ..-++.|++++
T Consensus       401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~  470 (601)
T PRK03659        401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVI  470 (601)
T ss_pred             CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence            5677776654  44444    34788999999999999988652        266899999872     22346787774


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .     .+++.....+-...+.+.|...++....
T Consensus       471 ~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        471 T-----CNEPEDTMKIVELCQQHFPHLHILARAR  499 (601)
T ss_pred             E-----eCCHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence            2     2333333344455666788888887663

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=93.02  E-value=0.19  Score=45.12  Aligned_cols=108  Identities=12%  Similarity=-0.023  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc--cCC----CCCCCCeeE
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFT----WCPTELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~----~~~~~~fD~  177 (274)
                      .+..++|+|.|.|.-...+..  .  ...++.||.+..+......+.....  ..-..+...  +..    ....+.||+
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~--~~g~~~v~~~~~~r~~~pi~~~~~yDl  277 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS--HIGEPIVRKLVFHRQRLPIDIKNGYDL  277 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh--hcCchhccccchhcccCCCCcccceee
Confidence            346888999887765544433  2  3479999999999999888876511  111111111  111    233467999


Q ss_pred             EEecccccccCh-hHH-HHHHHHHHhcccCCcEEEEEEccCC
Q 024008          178 IFDYTFFCAIEP-EMR-AAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       178 v~~~~~~~~~~~-~~~-~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      |++.+.++++.. ..+ ...-..+.+...+|+.++++.-+..
T Consensus       278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~  319 (491)
T KOG2539|consen  278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT  319 (491)
T ss_pred             EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence            999999988743 222 2333556677788999988876543

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.86  E-value=0.44  Score=39.49  Aligned_cols=96  Identities=20%  Similarity=0.225  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~  181 (274)
                      .++.+||..|+|. |..+..+++ .|.++++++.+++..+.++..-...    -+.....+...   ....+.+|+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~d~vi~~  208 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH----VIDYKEEDLEEELRLTGGGGADVVIDA  208 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce----eccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence            4567999999985 666666666 7889999999988877775542110    01111111100   1123579999853


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ..-        ...+..+.+.++++|.++....
T Consensus       209 ~~~--------~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         209 VGG--------PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             CCC--------HHHHHHHHHhcccCCEEEEEcc
Confidence            221        0245677888999999887653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.80  E-value=0.57  Score=41.11  Aligned_cols=96  Identities=27%  Similarity=0.239  Sum_probs=56.3

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeC---ChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEI---SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~---s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  181 (274)
                      .++.+||=+|+|. |..+..+++ .|+++++++.   ++...+.+++.-..     .+.....+..+......+|+|+..
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-----~v~~~~~~~~~~~~~~~~d~vid~  245 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-----YVNSSKTPVAEVKLVGEFDLIIEA  245 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-----EecCCccchhhhhhcCCCCEEEEC
Confidence            3567898888753 444555555 7789999986   67777777643211     111111111110112468988843


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      -.     .   ...+....+.|++||.+++....
T Consensus       246 ~g-----~---~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         246 TG-----V---PPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             cC-----C---HHHHHHHHHHccCCcEEEEEecC
Confidence            21     0   12567888999999998876543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=91.68  E-value=0.48  Score=34.88  Aligned_cols=89  Identities=18%  Similarity=0.100  Sum_probs=46.9

Q ss_pred             CCeEEEEcCCcchhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024008          109 KGRALVPGCGTGYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~-~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~  185 (274)
                      .++|+|+|-|.=... ..|.+.|..|+++|+.+.       .++     ..++++..|++++..  -...|+|++...-.
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~   81 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIRPPP   81 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--T
T ss_pred             CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-----cCcceeeecccCCCHHHhcCCcEEEEeCCCh
Confidence            459999988876544 455558899999999887       222     237899999998543  35789999765433


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                           ++...+-++.+.+  |.-+++..++.
T Consensus        82 -----El~~~il~lA~~v--~adlii~pL~~  105 (127)
T PF03686_consen   82 -----ELQPPILELAKKV--GADLIIRPLGG  105 (127)
T ss_dssp             -----TSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred             -----HHhHHHHHHHHHh--CCCEEEECCCC
Confidence                 2233344444433  45566655443

; PDB: 2K4M_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=91.67  E-value=0.51  Score=41.33  Aligned_cols=40  Identities=20%  Similarity=0.173  Sum_probs=34.2

Q ss_pred             CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHH
Q 024008          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEEL  149 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~  149 (274)
                      ..|+|+|.|.|+++..+.- -|..|.+||-|....+.|++.
T Consensus       155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            6899999999999998876 688999999997777776553

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=91.60  E-value=2.4  Score=38.49  Aligned_cols=65  Identities=17%  Similarity=0.012  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEE
Q 024008          108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLI  178 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v  178 (274)
                      ...+++=+|+  |..+..+++    .+..++.+|.+++.++.+++..      ..+.++.+|..+.     ..-..+|.|
T Consensus       230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~v  301 (453)
T PRK09496        230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAF  301 (453)
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEE
Confidence            3478888888  445544444    6889999999999888877654      2367888998762     223578888


Q ss_pred             Ee
Q 024008          179 FD  180 (274)
Q Consensus       179 ~~  180 (274)
                      ++
T Consensus       302 i~  303 (453)
T PRK09496        302 IA  303 (453)
T ss_pred             EE
Confidence            75

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.26  E-value=1  Score=42.37  Aligned_cols=107  Identities=15%  Similarity=0.070  Sum_probs=64.4

Q ss_pred             CeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024008          110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~  180 (274)
                      .+++=+|||.  .+..++    +.+..++.+|.+++.++.+++.        ....+.+|..+.     ..-+++|.+++
T Consensus       418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL  487 (558)
T ss_pred             CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence            5777777765  444443    4788999999999988888642        267899999872     22357886653


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      .     .+++.....+-...+...|+..++...              +..+-.+.+++.|-+.+-
T Consensus       488 ~-----~~~~~~~~~iv~~~~~~~~~~~iiar~--------------~~~~~~~~l~~~Gad~vv  533 (558)
T PRK10669        488 T-----IPNGYEAGEIVASAREKRPDIEIIARA--------------HYDDEVAYITERGANQVV  533 (558)
T ss_pred             E-----cCChHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHcCCCEEE
Confidence            2     222222222223334456777776654              122344456677766544

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.70  E-value=2.7  Score=40.06  Aligned_cols=92  Identities=12%  Similarity=0.081  Sum_probs=59.6

Q ss_pred             CCeEEEEcCCcchh-H-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024008          109 KGRALVPGCGTGYD-V-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       109 ~~~vLDiG~G~G~~-~-~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~  181 (274)
                      ..+|+=+|||.=.. . ..+.+.+..++.+|.+++.++.+++.        ....+.+|..+.     ..-++.|++++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence            36788888875322 2 23444788999999999999988652        256899999872     223467877742


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                           .++++....+-...+.+.|+-.++...
T Consensus       472 -----~~d~~~n~~i~~~ar~~~p~~~iiaRa  498 (621)
T PRK03562        472 -----IDDPQTSLQLVELVKEHFPHLQIIARA  498 (621)
T ss_pred             -----eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                 233333344445556667777766654

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=90.68  E-value=2.6  Score=39.10  Aligned_cols=107  Identities=14%  Similarity=0.136  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCC-C--CCCCCeeE
Q 024008          108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFT-W--CPTELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~-~--~~~~~fD~  177 (274)
                      +...|.|.-||+|..+....+      ....++|.+..+.+...++.+..-.+.. +......+|-.. +  ....+||.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence            446899999999999865432      1236999999999999999885433321 123333444333 1  12356888


Q ss_pred             EEecccccc-c-----C---------------h--hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          178 IFDYTFFCA-I-----E---------------P--EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~-~-----~---------------~--~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+++..+.. +     +               +  +.-..++.++...|++||...++..
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~  356 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF  356 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence            888765432 1     0               0  1124677888999999998665553

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=90.32  E-value=1  Score=38.35  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=53.7

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      ..+...+.+.+.....++..|||.-+|+|..+......+..++|+|++++.++.+.++....
T Consensus       206 ~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         206 QKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            44566677777776777899999999999999999999999999999999999999988654

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.87  E-value=1.3  Score=38.10  Aligned_cols=132  Identities=10%  Similarity=0.037  Sum_probs=78.3

Q ss_pred             CCCCeEEEEcCCcc-hhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC----CCCCCC
Q 024008          107 LPKGRALVPGCGTG-YDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT----WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G-~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~----~~~~~~  174 (274)
                      ..+.+||-+|+|.= ..+...++ -|+ +|+.+|+++..++.|++.- ..    .+.....     ++.+    ......
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~G-a~----~~~~~~~~~~~~~~~~~v~~~~g~~~  242 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFG-AT----VTDPSSHKSSPQELAELVEKALGKKQ  242 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhC-Ce----EEeeccccccHHHHHHHHHhhccccC
Confidence            45689999999974 44444455 566 9999999999999999832 11    1111111     1111    222345


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC------------CCcc--c-CHHHHHHHHhcC
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG------------PPYK--V-SVSDYEEVLQPM  239 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~------------~~~~--~-~~~~~~~~~~~~  239 (274)
                      +|+.+...-++        ..++.....++.||.+++..++.......            ..|.  . ......+++++-
T Consensus       243 ~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~ai~li~sG  314 (354)
T KOG0024|consen  243 PDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTAIELVSSG  314 (354)
T ss_pred             CCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHHHHHHHHHcC
Confidence            88888543333        34566788899999988888765432110            1111  1 456666777764


Q ss_pred             CCcEEEEeeccc
Q 024008          240 GFQAISIVDNKL  251 (274)
Q Consensus       240 Gf~~~~~~~~~~  251 (274)
                      -..+........
T Consensus       315 ki~~k~lIT~r~  326 (354)
T KOG0024|consen  315 KIDVKPLITHRY  326 (354)
T ss_pred             CcCchhheeccc
Confidence            455544444333

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=89.87  E-value=0.44  Score=41.90  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=56.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~  179 (274)
                      .++.+||=.|||. |..+..+++ .|+ +|+++|.++...+.+++.-.    ..-+.....|..+    ......+|+|+
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~i~~~~~~~g~d~vi  250 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA----THTVNSSGTDPVEAIRALTGGFGADVVI  250 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence            3567888888743 344455555 677 59999999998888865321    0001111112111    12224689988


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ..-  ..      ...+....+++++||++++...
T Consensus       251 d~~--g~------~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       251 DAV--GR------PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             ECC--CC------HHHHHHHHHHhccCCEEEEECC
Confidence            421  11      1245667789999999887654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=89.22  E-value=3.1  Score=32.86  Aligned_cols=89  Identities=13%  Similarity=0.112  Sum_probs=55.9

Q ss_pred             CeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC----------CCCCCe
Q 024008          110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW----------CPTELF  175 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----------~~~~~f  175 (274)
                      ..|+.+|||-=.....+..+  +.+++-+|. |++++.-++.++..+.  ..+.+++.+|+.+.          ...+..
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p  158 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP  158 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence            48999999887777777663  557777776 6666666666655421  12356899999861          123556


Q ss_pred             eEEEecccccccChhHHHHHHHHH
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKI  199 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l  199 (274)
                      -++++-+++.|++++....+++.+
T Consensus       159 tl~i~Egvl~Yl~~~~~~~ll~~i  182 (183)
T PF04072_consen  159 TLFIAEGVLMYLSPEQVDALLRAI  182 (183)
T ss_dssp             EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred             eEEEEcchhhcCCHHHHHHHHHHh
Confidence            678888899999887776666554

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=89.20  E-value=2.3  Score=37.25  Aligned_cols=95  Identities=17%  Similarity=0.105  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---CCCCCCeeEEE
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~---~~~~~~fD~v~  179 (274)
                      .++.+||=.|+  |.|..+..+++ .|+++++++.+++..+.+++.+...   .-+..... ++.+   ....+.+|+|+
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~v~  233 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD---EAFNYKEEPDLDAALKRYFPEGIDIYF  233 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC---EEEECCCcccHHHHHHHHCCCCcEEEE
Confidence            45678988887  47777777777 7889999999888877776333111   11111111 2211   11124689988


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..     ..    ...+....++|++||.++++.
T Consensus       234 d~-----vG----~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        234 DN-----VG----GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             EC-----CC----HHHHHHHHHHhccCCEEEEEC
Confidence            42     11    124577889999999988764

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=88.78  E-value=1.2  Score=39.21  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=70.5

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHH-------hhcCCC-CcceEEEEcc
Q 024008           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEEL-------SSSLPN-AKFVSFLKAD  165 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~-------~~~~~~-~~~v~~~~~d  165 (274)
                      .+..+.++.. .+++.-.|+|+|.|.....++. .+ ..-+|+++....-..+..+       ..-.|. -..++.+.++
T Consensus       180 ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gs  259 (419)
T KOG3924|consen  180 QLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGS  259 (419)
T ss_pred             HHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccc
Confidence            3444555543 4557889999999999887776 22 3566777654333333222       111222 2457888888


Q ss_pred             cCCC----CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          166 FFTW----CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       166 ~~~~----~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +...    .-....++|+.+++.-  +++...+ +.++..-+++|.+++...
T Consensus       260 f~~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~gtrIiS~~  308 (419)
T KOG3924|consen  260 FLDPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCKDGTRIISSK  308 (419)
T ss_pred             cCCHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCCCcceEeccc
Confidence            8762    2235678888887643  3333333 458888999999988644

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=88.63  E-value=2.1  Score=37.34  Aligned_cols=97  Identities=21%  Similarity=0.266  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~  179 (274)
                      .++.+||=.|+  |.|..+.+|++ .|++++++--+++..+.+++.-..    .-+++...|+.+    ......+|+|+
T Consensus       141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd----~vi~y~~~~~~~~v~~~t~g~gvDvv~  216 (326)
T COG0604         141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD----HVINYREEDFVEQVRELTGGKGVDVVL  216 (326)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC----EEEcCCcccHHHHHHHHcCCCCceEEE
Confidence            34678988884  55677788888 676877777777766655554322    224444555443    22234699998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      ..--         ...+.+..+.|+++|.++......
T Consensus       217 D~vG---------~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         217 DTVG---------GDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             ECCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence            4311         234577889999999998876544

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=88.43  E-value=0.75  Score=40.66  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~  180 (274)
                      .++.+||=.|+|. |..+..+++ .|+ +|+++|.+++..+.+++.-..    .-+.....|..+   ....+.+|+|+.
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~i~~~~~~g~d~vid  265 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT----ATVNAGDPNAVEQVRELTGGGVDYAFE  265 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc----eEeCCCchhHHHHHHHHhCCCCCEEEE
Confidence            3456888788642 334445555 687 699999999998888653211    001111112111   011236899984


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .-  ..      ...+....++++++|.++....
T Consensus       266 ~~--G~------~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         266 MA--GS------VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CC--CC------hHHHHHHHHHHhcCCEEEEEcc
Confidence            31  11      1345677888999999887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.43  E-value=7.2  Score=33.27  Aligned_cols=59  Identities=14%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..+..||==|.|+|.   .+..+++.|++++..|+++...+...+.....|   ++....+|+.+
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~   97 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISD   97 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCC
Confidence            446788988988883   467778899999999999988888777776553   57788888765

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=88.36  E-value=4.9  Score=34.87  Aligned_cols=90  Identities=18%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+||=.|+| .|..+..+++ .|+++++++.+++..+.+++.-...       ++  |.... ..+.+|+++.....
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-------vi--~~~~~-~~~~~d~~i~~~~~  233 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-------AG--GAYDT-PPEPLDAAILFAPA  233 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-------ec--ccccc-CcccceEEEECCCc
Confidence            456789988864 3334455555 7889999999998888887643211       11  11111 12357876532211


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                              ...+....++|++||.+++...
T Consensus       234 --------~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       234 --------GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             --------HHHHHHHHHhhCCCcEEEEEec
Confidence                    1356788899999999987664

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=88.02  E-value=2.1  Score=36.95  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---CCCCCCeeEEE
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~---~~~~~~fD~v~  179 (274)
                      .++.+||=.|+  |.|..+..+++ .|+++++++-+++..+.+++.-    ...-+..... +..+   ....+.+|+|+
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lG----a~~vi~~~~~~~~~~~~~~~~~~gvdvv~  212 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLG----FDVAFNYKTVKSLEETLKKASPDGYDCYF  212 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CCEEEeccccccHHHHHHHhCCCCeEEEE
Confidence            34578888874  57777777777 7889999999988888876531    1110111111 1111   11224699998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..     ..    ...+....++|+++|.++...
T Consensus       213 d~-----~G----~~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       213 DN-----VG----GEFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             EC-----CC----HHHHHHHHHHhCcCcEEEEec
Confidence            42     11    123477889999999998754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=87.87  E-value=1.4  Score=33.60  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=24.1

Q ss_pred             EEcCCcc--hhHHHhh----CCCCeEEEEeCChHHHHHHHHH
Q 024008          114 VPGCGTG--YDVVAMA----SPERYVVGLEISDIAIKKAEEL  149 (274)
Q Consensus       114 DiG~G~G--~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~  149 (274)
                      |||++.|  .....+.    .++.+++++|++|..++..+.+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5554442    2577999999999999999888

; PDB: 2PY6_A.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=87.62  E-value=1.5  Score=38.12  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc---cCCCCCCCCeeEEEe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~fD~v~~  180 (274)
                      .++.+||=.|+|. |..+..+++ .|++ +++++.+++..+.+++.-..    .-+.....+   +.+......+|+|+.
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~~~d~vid  237 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD----FVINSGQDDVQEIRELTSGAGADVAIE  237 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEEcCCcchHHHHHHHhCCCCCCEEEE
Confidence            4567888887642 233344444 7777 99999999888887654211    101111111   111122346999984


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ...    .    ...+....+.|+++|.+++...
T Consensus       238 ~~g----~----~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         238 CSG----N----TAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCC----C----HHHHHHHHHHhhcCCEEEEEcC
Confidence            311    0    1234667788999999887654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.53  E-value=11  Score=30.64  Aligned_cols=103  Identities=10%  Similarity=-0.041  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024008          108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~  172 (274)
                      ++++||-.|++.| .+.    .+++.|++|++++-+++............   .++.++.+|+.+..           .-
T Consensus         4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4568899988643 333    33448999999999887666554443322   25788899987621           01


Q ss_pred             CCeeEEEecccccccC-h---hH-----------HHHHHHHHHhcccCCcEEEEEEc
Q 024008          173 ELFDLIFDYTFFCAIE-P---EM-----------RAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~-~---~~-----------~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +.+|.++.+....... .   +.           ...+++.+...++++|.+++...
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  136 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS  136 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence            3468777654321110 0   00           11235566666777887766553

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=87.49  E-value=0.98  Score=39.15  Aligned_cols=95  Identities=21%  Similarity=0.264  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~  180 (274)
                      .++.+||-.|+|. |..+..+++ .|.+++++.-+++..+.+++..    ...-+.....++..    ..+...+|+++.
T Consensus       158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g----~~~v~~~~~~~~~~~l~~~~~~~~vd~vld  233 (337)
T cd08261         158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG----ADDTINVGDEDVAARLRELTDGEGADVVID  233 (337)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC----CCEEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence            3457888888764 666667766 7889999988888887775432    11111111112111    223356899985


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ...    .    ...+..+.+.|+++|.++...
T Consensus       234 ~~g----~----~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         234 ATG----N----PASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CCC----C----HHHHHHHHHHHhcCCEEEEEc
Confidence            311    1    134577888999999987654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=87.43  E-value=3  Score=37.53  Aligned_cols=97  Identities=13%  Similarity=0.058  Sum_probs=59.0

Q ss_pred             HHHHHhcC--CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024008           98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        98 ~~~~~~~~--~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  173 (274)
                      +..+++..  ..++.+|+=+|+|. |......++ .|++|+++|.++.....|+..    |    ....  +..+..  .
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G----~~~~--~~~e~v--~  256 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----G----YEVM--TMEEAV--K  256 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----C----CEEc--cHHHHH--c
Confidence            34444432  35788999999996 433343444 788999999999888777653    2    1111  111111  3


Q ss_pred             CeeEEEecccccccChhHHHHHHH-HHHhcccCCcEEEEEEc
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQ-KIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~-~l~~~L~~gG~l~~~~~  214 (274)
                      .+|+|+....       . ...+. ...+.+++||+++....
T Consensus       257 ~aDVVI~atG-------~-~~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         257 EGDIFVTTTG-------N-KDIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             CCCEEEECCC-------C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence            4799985321       1 12344 45889999999876653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=87.08  E-value=4.3  Score=35.11  Aligned_cols=95  Identities=22%  Similarity=0.346  Sum_probs=57.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~  182 (274)
                      .++.+||-.|||. |..+..+++ .|. ++++++.++...+.+++.-    ...-+.....++.... ..+.+|+++...
T Consensus       164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g----~~~vi~~~~~~~~~~~~~~~~vd~vld~~  239 (339)
T cd08232         164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMG----ADETVNLARDPLAAYAADKGDFDVVFEAS  239 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC----CCEEEcCCchhhhhhhccCCCccEEEECC
Confidence            3667888888765 556666666 687 7999999888777665432    1010111111111111 124589998532


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..        ...+..+.+.|+++|.++...
T Consensus       240 g~--------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         240 GA--------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             CC--------HHHHHHHHHHHhcCCEEEEEe
Confidence            21        124577889999999988764

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=86.91  E-value=1.7  Score=39.37  Aligned_cols=106  Identities=19%  Similarity=0.151  Sum_probs=70.6

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--------CCCCCCeeEE
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WCPTELFDLI  178 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--------~~~~~~fD~v  178 (274)
                      +..+|-+|-|.|.+...+..  +..++++++++|.+++.|+........ .+......|...        ...+..||++
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl  374 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVL  374 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence            46889999999999887765  557999999999999999988754321 122333333322        1234578988


Q ss_pred             Eec---cccccc--Chh--HHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          179 FDY---TFFCAI--EPE--MRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       179 ~~~---~~~~~~--~~~--~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +.-   .-.+.+  ++.  ....++..+...|.|.|.+++..-.
T Consensus       375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~  418 (482)
T KOG2352|consen  375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT  418 (482)
T ss_pred             EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence            752   012222  222  2367889999999999998775533

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=86.80  E-value=1.9  Score=37.00  Aligned_cols=86  Identities=16%  Similarity=0.118  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          108 PKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ++.+||=+||| .|..+..+++ .|++ ++++|.+++.++.+.....       +     |..+. ....+|+|+..-- 
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~-------i-----~~~~~-~~~g~Dvvid~~G-  209 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV-------L-----DPEKD-PRRDYRAIYDASG-  209 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc-------c-----Chhhc-cCCCCCEEEECCC-
Confidence            45678888865 3445566665 6775 7778988877766653210       1     11100 1246899884311 


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                       .      ...++...++++++|++++...
T Consensus       210 -~------~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       210 -D------PSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             -C------HHHHHHHHHhhhcCcEEEEEee
Confidence             1      2345778889999999987654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=86.75  E-value=1.2  Score=37.59  Aligned_cols=96  Identities=19%  Similarity=0.106  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEE-cc-cCCCCCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK-AD-FFTWCPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d-~~~~~~~~~fD~v~~~  181 (274)
                      .++.+||=+|+|. |..+..+++ .|++ |+++|.+++..+.+++.-...    -+.... .+ +........+|+|+..
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g~d~vid~  194 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRGVDVALEF  194 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCCCCEEEEC
Confidence            3567888887742 333344554 6775 999999998888887642111    011000 00 0111123468998842


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      -.    .    ...+....++++++|.++....
T Consensus       195 ~G----~----~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       195 SG----A----TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CC----C----hHHHHHHHHHhcCCCEEEEecc
Confidence            11    0    2346778899999999987653

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK05867 short chain dehydrogenase; Provisional

Probab=86.58  E-value=16  Score=30.06  Aligned_cols=75  Identities=19%  Similarity=0.043  Sum_probs=49.3

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ..++++|-.|++.|.-   +..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+...           .
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3467899999866532   34555589999999998887776666554433  357778888865210           1


Q ss_pred             CCeeEEEeccc
Q 024008          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~fD~v~~~~~  183 (274)
                      ++.|+++.+..
T Consensus        85 g~id~lv~~ag   95 (253)
T PRK05867         85 GGIDIAVCNAG   95 (253)
T ss_pred             CCCCEEEECCC
Confidence            35677776544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.20  E-value=18  Score=32.82  Aligned_cols=89  Identities=15%  Similarity=0.105  Sum_probs=55.6

Q ss_pred             eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024008          111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~  181 (274)
                      +|+=+|+  |..+..+++    .|..++++|.+++.++.+++..       .+.++.+|..+.     ..-..+|.|++.
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            4666766  667665555    6889999999999887776532       367888888751     123568888753


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .     +.+.....+....+.+.|.-.+++..
T Consensus        73 ~-----~~~~~n~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         73 T-----DSDETNMVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             c-----CChHHHHHHHHHHHHhcCCCeEEEEE
Confidence            2     22233444455556665555555543

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=86.14  E-value=2.1  Score=37.07  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEe
Q 024008          108 PKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~  180 (274)
                      ++.+||-.|+| .|..+..+++ .|. .+++++.++...+.+++.-    ...-+.....++..    ....+.+|+++.
T Consensus       167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g----~~~vi~~~~~~~~~~i~~~~~~~~~d~vld  242 (347)
T cd05278         167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG----ATDIINPKNGDIVEQILELTGGRGVDCVIE  242 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC----CcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence            45688877765 3566666666 675 7889988887777666432    10101111111111    223356999884


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ...-        ...+....+.|+++|.++...
T Consensus       243 ~~g~--------~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         243 AVGF--------EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             ccCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence            3111        135677888999999988653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2

Probab=85.78  E-value=5.9  Score=27.76  Aligned_cols=70  Identities=14%  Similarity=0.114  Sum_probs=45.6

Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC---------------CCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS---------------DHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      .++.|-+.++..+++.++....+  |.+++..-+.+               .......+....+++.+.+.++||++...
T Consensus         3 DvLIHYp~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r~   80 (97)
T PF07109_consen    3 DVLIHYPAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGRT   80 (97)
T ss_pred             ceEeccCHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeeec
Confidence            44556677777888888887655  45554432211               11112234568999999999999999888


Q ss_pred             eeccccc
Q 024008          247 VDNKLAI  253 (274)
Q Consensus       247 ~~~~~~~  253 (274)
                      +....++
T Consensus        81 ~ris~gF   87 (97)
T PF07109_consen   81 ERISSGF   87 (97)
T ss_pred             ccccCcC
Confidence            7765544

1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process

>cd08293 PTGR2 Prostaglandin reductase

Probab=85.73  E-value=2.8  Score=36.38  Aligned_cols=91  Identities=16%  Similarity=0.161  Sum_probs=56.6

Q ss_pred             CeEEEEcC--CcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024008          110 GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY  181 (274)
Q Consensus       110 ~~vLDiG~--G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~  181 (274)
                      .+||=.|+  |.|..+..+++ .|+ +|++++-+++..+.+++.+..   ..-+.....++.+    .. .+.+|+|+..
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~~-~~gvd~vid~  231 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF---DAAINYKTDNVAERLRELC-PEGVDVYFDN  231 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC---cEEEECCCCCHHHHHHHHC-CCCceEEEEC
Confidence            68888875  57777777777 788 799999998888777664321   1111111112211    12 2569999842


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      -  .   ..    .+....++|+++|.++...
T Consensus       232 ~--g---~~----~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         232 V--G---GE----ISDTVISQMNENSHIILCG  254 (345)
T ss_pred             C--C---cH----HHHHHHHHhccCCEEEEEe
Confidence            1  1   11    2467888999999988654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=85.43  E-value=1.7  Score=37.73  Aligned_cols=95  Identities=17%  Similarity=0.202  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCCCCCCCCeeEEEe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFTWCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~fD~v~~  180 (274)
                      .++.+||-.|+|. |..+..+++ .|.+ +++++-++...+.+++.    +...-+....   ..+........+|+++.
T Consensus       158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vld  233 (343)
T cd08236         158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GADDTINPKEEDVEKVRELTEGRGADLVIE  233 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCEEecCccccHHHHHHHhCCCCCCEEEE
Confidence            3456888888655 555666666 6776 99999888777766432    1101011111   11111223345999985


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..     ..   ...+..+.++|+++|.++...
T Consensus       234 ~~-----g~---~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         234 AA-----GS---PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CC-----CC---HHHHHHHHHHhhcCCEEEEEc
Confidence            31     11   134577889999999987664

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK05872 short chain dehydrogenase; Provisional

Probab=85.19  E-value=16  Score=31.01  Aligned_cols=75  Identities=11%  Similarity=0.077  Sum_probs=48.4

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024008          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~  172 (274)
                      ..++++|-.|++.|.-   +..+++.|++|+.++.+++.++...+....   ..++..+.+|+.+..           ..
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3467888888665422   344555899999999988877665554432   134556668887621           11


Q ss_pred             CCeeEEEecccc
Q 024008          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~fD~v~~~~~~  184 (274)
                      ++.|+++.+...
T Consensus        84 g~id~vI~nAG~   95 (296)
T PRK05872         84 GGIDVVVANAGI   95 (296)
T ss_pred             CCCCEEEECCCc
Confidence            568999987654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=85.16  E-value=4.4  Score=35.41  Aligned_cols=97  Identities=14%  Similarity=0.161  Sum_probs=55.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCee-
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD-  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~----~~~~~~fD-  176 (274)
                      .++.+||-.|+|. |..+..+++ .|.+++++|.+++.++.+++.-. .   .-+.....   |+.+    ......+| 
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga-~---~~i~~~~~~~~~~~~~~~~~t~~~g~d~  240 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA-D---LTLNPKDKSAREVKKLIKAFAKARGLRS  240 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC-c---eEecCccccHHHHHHHHHhhcccCCCCC
Confidence            4567999999854 555556665 67899999999998888865321 0   11111111   1111    11112354 


Q ss_pred             ---EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          177 ---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       177 ---~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                         .|+..     ...   ...+....++|++||++++....
T Consensus       241 ~~d~v~d~-----~g~---~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       241 TGWKIFEC-----SGS---KPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             CcCEEEEC-----CCC---hHHHHHHHHHHhcCCeEEEECcC
Confidence               45421     111   13456678889999999876543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.01  E-value=19  Score=29.28  Aligned_cols=73  Identities=10%  Similarity=-0.009  Sum_probs=47.1

Q ss_pred             CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ++.++|-.|++.| .+.    .+++.|.+++.++.++..+..+.+.....+  .++.++..|+.+...           .
T Consensus         4 ~~~~~lItG~~g~-iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (253)
T PRK08217          4 KDKVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4568888886443 333    344478899999998876666555544332  457888889865210           1


Q ss_pred             CCeeEEEeccc
Q 024008          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~fD~v~~~~~  183 (274)
                      ++.|.|+.+..
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            46899987643

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.98  E-value=18  Score=29.96  Aligned_cols=75  Identities=21%  Similarity=0.124  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcCCcc-hhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024008          107 LPKGRALVPGCGTG-YDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G-~~~----~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------  170 (274)
                      ..++.+|-.|+++| ..+    ..+++.|++|+.++.+....+...+.....   ..+.++.+|+.+..           
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~   84 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAE   84 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHH
Confidence            34578899997652 333    445558999999888765433333332221   12456778887621           


Q ss_pred             CCCCeeEEEecccc
Q 024008          171 PTELFDLIFDYTFF  184 (274)
Q Consensus       171 ~~~~fD~v~~~~~~  184 (274)
                      ..++.|+++.+..+
T Consensus        85 ~~g~ld~lv~nAg~   98 (258)
T PRK07533         85 EWGRLDFLLHSIAF   98 (258)
T ss_pred             HcCCCCEEEEcCcc
Confidence            12578999987543

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=84.55  E-value=2.6  Score=36.18  Aligned_cols=94  Identities=16%  Similarity=0.132  Sum_probs=58.2

Q ss_pred             CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEe
Q 024008          107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~  180 (274)
                      .++.+||=.|  .|.|..+..+++ .|.++++++-+++..+.+++.-    ...-+.....|+..   ....+.+|+|+.
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~G----a~~vi~~~~~~~~~~v~~~~~~gvd~vld  217 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELG----FDAVFNYKTVSLEEALKEAAPDGIDCYFD  217 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CCEEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence            3457888777  466677777777 7889999999888888886631    11111111112211   111256898884


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .  ..       ...+....++|+++|.++...
T Consensus       218 ~--~g-------~~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         218 N--VG-------GEFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             C--CC-------HHHHHHHHHhhccCCEEEEEc
Confidence            2  11       134578889999999988654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=84.50  E-value=6.6  Score=33.26  Aligned_cols=84  Identities=17%  Similarity=0.142  Sum_probs=51.1

Q ss_pred             eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024008          111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       111 ~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  188 (274)
                      +|.=||+|.  |.++..|++.|.+|+++|.+++.++.+.+.-    .   +.....+. +  .-...|+|+..     ++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g----~---~~~~~~~~-~--~~~~aDlVila-----vp   66 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERG----L---VDEASTDL-S--LLKDCDLVILA-----LP   66 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC----C---cccccCCH-h--HhcCCCEEEEc-----CC
Confidence            466677774  3455566668889999999998887775431    1   11111111 1  12456888854     33


Q ss_pred             hhHHHHHHHHHHhcccCCcEE
Q 024008          189 PEMRAAWAQKIKDFLKPDGEL  209 (274)
Q Consensus       189 ~~~~~~~l~~l~~~L~~gG~l  209 (274)
                      +.....+++++...++++.++
T Consensus        67 ~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         67 IGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             HHHHHHHHHHHHHhCCCCcEE
Confidence            444556778888888776544

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=84.34  E-value=3.8  Score=33.96  Aligned_cols=74  Identities=18%  Similarity=0.054  Sum_probs=49.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008          107 LPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  171 (274)
                      .+++++|=.|+ +|..+..++    +.|++|+.++-++..++.........+  .++.++.+|+.+...           
T Consensus        10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~   86 (259)
T PRK08213         10 LSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER   86 (259)
T ss_pred             cCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45678888885 455554444    478999999998877766665544332  457889999986211           


Q ss_pred             CCCeeEEEeccc
Q 024008          172 TELFDLIFDYTF  183 (274)
Q Consensus       172 ~~~fD~v~~~~~  183 (274)
                      .++.|.|+.+..
T Consensus        87 ~~~id~vi~~ag   98 (259)
T PRK08213         87 FGHVDILVNNAG   98 (259)
T ss_pred             hCCCCEEEECCC
Confidence            146899987754

>PRK08324 short chain dehydrogenase; Validated

Probab=84.31  E-value=13  Score=35.84  Aligned_cols=73  Identities=16%  Similarity=0.062  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCcc--hh-HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008          108 PKGRALVPGCGTG--YD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G--~~-~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~  173 (274)
                      ++++||-.|++.|  .. +..+++.|++|+++|.++...+.+...+...   .++.++.+|+.+..           ..+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3467888886433  22 2344458899999999988776665554332   35888899987621           124


Q ss_pred             CeeEEEeccc
Q 024008          174 LFDLIFDYTF  183 (274)
Q Consensus       174 ~fD~v~~~~~  183 (274)
                      ++|+|+.+..
T Consensus       498 ~iDvvI~~AG  507 (681)
T PRK08324        498 GVDIVVSNAG  507 (681)
T ss_pred             CCCEEEECCC
Confidence            6899987754

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=84.29  E-value=3.8  Score=35.25  Aligned_cols=96  Identities=15%  Similarity=0.153  Sum_probs=64.2

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024008          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~  184 (274)
                      ++.+|.-+|.|. |..+..++- .|+.|+-+|+|.+.+......+.     .++...-.+..+. ..-.+.|+++..-.+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLI  241 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLI  241 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence            346788888875 555555554 78999999999988777766552     3466655555442 223578999864333


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      ..-  ....-+.+++.+.++||+.++
T Consensus       242 pga--kaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         242 PGA--KAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             cCC--CCceehhHHHHHhcCCCcEEE
Confidence            322  223456788999999999887

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=84.02  E-value=6.5  Score=33.82  Aligned_cols=93  Identities=15%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEE
Q 024008          107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~v  178 (274)
                      .++.+||-.|+| .|..+..+++ .|.+ +++++.+++..+.+++..    ..   .++..+-..     ......+|++
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g----~~---~~~~~~~~~~~~~~~~~~~~vd~v  230 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLG----AT---ETVDPSREDPEAQKEDNPYGFDVV  230 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC----Ce---EEecCCCCCHHHHHHhcCCCCcEE
Confidence            355788888865 2555555665 6776 899999988887775432    11   122211111     1133568999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +....    .    ...+..+.++|+++|.++....
T Consensus       231 ~~~~~----~----~~~~~~~~~~l~~~G~~v~~g~  258 (334)
T cd08234         231 IEATG----V----PKTLEQAIEYARRGGTVLVFGV  258 (334)
T ss_pred             EECCC----C----hHHHHHHHHHHhcCCEEEEEec
Confidence            85311    0    2356777888999999887653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=84.01  E-value=2.5  Score=35.93  Aligned_cols=75  Identities=9%  Similarity=-0.031  Sum_probs=62.6

Q ss_pred             EEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024008          134 VGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       134 ~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      .-+...+...+.+++++      .+|.+..+|+.+.   -+.+.+|.++...+-.++++.....+..++.+-+.+|..++
T Consensus       290 lP~yl~~~~YEsir~n~------~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vi  363 (414)
T COG5379         290 LPAYLDEGVYESIRQNL------RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVI  363 (414)
T ss_pred             CChhhchhhHHHHHhhh------hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEE
Confidence            33556788888888887      5799999999883   25678999999999888988899999999999999999988


Q ss_pred             EEEc
Q 024008          211 TLMF  214 (274)
Q Consensus       211 ~~~~  214 (274)
                      .-..
T Consensus       364 fRta  367 (414)
T COG5379         364 FRTA  367 (414)
T ss_pred             Eecc
Confidence            7554

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=83.94  E-value=5.6  Score=36.86  Aligned_cols=95  Identities=16%  Similarity=0.285  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCCcc-hhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----------------
Q 024008          107 LPKGRALVPGCGTG-YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----------------  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G-~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----------------  168 (274)
                      .++.+|+=+|+|.= ..+..+++ .|+.|+++|.+++.++.++..-        .+++..|..+                
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG--------a~~v~v~~~e~g~~~~gYa~~~s~~~  233 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG--------AEFLELDFKEEGGSGDGYAKVMSEEF  233 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEeccccccccccccceeecCHHH
Confidence            35689999999864 33444444 7889999999999888877631        2222222110                


Q ss_pred             ------CCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          169 ------WCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       169 ------~~~--~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                            ..+  -..+|+|+....+..-+.+  .-+.+++.+.+|||+.++=
T Consensus       234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       234 IAAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence                  011  2469999876544332211  2355778999999998773

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=83.53  E-value=7.4  Score=33.71  Aligned_cols=94  Identities=16%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC----CCCCCCeeEE
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT----WCPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~----~~~~~~fD~v  178 (274)
                      .++.+||=.|+  |.|..+..+++ .|+++++++-+++..+.+++.+...   .-+..... +..+    .. .+.+|+|
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~-~~gvd~v  225 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD---DAFNYKEEPDLDAALKRYF-PNGIDIY  225 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc---eeEEcCCcccHHHHHHHhC-CCCcEEE
Confidence            45678888885  56677777777 7889999998888888887633211   11111111 2211    12 2568999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +..     ..    ...+....++|+++|.++...
T Consensus       226 ~d~-----~g----~~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         226 FDN-----VG----GKMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             EEC-----CC----HHHHHHHHHHhccCcEEEEec
Confidence            842     11    134578889999999988654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK12939 short chain dehydrogenase; Provisional

Probab=83.08  E-value=17  Score=29.62  Aligned_cols=73  Identities=15%  Similarity=-0.032  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          108 PKGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      +++++|=.|+ +|..+..+    ++.|+++++++-+++.+..........+  .++.++.+|+.+...           .
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3567887775 44444444    4478999999988876665555443332  468889999986211           1


Q ss_pred             CCeeEEEeccc
Q 024008          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~fD~v~~~~~  183 (274)
                      ++.|.|+.+..
T Consensus        83 ~~id~vi~~ag   93 (250)
T PRK12939         83 GGLDGLVNNAG   93 (250)
T ss_pred             CCCCEEEECCC
Confidence            46898887643

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=83.05  E-value=11  Score=31.45  Aligned_cols=92  Identities=18%  Similarity=0.134  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      .++.+||-.|||. |..+..+++ .|.+ +++++.+++..+.+++.-..    +.+.....   .......+|+|+....
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~----~~~~~~~~---~~~~~~~~d~vl~~~~  168 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA----DPVAADTA---DEIGGRGADVVIEASG  168 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC----ccccccch---hhhcCCCCCEEEEccC
Confidence            3557888888764 555555555 6777 99999999888876654200    11110000   1113346898884211


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      -        ...+....++++++|.++...
T Consensus       169 ~--------~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         169 S--------PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             C--------hHHHHHHHHHhcCCcEEEEEe
Confidence            0        124577888999999987654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=83.00  E-value=4.2  Score=35.31  Aligned_cols=95  Identities=22%  Similarity=0.185  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc-------cCCCCCCCCee
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-------FFTWCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~~~~~~fD  176 (274)
                      .++.+||-.|+|. |..+..+++ .|.+ +++++-+++..+.+++.    +...-+.....+       +........+|
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d  236 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGKGPD  236 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence            4456777777654 555566666 6776 89998888877777553    111101111111       11123345699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +|+....-        ...+....++|+++|.++...
T Consensus       237 ~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         237 VVIECTGA--------ESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             EEEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence            99853221        124577889999999988654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF14740 DUF4471: Domain of unknown function (DUF4471)

Probab=82.71  E-value=0.81  Score=38.91  Aligned_cols=79  Identities=24%  Similarity=0.355  Sum_probs=46.4

Q ss_pred             ceEEEEcccCCCCC-----CCCeeEEEecccccc-cChhHHHHHHHHHHhcccCCcEEEEEEcc-CCCCCCCCCcccCHH
Q 024008          158 FVSFLKADFFTWCP-----TELFDLIFDYTFFCA-IEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDHVGGPPYKVSVS  230 (274)
Q Consensus       158 ~v~~~~~d~~~~~~-----~~~fD~v~~~~~~~~-~~~~~~~~~l~~l~~~L~~gG~l~~~~~~-~~~~~~~~~~~~~~~  230 (274)
                      +|.|+..|.....+     .+.||+|+......+ +.        ..+..+++|++.|++.... +.+. .......-..
T Consensus       201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~--------p~l~~~~a~~A~LvvEtaKfmvdL-rKEq~~~F~~  271 (289)
T PF14740_consen  201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLK--------PELFQALAPDAVLVVETAKFMVDL-RKEQLQEFVK  271 (289)
T ss_pred             EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcc--------hHHHHHhCCCCEEEEEcchhheeC-CHHHHHHHHH
Confidence            45666655544221     357999997654333 33        2377788999999886521 1110 0000111356


Q ss_pred             HHHHHHhcCCCcEEE
Q 024008          231 DYEEVLQPMGFQAIS  245 (274)
Q Consensus       231 ~~~~~~~~~Gf~~~~  245 (274)
                      .+.++++.+||+-+.
T Consensus       272 kv~eLA~~aG~~p~~  286 (289)
T PF14740_consen  272 KVKELAKAAGFKPVT  286 (289)
T ss_pred             HHHHHHHHCCCcccc
Confidence            788999999997643

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=82.50  E-value=2.2  Score=37.20  Aligned_cols=95  Identities=17%  Similarity=0.139  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008          107 LPKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~  179 (274)
                      .++.+||-.|+| .|..+..+++ .|. .++++|.+++..+.+++.-    ...-+.....+...    ......+|+|+
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g----~~~~v~~~~~~~~~~i~~~~~~~~~d~vl  240 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYG----ATDIVDYKNGDVVEQILKLTGGKGVDAVI  240 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcC----CceEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence            345788888765 3344455555 677 5999999988887776532    11111111112111    12234689988


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ....     .   ...+..+.++|+++|.++...
T Consensus       241 d~~g-----~---~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         241 IAGG-----G---QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             ECCC-----C---HHHHHHHHHHhhcCCEEEEec
Confidence            4211     0   134678888999999988654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=82.49  E-value=26  Score=28.78  Aligned_cols=60  Identities=20%  Similarity=0.094  Sum_probs=39.6

Q ss_pred             CCCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..+++++|-.|++.| .+.    .+++.|++|+.++-+++.+..........+  .++.++.+|+.+
T Consensus         8 ~~~~k~ilItGas~~-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~   71 (256)
T PRK06124          8 SLAGQVALVTGSARG-LGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIAD   71 (256)
T ss_pred             CCCCCEEEEECCCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCC
Confidence            345678888886544 333    344589999999998876665555444332  347777778754

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=82.43  E-value=5.4  Score=30.76  Aligned_cols=111  Identities=16%  Similarity=0.049  Sum_probs=62.6

Q ss_pred             eEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          111 RALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      +|-=||+|  ..+..+    ++.|..|++.|.+++..+...+.-        ... ..+..+..  ...|+|+..-    
T Consensus         3 ~Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g--------~~~-~~s~~e~~--~~~dvvi~~v----   65 (163)
T PF03446_consen    3 KIGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG--------AEV-ADSPAEAA--EQADVVILCV----   65 (163)
T ss_dssp             EEEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT--------EEE-ESSHHHHH--HHBSEEEE-S----
T ss_pred             EEEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh--------hhh-hhhhhhHh--hcccceEeec----
Confidence            34456654  454444    448999999999998777665442        111 12222111  2348888431    


Q ss_pred             cChhHHHHHHHH--HHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          187 IEPEMRAAWAQK--IKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       187 ~~~~~~~~~l~~--l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      -+++....++..  +...|++|..++-..  .       ...-+..++.+.++..|...++..
T Consensus        66 ~~~~~v~~v~~~~~i~~~l~~g~iiid~s--T-------~~p~~~~~~~~~~~~~g~~~vdap  119 (163)
T PF03446_consen   66 PDDDAVEAVLFGENILAGLRPGKIIIDMS--T-------ISPETSRELAERLAAKGVRYVDAP  119 (163)
T ss_dssp             SSHHHHHHHHHCTTHGGGS-TTEEEEE-S--S---------HHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccchhhhhhhhhhHHhhccccceEEEecC--C-------cchhhhhhhhhhhhhccceeeeee
Confidence            233556677777  888888777665432  1       111256788888888896665544

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05854 short chain dehydrogenase; Provisional

Probab=82.39  E-value=11  Score=32.49  Aligned_cols=77  Identities=14%  Similarity=0.073  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008          108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~  173 (274)
                      .++++|=.|++.|.-   +..|++.|++|+.+.-+.+..+.+.+.+....-..++.++.+|+.+..           ..+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            456888888766532   344555899999999888766666554433211235888999987621           124


Q ss_pred             CeeEEEecccc
Q 024008          174 LFDLIFDYTFF  184 (274)
Q Consensus       174 ~fD~v~~~~~~  184 (274)
                      +.|+++.+...
T Consensus        93 ~iD~li~nAG~  103 (313)
T PRK05854         93 PIHLLINNAGV  103 (313)
T ss_pred             CccEEEECCcc
Confidence            68999987543

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.10  E-value=26  Score=28.63  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=44.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------------C
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------------C  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------------~  170 (274)
                      .++..||-.||..|..+.++++    .|+.|++.--+-+.........       .+.....|+.+.            .
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~   77 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRAN   77 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhC
Confidence            3457899999999999887776    7889998765443333322221       244556666541            2


Q ss_pred             CCCCeeEEEecc
Q 024008          171 PTELFDLIFDYT  182 (274)
Q Consensus       171 ~~~~fD~v~~~~  182 (274)
                      +.++.|+.+.+.
T Consensus        78 ~~Gkld~L~NNA   89 (289)
T KOG1209|consen   78 PDGKLDLLYNNA   89 (289)
T ss_pred             CCCceEEEEcCC
Confidence            557788887664

>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences

Probab=82.04  E-value=6.1  Score=40.17  Aligned_cols=94  Identities=14%  Similarity=0.143  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~~  185 (274)
                      .+.++||+|+|.-.=...+..+..-|+.+|.-|-       ......+....+|++.|...  ..-..++|.+.|...+.
T Consensus       822 ~~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~-------ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLG  894 (1289)
T PF06016_consen  822 DPDHWLDLGTGPECRILSLIPPDTPVTMVDTRPF-------AEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLG  894 (1289)
T ss_dssp             CC-CEEEET--TT-CHHHCS-TTSEEEEEESS---------SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHH
T ss_pred             CcceEEEccCCccceeeeccCCCCceEEEecCCc-------ccccchhhhcceeeeeccccceeEecCCCCEEEEEeeeh
Confidence            3579999988887666666668889999999774       12334455678999999987  33456899999988776


Q ss_pred             cc---ChhHHHHHHHHHHhcccCCcE
Q 024008          186 AI---EPEMRAAWAQKIKDFLKPDGE  208 (274)
Q Consensus       186 ~~---~~~~~~~~l~~l~~~L~~gG~  208 (274)
                      ..   ..-.+...++++.+.+++.|.
T Consensus       895 AAaA~a~~tl~~~l~~~l~~~~~~~~  920 (1289)
T PF06016_consen  895 AAAASANVTLDAGLQQFLSQCVQANV  920 (1289)
T ss_dssp             HHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred             hhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence            53   112456778888888888774

The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.

>cd05281 TDH Threonine dehydrogenase

Probab=81.99  E-value=3.9  Score=35.49  Aligned_cols=95  Identities=16%  Similarity=0.251  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc---CCCCCCCCeeEEEe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF---FTWCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~fD~v~~  180 (274)
                      .++.+||-.|+|. |..+..+++ .|. ++++++-+++....+++.-..    .-+.....++   .+....+.+|+|+.
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~vd~vld  237 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGAD----VVINPREEDVVEVKSVTDGTGVDVVLE  237 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcc----eeeCcccccHHHHHHHcCCCCCCEEEE
Confidence            3556777766643 445555555 677 688887777766666543210    0011111111   12233457899985


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .-.    .    ...+..+.++|+++|.++...
T Consensus       238 ~~g----~----~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         238 MSG----N----PKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             CCC----C----HHHHHHHHHHhccCCEEEEEc
Confidence            321    1    123567788999999987654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK06139 short chain dehydrogenase; Provisional

Probab=81.86  E-value=17  Score=31.66  Aligned_cols=74  Identities=15%  Similarity=0.062  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008          108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~  173 (274)
                      .+++||=.|++.|.-   +..+++.|++|+.++-+++.++...+.+...+  .++.++.+|+.+..           ..+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            456788888755422   33455589999999999888877666655443  35777888887621           125


Q ss_pred             CeeEEEeccc
Q 024008          174 LFDLIFDYTF  183 (274)
Q Consensus       174 ~fD~v~~~~~  183 (274)
                      ++|+++.+..
T Consensus        84 ~iD~lVnnAG   93 (330)
T PRK06139         84 RIDVWVNNVG   93 (330)
T ss_pred             CCCEEEECCC
Confidence            6899988754

>TIGR00936 ahcY adenosylhomocysteinase

Probab=81.80  E-value=14  Score=33.24  Aligned_cols=104  Identities=14%  Similarity=0.067  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ..+.+|+=+|+|. |......++ .|++|+++|.++.....+...    +    ..+.  +..+..  ...|+|+.... 
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G----~~v~--~leeal--~~aDVVItaTG-  259 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G----FRVM--TMEEAA--KIGDIFITATG-  259 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C----CEeC--CHHHHH--hcCCEEEECCC-
Confidence            5678999999987 333333333 688999999988654444321    2    1111  221111  34688875321 


Q ss_pred             cccChhHHHHHH-HHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024008          185 CAIEPEMRAAWA-QKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       185 ~~~~~~~~~~~l-~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                            . ..++ ......+++|++++......        ..++.+.+.+.+.+
T Consensus       260 ------~-~~vI~~~~~~~mK~GailiN~G~~~--------~eId~~aL~~~~~~  299 (406)
T TIGR00936       260 ------N-KDVIRGEHFENMKDGAIVANIGHFD--------VEIDVKALEELAVE  299 (406)
T ss_pred             ------C-HHHHHHHHHhcCCCCcEEEEECCCC--------ceeCHHHHHHHHhh
Confidence                  1 2233 34788899999887765321        12456666665544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK07063 short chain dehydrogenase; Provisional

Probab=81.78  E-value=28  Score=28.68  Aligned_cols=61  Identities=20%  Similarity=0.095  Sum_probs=40.8

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .++++|-.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+...++.++.+|+.+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   69 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD   69 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC
Confidence            45788888876542   23445558999999999888777666655432112457778888764

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=81.70  E-value=9.8  Score=32.67  Aligned_cols=94  Identities=20%  Similarity=0.062  Sum_probs=56.2

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+||-.|+| .|..+..+++ .|.++++++.+++..+.+++.- .   ..-+.....+.... ..+.+|+++.... 
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~---~~~~~~~~~~~~~~-~~~~~d~vi~~~~-  234 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-A---DEVVDSGAELDEQA-AAGGADVILVTVV-  234 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-C---cEEeccCCcchHHh-ccCCCCEEEECCC-
Confidence            345688888886 6666666666 6889999999998887775422 1   00011111111101 1246898884311 


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                         .    ...+..+.+.|+++|.++...
T Consensus       235 ---~----~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         235 ---S----GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             ---c----HHHHHHHHHhcccCCEEEEEC
Confidence               0    124577788999999888764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=81.63  E-value=19  Score=30.90  Aligned_cols=113  Identities=14%  Similarity=0.076  Sum_probs=64.2

Q ss_pred             eEEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccccc
Q 024008          111 RALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAI  187 (274)
Q Consensus       111 ~vLDiG~G~G--~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~  187 (274)
                      +|-=||+|.=  ..+..+++.|.+|++.|.+++.++.+++..    .   ..  ..+..+.. .....|+|+..     +
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g----~---~~--~~s~~~~~~~~~~~dvIi~~-----v   67 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR----T---TG--VANLRELSQRLSAPRVVWVM-----V   67 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC----C---cc--cCCHHHHHhhcCCCCEEEEE-----c
Confidence            4556777652  234455568899999999998877766421    1   00  01211111 11235888743     3


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      ++.....+++.+...+++|-.+ +.. +..       ...+..+..+.+++.|...++.
T Consensus        68 p~~~~~~v~~~l~~~l~~g~iv-id~-st~-------~~~~t~~~~~~~~~~g~~~vda  117 (298)
T TIGR00872        68 PHGIVDAVLEELAPTLEKGDIV-IDG-GNS-------YYKDSLRRYKLLKEKGIHLLDC  117 (298)
T ss_pred             CchHHHHHHHHHHhhCCCCCEE-EEC-CCC-------CcccHHHHHHHHHhcCCeEEec
Confidence            3345567788888888887544 322 111       1124556666777778765443

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=81.63  E-value=2.2  Score=34.74  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=44.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ....-|.+||.|.|+.+..+...+. +...+|.++..+.-.+.......  .+..+..+|+..
T Consensus        49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR  109 (326)
T KOG0821|consen   49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR  109 (326)
T ss_pred             cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence            3457899999999999999998776 78888998887776665554332  246666666653

>PRK06701 short chain dehydrogenase; Provisional

Probab=81.07  E-value=28  Score=29.49  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  171 (274)
                      .+++++|-.|++.|.   .+..+++.|++|+.++.++. ............+  .++.++.+|+.+...           
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345688888875543   23445558999999887642 2333333333222  357888999876210           


Q ss_pred             CCCeeEEEecccccc-------cChhH-----------HHHHHHHHHhcccCCcEEEEEE
Q 024008          172 TELFDLIFDYTFFCA-------IEPEM-----------RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~-------~~~~~-----------~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      -.+.|+++.+.....       .+.+.           .-.+++.+.+.++++|.++...
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is  181 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG  181 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            136798886643321       11111           1244455666666777766544

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=81.04  E-value=22  Score=30.57  Aligned_cols=101  Identities=12%  Similarity=-0.036  Sum_probs=59.0

Q ss_pred             CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHH--hhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~--~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      ++|+=+|+|.  |.++..|++.|..|+.++-+.+.++..++.  +..... ................+.||+|+..-=- 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~-g~~~~~~~~~~~~~~~~~~D~viv~vK~-   80 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQ-GQASLYAIPAETADAAEPIHRLLLACKA-   80 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeC-CcceeeccCCCCcccccccCEEEEECCH-
Confidence            4788899885  345566777888999999887666655542  111000 0111111111112223578988843111 


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                          .....++..+...+.++..++....+.
T Consensus        81 ----~~~~~al~~l~~~l~~~t~vv~lQNGv  107 (305)
T PRK05708         81 ----YDAEPAVASLAHRLAPGAELLLLQNGL  107 (305)
T ss_pred             ----HhHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence                134567888999999999887776554

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=80.93  E-value=2.8  Score=36.50  Aligned_cols=96  Identities=16%  Similarity=0.153  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc---cCCCCCCCCee-EEE
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFD-LIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~fD-~v~  179 (274)
                      .++.+||=.|+|. |..+..+++ .|.+ +++++.+++..+.+++.-..    .-+.....+   +........+| +|+
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~d~~v~  234 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAM----QTFNSREMSAPQIQSVLRELRFDQLIL  234 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc----eEecCcccCHHHHHHHhcCCCCCeEEE
Confidence            3457888887643 233344454 6775 78999999888877543210    001111111   11122234577 655


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ..     ...   ...+....++|++||.+++...
T Consensus       235 d~-----~G~---~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        235 ET-----AGV---PQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             EC-----CCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence            31     111   2356778899999999887653

>KOG4174 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.92  E-value=14  Score=30.72  Aligned_cols=134  Identities=13%  Similarity=0.102  Sum_probs=79.6

Q ss_pred             CeEEEEcCCcchhHHHhhC-CC---CeEEEEeCChHHHH------HHHHHhhcCCCCcceEEEEcccCC-----CCCCCC
Q 024008          110 GRALVPGCGTGYDVVAMAS-PE---RYVVGLEISDIAIK------KAEELSSSLPNAKFVSFLKADFFT-----WCPTEL  174 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~---~~v~~iD~s~~~~~------~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~  174 (274)
                      .+||.+|=|.=..+..|+. -|   ..+++..++....+      .++.++.....-+-.-+...|+..     ...-.+
T Consensus        58 ~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~~~~  137 (282)
T KOG4174|consen   58 QKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLRLQR  137 (282)
T ss_pred             ccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEecccccccc
Confidence            5899998877777777776 22   25555555443322      123332211000111223334444     123468


Q ss_pred             eeEEEeccccccc-------------ChhHHHHHHHHHHhccc-CCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008          175 FDLIFDYTFFCAI-------------EPEMRAAWAQKIKDFLK-PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       175 fD~v~~~~~~~~~-------------~~~~~~~~l~~l~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  240 (274)
                      ||-||.+.+....             .......+++.+...|+ ..|.|.+....        .+.+++-.+..+.++.|
T Consensus       138 ~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~--------t~P~~~W~ik~Lak~~g  209 (282)
T KOG4174|consen  138 YDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKT--------TYPFNPWNIKFLAKEFG  209 (282)
T ss_pred             cceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecc--------CCCCchhhhhHhhhhcc
Confidence            9999987554332             12345678889999999 78998887532        24457788999999999


Q ss_pred             CcEEEEeeccc
Q 024008          241 FQAISIVDNKL  251 (274)
Q Consensus       241 f~~~~~~~~~~  251 (274)
                      ++.........
T Consensus       210 l~L~~~skF~~  220 (282)
T KOG4174|consen  210 LTLLEDSKFEK  220 (282)
T ss_pred             ccchhcccchh
Confidence            98877665443

>PRK07806 short chain dehydrogenase; Provisional

Probab=80.84  E-value=28  Score=28.34  Aligned_cols=103  Identities=15%  Similarity=0.009  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCcchhH----HHhhCCCCeEEEEeCCh-HHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008          108 PKGRALVPGCGTGYDV----VAMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~----~~l~~~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  171 (274)
                      +++++|-.|++.| .+    ..+++.|.+|++++-+. ...+.....+...+  .++.++.+|+.+...           
T Consensus         5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            3568888886443 33    33445788998887654 23333333332222  357888899876211           


Q ss_pred             CCCeeEEEeccccccc---Ch--------hHHHHHHHHHHhcccCCcEEEEEE
Q 024008          172 TELFDLIFDYTFFCAI---EP--------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~---~~--------~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .+..|+++.+......   ++        .-...+++.+.+.++.+|.++...
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence            1357888866432211   00        112355666776666667666543

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.81  E-value=13  Score=32.12  Aligned_cols=98  Identities=18%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             CCCCeEEEEc-CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEE-EcccCC-C--CCCCCeeEEEe
Q 024008          107 LPKGRALVPG-CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-KADFFT-W--CPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG-~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~-~--~~~~~fD~v~~  180 (274)
                      .|+.+|-=+| +|-|..+..+++ .|.+|+++|-+..--+.+-+.+....   -+.+. ..|..+ .  .-+...|.|..
T Consensus       180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~---fv~~~~d~d~~~~~~~~~dg~~~~v~~  256 (360)
T KOG0023|consen  180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV---FVDSTEDPDIMKAIMKTTDGGIDTVSN  256 (360)
T ss_pred             CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce---eEEecCCHHHHHHHHHhhcCcceeeee
Confidence            3556554444 358889998888 79999999998766666655553321   12222 223222 1  11233455442


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      . +         ...++.+.++||++|.++++..+..
T Consensus       257 ~-a---------~~~~~~~~~~lk~~Gt~V~vg~p~~  283 (360)
T KOG0023|consen  257 L-A---------EHALEPLLGLLKVNGTLVLVGLPEK  283 (360)
T ss_pred             c-c---------ccchHHHHHHhhcCCEEEEEeCcCC
Confidence            2 1         2235778899999999998876654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=80.68  E-value=14  Score=33.01  Aligned_cols=67  Identities=22%  Similarity=0.105  Sum_probs=47.0

Q ss_pred             CeEEEEcCCcchhHHHh----hCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024008          110 GRALVPGCGTGYDVVAM----ASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l----~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~  180 (274)
                      ++||=|||  |..+...    ++.+ .+|+..|-+.+.++.+......     +++..+.|+.+...    -..+|+|+.
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn   74 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVIN   74 (389)
T ss_pred             CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEE
Confidence            47899999  4444333    4455 7999999999988888776533     58899999876311    145699986


Q ss_pred             ccc
Q 024008          181 YTF  183 (274)
Q Consensus       181 ~~~  183 (274)
                      ...
T Consensus        75 ~~p   77 (389)
T COG1748          75 AAP   77 (389)
T ss_pred             eCC
Confidence            543

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=80.28  E-value=5.7  Score=33.31  Aligned_cols=73  Identities=19%  Similarity=0.187  Sum_probs=43.2

Q ss_pred             HHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHH
Q 024008          123 VVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIK  200 (274)
Q Consensus       123 ~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~  200 (274)
                      +..|.+.|  .+|+|+|.++..++.|.+.-.       +.-...+ .+..  ..+|+|+..     .|......+++++.
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-------~~~~~~~-~~~~--~~~Dlvvla-----vP~~~~~~~l~~~~   66 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALELGI-------IDEASTD-IEAV--EDADLVVLA-----VPVSAIEDVLEEIA   66 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-------SSEEESH-HHHG--GCCSEEEE------S-HHHHHHHHHHHH
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-------eeeccCC-HhHh--cCCCEEEEc-----CCHHHHHHHHHHhh
Confidence            44566655  699999999999888865421       1122222 1111  345988854     34455667788888


Q ss_pred             hcccCCcEEE
Q 024008          201 DFLKPDGELI  210 (274)
Q Consensus       201 ~~L~~gG~l~  210 (274)
                      ..+++|+.+.
T Consensus        67 ~~~~~~~iv~   76 (258)
T PF02153_consen   67 PYLKPGAIVT   76 (258)
T ss_dssp             CGS-TTSEEE
T ss_pred             hhcCCCcEEE
Confidence            8888776655

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
3lcc_A	235	Structure Of A Sam-Dependent Halide Methyltransfera		7e-79
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		2e-05
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		4e-04

>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From Arabidopsis Thaliana Length = 235

Iteration: 1
 Score =  290 bits (741), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 170/223 (76%), Gaps = 4/223 (1%)
Query: 46  KNREEVENDNVIKSHPRVNKLQQLMH-IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104
           +N ++    NVI   P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL  +
Sbjct: 6   QNSDQSNGGNVI---PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLVDT 62
Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
            +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K 
Sbjct: 63  SSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKE 122
Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGPP
Sbjct: 123 DVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP 182
Query: 225 YKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267
           YKV VS +EEVL P+GF+A+S+ +N  AI  RKG+EKLGRWK+
Sbjct: 183 YKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEKLGRWKK 225

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 101 LHQSGALPKG-RALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAK 157
           LH     P G + L  GCG G   V +A  +P+  +  ++IS  +++KA E ++     K
Sbjct: 29  LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE-NTEKNGIK 87
Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRA--AWAQKIKDFLKPDGELITL 212
            V FL+A+ F+  P E  D  FD+ F C +   +++     + +K  LKP G +  +
Sbjct: 88  NVKFLQANIFSL-PFE--DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 89  WDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148
           WD G  + II    Q     +   L  GCG GY    ++      VG++IS++ I+K +E
Sbjct: 35  WDSGSRSTIIPFFEQY-VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKE 93
Query: 149 LSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG 207
                P+   +SF+K D  +     E F+ I         E  +RA    +IK  LK DG
Sbjct: 94  RGEG-PD---LSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRA--LNEIKRVLKSDG 147
Query: 208 -ELITLMFPIS 217
              I ++ P +
Sbjct: 148 YACIAILGPTA 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
3lcc_A	235	Putative methyl chloride transferase; halide methy	1e-72
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	4e-35
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	4e-29
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	6e-21
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	6e-20
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	4e-17
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-13
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-12
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-12
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	9e-12
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	3e-11
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	3e-11
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	5e-11
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	2e-10
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-10
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	4e-10
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	5e-10
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-09
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-09
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	3e-09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	3e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	6e-09
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	8e-09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-08
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	2e-08
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-08
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-08
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-08
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	4e-08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	5e-08
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	6e-08
3i9f_A	170	Putative type 11 methyltransferase; structural gen	7e-08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	8e-08
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-07
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	3e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	7e-07
2p7i_A	250	Hypothetical protein; putative methyltransferase,	9e-07
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	1e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-06
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	2e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-06
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-06
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	3e-06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	3e-06
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-06
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	4e-06
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	4e-06
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	8e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-05
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	1e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-05
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	1e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	2e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-05
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-05
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	4e-05
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	6e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	1e-04
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	1e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-04
2b3t_A	276	Protein methyltransferase HEMK; translation termin	1e-04
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	2e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-04
3lpm_A	259	Putative methyltransferase; structural genomics, p	3e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-04
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	8e-04

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score =  221 bits (564), Expect = 1e-72
 Identities = 136/226 (60%), Positives = 169/226 (74%), Gaps = 1/226 (0%)

Query: 44  MGKNREEVENDNVIKSHPRVNKLQQLMHIE-SSGGWEKCWEEGLTPWDIGQPAPIIVHLH 102
           M + ++  +  N     P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL 
Sbjct: 1   MAEEQQNSDQSNGGNVIPTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLV 60

Query: 103 QSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL 162
            + +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+
Sbjct: 61  DTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFV 120

Query: 163 KADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG 222
           K D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGG
Sbjct: 121 KEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG 180

Query: 223 PPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268
           PPYKV VS +EEVL P+GF+A+S+ +N  AI  RKG+EKLGRWK+ 
Sbjct: 181 PPYKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEKLGRWKKI 226

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252

 Score =  126 bits (316), Expect = 4e-35
 Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 29/249 (11%)

Query: 43  KMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIV-HL 101
           K+  +   +  D        V K  Q++ +E    W++ W      +   Q   ++  HL
Sbjct: 5   KIHHHHHHMSLDMKEHPDAEVQK-NQVLTLE---DWKEKWVTRHISFHQEQGHQLLKKHL 60

Query: 102 HQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKA---------EELSS 151
                   G R   P CG   ++   A     VVG+EIS+I I++          EE  +
Sbjct: 61  DTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLA 120

Query: 152 SLPNAKF-------VSFLKADFFTWCPTEL--FDLIFDYTFFCAIEPEMRAAWAQKIKDF 202
            +  AK        +S      F      +  FD I+D     AI P     +A  I   
Sbjct: 121 EIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSL 180

Query: 203 LKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
           L+ + +  +  L +  + H  GPP+ V  ++ + +        +  ++   A+  R    
Sbjct: 181 LRKEFQYLVAVLSYDPTKH-AGPPFYVPSAELKRLFGT-KCS-MQCLEEVDALEERHKAW 237

Query: 261 KLGRWKRSV 269
            L      +
Sbjct: 238 GLDYLFEKL 246

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score =  108 bits (271), Expect = 4e-29
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 19/198 (9%)

Query: 89  WDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAE 147
               +    +  +      +P  R LVP CG   D+  ++    +VVG E+S+ A+++  
Sbjct: 2   SHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYF 61

Query: 148 ELSSSLP-----------NAKFVSFLKADFFTWCPTEL--FDLIFDYTFFCAIEPEMRAA 194
                 P            A  +     DFF     ++      +D     A+  +MR  
Sbjct: 62  TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRER 121

Query: 195 WAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI-VDNKL 251
           + Q ++  +       LITL +  +    GPP+ V  +    V+    ++   +   + L
Sbjct: 122 YVQHLEALMPQACSGLLITLEYDQALL-EGPPFSVPQTWLHRVMSG-NWEVTKVGGQDTL 179

Query: 252 AIGPRKGREKLGRWKRSV 269
               R  +  L R    V
Sbjct: 180 HSSARGLKAGLERMDEHV 197

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 86.8 bits (215), Expect = 6e-21
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 5/146 (3%)

Query: 81  CWEEGL--TPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEI 138
             +E      +++ +    ++   +   +  G+ L  GCG G + + +A+    V   + 
Sbjct: 5   IRDENYFTDKYELTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDK 62

Query: 139 SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQK 198
           + ++I   E + S   N   +     D         +D I        +E +        
Sbjct: 63  NAMSIANVERIKSI-ENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIAN 121

Query: 199 IKDFLKPDGELITLMFPISDHVGGPP 224
           ++   KP G  + +    +       
Sbjct: 122 MQRCTKPGGYNLIVAAMDTADYPCTV 147

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 84.2 bits (208), Expect = 6e-20
 Identities = 30/164 (18%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLE 137
           W++ + +    +   +P   +V    +  +P+G+ L    G G +   +AS    V  ++
Sbjct: 2   WDERFSQSEYVYG-TEPNDFLVS--VANQIPQGKILCLAEGEGRNACFLASLGYEVTAVD 58

Query: 138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWA 196
            S + + KA++L+        ++ ++++   +    + ++ I     FC +   +R    
Sbjct: 59  QSSVGLAKAKQLAQEKGVK--ITTVQSNLADFDIVADAWEGIVS--IFCHLPSSLRQQLY 114

Query: 197 QKIKDFLKPDGELITLMF---PISDHVGGPPYKVSVSDYEEVLQ 237
            K+   LKP G  I   F    +  + GGP     +   E +  
Sbjct: 115 PKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQS 158

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 78.1 bits (192), Expect = 4e-17
 Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 8/164 (4%)

Query: 67  QQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVH------LHQSGALPKGRALVPGCGTG 120
           Q    +E+     +C        +                +  +  +   + L  GCG G
Sbjct: 73  QAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132

Query: 121 YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD 180
            + + ++     V   + ++ +I    E          +S    D       E +D I  
Sbjct: 133 RNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANIQENYDFIVS 190

Query: 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
              F  +  E   +  + +K+     G  + +    +D V  P 
Sbjct: 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPL 234

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 67.4 bits (164), Expect = 1e-13
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 20/150 (13%)

Query: 78  WEKCW--EEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVV 134
           W++ +       P+D          L +    P+ R LV GCG       +       V 
Sbjct: 10  WDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVT 69

Query: 135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRA 193
            ++ S + +   +   + +P    + +   D      P+  FD++ +     A+    R 
Sbjct: 70  SVDYSSVVVAAMQACYAHVPQ---LRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERD 126

Query: 194 AWA-------------QKIKDFLKPDGELI 210
            W               ++   L P G  I
Sbjct: 127 PWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 14/144 (9%)

Query: 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
               G  L  G GTG     +AS    + GLE +   ++ A +     P+   V+F    
Sbjct: 39  TGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT---HPS---VTFHHGT 92

Query: 166 FFTW-CPTELFDLIFD-YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP-----ISD 218
                   + +  +   Y+       E+  A    ++  ++  G L+   F         
Sbjct: 93  ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALV-ALRMAVEDGGGLLMSFFSGPSLEPMY 151

Query: 219 HVGGPPYKVSVSDYEEVLQPMGFQ 242
           H     Y+  + +  + L+  GFQ
Sbjct: 152 HPVATAYRWPLPELAQALETAGFQ 175

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 63.9 bits (155), Expect = 3e-12
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 21/190 (11%)

Query: 71  HIESSGGWEKCWEE-----GLTPWDIGQPAPIIVHLHQSGAL--PKGRALVPGCGTGYDV 123
            I  +  WE+ W +         WD      ++V L +   L  P+   +   CG G   
Sbjct: 12  DINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQT 71

Query: 124 VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF--VSFLKADFFTWCPTELFDL-IFD 180
             ++     V+GL++S  A++ A + +++  N  +  +  L  +      +E+ D  I+ 
Sbjct: 72  KFLSQFFPRVIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPEQAAQIHSEIGDANIYM 130

Query: 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF---------PISDHVGGPPYKVSVSD 231
            T F  I  E R    Q ++  L   G +  +            + +  G  PY++    
Sbjct: 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELL-LV 189

Query: 232 YEEVLQPMGF 241
            E  ++P  F
Sbjct: 190 MEHGIRPGIF 199

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 61.8 bits (150), Expect = 9e-12
 Identities = 23/141 (16%), Positives = 36/141 (25%), Gaps = 11/141 (7%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
              + L  GCG GY   AM +    V   + S     +A                   F 
Sbjct: 43  AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFH 95

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP----ISDHVGGP 223
                + +D ++ +     +  +  A   + I   LKP G              D +   
Sbjct: 96  QLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARY 155

Query: 224 PYKVSVSDYEEVLQPMGFQAI 244
               S           G  A 
Sbjct: 156 YNYPSEEWLRARYAEAGTWAS 176

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTE 173
             G G D   +A   + V   ++ + A+ K  +      + N + +     +   +    
Sbjct: 30  TMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREP 89

Query: 174 LFDLIFDYTFFCAIEPEMRAAWA------QKIKDFLKPDGELITLMFPISDHVGGPPYKV 227
           +   IF+  +  + +  +           +KI D L+  G L  +++    H GG   K 
Sbjct: 90  IRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY--GHDGGDMEKD 147

Query: 228 SVSDYEEVLQPMGFQAISI 246
           +V +Y   L    F A+  
Sbjct: 148 AVLEYVIGLDQRVFTAMLY 166

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 14/151 (9%)

Query: 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
                +   CG G D   +AS       V G +I D AI    +  + L     V+ +K 
Sbjct: 22  EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81

Query: 165 DF--FTWCPTELFDLI-FDYTFFCAIE------PEMRAAWAQKIKDFLKPDGELITLMFP 215
                          + F+  +  + +      PE       K  + L   G +  +++ 
Sbjct: 82  GHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141

Query: 216 ISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246
                 G   K  V ++ + +    F     
Sbjct: 142 --GGDTGFEEKEKVLEFLKGVDQKKFIVQRT 170

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 59.9 bits (145), Expect = 5e-11
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
               +G  L    GTGY    ++     V  L+ S   I +A      L N   V F + 
Sbjct: 43  AGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--HGLDN---VEFRQQ 97

Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D F W P   +D +F   +   +  +   A+ + ++  + P G +        D      
Sbjct: 98  DLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE-----FVDVTDHER 152

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 7/108 (6%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLK 163
             G  L    G G            V  LE+S        K+  E  +        + ++
Sbjct: 82  VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAE--APADVRDRCTLVQ 139

Query: 164 ADFFTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            D   +   + F  +         ++   R      +++ L+P G+ +
Sbjct: 140 GDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
                  L  G GTG     +    PE     +++S+  ++ A+           V +++
Sbjct: 42  DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK---VKYIE 98

Query: 164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
           AD+  +   E +D++        +E E +    ++    LK  G  I      +D V G 
Sbjct: 99  ADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFI-----NADLVHGE 153

Query: 224 P---YKVSVSDYEEVLQPMGF 241
                 ++ + + + ++  G 
Sbjct: 154 TAFIENLNKTIWRQYVENSGL 174

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 82  WEEGLTPWD-IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISD 140
           W     P++       + + L    +      L  GC  G     +A   + +  +++  
Sbjct: 27  WRLDDNPFERERHTQLLRLSL---SSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMP 83

Query: 141 IAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE----PEMRAAWA 196
            AI +A + +    +   +S+   D   +   ELFDLI        +             
Sbjct: 84  RAIGRACQRTKRWSH---ISWAATDILQFSTAELFDLI---VVAEVLYYLEDMTQMRTAI 137

Query: 197 QKIKDFLKPDGELI 210
             +   L P G L+
Sbjct: 138 DNMVKMLAPGGHLV 151

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 42/211 (19%)

Query: 97  IIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSS 152
           +   L  +G L +  + L  G G G     +    ++   +  L I+ +  K+ EE ++ 
Sbjct: 70  LASELAMTGVLQRQAKGLDLGAGYGGAARFLV--RKFGVSIDCLNIAPVQNKRNEEYNNQ 127

Query: 153 LPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGEL 209
              A  ++     F    C    +D I+      A    P+    + +     LKP G +
Sbjct: 128 AGLADNITVKYGSFLEIPCEDNSYDFIW---SQDAFLHSPDKLKVFQE-CARVLKPRGVM 183

Query: 210 ITLMFPISDHVGGP-----------PYKVSVSDYEEVLQPMGFQAISIVD---------- 248
                   D +                  S+  Y  + +  G   +              
Sbjct: 184 AITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYS 243

Query: 249 --------NKLAIGPRKGREKLGRWKRSVRH 271
                       I      E     KR + H
Sbjct: 244 KVKAELIKRSSEIASFCSPEFQANMKRGLEH 274

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 21/149 (14%), Positives = 41/149 (27%), Gaps = 8/149 (5%)

Query: 88  PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAE 147
             D  + A  +  L +  +      L   CGTG  +  +A     V GLE+S   +  A 
Sbjct: 30  GKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIAR 89

Query: 148 ELSSSLPNAKFVSFLKADFFTWCPTELFDLIF--DYTFFCAIEPEMRAAWAQKIKDFLKP 205
                            D   +     F  +     +           A  ++    + P
Sbjct: 90  R------RNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLP 143

Query: 206 DGELITLMFPISDHVGGPPYKVSVSDYEE 234
           DG ++   +   ++           +   
Sbjct: 144 DGVVVVEPWWFPENFTPGYVAAGTVEAGG 172

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSS 152
           +     +       R L   CGTG   + +A     VVGL++      +A +KA+E +  
Sbjct: 30  VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK 89

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                 + FL+ D         FD +   ++     + E       K+ + LKP G  I
Sbjct: 90  ------IEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 12/119 (10%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSL 153
           I+       L     L   CGTG     +    +    +++S      A  K        
Sbjct: 27  IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK- 85

Query: 154 PNAKFVSFLKADFFTWCPTELFDLI--FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                      D         FDLI     +    I+ +    + + + + LK  G  I
Sbjct: 86  -----PRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 55.5 bits (133), Expect = 3e-09
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
           P        CG   +++A+     P   +VG++    A+  A  L++    A  ++  + 
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ 177

Query: 165 DFFTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
           D +     E +DL+  +       +        ++    LKP G L+T
Sbjct: 178 DAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 92  GQPAPIIVHL--HQSGALPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEE 148
               P +     + + +      L  G G     +++   + Y   G+EISD+ +KKAE 
Sbjct: 5   IIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN 64

Query: 149 LSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204
            S    N   ++  K D     F     E    ++ Y     +          +IK  LK
Sbjct: 65  FSRE--NNFKLNISKGDIRKLPF---KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK 119

Query: 205 PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF 241
           P G          D       K+   ++ ++ +    
Sbjct: 120 PGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKV 156

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 25/147 (17%)

Query: 116 GCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEE--LSSSLPNAKFVSFLKAD----- 165
           G G G+ +  ++     +  V  +++ +  +  A E      L N   V  LK++     
Sbjct: 45  GTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN---VEVLKSEENKIP 101

Query: 166 FFTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
                P    D I             E      + +K   KP   L  + +   +   GP
Sbjct: 102 L----PDNTVDFI---FMAFTFHELSEPLKFLEE-LKRVAKPFAYLAIIDWKKEERDKGP 153

Query: 224 P--YKVSVSDYEEVLQPMGFQAISIVD 248
           P     S  +   +L+  G +   +V+
Sbjct: 154 PPEEVYSEWEVGLILEDAGIRVGRVVE 180

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 16/119 (13%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSL 153
           I  L +S        L   CGTG  +           GLE+S      A K+  +     
Sbjct: 30  IADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPD----- 84

Query: 154 PNAKFVSFLKADFFTWCPTELFDLIF--DYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                 +  + D   +     F  +     +       E   A      + L+P G ++
Sbjct: 85  -----ATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 43/238 (18%), Positives = 72/238 (30%), Gaps = 60/238 (25%)

Query: 81  CWEEGLTPWDIGQPAPIIVH--LHQSGALPKGRALVPGCGTGYDVVAMASPERY---VVG 135
            WE+      +      +    +         R L  GCG G   V +A        V G
Sbjct: 32  YWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLA--TARDVRVTG 89

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIE--- 188
           + IS   + +A   +++   A  V+F  AD     F       FD ++      A+E   
Sbjct: 90  ISISRPQVNQANARATAAGLANRVTFSYADAMDLPF---EDASFDAVW------ALESLH 140

Query: 189 --PEMRAAWAQKIKDFLKPDGELIT---------------LMFPISDHVGGPPYKVSVSD 231
             P+ R    +++   L+P G +                  +       GG      + +
Sbjct: 141 HMPD-RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAG-GGVLSLGGIDE 198

Query: 232 YEEVLQPMGFQAISIVD------------------NKLAIGPRKGREKLGRWKRSVRH 271
           YE  ++       S VD                   +  + P  G E L R   + R 
Sbjct: 199 YESDVRQAELVVTSTVDISAQARPSLVKTAEAFENARSQVEPFMGAEGLDRMIATFRG 256

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERY-VVGLEIS----DIAIKKAEELSSSLPNAKFVSFL 162
           P  R    GCGTG   + +A  + Y V G+++S    +IA +KA E +        V F 
Sbjct: 33  PGKRIADIGCGTGTATLLLA--DHYEVTGVDLSEEMLEIAQEKAMETNRH------VDFW 84

Query: 163 KADFFTWCPTELFDLI--FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
             D       E  D I     +                    L   G+L+
Sbjct: 85  VQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 116 GCGTGYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPT 172
           GCG G D++    +      G++I++++I  A   + ++     V F   D +       
Sbjct: 72  GCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG 131

Query: 173 ELFDLIFD-YTFFCAIEPEMRA-AWAQKIKDFLKPDGELITLMF 214
           + FD+I   ++F  A           + I   L+P G  I  + 
Sbjct: 132 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 11/105 (10%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
           P+ R L  GCG G D              + S   +K A     + P+A    +      
Sbjct: 48  PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARA---NAPHADVYEWNGKGEL 104

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
                  F LI       ++   +             PD   + +
Sbjct: 105 PAGLGAPFGLIVSRRGPTSVILRLPEL--------AAPDAHFLYV 141

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 32/168 (19%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS 160
           L      P    L  GCGTG     +A     V+G + +   I+KA +   + P+   + 
Sbjct: 50  LQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQ---NYPH---LH 103

Query: 161 FLKADFFTWCPTELFDLIF-DYTF-FCAIEPEMRAAWAQKIKDFLKPDGELITLMF---- 214
           F  AD   +   +  D +F +    +     E  AA A  I   LK  G  +        
Sbjct: 104 FDVADARNFRVDKPLDAVFSNAMLHWV---KEPEAAIAS-IHQALKSGGRFVAEFGGKGN 159

Query: 215 ----------------PISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246
                             +     P Y  S+ +Y  +L+  GF     
Sbjct: 160 IKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYA 207

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 40/197 (20%), Positives = 64/197 (32%), Gaps = 34/197 (17%)

Query: 73  ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERY 132
           E    +E  +  G      G        L         + L  G G G   + +   E+Y
Sbjct: 22  EGVKVYEFIF--GENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYIN--EKY 77

Query: 133 ---VVGLEISDIAIKKAEELSSSLPNAKFV--SFLKADFFTWCPTELFDLIFDYTFFCAI 187
                G++I    +  A E  S      F     L  +F    P   FDLI+      A+
Sbjct: 78  GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF----PENNFDLIYSRDAILAL 133

Query: 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK----------------VSVSD 231
             E +    QK   +LKP G L+     I+D+                       ++V +
Sbjct: 134 SLENKNKLFQKCYKWLKPTGTLL-----ITDYCATEKENWDDEFKEYVKQRKYTLITVEE 188

Query: 232 YEEVLQPMGFQAISIVD 248
           Y ++L    F+ +   D
Sbjct: 189 YADILTACNFKNVVSKD 205

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF- 166
            +G+ L   CG G     +      VVG++IS+  I+KA E + S  +   V F+  D  
Sbjct: 38  KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDAR 95

Query: 167 ---FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
              F     + FD +         EP       ++++  LKP G+ I     + + +   
Sbjct: 96  KLSF---EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL 152

Query: 224 PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268
              + V     + + +  Q    V  +        R +   W ++
Sbjct: 153 KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKT 197

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
             G  L  G GTG     +    R V G+E S      A+E    LP     S  + DF 
Sbjct: 45  SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKE---KLPKE--FSITEGDFL 99

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           ++      D I     F  +  + +     K    L   G+++      +D +    
Sbjct: 100 SFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIV-----FADTIFADQ 151

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 52.0 bits (124), Expect = 5e-08
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 100 HLHQSGALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKF 158
            +         RAL  G G G     + +        LE     +++A+   + +P  KF
Sbjct: 85  FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKF 144

Query: 159 VSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
           +    A   T   P   +DLI        +       + +  +  L P+G + 
Sbjct: 145 I---LASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF 194

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 94  PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSS 151
            A II  L         + L  G   G     +A    +  V  +E +   +++  +  +
Sbjct: 60  AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA 119

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
              N   +  +  D              D  +    +P       +  K FLK  G  + 
Sbjct: 120 EREN---IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMI 176

Query: 212 LMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
            +   S  V   P K    + +E+L+  GF+ +  VD
Sbjct: 177 AIKARSIDVTKDP-KEIFKEQKEILEAGGFKIVDEVD 212

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 18/151 (11%)

Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175
           GCG G+    +      +  ++I+ IA+K+ +E          V  L +D     P E+ 
Sbjct: 25  GCGNGFYCKYLLEFATKLYCIDINVIALKEVKE------KFDSVITL-SD-----PKEIP 72

Query: 176 DLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYE 233
           D   D+  F     + + +     ++K  LK DG +I + +   +   GPP  + + + +
Sbjct: 73  DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKD 132

Query: 234 EVLQPMGFQAISIVD----NKLAIGPRKGRE 260
            +     F      +    +   +  RK  E
Sbjct: 133 YMGWFSNFVVEKRFNPTPYHFGLVLKRKTSE 163

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 7/157 (4%)

Query: 95  APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSS 151
           A ++  L +       R L  G  +G     M+    P   + G+E +   ++    +  
Sbjct: 64  AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR 123

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
              N   +  +  D              D  +    +PE  A   +  + FL+  G ++ 
Sbjct: 124 DRRN---IFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYML- 179

Query: 212 LMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
           +                     + L   G +   +V 
Sbjct: 180 MAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVH 216

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 37/182 (20%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKA-------EELS 150
           L   G+L     L  GCGTG DV   +        V+G+++ D  ++ A        E  
Sbjct: 76  LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135

Query: 151 SSLPNAKFVSFLKADFFTWC-------PTELFDLIFDYTFFCAIE--PEMRAAWAQKIKD 201
              P+   V FLK              P    D++      C         A + + I  
Sbjct: 136 FGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIV---ISNCVCNLSTNKLALFKE-IHR 191

Query: 202 FLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
            L+  GEL       +D                     + + D+  ++   GF+ + +V 
Sbjct: 192 VLRDGGELY-FSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS 250

Query: 249 NK 250
             
Sbjct: 251 VG 252

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 37/166 (22%), Positives = 54/166 (32%), Gaps = 32/166 (19%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKF 158
           L Q            GCG G     +        + G++  D  ++KA +    LPN   
Sbjct: 26  LAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---LPN--- 79

Query: 159 VSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF---- 214
            +F KAD  TW P +  DL++    F  + P+  A  +Q + D L+  G L   M     
Sbjct: 80  TNFGKADLATWKPAQKADLLYANAVFQWV-PDHLAVLSQ-LMDQLESGGVLAVQMPDNLQ 137

Query: 215 ------------------PISDHVGGPPYKVSVSDYEEVLQPMGFQ 242
                               S            SDY   L P   +
Sbjct: 138 EPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 30/188 (15%), Positives = 52/188 (27%), Gaps = 36/188 (19%)

Query: 84  EGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERY---VVGLEIS 139
             +     G P   +  L     L +       GCGTG   + +A        V GL+  
Sbjct: 21  SNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLA--GHVTGQVTGLDFL 78

Query: 140 DIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
              I      +        V+ +        F     E  DLI+       I  E R   
Sbjct: 79  SGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF---RNEELDLIWSEGAIYNIGFE-RG-- 132

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGP---------------PYKVSVSDYEEVLQPMG 240
             + + +LK  G L      +S+                    P   ++ +    +   G
Sbjct: 133 LNEWRKYLKKGGYLA-----VSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAG 187

Query: 241 FQAISIVD 248
           +  ++   
Sbjct: 188 YLPVATFI 195

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 10/106 (9%)

Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
              G  L  G   G     +      +  +E S+ AI  A+           ++++ + F
Sbjct: 41  FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGR-----LKDGITYIHSRF 95

Query: 167 FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELI 210
                   +D I        +E   +  A   +   D+L   G L 
Sbjct: 96  EDAQLPRRYDNI---VLTHVLEHIDDPVALLKRINDDWLAEGGRLF 138

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 96  PIIVHLHQSGALPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSS 151
             I  L +            GC  G   ++       P   ++G++ S   +++  +  +
Sbjct: 46  TAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA 105

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
           +  +   V  L  D           ++        + PE R A   KI + L P+G L+ 
Sbjct: 106 AYHSEIPVEILCNDIRHVEIKN-ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL 164

Query: 212 LMFPISDH 219
                 + 
Sbjct: 165 SEKFRFED 172

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 7/147 (4%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
                  AL  G G G     +  P  R V  ++I++  + +A+         +  ++  
Sbjct: 76  NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGE-EGKRVRNYFC 134

Query: 164 ADFFTWCPTE-LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG 222
                + P    +D+I+       +  +  A + ++ K  L+P+G ++       + V  
Sbjct: 135 CGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL 194

Query: 223 PPYKVSV----SDYEEVLQPMGFQAIS 245
                SV         ++   G   ++
Sbjct: 195 DDVDSSVCRDLDVVRRIICSAGLSLLA 221

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
              R L  GCG G  +          +G++I++  IK  E         KF + +K+D  
Sbjct: 41  GCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG--------KF-NVVKSDAI 91

Query: 168 TW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            +    P +  D +    F   ++PE            +K    ++
Sbjct: 92  EYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV 137

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 108 PKGRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEE--LSSSLPNAKFVSFLK 163
            +G  +  GCG G     +   +P+  VV ++ S +A+  +     ++         F+ 
Sbjct: 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 281

Query: 164 ADFFTWCPTELFDLIFDYTFFC--------AIEPEMRAAWAQKIKDFLKPDGEL 209
            +  +      F+ +      C        A+   +        +  LK +GEL
Sbjct: 282 NNALSGVEPFRFNAV-----LCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 330

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 33/177 (18%)

Query: 100 HLHQSGALPKGRALVPGCGTGYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKF 158
           ++     +  G  +  G G G   +A+A   +  +  L+ S    + A +  +       
Sbjct: 35  NIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDR 94

Query: 159 VSFLKADF----FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITL 212
           +  ++ D              DLI       ++    ++  A+ + I   LK  G+    
Sbjct: 95  IQIVQGDVHNIPI---EDNYADLI---VSRGSVFFWEDVATAFRE-IYRILKSGGKTYIG 147

Query: 213 ----MFPISDHVGGPPYKV---------------SVSDYEEVLQPMGFQAISIVDNK 250
                  + D +     +                +V  ++ VL  +G  +  I+   
Sbjct: 148 GGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGD 204

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 26/167 (15%)

Query: 100 HLHQSGALPKG-RALVPGCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPN 155
            +     L    +    GCGTG   + +A  +     + G+++    I+   E +     
Sbjct: 37  AVSFINELTDDAKIADIGCGTGGQTLFLA--DYVKGQITGIDLFPDFIEIFNENAVKANC 94

Query: 156 AKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
           A  V  +        F     E  DLI+       I  E       +   +LK  G +  
Sbjct: 95  ADRVKGITGSMDNLPF---QNEELDLIWSEGAIYNIGFE---RGMNEWSKYLKKGGFIAV 148

Query: 212 -----LMFPISDHVGGP-----PYKVSVSDYEEVLQPMGFQAISIVD 248
                        +        P    +    + ++  G+   +   
Sbjct: 149 SEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFI 195

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 94  PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELS 150
              I+  L  +      + L  G  +G  +  ++          G+E S   +++   ++
Sbjct: 62  AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVA 121

Query: 151 SSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
              PN   +  L AD       +      D  +    +P+         K FLK +G+++
Sbjct: 122 QRRPN---IFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDML 178

Query: 211 TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
            ++   S  V   P ++      E L+   F+ I I++
Sbjct: 179 LVIKARSIDVTKDPKEI-YKTEVEKLENSNFETIQIIN 215

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 116 GCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLKADFFTWC- 170
            CGTG D + +      V  ++ S      A+K+           K+V   +A++ T   
Sbjct: 65  ACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWV-IEEANWLTLDK 123

Query: 171 ---PTELFDLI------FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                + FD +      F +      +        + I   ++P G L+
Sbjct: 124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 25/118 (21%)

Query: 104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
              LP+GR +  G GTG      A P +  +G+E S+   + A +        + V  LK
Sbjct: 43  KCLLPEGRGVEIGVGTGR----FAVPLKIKIGVEPSERMAEIARK--------RGVFVLK 90

Query: 164 ADF----FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITLMFP 215
                        E FD          I    +   A   +    LK  G LI  +  
Sbjct: 91  GTAENLPL---KDESFDFA---LMVTTICFVDDPERALK-EAYRILKKGGYLIVGIVD 141

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 100 HLHQSGALPKG-RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS--LP 154
            LH     P G + L  GCG G   V +A   P+  +  ++IS  +++KA E +    + 
Sbjct: 28  LLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK 87

Query: 155 NAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGE 208
           N   V FL+A+     F       FD I        +E       A    +K  LKP G 
Sbjct: 88  N---VKFLQANIFSLPF---EDSSFDHI---FVCFVLEHLQSPEEALKS-LKKVLKPGGT 137

Query: 209 LITLMFPISDHVGGPPYKVSVSDYEEVLQ 237
           +  +          P  K ++  +  +++
Sbjct: 138 ITVIEGDHGSCYFHPEGKKAIEAWNCLIR 166

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 94  PAPIIVHLHQ--SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151
           P  I  H+    S +      +   CG G + +  A     V+ ++I  + I  A   + 
Sbjct: 62  PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAE 121

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG-ELI 210
               A  + F+  DF         D++F    +    P+   A    I+  + PDG E+ 
Sbjct: 122 VYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG--PDYATAETFDIRTMMSPDGFEIF 179

Query: 211 TLMFPISDHVG 221
            L   I++++ 
Sbjct: 180 RLSKKITNNIV 190

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 26/163 (15%)

Query: 88  PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIK 144
             D      II+     G  P    L  G G+G     +      +  +  +E  +  +K
Sbjct: 96  EIDASY---IIMRC---GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK 149

Query: 145 KAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204
           KA +  S   +   V   ++D   +   +++D +          P+      + I   +K
Sbjct: 150 KAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI------PDPWNHVQK-IASMMK 202

Query: 205 PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247
           P       +          P           L   G   +  V
Sbjct: 203 PGSVATFYL----------PNFDQSEKTVLSLSASGMHHLETV 235

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 105 GALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
               +   L  GCG G+  +  A    + V+G+++S+  + +A+  ++S      V + +
Sbjct: 41  PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPV----VCYEQ 96

Query: 164 ADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                     + ++++   +              +K+   LK  G  I
Sbjct: 97  KAIEDIAIEPDAYNVVL--SSLALHYIASFDDICKKVYINLKSSGSFI 142

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 39/244 (15%)

Query: 50  EVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWE--------EGLTPWDIGQPAP----- 96
           + E+   I     +N    L+  +         E        E  +PW+  +        
Sbjct: 49  DFESAKHILDDAEMNHALSLI-RKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRY 107

Query: 97  --IIVHLHQSGALPKG-RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSS 151
             ++ +    G   +G RA+  G G       + S      V  +EI     + + ++  
Sbjct: 108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE 167

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI- 210
            L     V+ +  D       E FD++       A   E +    + I  ++  +  +I 
Sbjct: 168 GLGVDG-VNVITGDETVIDGLE-FDVLMV-----AALAEPKRRVFRNIHRYVDTETRIIY 220

Query: 211 -------TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLG 263
                   +++            ++      V+ P G    + V         +   KL 
Sbjct: 221 RTYTGMRAILYAPVS-----DDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKLE 275

Query: 264 RWKR 267
               
Sbjct: 276 GKPI 279

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 26/195 (13%), Positives = 58/195 (29%), Gaps = 48/195 (24%)

Query: 93  QPAP---IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEEL 149
           +P      ++   +   L     L  G  TG  +         VV  +++  A++     
Sbjct: 5   EPGEDTYTLMDALEREGLEMKIVLDLGTSTGV-ITEQLRKRNTVVSTDLNIRALE----- 58

Query: 150 SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWA------QKIKDFL 203
                + +  + ++AD       E  D++     +     +            + I  F+
Sbjct: 59  -----SHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD--PIIGGGYLGREVIDRFV 111

Query: 204 K--PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM---GFQAISIVDNKLAIGPRKG 258
                G L   +  I             +  +EVL  +   G+    +   K+       
Sbjct: 112 DAVTVGML--YLLVIEA-----------NRPKEVLARLEERGYGTRILKVRKI------L 152

Query: 259 REKLG--RWKRSVRH 271
            E +   + ++S  H
Sbjct: 153 GETVYIIKGEKSHHH 167

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 32/189 (16%)

Query: 75  SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVV 134
           +   ++ W+ G            I+   +     +   L  GCG GY    ++      V
Sbjct: 28  NQNSQEMWDSGSRST--------IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAV 79

Query: 135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPE 190
           G++IS++ I+K +E          +SF+K D     F     E F+ I           E
Sbjct: 80  GVDISEVMIQKGKERGEGPD----LSFIKGDLSSLPF---ENEQFEAIMAINSLEWT-EE 131

Query: 191 MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK-----------VSVSDYEEVLQPM 239
              A  + IK  LK DG     +   +       Y            +   ++E++++  
Sbjct: 132 PLRALNE-IKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQ 190

Query: 240 GFQAISIVD 248
           GF+ +  + 
Sbjct: 191 GFKVVDGIG 199

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 32/118 (27%), Positives = 41/118 (34%), Gaps = 18/118 (15%)

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP 154
           I+  L +         L  GCG GY   A A   PE    GL++S +AIK A   +   P
Sbjct: 74  IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA---AKRYP 130

Query: 155 NAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
              F     A            D I      C  E E+           +KP G +IT
Sbjct: 131 QVTFCV---ASSHRLPFSDTSMDAIIRIYAPCKAE-ELARV--------VKPGGWVIT 176

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 18/140 (12%)

Query: 116 GCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT 172
           G G+G  +   A    +     G+++S +   +A+  +  L  ++ V F+  D   +   
Sbjct: 44  GSGSGEMLCTWA--RDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 101

Query: 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL----ITLMFPISD-------HVG 221
           E  D+               A   + +   LKP G +           +         V 
Sbjct: 102 EKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVS 159

Query: 222 GPPYKVSVSDYEEVLQPMGF 241
                +++         +G+
Sbjct: 160 STSDFLTLPGLVGAFDDLGY 179

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 101 LHQSGALPKG-RALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNA 156
           ++    + K    +  GCG GY  + +           G++  +  + +A EL   LP  
Sbjct: 14  VNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD 73

Query: 157 KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
               FL+ D       + +D+   + F   +         QK+   +K  G++I  
Sbjct: 74  --SEFLEGDATEIELNDKYDIAICHAFLLHM-TTPETM-LQKMIHSVKKGGKIICF 125

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 106 ALPKG-RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV--SFL 162
             P+G + L  GCG G     ++     V+G ++  I I  A++     P A++V     
Sbjct: 43  MAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQ---DFPEARWVVGDLS 99

Query: 163 KADFFTWCPTELFDLIFD-YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG 221
                       FDLI         +  + R      I   L  DG  +           
Sbjct: 100 VDQI----SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF-------- 147

Query: 222 GPPYKVSVSDYEEVLQPMGF 241
           G        D+ EV + +G 
Sbjct: 148 GAGRGWVFGDFLEVAERVGL 167

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 21/138 (15%)

Query: 100 HLHQSGALPKGRALVP----------GCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEE 148
            L  +   P  RA++P          GCG G+           YV+GL++S+  + +A  
Sbjct: 25  GLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARA 84

Query: 149 LSSSLPNAKFVSFLKADFFT-WCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPD 206
                     +++ +AD      P + FDL +         +        + +   L P 
Sbjct: 85  AGPDTG----ITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA---RLFRTVHQALSPG 137

Query: 207 GELI-TLMFPISDHVGGP 223
           G  + +   PI      P
Sbjct: 138 GHFVFSTEHPIYMAPARP 155

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 27/154 (17%), Positives = 40/154 (25%), Gaps = 31/154 (20%)

Query: 116 GCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT 172
           GCG G  +V      R+   V G+ +S          +  L     V     +       
Sbjct: 125 GCGRGGSMVMAH--RRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM------ 176

Query: 173 ELFDLIFDYTFFCAI------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP--- 223
              D  FD     A                 +   FLK  G  +T+    +   G P   
Sbjct: 177 --LDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKW 234

Query: 224 ---------PYKVSVSDYEEVLQPMGFQAISIVD 248
                        S  +Y   +        +IVD
Sbjct: 235 VSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 24/114 (21%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE-LSSSLPNAKFVSFLKADF 166
                L  GCG G   +A+A   +     +I+  AIK A+E +  +  +   +  + +D 
Sbjct: 52  KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111

Query: 167 FTWCPTELFDLI-----------FDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
           +       ++ I             +                  K+ LK +GE+
Sbjct: 112 YENVKDRKYNKIITNPPIRAGKEVLHRII-------EEG-----KELLKDNGEI 153

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 14/158 (8%)

Query: 94  PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELS 150
           P+     + +     +   +  GCG G   + MA    P   ++G ++S   IK AE + 
Sbjct: 22  PSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIK 81

Query: 151 SSLPNA-KFVSFLKADF-------FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDF 202
              P+  K VSF  +               +  D+I         + E    + +     
Sbjct: 82  EGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFE---KFQRSAYAN 138

Query: 203 LKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240
           L+ DG +    +        P +   + +     Q +G
Sbjct: 139 LRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLG 176

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 7/164 (4%)

Query: 88  PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMA---SPERYVVGLEISDIAIK 144
           P+     A I+  + Q    P  + L  G  +G  V  ++    P+  V  +E S  + +
Sbjct: 57  PFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR 116

Query: 145 KAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204
               L+    N   +  +  D        +   + D  F    +P+     A     FL+
Sbjct: 117 DLINLAKKRTN---IIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLR 173

Query: 205 PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
             G  +  +            +   +   + +Q    +    + 
Sbjct: 174 NGGHFVISIKANCIDSTASA-EAVFASEVKKMQQENMKPQEQLT 216

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175
           GC +G    A+      V G+E    A ++A+E    L +         D       E F
Sbjct: 40  GCSSGALGAAIKENGTRVSGIEAFPEAAEQAKE---KLDHVVLGDIETMDMPY--EEEQF 94

Query: 176 DLIFDYTFFCAIE----PEMRAAWAQKIKDFLKPDGELI 210
           D +    F   +E    P    A  +K+K ++K +G ++
Sbjct: 95  DCV---IFGDVLEHLFDPW---AVIEKVKPYIKQNGVIL 127

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKF-----VSFLKADFFT 168
           G GTG   +A+AS  P+  ++ ++    A+  A+       NA+      +  L++D+F+
Sbjct: 117 GTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR------NAQHLAIKNIHILQSDWFS 170

Query: 169 WCPTELFDLI 178
               + F +I
Sbjct: 171 ALAGQQFAMI 180

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 10/124 (8%)

Query: 93  QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEEL 149
            P    + +  +G  P    +  G G+G   + +A+   PE  VV  EI +   K A E 
Sbjct: 78  HPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN 137

Query: 150 SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
                    V+    D +     E  D +          P+            LKP G  
Sbjct: 138 IKWAGFDDRVTIKLKDIYEGIEEENVDHVI------LDLPQPERVVEH-AAKALKPGGFF 190

Query: 210 ITLM 213
           +   
Sbjct: 191 VAYT 194

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 7/133 (5%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLE 137
           W      G            I+           R L  GCG G+ + A+A      VG++
Sbjct: 24  WIDAVRHGAIESRRQVTDQAILLAI--LGRQPERVLDLGCGEGWLLRALADRGIEAVGVD 81

Query: 138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQ 197
                +  A    +   +    S+ +         + +DLI       A+  +       
Sbjct: 82  GDRTLVDAARAAGAGEVHL--ASYAQLAEAKVPVGKDYDLIC---ANFALLHQDIIELLS 136

Query: 198 KIKDFLKPDGELI 210
            ++  L P G L+
Sbjct: 137 AMRTLLVPGGALV 149

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 23/175 (13%), Positives = 50/175 (28%), Gaps = 37/175 (21%)

Query: 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD- 165
            KG+ +    G G   + +++  +  +VG+EI +     A+   +       +  ++ D 
Sbjct: 49  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108

Query: 166 --FFTWCPTELFDLI------FDYTFFCAIEPEMRAA------------WAQKIKDFLKP 205
                  P E  D++      F                             +     LK 
Sbjct: 109 KKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ 168

Query: 206 DGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
            G+    +               + D  ++++    +   I      + PR  RE
Sbjct: 169 GGKA-NFVHRPE----------RLLDIIDIMRKYRLEPKRIQF----VHPRSDRE 208

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEIS----DIAIKKAEELS 150
           ++  L QS A    R +  GCG G  +  +   S    + G+++S    +IA ++ + L 
Sbjct: 21  VVAALKQSNA---RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR 77

Query: 151 SSLPNAKFVSFLKADF-FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
                 + +  ++    +       +D          ++     A+ + + +F +P   +
Sbjct: 78  LPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137

Query: 210 IT 211
           +T
Sbjct: 138 VT 139

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 6/123 (4%)

Query: 91  IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS 150
           I  P        +     + R L  G G+G  +  ++     V   E  +   K A++  
Sbjct: 74  IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNL 133

Query: 151 SSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                 K V F   DF      E     F   F    EP     + +K+   L     + 
Sbjct: 134 KKFNLGKNVKFFNVDFKDAEVPEGI---FHAAFVDVREPW---HYLEKVHKSLMEGAPVG 187

Query: 211 TLM 213
            L+
Sbjct: 188 FLL 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.96
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.92
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.91
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.88
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.88
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.87
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.85
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.85
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.84
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.84
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.84
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.84
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.84
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.84
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.84
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.83
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.83
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.83
3ocj_A	305	Putative exported protein; structural genomics, PS	99.83
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.83
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.83
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.83
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.83
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.83
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.83
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.83
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.82
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.82
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.82
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.82
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.82
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.82
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.82
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.82
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.81
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.81
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.81
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.81
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.81
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.81
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.81
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.8
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.8
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.8
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.79
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.79
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.79
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.79
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.79
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.78
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.78
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.78
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.78
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.78
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.78
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.78
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.78
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.77
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.77
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.77
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.77
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.77
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.76
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.76
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.76
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.76
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.76
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.76
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.76
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.76
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.75
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.75
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.75
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.75
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.75
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.75
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.75
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.74
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.74
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.74
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.74
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.74
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.74
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.73
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.73
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.73
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.73
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.72
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.72
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.72
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.72
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.72
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.72
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.71
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.71
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.71
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.71
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.71
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.7
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.69
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.69
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.69
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.69
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.69
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.69
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.69
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.69
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.68
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.68
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.68
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.68
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.68
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.68
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.67
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.67
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.67
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.67
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.66
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.66
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.66
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.66
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.66
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.65
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.65
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.65
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.64
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.64
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.63
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.63
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.63
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.62
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.62
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.61
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.61
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.61
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.61
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.61
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.61
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.61
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.61
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.6
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.6
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.6
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.6
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.6
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.6
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.6
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.59
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.59
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.58
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.58
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.58
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.58
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.58
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.58
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.58
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.57
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.57
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.57
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.57
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.57
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.57
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.57
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.57
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.56
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.56
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.56
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.56
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.55
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.55
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.54
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.54
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.54
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.53
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.53
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.53
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.53
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.53
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.53
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.53
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.53
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.53
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.53
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.52
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.52
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.51
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.51
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.51
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.51
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.5
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.5
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.5
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.49
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.49
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.49
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.49
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.49
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.48
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.48
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.48
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.47
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.47
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.47
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.47
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.47
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.47
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.47
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.46
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.46
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.46
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.46
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.45
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.44
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.44
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.44
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.44
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.43
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.43
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.43
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.43
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.43
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.43
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.42
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.41
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.41
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.41
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.4
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.4
2o07_A	304	Spermidine synthase; structural genomics, structur	99.4
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.4
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.4
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.39
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.38
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.36
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.35
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.35
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.35
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.35
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.34
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.34
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.28
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.28
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.27
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.27
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.26
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.26
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.25
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.24
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.23
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.23
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.23
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.23
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.23
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.2
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.18
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.14
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.13
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.12
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.11
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.09
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.09
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.07
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.07
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.05
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.04
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.03
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.03
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	99.02
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.99
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.97
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.94
3khk_A	544	Type I restriction-modification system methylation	98.93
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.92
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.88
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.87
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.86
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.82
3lkd_A	542	Type I restriction-modification system methyltrans	98.8
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.8
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.78
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.76
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.72
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.69
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.62
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.5
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.5
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.46
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.4
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.38
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.36
3ufb_A	530	Type I restriction-modification system methyltran	98.23
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.21
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.14
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.1
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.99
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.96
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.95
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.93
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.89
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.82
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.79
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.65
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.61
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.57
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.48
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.39
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.37
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.27
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.25
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.15
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.12
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	97.01
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.0
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.89
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.81
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.76
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.72
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.72
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.54
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.24
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.17
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.92
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.91
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.8
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.66
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.65
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.55
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.38
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.3
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.29
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.27
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.19
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.17
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.16
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.16
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.14
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.07
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.06
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.94
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.94
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.83
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.82
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.74
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.62
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.57
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.46
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.32
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.29
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.25
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.23
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.2
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.09
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	94.09
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.07
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.04
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.94
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.93
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.71
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.55
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.52
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.43
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.31
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.28
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.2
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.18
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	93.12
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.06
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.04
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	92.88
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	92.82
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.69
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	92.66
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	92.64
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.63
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.57
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.56
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	92.54
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.43
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	92.43
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	92.41
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.4
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.38
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.36
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	92.36
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	92.35
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	92.33
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	92.31
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	92.26
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.23
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.17
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	92.16
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	92.12
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.11
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.1
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.92
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	91.9
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	91.71
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.71
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.63
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	91.53
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.5
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	91.16
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	91.07
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.02
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	90.96
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	90.94
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	90.8
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	90.66
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.65
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	90.64
1lnq_A	336	MTHK channels, potassium channel related protein;	90.57
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.53
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.4
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	90.36
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	90.25
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	90.19
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	90.18
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	90.09
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	89.86
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.84
3imf_A	257	Short chain dehydrogenase; structural genomics, in	89.8
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	89.75
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	89.72
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	89.66
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.52
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	89.37
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	89.36
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.32
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	89.31
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.26
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	88.66
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	88.47
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	88.35
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	88.15
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	88.13
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	88.11
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	88.02
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	87.77
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	87.59
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	87.54
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.45
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	87.43
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	87.36
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	87.27
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	87.01
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	86.88
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	86.78
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.68
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	86.06
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	85.91
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	85.8
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	85.79
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	85.79
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	85.74
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	85.68
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	85.58
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	85.56
1xkq_A	280	Short-chain reductase family member (5D234); parra	85.55
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	85.55
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	85.43
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	85.34
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	85.33
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	85.29
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	85.16
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	85.12
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	85.1
1xhl_A	297	Short-chain dehydrogenase/reductase family member	85.01
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	84.91
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	84.36
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	84.2
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	84.08
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	83.94
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	83.84
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	83.68
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	83.66
3rih_A	293	Short chain dehydrogenase or reductase; structural	83.56
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	83.48
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	83.35
4g65_A	461	TRK system potassium uptake protein TRKA; structur	83.16
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	83.1
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	82.93
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	82.91
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	82.82
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	82.74
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	82.56
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	82.52
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	82.49
3cxt_A	291	Dehydrogenase with different specificities; rossma	82.37
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	82.35
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	82.26
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	82.2
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	82.13
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	82.06
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	81.91
4dqx_A	277	Probable oxidoreductase protein; structural genomi	81.9
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	81.86
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	81.65
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	80.95
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	80.95
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	80.7

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.96  E-value=3.3e-28  Score=200.55  Aligned_cols=195  Identities=68%  Similarity=1.241  Sum_probs=175.1

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC
Q 024008           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~  154 (274)
                      ..+|++.|.....+|......+.+..++.....++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|+++....+
T Consensus        33 ~~~w~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~  112 (235)
T 3lcc_A           33 EGGWEKCWEEEITPWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSP  112 (235)
T ss_dssp             HHHHHHHHHTTCCTTCCSSCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSG
T ss_pred             HHHHHHHHhcCCCCcccCCCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccC
Confidence            47899999998888988888889999888776677899999999999999999999999999999999999999987755


Q ss_pred             CCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024008          155 NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE  234 (274)
Q Consensus       155 ~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      ...+++++.+|+.+..+.++||+|++..++++++++....+++++.++|+|||.+++..+.......++++.++.+++.+
T Consensus       113 ~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  192 (235)
T 3lcc_A          113 KAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEE  192 (235)
T ss_dssp             GGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHH
T ss_pred             CCcceEEEECchhcCCCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHH
Confidence            55679999999999777789999999999999987788899999999999999999999888777778888899999999


Q ss_pred             HHhcCCCcEEEEeecccccCCccchhHHHHhhhhh
Q 024008          235 VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSV  269 (274)
Q Consensus       235 ~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (274)
                      +++.+||+++.+......+.++.+.|.+.+++...
T Consensus       193 ~l~~~Gf~~~~~~~~~~~~~~~~g~e~~~~~~~~~  227 (235)
T 3lcc_A          193 VLVPIGFKAVSVEENPHAIPTRKGKEKLGRWKKIN  227 (235)
T ss_dssp             HHGGGTEEEEEEEECTTCCTTTTTSCEEEEEEESC
T ss_pred             HHHHcCCeEEEEEecCCccccccCHHHHhhhhhcc
Confidence            99999999999999999999988888877665443

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.92  E-value=2.9e-24  Score=178.60  Aligned_cols=175  Identities=18%  Similarity=0.297  Sum_probs=142.0

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024008           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~  152 (274)
                      ..+|++.|..+..+|....+.+.+.+++...  ..++.+|||+|||+|..+..|++.|++|+|+|+|+.+++.|+++...
T Consensus        33 ~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~  112 (252)
T 2gb4_A           33 LEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNL  112 (252)
T ss_dssp             HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccc
Confidence            4689999998888898888888887777543  23568999999999999999999999999999999999999877631


Q ss_pred             ----------C------CCCcceEEEEcccCCCCCC--CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          153 ----------L------PNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       153 ----------~------~~~~~v~~~~~d~~~~~~~--~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                                .      ....+++|+++|+.+..+.  ++||+|++..++++++++.+..+++++.++|+|||++++..+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          113 SYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             CEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence                      0      0125799999999985432  799999999999999887888999999999999999865432


Q ss_pred             c-CCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          215 P-ISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       215 ~-~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      . ......++++.++.+++.+++.. +|+++......
T Consensus       193 ~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~~~~  228 (252)
T 2gb4_A          193 SYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLEEVD  228 (252)
T ss_dssp             ECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEEEEE
T ss_pred             ecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEeccc
Confidence            2 22234467777899999999998 59998887544

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.91  E-value=4.2e-24  Score=172.18  Aligned_cols=163  Identities=18%  Similarity=0.295  Sum_probs=131.1

Q ss_pred             CccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC-----------C
Q 024008           88 PWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP-----------N  155 (274)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~-----------~  155 (274)
                      +|+...+.+.+.+++..... ++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.|+++.....           .
T Consensus         1 ~w~~~~~~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~   80 (203)
T 1pjz_A            1 GSHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA   80 (203)
T ss_dssp             --CCSSSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEE
T ss_pred             CCCcccCCHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCccccccccccccc
Confidence            48888889999888876543 56899999999999999999989999999999999999998864310           1


Q ss_pred             CcceEEEEcccCCCCCC--CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC-CCCCCCCCcccCHHHH
Q 024008          156 AKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI-SDHVGGPPYKVSVSDY  232 (274)
Q Consensus       156 ~~~v~~~~~d~~~~~~~--~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~-~~~~~~~~~~~~~~~~  232 (274)
                      ..+++|+++|+.+....  ++||+|++..++++++++....+++++.++|+|||++++..... .....++++.++.+++
T Consensus        81 ~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el  160 (203)
T 1pjz_A           81 APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWL  160 (203)
T ss_dssp             CSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHH
T ss_pred             CCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHH
Confidence            24799999999985443  68999999999999988788889999999999999844333222 2223456777899999


Q ss_pred             HHHHhcCCCcEEEEeeccc
Q 024008          233 EEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       233 ~~~~~~~Gf~~~~~~~~~~  251 (274)
                      .++++. ||+++.+.....
T Consensus       161 ~~~~~~-gf~i~~~~~~~~  178 (203)
T 1pjz_A          161 HRVMSG-NWEVTKVGGQDT  178 (203)
T ss_dssp             HHTSCS-SEEEEEEEESSC
T ss_pred             HHHhcC-CcEEEEeccccc
Confidence            999999 999988877654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.88  E-value=3.4e-22  Score=166.92  Aligned_cols=152  Identities=18%  Similarity=0.173  Sum_probs=122.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  173 (274)
                      +..++.....++.+|||+|||+|..+..+++    ++++|+|+|+|+.+++.|++++...+...+++++++|+.+.. .+
T Consensus        60 i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-~~  138 (261)
T 4gek_A           60 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-IE  138 (261)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC-CC
T ss_pred             HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc-cc
Confidence            3344444456778999999999999988876    477999999999999999999988777778999999998754 35


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------------CC---------------
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------------GG---------------  222 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~----------------~~---------------  222 (274)
                      +||+|+++.++++++++++..++++++++|+|||++++.+.......                .+               
T Consensus       139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~  218 (261)
T 4gek_A          139 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLEN  218 (261)
T ss_dssp             SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHH
T ss_pred             ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcc
Confidence            69999999999999988888999999999999999999775443210                00               


Q ss_pred             CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          223 PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      .....+.+++.++|+++||..+++....
T Consensus       219 ~~~~~s~~~~~~~L~~AGF~~ve~~fq~  246 (261)
T 4gek_A          219 VMLTDSVETHKARLHKAGFEHSELWFQC  246 (261)
T ss_dssp             HCCCBCHHHHHHHHHHHTCSEEEEEEEE
T ss_pred             cccCCCHHHHHHHHHHcCCCeEEEEEEe
Confidence            0123578899999999999988876543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.88  E-value=7.2e-22  Score=158.63  Aligned_cols=187  Identities=15%  Similarity=0.239  Sum_probs=144.2

Q ss_pred             chhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCC
Q 024008           77 GWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA  156 (274)
Q Consensus        77 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~  156 (274)
                      +|++.|......|. ..+.+.+..++.... ++ +|||+|||+|..+..+++.+.+++++|+++.+++.|+++....+. 
T Consensus         1 ~W~~~y~~~~~~~~-~~~~~~l~~~~~~~~-~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-   76 (202)
T 2kw5_A            1 MWDERFSQSEYVYG-TEPNDFLVSVANQIP-QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-   76 (202)
T ss_dssp             CCCCCCCCCCCCCC-CCCCSSHHHHHHHSC-SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-
T ss_pred             Chhhhhcccchhhc-cCchHHHHHHHHhCC-CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-
Confidence            57777776555454 345556666666533 34 999999999999999999889999999999999999999876543 


Q ss_pred             cceEEEEcccCCC-CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---CCC---CcccCH
Q 024008          157 KFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---GGP---PYKVSV  229 (274)
Q Consensus       157 ~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~---~~~---~~~~~~  229 (274)
                       ++.++.+|+.+. .++++||+|++.  +.+++.+....++.++.++|+|||.+++..+......   ..+   .+.++.
T Consensus        77 -~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (202)
T 2kw5_A           77 -KITTVQSNLADFDIVADAWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKL  153 (202)
T ss_dssp             -CEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCH
T ss_pred             -ceEEEEcChhhcCCCcCCccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCH
Confidence             699999999874 456789999985  4455667788999999999999999999887654331   111   345799


Q ss_pred             HHHHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhhhccc
Q 024008          230 SDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHS  272 (274)
Q Consensus       230 ~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (274)
                      +++.++++  ||+++.+.....+.........+..|.+..+++
T Consensus       154 ~~l~~~l~--Gf~v~~~~~~~~~~~~g~~~~~~~~~i~~~~~~  194 (202)
T 2kw5_A          154 ETLQSELP--SLNWLIANNLERNLDEGAYHQGKAALIQLLGQK  194 (202)
T ss_dssp             HHHHHHCS--SSCEEEEEEEEEECSCSSSSCCEEEEEEEEECC
T ss_pred             HHHHHHhc--CceEEEEEEEEeecCCCCCcccHHHHHHHHHHh
Confidence            99999999  999999999887754443445666777666554

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.87  E-value=6.9e-21  Score=153.00  Aligned_cols=148  Identities=17%  Similarity=0.165  Sum_probs=123.3

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~  173 (274)
                      ...+..++..   .+.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++.      .+++++.+|+.+ ..+++
T Consensus        31 ~~~l~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~  101 (203)
T 3h2b_A           31 RVLIEPWATG---VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPK  101 (203)
T ss_dssp             HHHHHHHHHH---CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCC
T ss_pred             HHHHHHHhcc---CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCC
Confidence            4455555543   2789999999999999999998999999999999999999884      468999999988 44568


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +||+|++..++++++.++...+++++.++|+|||.+++..+.....     .......++.+++.++++++||+++.+..
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence            9999999999999986677899999999999999999988655431     11122346899999999999999999988


Q ss_pred             ccc
Q 024008          249 NKL  251 (274)
Q Consensus       249 ~~~  251 (274)
                      ...
T Consensus       182 ~~~  184 (203)
T 3h2b_A          182 DPR  184 (203)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            665

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.85  E-value=2.4e-20  Score=157.74  Aligned_cols=153  Identities=17%  Similarity=0.185  Sum_probs=125.8

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCe
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~f  175 (274)
                      +..++.....++.+|||+|||+|..+..+++.+.+++|+|+++.+++.|+++....++.++++++.+|+.+.  .++++|
T Consensus        58 l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f  137 (285)
T 4htf_A           58 LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV  137 (285)
T ss_dssp             HHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred             HHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence            445566555567899999999999999999999999999999999999999998887767899999999884  367899


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC-----------------------CCCCCCcccCHHHH
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD-----------------------HVGGPPYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~  232 (274)
                      |+|++..+++++++  ...+++++.++|+|||++++..+....                       ........++.+++
T Consensus       138 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (285)
T 4htf_A          138 DLILFHAVLEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV  215 (285)
T ss_dssp             EEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred             eEEEECchhhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence            99999999999963  367999999999999999997753211                       01112345789999


Q ss_pred             HHHHhcCCCcEEEEeecccc
Q 024008          233 EEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       233 ~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      .++++++||+++.+......
T Consensus       216 ~~~l~~aGf~v~~~~~~~~~  235 (285)
T 4htf_A          216 YLWLEEAGWQIMGKTGVRVF  235 (285)
T ss_dssp             HHHHHHTTCEEEEEEEESSS
T ss_pred             HHHHHHCCCceeeeeeEEEe
Confidence            99999999999988876543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.85  E-value=1.1e-20  Score=161.00  Aligned_cols=159  Identities=13%  Similarity=0.131  Sum_probs=128.0

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCC--cceEEEEcccCCCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFTWCPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~  172 (274)
                      ......++.....++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|+++....+..  .+++++++|+.+...+
T Consensus        69 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  148 (299)
T 3g2m_A           69 TSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD  148 (299)
T ss_dssp             HHHHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS
T ss_pred             cHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC
Confidence            44555566555555679999999999999999999999999999999999999998776421  4699999999986657


Q ss_pred             CCeeEEEec-ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------------------------
Q 024008          173 ELFDLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------------------------  220 (274)
Q Consensus       173 ~~fD~v~~~-~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-------------------------------  220 (274)
                      ++||+|++. .++++++++....+++++.++|+|||++++..+......                               
T Consensus       149 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  228 (299)
T 3g2m_A          149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQ  228 (299)
T ss_dssp             CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEE
T ss_pred             CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEE
Confidence            899998865 678888877788999999999999999999876553110                               


Q ss_pred             ----------CCC-------CcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          221 ----------GGP-------PYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       221 ----------~~~-------~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                                .+.       ...++.+++.++++++||+++.+.....+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g  278 (299)
T 3g2m_A          229 EITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGG  278 (299)
T ss_dssp             EEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTS
T ss_pred             EEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCC
Confidence                      000       013599999999999999999999876544

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.84  E-value=2e-20  Score=154.59  Aligned_cols=137  Identities=17%  Similarity=0.134  Sum_probs=115.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..+++.+.+++|+|+++.+++.|+++...     +++++.+|+.+..++++||+|++..+++|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  115 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYDNIVLTHVLEH  115 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCcccEEEEhhHHHh
Confidence            3567999999999999999999888999999999999999998753     59999999988767789999999999999


Q ss_pred             cChhHHHHHHHHHH-hcccCCcEEEEEEccCCCC----------------------CCCCCcccCHHHHHHHHhcCCCcE
Q 024008          187 IEPEMRAAWAQKIK-DFLKPDGELITLMFPISDH----------------------VGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       187 ~~~~~~~~~l~~l~-~~L~~gG~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      +++  ...+++++. ++|+|||++++........                      ..+....++.+++.++++++||++
T Consensus       116 ~~~--~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  193 (250)
T 2p7i_A          116 IDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV  193 (250)
T ss_dssp             CSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             hcC--HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence            964  368999999 9999999999987554311                      011123468999999999999999


Q ss_pred             EEEeecc
Q 024008          244 ISIVDNK  250 (274)
Q Consensus       244 ~~~~~~~  250 (274)
                      +.+....
T Consensus       194 ~~~~~~~  200 (250)
T 2p7i_A          194 TYRSGIF  200 (250)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeeE
Confidence            9987643

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.84  E-value=4.2e-20  Score=151.67  Aligned_cols=147  Identities=16%  Similarity=0.174  Sum_probs=121.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++.  +.+++|+|+++.+++.|+++....+   +++++.+|+.+....++||+|++..++
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~fD~v~~~~~l  119 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEEKYDMVVSALSI  119 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCSCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCCCceEEEEeCcc
Confidence            45689999999999999999884  8899999999999999999987663   799999999986555899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------------------CCCCCcccCHHHHHH
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------------------VGGPPYKVSVSDYEE  234 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~  234 (274)
                      ++++++....+++++.++|+|||.+++.+......                              ..+....++.+++.+
T Consensus       120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (234)
T 3dtn_A          120 HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLN  199 (234)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHH
Confidence            99987777789999999999999999987543221                              011233468899999


Q ss_pred             HHhcCCCcEEEEeecccccCCc
Q 024008          235 VLQPMGFQAISIVDNKLAIGPR  256 (274)
Q Consensus       235 ~~~~~Gf~~~~~~~~~~~~~~~  256 (274)
                      +++++||+.+++......+..+
T Consensus       200 ll~~aGF~~v~~~~~~~~~~~~  221 (234)
T 3dtn_A          200 WLKEAGFRDVSCIYKYYQFAVM  221 (234)
T ss_dssp             HHHHTTCEEEEEEEEETTEEEE
T ss_pred             HHHHcCCCceeeeeeecceeEE
Confidence            9999999999998776655443

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.84  E-value=2.5e-20  Score=150.65  Aligned_cols=150  Identities=14%  Similarity=0.076  Sum_probs=124.6

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  174 (274)
                      ...+..++... .++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++.       ++.+..+|+....++++
T Consensus        31 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~  102 (211)
T 3e23_A           31 SATLTKFLGEL-PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDA  102 (211)
T ss_dssp             CHHHHHHHTTS-CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSC
T ss_pred             hHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCc
Confidence            55666666643 35679999999999999999998999999999999999999987       36788899988667889


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----CCCCcccCHHHHHHHHhcCC-CcEEEEeec
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----GGPPYKVSVSDYEEVLQPMG-FQAISIVDN  249 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~G-f~~~~~~~~  249 (274)
                      ||+|++..++++++.+....+++++.++|+|||++++.........    ......++.+++.++++++| |+++.+...
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          103 YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESS  182 (211)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred             EEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence            9999999999999877888999999999999999999875443221    11122368999999999999 999999876


Q ss_pred             ccc
Q 024008          250 KLA  252 (274)
Q Consensus       250 ~~~  252 (274)
                      ...
T Consensus       183 ~~~  185 (211)
T 3e23_A          183 EGK  185 (211)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.84  E-value=1.7e-20  Score=153.78  Aligned_cols=148  Identities=21%  Similarity=0.232  Sum_probs=121.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCC-CCCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFT-WCPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~-~~~~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+.    ..+++++.+|+.. ..+.++||+|++.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  108 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ  108 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence            3568999999999999999999899999999999999999999887654    2368999999987 4456889999999


Q ss_pred             ccccccC-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCC--------------------------CC----CCcccCHH
Q 024008          182 TFFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPISDHV--------------------------GG----PPYKVSVS  230 (274)
Q Consensus       182 ~~~~~~~-~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~--------------------------~~----~~~~~~~~  230 (274)
                      .++++++ +.....+++++.++|+|||.+++..+......                          .+    ....++.+
T Consensus       109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (235)
T 3sm3_A          109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEK  188 (235)
T ss_dssp             SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHH
T ss_pred             chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHH
Confidence            9999985 35566899999999999999999876542110                          00    01346899


Q ss_pred             HHHHHHhcCCCcEEEEeecccccC
Q 024008          231 DYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       231 ~~~~~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      ++.++++++||+++.+........
T Consensus       189 ~l~~ll~~aGf~~~~~~~~~~~~~  212 (235)
T 3sm3_A          189 ELVFLLTDCRFEIDYFRVKELETR  212 (235)
T ss_dssp             HHHHHHHTTTEEEEEEEEEEEECT
T ss_pred             HHHHHHHHcCCEEEEEEecceeec
Confidence            999999999999999988655444

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.84  E-value=6.8e-20  Score=154.55  Aligned_cols=162  Identities=20%  Similarity=0.250  Sum_probs=126.9

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      .+.+.+.  ..++.+|||+|||+|..+..+++++.+|+|+|+++.+++.++++.      .+++++.+|+.....+++||
T Consensus        48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD  119 (279)
T 3ccf_A           48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLD  119 (279)
T ss_dssp             HHHHHHC--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEE
T ss_pred             HHHHHhC--CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcC
Confidence            3444443  345689999999999999999998899999999999999999886      46889999998855568999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------------CCCCCcccCHHHHHHHH
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------------VGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~  236 (274)
                      +|++..++++++  +...++.++.++|+|||++++........                    ...+....+.+++.+++
T Consensus       120 ~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (279)
T 3ccf_A          120 AVFSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL  197 (279)
T ss_dssp             EEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred             EEEEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence            999999999985  34678999999999999999877654321                    01112345899999999


Q ss_pred             hcCCCcEEEEeecccccCCccchhHHHHhhhh
Q 024008          237 QPMGFQAISIVDNKLAIGPRKGREKLGRWKRS  268 (274)
Q Consensus       237 ~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (274)
                      +++||+++.+.....+.....+.+.+..|.+.
T Consensus       198 ~~aGf~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (279)
T 3ccf_A          198 EKQGFDVTYAALFNRPTTLAEGEFGMANWIQM  229 (279)
T ss_dssp             HHHTEEEEEEEEEECCEECSSGGGHHHHHHHH
T ss_pred             HHcCCEEEEEEEecccccccCCHHHHHHHHHH
Confidence            99999999888766655443245566666654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.84  E-value=1.6e-19  Score=153.56  Aligned_cols=143  Identities=17%  Similarity=0.176  Sum_probs=119.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++. +.+++|+|+++.+++.|+++....+..++++++.+|+.+ +.++++||+|++..++
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  160 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  160 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence            45679999999999999999885 789999999999999999998877776789999999988 4456899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-----------CCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-----------GPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      +|+++  ...++.++.++|+|||++++.+........           ..+...+..++.++++++||+++.+.....
T Consensus       161 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~  236 (297)
T 2o57_A          161 LHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPD  236 (297)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECHH
T ss_pred             hhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEECch
Confidence            99964  578999999999999999998754432111           112234889999999999999999887543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.84  E-value=1.5e-19  Score=144.43  Aligned_cols=164  Identities=13%  Similarity=0.201  Sum_probs=128.9

Q ss_pred             cccchhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008           74 SSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        74 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      ...+|...|...       .....+..++.  ..++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....
T Consensus         7 ~~~~~~~~~~~~-------~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~   77 (199)
T 2xvm_A            7 DENYFTDKYELT-------RTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIE   77 (199)
T ss_dssp             CTTHHHHHHTCC-------CCCHHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             chHHHhhhhccc-------cccHHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhC
Confidence            346677777542       22444555554  345679999999999999999988899999999999999999988766


Q ss_pred             CCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CC--CCCcccCHH
Q 024008          154 PNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VG--GPPYKVSVS  230 (274)
Q Consensus       154 ~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-~~--~~~~~~~~~  230 (274)
                      +. .+++++.+|+.+....++||+|++..++++++++....+++++.++|+|||.+++........ ..  ...+.++.+
T Consensus        78 ~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~  156 (199)
T 2xvm_A           78 NL-DNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEG  156 (199)
T ss_dssp             TC-TTEEEEECCGGGCCCCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTT
T ss_pred             CC-CCcEEEEcchhhCCCCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHH
Confidence            54 359999999987444788999999999999987778899999999999999987765433222 11  123456899


Q ss_pred             HHHHHHhcCCCcEEEEeec
Q 024008          231 DYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       231 ~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++.++++.  |+++...+.
T Consensus       157 ~l~~~~~~--f~~~~~~~~  173 (199)
T 2xvm_A          157 ELRRYYEG--WERVKYNED  173 (199)
T ss_dssp             HHHHHTTT--SEEEEEECC
T ss_pred             HHHHHhcC--CeEEEeccc
Confidence            99999987  999988765

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.83  E-value=1.6e-19  Score=153.98  Aligned_cols=153  Identities=15%  Similarity=0.136  Sum_probs=125.5

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      +..++.... .++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++....++.++++++.+|+.+.  +++|
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~f  138 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPV  138 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCC
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCc
Confidence            344555543 35579999999999999999985 7999999999999999999998888777899999999876  6899


Q ss_pred             eEEEeccccccc-------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----C-------------------CCC
Q 024008          176 DLIFDYTFFCAI-------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----G-------------------GPP  224 (274)
Q Consensus       176 D~v~~~~~~~~~-------~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----~-------------------~~~  224 (274)
                      |+|++..+++++       ..+....+++++.++|+|||++++..+......     .                   ...
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  218 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG  218 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence            999999999999       335678999999999999999999876543221     0                   011


Q ss_pred             cccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          225 YKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      ...+.+++.++++++||+++.+......
T Consensus       219 ~~~s~~~~~~~l~~aGf~~~~~~~~~~~  246 (302)
T 3hem_A          219 RLPRISQVDYYSSNAGWKVERYHRIGAN  246 (302)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred             CCCCHHHHHHHHHhCCcEEEEEEeCchh
Confidence            3357899999999999999999875543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.83  E-value=1.5e-19  Score=150.83  Aligned_cols=155  Identities=21%  Similarity=0.257  Sum_probs=126.6

Q ss_pred             cHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCC
Q 024008           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP  171 (274)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  171 (274)
                      ......++..... ++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++....   ++++++.+|+.+ ..+
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~  117 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFP  117 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCC
Confidence            4445566665543 4579999999999999999885 889999999999999999988665   579999999988 445


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-----------CCcccCHHHHHHHHhcCC
Q 024008          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-----------PPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~G  240 (274)
                      +++||+|++..+++|+++++...+++++.++|+|||.+++..+........           ....++.+++.++++++|
T Consensus       118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  197 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACN  197 (266)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTT
T ss_pred             CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcC
Confidence            789999999999999987888999999999999999999987654431000           112358999999999999


Q ss_pred             CcEEEEeecccc
Q 024008          241 FQAISIVDNKLA  252 (274)
Q Consensus       241 f~~~~~~~~~~~  252 (274)
                      |+++.+......
T Consensus       198 f~~~~~~~~~~~  209 (266)
T 3ujc_A          198 FKNVVSKDLSDY  209 (266)
T ss_dssp             CEEEEEEECHHH
T ss_pred             CeEEEEEeCCHH
Confidence            999998875543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.83  E-value=1.6e-19  Score=146.36  Aligned_cols=149  Identities=19%  Similarity=0.258  Sum_probs=118.4

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      ..+...+.. ..++.+|||+|||+|..+..+++.+.+++|+|+++.+++.+++    .+. .+++++.+|+.+..+.++|
T Consensus        35 ~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~~~~~  108 (218)
T 3ou2_A           35 PAALERLRA-GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTPDRQW  108 (218)
T ss_dssp             HHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCCSSCE
T ss_pred             HHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCCCCce
Confidence            334444442 2345799999999999999999888899999999999999988    111 4699999999988777899


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------------------CCC-----CcccCHHHH
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------------------GGP-----PYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~------------------~~~-----~~~~~~~~~  232 (274)
                      |+|++..++++++++....+++++.++|+|||.+++..+......                  .+.     ...++.+++
T Consensus       109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (218)
T 3ou2_A          109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAEL  188 (218)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHH
T ss_pred             eEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHH
Confidence            999999999999877778999999999999999999876553210                  011     113589999


Q ss_pred             HHHHhcCCCcEEEEeecc
Q 024008          233 EEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       233 ~~~~~~~Gf~~~~~~~~~  250 (274)
                      .++++++||++.......
T Consensus       189 ~~~l~~aGf~v~~~~~~~  206 (218)
T 3ou2_A          189 TERLTALGWSCSVDEVHP  206 (218)
T ss_dssp             HHHHHHTTEEEEEEEEET
T ss_pred             HHHHHHCCCEEEeeeccc
Confidence            999999999966655543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.83  E-value=1.4e-19  Score=154.62  Aligned_cols=144  Identities=17%  Similarity=0.203  Sum_probs=119.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..++.   ++.+|+|+|+++.+++.|+++....+..++++++.+|+.+...+++||+|+++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            45668999999999999999852   577999999999999999999988887778999999999854448999999999


Q ss_pred             cccccC-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------------------CCCcccCHHHHH
Q 024008          183 FFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------------------GPPYKVSVSDYE  233 (274)
Q Consensus       183 ~~~~~~-~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~----------------------------~~~~~~~~~~~~  233 (274)
                      ++++++ +.....+++++.++|+|||++++.++.......                            +....++.+++.
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR  275 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence            999985 445557899999999999999998865432110                            011235899999


Q ss_pred             HHHhcCCCcEEEEeec
Q 024008          234 EVLQPMGFQAISIVDN  249 (274)
Q Consensus       234 ~~~~~~Gf~~~~~~~~  249 (274)
                      ++++++||+++.+...
T Consensus       276 ~~l~~aGF~~v~~~~~  291 (305)
T 3ocj_A          276 AQLEEAGFTDLRFEDD  291 (305)
T ss_dssp             HHHHHTTCEEEEEECC
T ss_pred             HHHHHCCCEEEEEEcc
Confidence            9999999999998863

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.83  E-value=6.4e-20  Score=149.08  Aligned_cols=139  Identities=21%  Similarity=0.221  Sum_probs=115.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++..     .+++++.+|+.+....++||+|++..++++
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  118 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSIDTIVSTYAFHH  118 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCSEEEEESCGGG
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeEEEEECcchhc
Confidence            366899999999999999999989999999999999999999875     368999999998444489999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------CC---------CCcccCHHHHHHHHhcCCCcEEEE
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------GG---------PPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----------~~---------~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      +++.....++.++.++|+|||.+++.+.......           .+         ..+..+.+++.++++++||+++..
T Consensus       119 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~  198 (220)
T 3hnr_A          119 LTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT  198 (220)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred             CChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence            9877666799999999999999999874432110           00         113347899999999999998877


Q ss_pred             eecc
Q 024008          247 VDNK  250 (274)
Q Consensus       247 ~~~~  250 (274)
                      ....
T Consensus       199 ~~~~  202 (220)
T 3hnr_A          199 RLNH  202 (220)
T ss_dssp             ECSS
T ss_pred             eccc
Confidence            7653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.83  E-value=6.1e-20  Score=149.13  Aligned_cols=141  Identities=19%  Similarity=0.207  Sum_probs=118.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++.   ..+++++|+++.+++.++++....+.. +++++.+|+.. ..+.++||+|++..
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeEEEeeh
Confidence            45679999999999999999874   479999999999999999998776653 69999999987 44567899999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC--cccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP--YKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ++++++  +...+++++.++|+|||.+++.++.......+..  ..++.+++.++++++||+++.+....
T Consensus       115 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  182 (219)
T 3dh0_A          115 TFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG  182 (219)
T ss_dssp             CGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET
T ss_pred             hhhhcC--CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC
Confidence            999985  3468899999999999999998877655433332  34689999999999999998887643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.83  E-value=1.8e-19  Score=154.48  Aligned_cols=141  Identities=16%  Similarity=0.132  Sum_probs=119.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++....++.++++++.+|+.+ ..++++||+|++..++
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST  195 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence            34579999999999999999886 889999999999999999999988877789999999988 4456899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG------------PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ++++   ...+++++.++|+|||++++...........            .+...+.+++.++++++||+++.+....
T Consensus       196 ~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~  270 (312)
T 3vc1_A          196 MYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLT  270 (312)
T ss_dssp             GGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred             hhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence            9994   6789999999999999999887655432211            0123578999999999999999998854

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.83  E-value=1.1e-19  Score=147.75  Aligned_cols=160  Identities=9%  Similarity=0.146  Sum_probs=120.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCc----ceEEEEcccCC-CCCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAK----FVSFLKADFFT-WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~-~~~~~~fD~v~  179 (274)
                      .++.+|||+|||+|..+..+++.+  .+++|+|+++.+++.|+++....++.+    +++++.+|+.. ..+.++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            456899999999999999999855  699999999999999999987665543    79999999966 33457899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------CCCCcccCHHHHH----HHHhcCCCcEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------GGPPYKVSVSDYE----EVLQPMGFQAI  244 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----------~~~~~~~~~~~~~----~~~~~~Gf~~~  244 (274)
                      +..++++++++....+++++.++|+|||.+++.........           ....+.++.+++.    ++++.+||++.
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~  187 (219)
T 3jwg_A          108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVR  187 (219)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEE
T ss_pred             EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEE
Confidence            99999999877778999999999999997776654332110           1122346888998    88999999775


Q ss_pred             EEeecccccCCccchhHHHHhhh
Q 024008          245 SIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      .... ...........++++|.+
T Consensus       188 ~~~~-g~~~~~~g~~~qi~~~~~  209 (219)
T 3jwg_A          188 FLQI-GEIDDEFGSPTQMGVFTL  209 (219)
T ss_dssp             EEEE-SCCCTTSCCSEEEEEEEE
T ss_pred             EEec-CCccccCCCCeEEEEEec
Confidence            5432 222223333445555544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.83  E-value=1.7e-19  Score=150.02  Aligned_cols=152  Identities=16%  Similarity=0.131  Sum_probs=121.5

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024008           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  172 (274)
                      ...+..++.... .++.+|||+|||+|..+..+++ .+.+++|+|+++.+++.|+++....++.++++++.+|+.+..++
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  101 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN  101 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence            444555555543 4557999999999999999987 47899999999999999999998887777899999999885557


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------CCCCcccCHHHHHHHHhcCCC
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------GGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~Gf  241 (274)
                      ++||+|++..++++++  +...+++++.++|+|||.+++.+.......           .......+..++.++++++||
T Consensus       102 ~~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  179 (256)
T 1nkv_A          102 EKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGY  179 (256)
T ss_dssp             SCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTB
T ss_pred             CCCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCC
Confidence            8899999999999885  346789999999999999998764321110           011134588999999999999


Q ss_pred             cEEEEee
Q 024008          242 QAISIVD  248 (274)
Q Consensus       242 ~~~~~~~  248 (274)
                      +++.+..
T Consensus       180 ~~~~~~~  186 (256)
T 1nkv_A          180 DVVEMVL  186 (256)
T ss_dssp             CCCEEEE
T ss_pred             eeEEEEe
Confidence            9887654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.83  E-value=2.2e-19  Score=149.80  Aligned_cols=143  Identities=16%  Similarity=0.132  Sum_probs=117.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+.+++|+|+++.+++.|+++....+. .+++++.+|+.. ..++++||+|+++.+++
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            4568999999999999999999878999999999999999999877665 369999999988 45568999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      ++++  ...++.++.++|+|||++++.+......              .......++.+++.++++++||+++.+.....
T Consensus       115 ~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~  192 (260)
T 1vl5_A          115 HFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHK  192 (260)
T ss_dssp             GCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred             hcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEeec
Confidence            9963  4688999999999999999876443221              01112335889999999999999988887654


Q ss_pred             c
Q 024008          252 A  252 (274)
Q Consensus       252 ~  252 (274)
                      .
T Consensus       193 ~  193 (260)
T 1vl5_A          193 T  193 (260)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.83  E-value=8.9e-20  Score=150.34  Aligned_cols=141  Identities=21%  Similarity=0.288  Sum_probs=116.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++...    .+++++.+|+.+ ..++++||+|++..++
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  126 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG----PDLSFIKGDLSSLPFENEQFEAIMAINSL  126 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB----TTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccc----CCceEEEcchhcCCCCCCCccEEEEcChH
Confidence            34678999999999999999999999999999999999999988522    569999999988 4457899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-----------CCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-----------GPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      +|++  +...++.++.++|+|||++++..++......           .....++..++.++++++||+++........
T Consensus       127 ~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  203 (242)
T 3l8d_A          127 EWTE--EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKR  203 (242)
T ss_dssp             TSSS--CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEEECT
T ss_pred             hhcc--CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeeccccc
Confidence            9985  3467899999999999999998865532211           1122368899999999999999998865433

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.82  E-value=6.1e-19  Score=147.69  Aligned_cols=153  Identities=15%  Similarity=0.098  Sum_probs=123.0

Q ss_pred             cHHHHHHHhcCC--CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C
Q 024008           95 APIIVHLHQSGA--LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C  170 (274)
Q Consensus        95 ~~~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~  170 (274)
                      .......+....  .++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++....++.++++++.+|+.+. .
T Consensus        31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  110 (267)
T 3kkz_A           31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF  110 (267)
T ss_dssp             HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred             HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC
Confidence            344555555543  45689999999999999999985 4599999999999999999998888878899999999883 4


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------CCCcccCHHHHHHHHhcCC
Q 024008          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------GPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~G  240 (274)
                      +.++||+|++..++++++   ...+++++.++|+|||++++.+........          ..+...+..++.++++++|
T Consensus       111 ~~~~fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  187 (267)
T 3kkz_A          111 RNEELDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAG  187 (267)
T ss_dssp             CTTCEEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCC
Confidence            568999999999999984   367899999999999999987754221100          0123347899999999999


Q ss_pred             CcEEEEeecc
Q 024008          241 FQAISIVDNK  250 (274)
Q Consensus       241 f~~~~~~~~~  250 (274)
                      |+++.+....
T Consensus       188 f~~v~~~~~~  197 (267)
T 3kkz_A          188 YLPVATFILP  197 (267)
T ss_dssp             EEEEEEEECC
T ss_pred             CEEEEEEECC
Confidence            9999887754

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.82  E-value=1.9e-19  Score=152.29  Aligned_cols=152  Identities=20%  Similarity=0.166  Sum_probs=122.6

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      +..++.... .++.+|||+|||+|..+..+++ .+.+|+|+|+++.+++.++++....+..++++++.+|+.+..  ++|
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~f  130 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPV  130 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCC
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCe
Confidence            334455443 3457999999999999999984 677999999999999999999988777778999999997643  889


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----C--------------------CCcccCHHH
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----G--------------------PPYKVSVSD  231 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~----~--------------------~~~~~~~~~  231 (274)
                      |+|++..+++|++++....+++++.++|+|||.+++..........    +                    .....+.++
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  210 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM  210 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence            9999999999997667788999999999999999987765432100    0                    012248999


Q ss_pred             HHHHHhcCCCcEEEEeeccc
Q 024008          232 YEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      +.++++++||+++.+.....
T Consensus       211 ~~~~l~~aGf~~~~~~~~~~  230 (287)
T 1kpg_A          211 VQECASANGFTVTRVQSLQP  230 (287)
T ss_dssp             HHHHHHTTTCEEEEEEECHH
T ss_pred             HHHHHHhCCcEEEEEEeCcH
Confidence            99999999999999887543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.82  E-value=1.8e-19  Score=148.66  Aligned_cols=142  Identities=13%  Similarity=0.139  Sum_probs=116.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~  185 (274)
                      ++.+|||+|||+|..+..+++.+ .+++++|+++.+++.|+++....+ ..+++++.+|+... .+.++||+|++..+++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            46899999999999999998864 499999999999999999987653 24689999998774 3456899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +++++....++.++.++|+|||++++.+......    .....+..+.+++.++++++||+++.+....
T Consensus       158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  226 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE  226 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred             hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence            9987777899999999999999999977543320    1112233589999999999999999987753

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.82  E-value=2.4e-19  Score=150.51  Aligned_cols=154  Identities=21%  Similarity=0.249  Sum_probs=124.5

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCC
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTEL  174 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~  174 (274)
                      ...++.... .++.+|||+|||+|..+..+++ .+.+|+|+|+++.+++.++++....++.++++++.+|+.+ ..++++
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  129 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDAS  129 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCC
Confidence            334444443 3567999999999999999987 5789999999999999999999888777789999999988 445679


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------CCCcccCHHHHHHHHhcCC
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------------GPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~G  240 (274)
                      ||+|++..+++++++  ...+++++.++|+|||++++.++.......              ......+.+++.++++++|
T Consensus       130 fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  207 (273)
T 3bus_A          130 FDAVWALESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE  207 (273)
T ss_dssp             EEEEEEESCTTTSSC--HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred             ccEEEEechhhhCCC--HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence            999999999999853  368899999999999999988765432110              1223468899999999999


Q ss_pred             CcEEEEeeccccc
Q 024008          241 FQAISIVDNKLAI  253 (274)
Q Consensus       241 f~~~~~~~~~~~~  253 (274)
                      |+++.+.......
T Consensus       208 f~~~~~~~~~~~~  220 (273)
T 3bus_A          208 LVVTSTVDISAQA  220 (273)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CeEEEEEECcHhH
Confidence            9999888865443

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.82  E-value=2.2e-20  Score=156.32  Aligned_cols=177  Identities=15%  Similarity=0.103  Sum_probs=124.6

Q ss_pred             cccchhHhhhcCCCCccCC----CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHH
Q 024008           74 SSGGWEKCWEEGLTPWDIG----QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEE  148 (274)
Q Consensus        74 ~~~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~  148 (274)
                      ...+|+.+|..........    -+...+.+++.....++.+|||||||+|..+..++..++ +|+|+|+|+.+++.|++
T Consensus        17 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~   96 (263)
T 2a14_A           17 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEK   96 (263)
T ss_dssp             HHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHH
Confidence            3467888887654321100    011223333332344567999999999988887777776 79999999999999998


Q ss_pred             HhhcCCC----------------------------CcceE-EEEcccCCCC-----CCCCeeEEEecccccccC--hhHH
Q 024008          149 LSSSLPN----------------------------AKFVS-FLKADFFTWC-----PTELFDLIFDYTFFCAIE--PEMR  192 (274)
Q Consensus       149 ~~~~~~~----------------------------~~~v~-~~~~d~~~~~-----~~~~fD~v~~~~~~~~~~--~~~~  192 (274)
                      ++.....                            ..++. ++.+|+.+..     ..++||+|+++.+++++.  .++.
T Consensus        97 ~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~  176 (263)
T 2a14_A           97 WLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAY  176 (263)
T ss_dssp             HHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHH
T ss_pred             HHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHH
Confidence            7654320                            01243 8899998732     246899999999999863  3567


Q ss_pred             HHHHHHHHhcccCCcEEEEEEccCCCC-C-C---CCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          193 AAWAQKIKDFLKPDGELITLMFPISDH-V-G---GPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       193 ~~~l~~l~~~L~~gG~l~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ..++.+++++|||||.+++........ . .   ...+.++.+++.++++++||+++.+....
T Consensus       177 ~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~  239 (263)
T 2a14_A          177 RAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP  239 (263)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence            789999999999999999986432211 0 0   01234689999999999999999988754

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.82  E-value=2.4e-19  Score=149.76  Aligned_cols=145  Identities=15%  Similarity=0.157  Sum_probs=115.9

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  177 (274)
                      +..++.....++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|+++..      +++++.+|+.+...+++||+
T Consensus        40 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~fD~  113 (263)
T 3pfg_A           40 LAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRRFSA  113 (263)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCCEEE
T ss_pred             HHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCCcCE
Confidence            334443333456899999999999999999999999999999999999999863      68999999998655789999


Q ss_pred             EEecc-cccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------------------------------
Q 024008          178 IFDYT-FFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------------------------------  220 (274)
Q Consensus       178 v~~~~-~~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----------------------------------  220 (274)
                      |++.. ++++++. +....+++++.++|+|||.+++..+......                                   
T Consensus       114 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (263)
T 3pfg_A          114 VTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVH  193 (263)
T ss_dssp             EEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEE
Confidence            99998 9999854 5677899999999999999999643222110                                   


Q ss_pred             -----CC-C---------CcccCHHHHHHHHhcCCCcEEEEee
Q 024008          221 -----GG-P---------PYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       221 -----~~-~---------~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                           .+ .         ...++.+++.++|+++||+++.+..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~  236 (263)
T 3pfg_A          194 YLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPG  236 (263)
T ss_dssp             EEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESS
T ss_pred             EEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeC
Confidence                 00 0         1225799999999999999988754

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.82  E-value=3.3e-19  Score=144.76  Aligned_cols=140  Identities=11%  Similarity=0.141  Sum_probs=113.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCc----ceEEEEcccCCC-CCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAK----FVSFLKADFFTW-CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~-~~~~~fD~v~  179 (274)
                      .++.+|||+|||+|..+..+++.+  .+++|+|+++.+++.|++++...++..    +++++.+|+... .+.++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            456899999999999999998854  699999999999999999988776654    799999998653 3447899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC------C-----CCCCCCcccCHHHHH----HHHhcCCCcEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS------D-----HVGGPPYKVSVSDYE----EVLQPMGFQAI  244 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~------~-----~~~~~~~~~~~~~~~----~~~~~~Gf~~~  244 (274)
                      +..++++++++....+++++.++|+|||.+++......      .     ......+.++.+++.    ++++.+||++.
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~  187 (217)
T 3jwh_A          108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQ  187 (217)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEE
T ss_pred             eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEE
Confidence            99999999887888999999999999998777654321      0     011223446899998    99999999875


Q ss_pred             EE
Q 024008          245 SI  246 (274)
Q Consensus       245 ~~  246 (274)
                      ..
T Consensus       188 ~~  189 (217)
T 3jwh_A          188 FQ  189 (217)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.82  E-value=4.7e-19  Score=146.09  Aligned_cols=144  Identities=15%  Similarity=0.170  Sum_probs=118.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+. .+++++.+|+.. ..++++||+|++..++
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAA   97 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccCCCCCCcEEEEEECCch
Confidence            34568999999999999999999888999999999999999999876654 369999999987 4456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ++++  +...++.++.++|+|||.+++........              .......++.+++.++++++||.++.+....
T Consensus        98 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~  175 (239)
T 1xxl_A           98 HHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN  175 (239)
T ss_dssp             GGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEeec
Confidence            9985  34688999999999999999976544221              0111234689999999999999999888865


Q ss_pred             cc
Q 024008          251 LA  252 (274)
Q Consensus       251 ~~  252 (274)
                      ..
T Consensus       176 ~~  177 (239)
T 1xxl_A          176 LP  177 (239)
T ss_dssp             EE
T ss_pred             Cc
Confidence            43

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.81  E-value=2.6e-19  Score=148.68  Aligned_cols=142  Identities=19%  Similarity=0.272  Sum_probs=114.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++.+. +|+|+|+++.+++.|+++..    ..+++++.+|+.. ..+.++||+|++..++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  118 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSLAL  118 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEchhh
Confidence            3568999999999999999999877 99999999999999999986    2579999999987 4456899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------CCC-------------------------CCcccCH
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------VGG-------------------------PPYKVSV  229 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----------~~~-------------------------~~~~~~~  229 (274)
                      ++++  +...+++++.++|+|||.+++...++...          ..+                         ..+..+.
T Consensus       119 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  196 (253)
T 3g5l_A          119 HYIA--SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTV  196 (253)
T ss_dssp             GGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCH
T ss_pred             hhhh--hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCH
Confidence            9984  45789999999999999999875432100          000                         0112389


Q ss_pred             HHHHHHHhcCCCcEEEEeecccccC
Q 024008          230 SDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       230 ~~~~~~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      +++.++++++||+++.+.+......
T Consensus       197 ~~~~~~l~~aGF~~~~~~e~~~~~~  221 (253)
T 3g5l_A          197 TTYIQTLLKNGFQINSVIEPEPAPE  221 (253)
T ss_dssp             HHHHHHHHHTTEEEEEEECCCCCGG
T ss_pred             HHHHHHHHHcCCeeeeeecCCCchh
Confidence            9999999999999999988654433

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.81  E-value=5.6e-19  Score=146.58  Aligned_cols=150  Identities=15%  Similarity=0.090  Sum_probs=120.7

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCC
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTEL  174 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~  174 (274)
                      ...++.... .++.+|||+|||+|..+..+++.+ .+++++|+++.+++.++++....   .+++++.+|+... .++++
T Consensus        82 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~  158 (254)
T 1xtp_A           82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNT  158 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSC
T ss_pred             HHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCC
Confidence            345555443 346899999999999999998864 47999999999999999998654   5799999999873 45678


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ||+|++..++++++++....++.++.++|+|||++++........     .....+..+.+++.++++++||+++.+...
T Consensus       159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  238 (254)
T 1xtp_A          159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ  238 (254)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred             eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence            999999999999987778899999999999999999987532211     112233468999999999999999988765


Q ss_pred             c
Q 024008          250 K  250 (274)
Q Consensus       250 ~  250 (274)
                      .
T Consensus       239 ~  239 (254)
T 1xtp_A          239 E  239 (254)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.81  E-value=8.3e-19  Score=148.36  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=122.3

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  174 (274)
                      ...+.+.+..  .++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.++++....+.  +++++.+|+......++
T Consensus       109 ~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~  184 (286)
T 3m70_A          109 HGDVVDAAKI--ISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQEN  184 (286)
T ss_dssp             CHHHHHHHHH--SCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSC
T ss_pred             HHHHHHHhhc--cCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCC
Confidence            3445555553  3678999999999999999999999999999999999999999988765  79999999988555789


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC---CCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG---GPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ||+|+++.++++++++....+++++.++|+|||.+++..........   ...+.++.+++.+++..  |+++...+.
T Consensus       185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~  260 (286)
T 3m70_A          185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNEN  260 (286)
T ss_dssp             EEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred             ccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEcc
Confidence            99999999999998888889999999999999997775543332211   12455789999999975  999888654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.81  E-value=4e-20  Score=149.81  Aligned_cols=150  Identities=16%  Similarity=0.104  Sum_probs=119.0

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCee
Q 024008           99 VHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD  176 (274)
                      ..++.....++.+|||+|||+|..+..+++ .+.+++++|+++.+++.|+++....+..++++++.+|+.+ ..++++||
T Consensus        34 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  113 (219)
T 3dlc_A           34 ENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYAD  113 (219)
T ss_dssp             HHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEE
T ss_pred             HHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCccccc
Confidence            334444344445999999999999999988 5779999999999999999999888777789999999988 45668999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------C-C-------CCCcccCHHHHHHHHh
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------V-G-------GPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----------~-~-------~~~~~~~~~~~~~~~~  237 (274)
                      +|++..++++++  +...+++++.++|+|||.+++........           . .       .....++.+++.++++
T Consensus       114 ~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  191 (219)
T 3dlc_A          114 LIVSRGSVFFWE--DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLD  191 (219)
T ss_dssp             EEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHH
T ss_pred             EEEECchHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHH
Confidence            999999999984  45679999999999999999876332110           0 0       0011236799999999


Q ss_pred             cCCCcEEEEeecc
Q 024008          238 PMGFQAISIVDNK  250 (274)
Q Consensus       238 ~~Gf~~~~~~~~~  250 (274)
                      ++||+.+++....
T Consensus       192 ~aGf~~v~~~~~~  204 (219)
T 3dlc_A          192 EIGISSYEIILGD  204 (219)
T ss_dssp             HHTCSSEEEEEET
T ss_pred             HcCCCeEEEEecC
Confidence            9999998887543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.81  E-value=1.8e-19  Score=148.59  Aligned_cols=152  Identities=18%  Similarity=0.105  Sum_probs=120.6

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      ..+..++.....++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++....+.  +++++.+|+.+....++|
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~f  102 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKF  102 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCE
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCccCCc
Confidence            344555554334678999999999999999999889999999999999999999876653  699999999875444889


Q ss_pred             eEEEecc-cccccC-hhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------------------------
Q 024008          176 DLIFDYT-FFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------------------------  219 (274)
Q Consensus       176 D~v~~~~-~~~~~~-~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----------------------------------  219 (274)
                      |+|++.. +++|++ ++....+++++.++|+|||.+++...+....                                  
T Consensus       103 D~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (246)
T 1y8c_A          103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYIS  182 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred             eEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEE
Confidence            9999998 999984 4677899999999999999999855432100                                  


Q ss_pred             ----CCC---------CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          220 ----VGG---------PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       220 ----~~~---------~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                          ..+         ....++.+++.++++++||+++.+...
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~  225 (246)
T 1y8c_A          183 FFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC  225 (246)
T ss_dssp             EEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred             EEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence                000         012358999999999999999988754

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.81  E-value=6.8e-19  Score=146.38  Aligned_cols=153  Identities=14%  Similarity=0.053  Sum_probs=121.3

Q ss_pred             HHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCC
Q 024008           96 PIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP  171 (274)
Q Consensus        96 ~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  171 (274)
                      .....++...  ..++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++.++++....++.++++++.+|+.. ..+
T Consensus        32 ~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (257)
T 3f4k_A           32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ  111 (257)
T ss_dssp             HHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred             HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence            4444555544  2345799999999999999998854 49999999999999999999988887789999999987 445


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------CCCcccCHHHHHHHHhcCCC
Q 024008          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------GPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~Gf  241 (274)
                      +++||+|++..++++++   ...+++++.++|+|||++++.+........          ..+...+.+++.++++++||
T Consensus       112 ~~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  188 (257)
T 3f4k_A          112 NEELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGY  188 (257)
T ss_dssp             TTCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTE
T ss_pred             CCCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCC
Confidence            68999999999999984   457899999999999999998743211100          01123478999999999999


Q ss_pred             cEEEEeeccc
Q 024008          242 QAISIVDNKL  251 (274)
Q Consensus       242 ~~~~~~~~~~  251 (274)
                      +++.+.....
T Consensus       189 ~~v~~~~~~~  198 (257)
T 3f4k_A          189 TPTAHFILPE  198 (257)
T ss_dssp             EEEEEEECCG
T ss_pred             eEEEEEECCh
Confidence            9999776543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.81  E-value=2.5e-19  Score=147.71  Aligned_cols=135  Identities=18%  Similarity=0.145  Sum_probs=114.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.++++         ++++.+|+.+   ..++++||+|++..+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~~  110 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISHF  110 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence            3458999999999999999998888999999999999999865         6788888876   446789999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +++++++....+++++.++|+|||++++........        .......++.+++.++++++||+++.+....
T Consensus       111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE  185 (240)
T ss_dssp             GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence            999987778899999999999999999987654321        1122344689999999999999999888755

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.80  E-value=9e-19  Score=150.39  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=124.1

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      +..++.... .++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++....++.++++++.+|+.+..  ++|
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~f  156 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPV  156 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCC
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCc
Confidence            344455443 35579999999999999999885 88999999999999999999988877778999999997653  789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC------------------------CCCcccCHHH
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG------------------------GPPYKVSVSD  231 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~------------------------~~~~~~~~~~  231 (274)
                      |+|++..++++++++....+++++.++|+|||.+++..........                        ......+.++
T Consensus       157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  236 (318)
T 2fk8_A          157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM  236 (318)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHH
Confidence            9999999999997767789999999999999999998765543100                        0112348999


Q ss_pred             HHHHHhcCCCcEEEEeeccc
Q 024008          232 YEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      +.++++++||+++.+.....
T Consensus       237 ~~~~l~~aGf~~~~~~~~~~  256 (318)
T 2fk8_A          237 MVEHGEKAGFTVPEPLSLRP  256 (318)
T ss_dssp             HHHHHHHTTCBCCCCEECHH
T ss_pred             HHHHHHhCCCEEEEEEecch
Confidence            99999999999988777543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.80  E-value=1.8e-19  Score=146.79  Aligned_cols=135  Identities=19%  Similarity=0.232  Sum_probs=108.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++       .++.+..+|+...     .+..+||+|++.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  123 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICAN  123 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEEC
Confidence            4568999999999999999999999999999999999999987       2467888877653     334569999999


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC---------------------CCcccCHHHHHHHHhcCC
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG---------------------PPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~G  240 (274)
                      .+++ .  .+...+++++.++|+|||++++...+.......                     ..+..+.+++.++++++|
T Consensus       124 ~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  200 (227)
T 3e8s_A          124 FALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG  200 (227)
T ss_dssp             SCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred             chhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence            9998 4  344678999999999999999988755332111                     012348999999999999


Q ss_pred             CcEEEEeeccc
Q 024008          241 FQAISIVDNKL  251 (274)
Q Consensus       241 f~~~~~~~~~~  251 (274)
                      |+++.+.+...
T Consensus       201 f~~~~~~~~~~  211 (227)
T 3e8s_A          201 LRLVSLQEPQH  211 (227)
T ss_dssp             EEEEEEECCCC
T ss_pred             CeEEEEecCCC
Confidence            99999887443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.80  E-value=7.2e-19  Score=145.33  Aligned_cols=141  Identities=19%  Similarity=0.151  Sum_probs=114.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC------CCeeEEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT------ELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~fD~v~  179 (274)
                      ..++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.++++...    .+++++++|+.+....      ..||+|+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~v~  129 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDANIY  129 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccEEE
Confidence            34567999999999999999999777999999999999999998832    3699999999873211      2489999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------------CCCCCcccCHHHHHHHHh
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------------VGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~  237 (274)
                      +..++++++++....+++++.++|+|||++++.++.....                      ....+..++.+++.+++ 
T Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  208 (245)
T 3ggd_A          130 MRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF-  208 (245)
T ss_dssp             EESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC-
T ss_pred             EcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh-
Confidence            9999999987788899999999999999999888654321                      01112346899999999 


Q ss_pred             cCCCcEEEEeecccc
Q 024008          238 PMGFQAISIVDNKLA  252 (274)
Q Consensus       238 ~~Gf~~~~~~~~~~~  252 (274)
                       +||+++........
T Consensus       209 -aGf~~~~~~~~~~~  222 (245)
T 3ggd_A          209 -PDFEILSQGEGLFQ  222 (245)
T ss_dssp             -TTEEEEEEECCBCC
T ss_pred             -CCCEEEeccccccc
Confidence             89999987775543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.79  E-value=1.7e-18  Score=151.43  Aligned_cols=140  Identities=14%  Similarity=0.122  Sum_probs=118.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~  183 (274)
                      ...+|||||||+|..+..+++  ++.+++++|+ +.+++.|+++....++.++++++.+|+++..  .+++||+|++..+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~v  257 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF  257 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEech
Confidence            457999999999999999988  7889999999 9999999999988877778999999999852  2378999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------------CCCCcccCHHHHHHHHhcCCCcEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------------GGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      +++++++....++++++++|+|||++++.+.......                   .+.....+.+++.++++++||+++
T Consensus       258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v  337 (363)
T 3dp7_A          258 LDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVE  337 (363)
T ss_dssp             STTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEES
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEE
Confidence            9999988888999999999999999999886443321                   111223589999999999999988


Q ss_pred             EEee
Q 024008          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      .+..
T Consensus       338 ~~~~  341 (363)
T 3dp7_A          338 EIQD  341 (363)
T ss_dssp             CCCC
T ss_pred             EEEe
Confidence            7764

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.79  E-value=7e-19  Score=141.72  Aligned_cols=142  Identities=20%  Similarity=0.180  Sum_probs=115.0

Q ss_pred             CCCCeEEEEcCCcchh-HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~-~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|.. ...++..+.+++|+|+++.+++.++++....+  .+++++.+|+.+ ..++++||+|++..++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcChH
Confidence            4568999999999998 44556688899999999999999999876544  468999999987 3456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------CCC---cccCHHHHHHHHhcCCCcEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------GPP---YKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      +|++.+....+++++.++|+|||.+++..+...+...                +.+   ..++.+++.+++...||....
T Consensus       100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~  179 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE  179 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence            9998778889999999999999999998876543211                111   346899999999999988776


Q ss_pred             Eeecc
Q 024008          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      .....
T Consensus       180 ~~~~~  184 (209)
T 2p8j_A          180 DRVVE  184 (209)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            65444

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.79  E-value=2.8e-18  Score=148.28  Aligned_cols=143  Identities=17%  Similarity=0.180  Sum_probs=119.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++++|++ .+++.|+++....++.++++++.+|+.+...++.||+|++.+++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            4557999999999999999987  47899999999 99999999987776667899999999874434459999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC----------------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG----------------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ++++++....+++++.++|+|||++++.+.........                ....++.+++.++++++||+.+++..
T Consensus       243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~  322 (335)
T 2r3s_A          243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS  322 (335)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEE
Confidence            99988888899999999999999999988765432111                12335899999999999999998876


Q ss_pred             cc
Q 024008          249 NK  250 (274)
Q Consensus       249 ~~  250 (274)
                      ..
T Consensus       323 ~~  324 (335)
T 2r3s_A          323 LP  324 (335)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.79  E-value=3.7e-18  Score=147.47  Aligned_cols=140  Identities=12%  Similarity=0.054  Sum_probs=118.0

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      ..+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....++.++++|+.+|++...+. +||+|++.+++++
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~-~~D~v~~~~vlh~  247 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA-GAGGYVLSAVLHD  247 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC-SCSEEEEESCGGG
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCC-CCcEEEEehhhcc
Confidence            47999999999999999987  6779999999 999999999998887778899999999865544 8999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-----------CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-----------PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ++++....++++++++|+|||++++.+.........           .....+.+++.++++++||+++++....
T Consensus       248 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~  322 (332)
T 3i53_A          248 WDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPIS  322 (332)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECS
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence            998878899999999999999999988654432000           0123589999999999999999887643

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.79  E-value=7.3e-19  Score=146.71  Aligned_cols=177  Identities=14%  Similarity=0.102  Sum_probs=127.6

Q ss_pred             ccchhHhhhcCCCCccCCC----ccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHH
Q 024008           75 SGGWEKCWEEGLTPWDIGQ----PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEEL  149 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~  149 (274)
                      ..+|+.+|......+....    +...+..++.....++.+|||+|||+|..+..++..+. +|+|+|+++.+++.++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~   98 (265)
T 2i62_A           19 RDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKW   98 (265)
T ss_dssp             HHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHH
Confidence            3578888865443321100    11122344443234567999999999999999988877 999999999999999998


Q ss_pred             hhcCCC----------------------------Ccce-EEEEcccCCCC--CC---CCeeEEEecccccccCh--hHHH
Q 024008          150 SSSLPN----------------------------AKFV-SFLKADFFTWC--PT---ELFDLIFDYTFFCAIEP--EMRA  193 (274)
Q Consensus       150 ~~~~~~----------------------------~~~v-~~~~~d~~~~~--~~---~~fD~v~~~~~~~~~~~--~~~~  193 (274)
                      ....+.                            ..++ +++.+|+.+..  ++   ++||+|++..+++++++  +...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~  178 (265)
T 2i62_A           99 LKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYR  178 (265)
T ss_dssp             HTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred             HhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHH
Confidence            865421                            0127 89999998733  34   78999999999996543  4678


Q ss_pred             HHHHHHHhcccCCcEEEEEEccCCCC--CCC---CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          194 AWAQKIKDFLKPDGELITLMFPISDH--VGG---PPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       194 ~~l~~l~~~L~~gG~l~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      .++.++.++|+|||.+++........  ...   ....++.+++.++++++||+++.+.....
T Consensus       179 ~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~  241 (265)
T 2i62_A          179 TALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ  241 (265)
T ss_dssp             HHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECC
T ss_pred             HHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEecc
Confidence            89999999999999999877432211  000   12345888999999999999999887654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.78  E-value=1.7e-18  Score=137.49  Aligned_cols=131  Identities=19%  Similarity=0.197  Sum_probs=112.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec-cc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY-TF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~-~~  183 (274)
                      ..++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++.      .+++++.+|+.. ..+.++||+|++. .+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~~  117 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGNV  117 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCCC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCcH
Confidence            346789999999999999999988899999999999999999987      358999999987 3456789999998 78


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +++++.+....++..+.++|+|||.+++......        .++.+++.++++++||.++......
T Consensus       118 ~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~--------~~~~~~~~~~l~~~Gf~~~~~~~~~  176 (195)
T 3cgg_A          118 MGFLAEDGREPALANIHRALGADGRAVIGFGAGR--------GWVFGDFLEVAERVGLELENAFESW  176 (195)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS--------SCCHHHHHHHHHHHTEEEEEEESST
T ss_pred             HhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC--------CcCHHHHHHHHHHcCCEEeeeeccc
Confidence            8888877788999999999999999998764332        2478999999999999998886643

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.78  E-value=1.2e-18  Score=135.95  Aligned_cols=132  Identities=22%  Similarity=0.299  Sum_probs=111.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++.      +++++..+|  ...++++||+|++..++++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~v~~~~~d--~~~~~~~~D~v~~~~~l~~   87 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKF------DSVITLSDP--KEIPDNSVDFILFANSFHD   87 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHC------TTSEEESSG--GGSCTTCEEEEEEESCSTT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhC------CCcEEEeCC--CCCCCCceEEEEEccchhc
Confidence            45679999999999999999997779999999999999999982      579999999  4455678999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc--ccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY--KVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ++  +...+++++.++|+|||.+++..+.......+++.  .++.+++.++++  ||+++.+....
T Consensus        88 ~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~  149 (170)
T 3i9f_A           88 MD--DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPT  149 (170)
T ss_dssp             CS--CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSS
T ss_pred             cc--CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCC
Confidence            85  44688999999999999999998876654444332  368999999999  99999887754

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.78  E-value=2.7e-18  Score=145.71  Aligned_cols=147  Identities=18%  Similarity=0.185  Sum_probs=118.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C-CCCCeeEEEecc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~fD~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..+++.+. +++|+|+++.+++.|+++....+...+++++.+|+... . ++++||+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            35668999999999999998887555 99999999999999999998877666899999999873 3 467899999999


Q ss_pred             cccc--cChhHHHHHHHHHHhcccCCcEEEEEEccCCC-------------------------CC-CCC-----------
Q 024008          183 FFCA--IEPEMRAAWAQKIKDFLKPDGELITLMFPISD-------------------------HV-GGP-----------  223 (274)
Q Consensus       183 ~~~~--~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~-------------------------~~-~~~-----------  223 (274)
                      ++++  .+.+....++.++.++|+|||.+++.......                         .. .+.           
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  221 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN  221 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence            9987  45567789999999999999999987644210                         00 000           


Q ss_pred             ---CcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          224 ---PYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       224 ---~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                         ...++.+++.++++++||+++.+......
T Consensus       222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~  253 (298)
T 1ri5_A          222 NCIEYFVDFTRMVDGFKRLGLSLVERKGFIDF  253 (298)
T ss_dssp             SEEEECCCHHHHHHHHHTTTEEEEEEEEHHHH
T ss_pred             CCcccccCHHHHHHHHHHcCCEEEEecCHHHH
Confidence               12357899999999999999998775543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.78  E-value=7.5e-18  Score=147.62  Aligned_cols=139  Identities=20%  Similarity=0.196  Sum_probs=118.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....++.++++|+.+|++...+. .||+|++.++++
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~-~~D~v~~~~vlh  279 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD-GADVYLIKHVLH  279 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS-SCSEEEEESCGG
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC-CceEEEhhhhhc
Confidence            457999999999999999987  5779999999 999999999998887778899999999865554 899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-------------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-------------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +++++....+++++.++|+|||++++.+.........             .....+.+++.++++++||+++++..
T Consensus       280 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  355 (369)
T 3gwz_A          280 DWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP  355 (369)
T ss_dssp             GSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence            9988877789999999999999999988655432110             01225899999999999999999876

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.78  E-value=3.4e-18  Score=144.55  Aligned_cols=146  Identities=19%  Similarity=0.184  Sum_probs=115.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.|+++....+  .+++++.+|+.+...+++||+|++..+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~fD~v~~~~~   98 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIELNDKYDIAICHAF   98 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEcchhhcCcCCCeeEEEECCh
Confidence            35689999999999999999884   5899999999999999999987765  379999999998555679999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEcc-----CCCC------------------------CCCCCcccCHHHHHH
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP-----ISDH------------------------VGGPPYKVSVSDYEE  234 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~-----~~~~------------------------~~~~~~~~~~~~~~~  234 (274)
                      ++++++  ...+++++.++|+|||++++.+..     ....                        ..+ .......++.+
T Consensus        99 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~  175 (284)
T 3gu3_A           99 LLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG-KDGNIGMKIPI  175 (284)
T ss_dssp             GGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTC-CCTTGGGTHHH
T ss_pred             hhcCCC--HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhc-ccccHHHHHHH
Confidence            999853  368999999999999999988765     1100                        001 11235678999


Q ss_pred             HHhcCCCcEEEE----eecccccCCcc
Q 024008          235 VLQPMGFQAISI----VDNKLAIGPRK  257 (274)
Q Consensus       235 ~~~~~Gf~~~~~----~~~~~~~~~~~  257 (274)
                      +++++||..+.+    .....+...++
T Consensus       176 ~l~~aGF~~v~~~~~~~~~~~~~~~~~  202 (284)
T 3gu3_A          176 YLSELGVKNIECRVSDKVNFLDSNMHH  202 (284)
T ss_dssp             HHHHTTCEEEEEEECCCCEEECTTCCS
T ss_pred             HHHHcCCCeEEEEEcCCccccCCCCCh
Confidence            999999999988    44444444444

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.78  E-value=2.2e-18  Score=144.88  Aligned_cols=158  Identities=23%  Similarity=0.316  Sum_probs=122.5

Q ss_pred             cHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-C
Q 024008           95 APIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-W  169 (274)
Q Consensus        95 ~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~  169 (274)
                      ...+..++...  ..++.+|||+|||+|..+..+++  ++.+++++|+++.+++.++++....+. .+++++.+|+.. .
T Consensus        22 ~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~  100 (276)
T 3mgg_A           22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLP  100 (276)
T ss_dssp             -CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCC
T ss_pred             HHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCC
Confidence            34455555433  24568999999999999999988  478999999999999999999887765 369999999987 4


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---C-----------------CCCcccCH
Q 024008          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---G-----------------GPPYKVSV  229 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~---~-----------------~~~~~~~~  229 (274)
                      .++++||+|++..+++++++.  ..++.++.++|+|||.+++.+.......   .                 ......+.
T Consensus       101 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (276)
T 3mgg_A          101 FEDSSFDHIFVCFVLEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVG  178 (276)
T ss_dssp             SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGG
T ss_pred             CCCCCeeEEEEechhhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchH
Confidence            456899999999999999643  5789999999999999999764321110   0                 00112356


Q ss_pred             HHHHHHHhcCCCcEEEEeecccccCC
Q 024008          230 SDYEEVLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       230 ~~~~~~~~~~Gf~~~~~~~~~~~~~~  255 (274)
                      .++.++++++||+++.+.........
T Consensus       179 ~~l~~~l~~aGf~~v~~~~~~~~~~~  204 (276)
T 3mgg_A          179 RQIYPLLQESGFEKIRVEPRMVYIDS  204 (276)
T ss_dssp             GGHHHHHHHTTCEEEEEEEEEEEECT
T ss_pred             HHHHHHHHHCCCCeEEEeeEEEECCC
Confidence            89999999999999999987655543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.78  E-value=4.4e-18  Score=148.12  Aligned_cols=146  Identities=10%  Similarity=0.066  Sum_probs=120.9

Q ss_pred             HHHhcCC-CC-CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCC
Q 024008          100 HLHQSGA-LP-KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTE  173 (274)
Q Consensus       100 ~~~~~~~-~~-~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~  173 (274)
                      .++.... .+ +.+|||+|||+|..+..+++  ++.+++++|+ +.+++.++++....+..++++++.+|+.+..  +++
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  247 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG  247 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence            4444432 23 57999999999999999987  5789999999 8899999999888777778999999999854  567


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC----------------CCcccCHHHHHHHHh
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG----------------PPYKVSVSDYEEVLQ  237 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~  237 (274)
                      .||+|++..++++++++....+++++.++|+|||++++.+.........                .....+.+++.++++
T Consensus       248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~  327 (352)
T 3mcz_A          248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVR  327 (352)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHH
T ss_pred             CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHH
Confidence            7999999999999988888899999999999999999988654432111                122358999999999


Q ss_pred             cCCCcEEEE
Q 024008          238 PMGFQAISI  246 (274)
Q Consensus       238 ~~Gf~~~~~  246 (274)
                      ++||++++.
T Consensus       328 ~aGf~~~~~  336 (352)
T 3mcz_A          328 DAGLAVGER  336 (352)
T ss_dssp             HTTCEEEEE
T ss_pred             HCCCceeee
Confidence            999999884

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=5.3e-18  Score=141.08  Aligned_cols=162  Identities=20%  Similarity=0.222  Sum_probs=120.2

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024008           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  173 (274)
                      ....++.... .++.+|||+|||+|..+..+++.  +.+++++|+++.+++.++++.      .+++++.+|+....+++
T Consensus        21 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~   94 (259)
T 2p35_A           21 PARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWKPAQ   94 (259)
T ss_dssp             HHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCCCSS
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcCccC
Confidence            3445665543 35579999999999999999884  889999999999999999883      46899999998855678


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------C----CCCCcccCHHH
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------V----GGPPYKVSVSD  231 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------------~----~~~~~~~~~~~  231 (274)
                      +||+|+++.++++++  +...++.++.++|+|||.+++........                  .    .......+.++
T Consensus        95 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T 2p35_A           95 KADLLYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSD  172 (259)
T ss_dssp             CEEEEEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHH
T ss_pred             CcCEEEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHH
Confidence            999999999999985  45688999999999999999987543211                  0    01223468999


Q ss_pred             HHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhh
Q 024008          232 YEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS  268 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (274)
                      +.++++++||.+..... .... +..+.+.+..|.+.
T Consensus       173 ~~~~l~~aGf~v~~~~~-~~~~-~~~~~~~~~~~l~~  207 (259)
T 2p35_A          173 YFNALSPKSSRVDVWHT-VYNH-PMKDADSIVEWVKG  207 (259)
T ss_dssp             HHHHHGGGEEEEEEEEE-EEEE-EESCHHHHHHHHTT
T ss_pred             HHHHHHhcCCceEEEEE-Eeee-ccCCchHHhhhhhc
Confidence            99999999997443332 2111 22344555555553

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.77  E-value=2.4e-18  Score=141.78  Aligned_cols=137  Identities=20%  Similarity=0.244  Sum_probs=111.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++.+. +++++|+++.+++.++++...    .+++++.+|+... .+.++||+|++..++
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  117 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDLAYSSLAL  117 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceEEEEeccc
Confidence            4568999999999999999998888 999999999999999988754    3699999999873 456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---C-------------------------------CCCCcccCHH
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---V-------------------------------GGPPYKVSVS  230 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---~-------------------------------~~~~~~~~~~  230 (274)
                      ++++  +...+++++.++|+|||.+++....+...   .                               ....++.+.+
T Consensus       118 ~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  195 (243)
T 3bkw_A          118 HYVE--DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVG  195 (243)
T ss_dssp             GGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHH
T ss_pred             cccc--hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHH
Confidence            9985  45688999999999999999876432100   0                               0011224899


Q ss_pred             HHHHHHhcCCCcEEEEeec
Q 024008          231 DYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       231 ~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++.++++++||+++.+.+.
T Consensus       196 ~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          196 TTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             HHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHcCCEeeeeccC
Confidence            9999999999999998874

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.77  E-value=4.7e-18  Score=134.40  Aligned_cols=153  Identities=16%  Similarity=0.107  Sum_probs=108.9

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~  172 (274)
                      ......++.....++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|+++....++ ++++++..|....  .++
T Consensus         9 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~   87 (185)
T 3mti_A            9 IHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVR   87 (185)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhcc
Confidence            4445556665556678999999999999999999988999999999999999999987766 6799999777662  346


Q ss_pred             CCeeEEEeccccccc-------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          173 ELFDLIFDYTFFCAI-------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~-------~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ++||+|+++..+...       ..+....+++++.++|+|||++++..+.....  +........++.+.+...+|.+..
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~  165 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDG--GDMEKDAVLEYVIGLDQRVFTAML  165 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--------CHHHHHHHHHHHHSCTTTEEEEE
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCC--CHHHHHHHHHHHHhCCCceEEEEE
Confidence            789999987322211       22455678899999999999999988754321  111111233444455566788877


Q ss_pred             Eeecc
Q 024008          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      .....
T Consensus       166 ~~~~~  170 (185)
T 3mti_A          166 YQPLN  170 (185)
T ss_dssp             EEESS
T ss_pred             ehhhc
Confidence            76644

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.77  E-value=1.5e-18  Score=144.86  Aligned_cols=140  Identities=16%  Similarity=0.090  Sum_probs=113.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++++.+|+|+|+++.+++.++++.       +++|+.+|+.+ ..++++||+|++..+++
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPDKSVDGVISILAIH  105 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCTTCBSEEEEESCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCCCCEeEEEEcchHh
Confidence            45689999999999999999999999999999999988776553       69999999988 44568999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC-------------CcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP-------------PYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      +++  +...+++++.++|+ ||++++.++.........             ....+.+++. +++++||..+.+.....+
T Consensus       106 ~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~~~p  181 (261)
T 3ege_A          106 HFS--HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIPFLLP  181 (261)
T ss_dssp             GCS--SHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEECCEE
T ss_pred             hcc--CHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEecCC
Confidence            984  45789999999999 998888877643221100             1223567788 999999999999988777


Q ss_pred             cCCcc
Q 024008          253 IGPRK  257 (274)
Q Consensus       253 ~~~~~  257 (274)
                      ...++
T Consensus       182 ~~~~~  186 (261)
T 3ege_A          182 HDLSD  186 (261)
T ss_dssp             TTCSB
T ss_pred             CcCcc
Confidence            76654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.77  E-value=4.9e-18  Score=143.86  Aligned_cols=154  Identities=14%  Similarity=0.142  Sum_probs=110.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCC-----------------C---
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPN-----------------A---  156 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~-----------------~---  156 (274)
                      +.+.+.....++.+|||+|||+|.....++. .+.+|+|+|+|+.+++.|++++.....                 .   
T Consensus        61 l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  140 (289)
T 2g72_A           61 LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECW  140 (289)
T ss_dssp             HHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCH
T ss_pred             HHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccch
Confidence            3344433234668999999999996554444 467999999999999999986643210                 0   


Q ss_pred             ---------cceEEEEcccCC-C------CCCCCeeEEEecccccccCh--hHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 024008          157 ---------KFVSFLKADFFT-W------CPTELFDLIFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELITLMFPISD  218 (274)
Q Consensus       157 ---------~~v~~~~~d~~~-~------~~~~~fD~v~~~~~~~~~~~--~~~~~~l~~l~~~L~~gG~l~~~~~~~~~  218 (274)
                               ..++++.+|+.. .      .++++||+|+++.+++++.+  ++...++.++.++|+|||++++.......
T Consensus       141 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~  220 (289)
T 2g72_A          141 QDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES  220 (289)
T ss_dssp             HHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC
T ss_pred             hhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc
Confidence                     015677788876 2      22456999999999998653  37789999999999999999986432211


Q ss_pred             C--CCC---CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          219 H--VGG---PPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       219 ~--~~~---~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      .  ...   ....++.+++.++++++||+++.+.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~  258 (289)
T 2g72_A          221 WYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIM  258 (289)
T ss_dssp             EEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             eEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeec
Confidence            0  001   12346899999999999999999887663

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.77  E-value=8.4e-18  Score=140.08  Aligned_cols=141  Identities=15%  Similarity=0.149  Sum_probs=112.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++...  ...+++++.+|+... .++++||+|++..+++
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAG--VDRKVQVVQADARAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTT--SCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc--cCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence            4567999999999999999999889999999999999999999722  235799999999874 4567899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCC-CC--------------CC-----CCcccCHHHHHHHHhcCCCcEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD-HV--------------GG-----PPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~-~~--------------~~-----~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      +++  +...++.++.++|+|||.+++. ++... ..              .+     .....+.+++.++++++||.++.
T Consensus       116 ~~~--~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  192 (263)
T 2yqz_A          116 LVP--DWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRT  192 (263)
T ss_dssp             GCT--THHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             hcC--CHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcce
Confidence            985  3467899999999999999887 33221 00              01     11235788999999999999887


Q ss_pred             Eeecccc
Q 024008          246 IVDNKLA  252 (274)
Q Consensus       246 ~~~~~~~  252 (274)
                      +......
T Consensus       193 ~~~~~~~  199 (263)
T 2yqz_A          193 REVARWR  199 (263)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeee
Confidence            6554433

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.76  E-value=8.8e-18  Score=138.00  Aligned_cols=145  Identities=17%  Similarity=0.225  Sum_probs=113.1

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  177 (274)
                      +.+++.....++.+|||+|||+|..+..+++.+.+++|+|+++.+++.|+++.      .+++++.+|+.+....++||+
T Consensus        30 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~D~  103 (239)
T 3bxo_A           30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRKFSA  103 (239)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSCEEE
T ss_pred             HHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCCCcE
Confidence            34444433355689999999999999999987779999999999999999886      358999999988555678999


Q ss_pred             EEe-cccccccC-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------------------------------
Q 024008          178 IFD-YTFFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------------------------------  220 (274)
Q Consensus       178 v~~-~~~~~~~~-~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----------------------------------  220 (274)
                      |++ ..++++++ ++....+++++.++|+|||.+++..+......                                   
T Consensus       104 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (239)
T 3bxo_A          104 VVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVH  183 (239)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEE
Confidence            995 45888884 36778999999999999999998764432211                                   


Q ss_pred             ------CC---------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          221 ------GG---------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       221 ------~~---------~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                            .+         ....++.+++.++++++||+++.+..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~  226 (239)
T 3bxo_A          184 FTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEG  226 (239)
T ss_dssp             EEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESS
T ss_pred             EEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEc
Confidence                  00         00235889999999999998776644

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.76  E-value=2.5e-18  Score=145.95  Aligned_cols=143  Identities=19%  Similarity=0.259  Sum_probs=108.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCC----------------------------
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA----------------------------  156 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~----------------------------  156 (274)
                      .++.+|||||||+|..+..+++  .+.+|+|+|+++.+++.|++++...+..                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            3568999999999999999988  3679999999999999999987654321                            


Q ss_pred             -----------------------------cceEEEEcccCCCC------CCCCeeEEEeccccccc----ChhHHHHHHH
Q 024008          157 -----------------------------KFVSFLKADFFTWC------PTELFDLIFDYTFFCAI----EPEMRAAWAQ  197 (274)
Q Consensus       157 -----------------------------~~v~~~~~d~~~~~------~~~~fD~v~~~~~~~~~----~~~~~~~~l~  197 (274)
                                                   .+++|+.+|+....      ..++||+|++..+++++    +++....+++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                         57999999998633      56899999999999776    4457789999


Q ss_pred             HHHhcccCCcEEEEEEccCCC--CCCCC---------CcccCHHHHHHHHhc--CCCcEEEEeec
Q 024008          198 KIKDFLKPDGELITLMFPISD--HVGGP---------PYKVSVSDYEEVLQP--MGFQAISIVDN  249 (274)
Q Consensus       198 ~l~~~L~~gG~l~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~--~Gf~~~~~~~~  249 (274)
                      +++++|+|||++++....-..  .....         ...+.++++.+++.+  +||..+++...
T Consensus       205 ~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred             HHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence            999999999999986432110  00000         112468899999999  99988777653

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.76  E-value=1e-17  Score=136.54  Aligned_cols=142  Identities=24%  Similarity=0.281  Sum_probs=111.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.|+++....+  .+++++.+|+.+. .+.++||+|+++.+++
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            346899999999999999999888899999999999999999987665  5799999999883 4567899999999966


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------CCCCCc-----------------------------ccC
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------VGGPPY-----------------------------KVS  228 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------~~~~~~-----------------------------~~~  228 (274)
                      +.+......++.++.++|+|||.+++........        ..+..+                             ..-
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  194 (227)
T 1ve3_A          115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVW  194 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECC
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhh
Confidence            6665677889999999999999999876541100        000000                             001


Q ss_pred             HHHHHHHHhcCCCcEEEEeecc
Q 024008          229 VSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       229 ~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ..++.++++++||..+.+....
T Consensus       195 ~~~~~~~l~~~GF~~v~~~~~~  216 (227)
T 1ve3_A          195 GKTGVELLAKLYFTKEAEEKVG  216 (227)
T ss_dssp             CHHHHHHHHTTTEEEEEEEEET
T ss_pred             chHHHHHHHHHhhhHHHHHHhC
Confidence            1478899999999999888743

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.76  E-value=8e-18  Score=145.45  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=119.7

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008           99 VHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      ..++.....++.+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....++.++++++.+|+.+..+ ++||
T Consensus       158 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D  235 (334)
T 2ip2_A          158 HEIPRLLDFRGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP-SNGD  235 (334)
T ss_dssp             HHHHHHSCCTTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC-SSCS
T ss_pred             HHHHHhCCCCCCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC-CCCC
Confidence            334443323338999999999999999987  5779999999 99999999988765555689999999988544 6799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--------------CCcccCHHHHHHHHhcCCCc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--------------PPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Gf~  242 (274)
                      +|++..++++++++....+++++.++|+|||++++.+.........              .....+.+++.++++++||+
T Consensus       236 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  315 (334)
T 2ip2_A          236 IYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFA  315 (334)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred             EEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCc
Confidence            9999999999988877899999999999999999988654322110              01234799999999999999


Q ss_pred             EEEEeec
Q 024008          243 AISIVDN  249 (274)
Q Consensus       243 ~~~~~~~  249 (274)
                      ++++...
T Consensus       316 ~~~~~~~  322 (334)
T 2ip2_A          316 VERIVDL  322 (334)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEC
Confidence            9888764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.76  E-value=1.1e-17  Score=137.85  Aligned_cols=140  Identities=19%  Similarity=0.217  Sum_probs=113.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc-ccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT-FFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~-~~~  185 (274)
                      .++.+|||+|||+|..+..+++. .+++++|+++.+++.|+++....+  .+++++.+|+.+....++||+|++.. +++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            44689999999999999999888 899999999999999999987654  46999999998754458899999986 888


Q ss_pred             cc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCC----------------------------C-------------CCC-
Q 024008          186 AI-EPEMRAAWAQKIKDFLKPDGELITLMFPISD----------------------------H-------------VGG-  222 (274)
Q Consensus       186 ~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~----------------------------~-------------~~~-  222 (274)
                      ++ +.+....+++++.++|+|||.+++.......                            .             ..+ 
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGR  188 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSC
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCc
Confidence            88 5567788999999999999999875432100                            0             000 


Q ss_pred             --------CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          223 --------PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       223 --------~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                              ....++.+++.++++++||+++.+...
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  223 (243)
T 3d2l_A          189 YDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGD  223 (243)
T ss_dssp             EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEET
T ss_pred             eEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecC
Confidence                    002368999999999999999988654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.76  E-value=3.2e-17  Score=143.08  Aligned_cols=150  Identities=18%  Similarity=0.182  Sum_probs=120.5

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      ..++.... .++.+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....+..++++++.+|+.+... ..+
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  257 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PEA  257 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-CCC
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-CCC
Confidence            34444443 3457999999999999999987  5779999999 99999999998887776789999999987532 234


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC---------------C--CCcccCHHHHHHHHhc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG---------------G--PPYKVSVSDYEEVLQP  238 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~---------------~--~~~~~~~~~~~~~~~~  238 (274)
                      |+|++..++++++++....+++++.++|+|||++++.++.......               +  .....+.+++.+++++
T Consensus       258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~  337 (359)
T 1x19_A          258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES  337 (359)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHH
T ss_pred             CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHH
Confidence            9999999999998877889999999999999999888755432200               0  0111689999999999


Q ss_pred             CCCcEEEEeecc
Q 024008          239 MGFQAISIVDNK  250 (274)
Q Consensus       239 ~Gf~~~~~~~~~  250 (274)
                      +||+++++....
T Consensus       338 aGf~~v~~~~~~  349 (359)
T 1x19_A          338 LGYKDVTMVRKY  349 (359)
T ss_dssp             HTCEEEEEEEET
T ss_pred             CCCceEEEEecC
Confidence            999998887643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=135.01  Aligned_cols=153  Identities=14%  Similarity=0.193  Sum_probs=117.1

Q ss_pred             cccchhHhhhcCCC--CccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHh
Q 024008           74 SSGGWEKCWEEGLT--PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELS  150 (274)
Q Consensus        74 ~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~  150 (274)
                      ...+|+..|.....  .+........+..++.....++.+|||+|||+|..+..+++.+. +++++|+++.+++.++++.
T Consensus         6 ~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~   85 (215)
T 2pxx_A            6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACY   85 (215)
T ss_dssp             CHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred             chhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhc
Confidence            34689999987652  12222234456666655456678999999999999999998776 8999999999999999998


Q ss_pred             hcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC-------------hhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          151 SSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE-------------PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       151 ~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~-------------~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      ...   ++++++.+|+.+ ..++++||+|++..+++++.             ......+++++.++|+|||.+++..+..
T Consensus        86 ~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A           86 AHV---PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             TTC---TTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccC---CCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            652   479999999987 44567899999998887764             3466889999999999999999988543


Q ss_pred             CCCCCCCCcccCHHHHHHHHhcCCC
Q 024008          217 SDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~Gf  241 (274)
                                  ......++...||
T Consensus       163 ------------~~~~~~~~~~~~~  175 (215)
T 2pxx_A          163 ------------PHFRTRHYAQAYY  175 (215)
T ss_dssp             ------------HHHHHHHHCCGGG
T ss_pred             ------------cHHHHHHHhcccc
Confidence                        2334456666665

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.76  E-value=1e-17  Score=135.63  Aligned_cols=128  Identities=17%  Similarity=0.185  Sum_probs=103.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++....   .+++++.+|+.+..+.++||+|+++.+++|
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            34579999999999999999998889999999999999999998765   379999999998767889999999999999


Q ss_pred             cCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024008          187 IEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       187 ~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                      +++ +....++.++.++|+|||.+++........... ......+.+..++..
T Consensus       127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  178 (216)
T 3ofk_A          127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRW-GHVAGAETVITILTE  178 (216)
T ss_dssp             SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHT-TCSCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhh-hhhhhHHHHHHHHHh
Confidence            974 566788999999999999999876433211000 012345666666654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.75  E-value=1.3e-17  Score=146.36  Aligned_cols=142  Identities=18%  Similarity=0.108  Sum_probs=116.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....++.++++++.+|+.+..+. .||+|++..++
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl  258 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TADVVLLSFVL  258 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC-CCCEEEEeccc
Confidence            3457999999999999999987  4679999999 999999999998877767899999999874443 49999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEc--cCCCCCCC--------------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF--PISDHVGG--------------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~--~~~~~~~~--------------~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ++++++....+++++.++|+|||++++.+.  ........              ....++.+++.++++++||+++.+..
T Consensus       259 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~  338 (374)
T 1qzz_A          259 LNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT  338 (374)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence            999877777899999999999999999887  32211000              01235899999999999999998877


Q ss_pred             cc
Q 024008          249 NK  250 (274)
Q Consensus       249 ~~  250 (274)
                      ..
T Consensus       339 ~~  340 (374)
T 1qzz_A          339 SG  340 (374)
T ss_dssp             EC
T ss_pred             CC
Confidence            53

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.75  E-value=3.7e-18  Score=141.99  Aligned_cols=108  Identities=16%  Similarity=0.205  Sum_probs=90.2

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeE
Q 024008           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDL  177 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~  177 (274)
                      .+++........+|||||||+|..+..|++.+.+|+|+|+|+.+++.|+++       ++++++++|+.+ ..++++||+
T Consensus        30 ~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~sfD~  102 (257)
T 4hg2_A           30 FRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPASVDV  102 (257)
T ss_dssp             HHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSSCEEE
T ss_pred             HHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCCcccE
Confidence            333333333457999999999999999999999999999999999877532       479999999988 567789999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      |++..++|+++.   ..++.++.++|||||.+++..++.
T Consensus       103 v~~~~~~h~~~~---~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A          103 AIAAQAMHWFDL---DRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             EEECSCCTTCCH---HHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEEeeehhHhhH---HHHHHHHHHHcCCCCEEEEEECCC
Confidence            999999998864   468899999999999999887654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.75  E-value=2.3e-17  Score=139.87  Aligned_cols=117  Identities=19%  Similarity=0.196  Sum_probs=95.7

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC---CcceEEEEcccCCC---
Q 024008           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN---AKFVSFLKADFFTW---  169 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~---  169 (274)
                      ..+..++.  ..++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.|+++....+.   ..++.+..+|+...   
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            33444443  23568999999999999999999999999999999999999987643322   14688999998873   


Q ss_pred             -CCCCCeeEEEec-ccccccCh-----hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          170 -CPTELFDLIFDY-TFFCAIEP-----EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       170 -~~~~~fD~v~~~-~~~~~~~~-----~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                       .+.++||+|++. .+++|+++     +....+++++.++|+|||++++...
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence             467899999998 89999876     6688999999999999999998653

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.75  E-value=1.3e-16  Score=138.95  Aligned_cols=147  Identities=17%  Similarity=0.169  Sum_probs=118.1

Q ss_pred             HHHhcCCCC-CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008          100 HLHQSGALP-KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus       100 ~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      .++.....+ ..+|||||||+|..+..+++  ++.+++..|. |.+++.|+++....+ .++|+++.+|+++.. ...+|
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~-~~~~D  246 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDP-LPEAD  246 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSC-CCCCS
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCC-CCCce
Confidence            344433333 36999999999999999988  7779999997 889999999886554 578999999998753 34589


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC---------------CcccCHHHHHHHHhcCCC
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP---------------PYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~Gf  241 (274)
                      +|++..++|+++++....++++++++|+|||++++.+.-..+....+               ....|.+++.++++++||
T Consensus       247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf  326 (353)
T 4a6d_A          247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGF  326 (353)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTC
T ss_pred             EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence            99999999999988888999999999999999999987654332222               112489999999999999


Q ss_pred             cEEEEeec
Q 024008          242 QAISIVDN  249 (274)
Q Consensus       242 ~~~~~~~~  249 (274)
                      +.+++...
T Consensus       327 ~~v~v~~~  334 (353)
T 4a6d_A          327 RDFQFKKT  334 (353)
T ss_dssp             EEEEEECC
T ss_pred             ceEEEEEc
Confidence            99988764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.75  E-value=2.2e-17  Score=132.80  Aligned_cols=128  Identities=12%  Similarity=0.025  Sum_probs=106.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+++.+++.|+++....+..++++++.+|+.+ ......||+|++...+
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            345679999999999999999988889999999999999999999888776689999999988 4444689999987643


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                         +   .. +++++.++|+|||++++.....          -+..++.+++++.||++..+....
T Consensus       133 ---~---~~-~l~~~~~~LkpgG~lv~~~~~~----------~~~~~~~~~l~~~g~~i~~i~~~~  181 (204)
T 3njr_A          133 ---S---QA-LYDRLWEWLAPGTRIVANAVTL----------ESETLLTQLHARHGGQLLRIDIAQ  181 (204)
T ss_dssp             ---C---HH-HHHHHHHHSCTTCEEEEEECSH----------HHHHHHHHHHHHHCSEEEEEEEEE
T ss_pred             ---c---HH-HHHHHHHhcCCCcEEEEEecCc----------ccHHHHHHHHHhCCCcEEEEEeec
Confidence               1   23 8899999999999999887433          257788899999999988876543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.75  E-value=1.5e-17  Score=139.63  Aligned_cols=142  Identities=13%  Similarity=0.082  Sum_probs=113.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC-C--CeEEEEeCChH------HHHHHHHHhhcCCCCcceEEEEcc-cCC---CCCC
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP-E--RYVVGLEISDI------AIKKAEELSSSLPNAKFVSFLKAD-FFT---WCPT  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~~iD~s~~------~~~~a~~~~~~~~~~~~v~~~~~d-~~~---~~~~  172 (274)
                      ..++.+|||||||+|..+..+++. +  .+|+|+|+++.      +++.|+++....++.++++++.+| +..   ..++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  120 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIAD  120 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCC
Confidence            345689999999999999999874 3  79999999997      999999999887776789999998 432   2356


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------------CCCCCcccC
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------------VGGPPYKVS  228 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------------------~~~~~~~~~  228 (274)
                      ++||+|++..+++++++.  ..+++.+..+++|||++++.++.....                        .......++
T Consensus       121 ~~fD~v~~~~~l~~~~~~--~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  198 (275)
T 3bkx_A          121 QHFDRVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLIT  198 (275)
T ss_dssp             CCCSEEEEESCGGGSSCH--HHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCC
T ss_pred             CCEEEEEEccchhhCCCH--HHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCC
Confidence            789999999999998654  346777777778899999987655322                        011123468


Q ss_pred             HHHHHHHHhcCCCcEEEEeec
Q 024008          229 VSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       229 ~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      .+++.++++++||+++.+...
T Consensus       199 ~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          199 PDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHHHHHHHHHHTCEEEECCCB
T ss_pred             HHHHHHHHHHCCCeeEEEEEe
Confidence            999999999999999988886

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.75  E-value=1.2e-17  Score=147.00  Aligned_cols=141  Identities=21%  Similarity=0.270  Sum_probs=112.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcC-----C-C-CcceEEEEcccCC-------C
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL-----P-N-AKFVSFLKADFFT-------W  169 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~-----~-~-~~~v~~~~~d~~~-------~  169 (274)
                      .++.+|||+|||+|..+..+++   ++.+|+|+|+++.+++.|++++...     + . ..+++|+.+|+.+       .
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            3567999999999999998887   5679999999999999999987532     1 1 2579999999987       3


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------------CCCCcccCHHHHHHHHh
Q 024008          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------------GGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~  237 (274)
                      .++++||+|+++.+++++++  ...++.++.++|+|||++++.+.......            ......++.+++.++++
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  239 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVA  239 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHH
T ss_pred             CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHH
Confidence            45679999999999999853  57899999999999999999775443210            01112357899999999


Q ss_pred             cCCCcEEEEeec
Q 024008          238 PMGFQAISIVDN  249 (274)
Q Consensus       238 ~~Gf~~~~~~~~  249 (274)
                      ++||..+.+...
T Consensus       240 ~aGF~~v~~~~~  251 (383)
T 4fsd_A          240 EAGFRDVRLVSV  251 (383)
T ss_dssp             HTTCCCEEEEEE
T ss_pred             HCCCceEEEEec
Confidence            999998876653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.74  E-value=2.2e-17  Score=128.97  Aligned_cols=125  Identities=15%  Similarity=0.126  Sum_probs=103.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..+++.+ +|+|+|+++.+++.          .++++++.+|+.+..++++||+|+++.+++.
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYVP   90 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCBT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCcc
Confidence            566799999999999999999988 99999999999987          1468999999988666689999999988875


Q ss_pred             cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          187 IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       187 ~~~~-------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      .++.       ....++.++.+.+ |||.+++.....          ...+++.++++++||+.+.+.......
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~----------~~~~~l~~~l~~~gf~~~~~~~~~~~~  153 (170)
T 3q87_B           91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA----------NRPKEVLARLEERGYGTRILKVRKILG  153 (170)
T ss_dssp             TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG----------GCHHHHHHHHHHTTCEEEEEEEEECSS
T ss_pred             CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC----------CCHHHHHHHHHHCCCcEEEEEeeccCC
Confidence            4322       2345778888888 999999877433          267899999999999998888765443

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.74  E-value=5.1e-17  Score=132.40  Aligned_cols=137  Identities=17%  Similarity=0.118  Sum_probs=111.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++.        .++..+|+..   ..++++||+|++..+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            45689999999999999999988889999999999999998765        3688899875   234578999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------CCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------VGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      ++++++.  ..++.++.++|+|||.+++........                   .......++.+++.++++++||+++
T Consensus       103 l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  180 (230)
T 3cc8_A          103 LEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSIS  180 (230)
T ss_dssp             GGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEE
T ss_pred             hhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEE
Confidence            9998643  588999999999999999876442210                   0011234689999999999999999


Q ss_pred             EEeeccccc
Q 024008          245 SIVDNKLAI  253 (274)
Q Consensus       245 ~~~~~~~~~  253 (274)
                      .+.......
T Consensus       181 ~~~~~~~~~  189 (230)
T 3cc8_A          181 KVDRVYVDH  189 (230)
T ss_dssp             EEEEEECCC
T ss_pred             EEEecccCh
Confidence            998866554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.74  E-value=1.2e-18  Score=143.42  Aligned_cols=156  Identities=19%  Similarity=0.146  Sum_probs=110.7

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCC
Q 024008           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCP  171 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~  171 (274)
                      +.+..+......++++|||||||+|..+..+++. +.++++||+++.+++.|+++....+  .+++++.+|+..   ..+
T Consensus        48 ~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~  125 (236)
T 3orh_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP  125 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhccccc
Confidence            3444444444567789999999999999999884 4689999999999999999988765  568899988765   456


Q ss_pred             CCCeeEEEeccc-----ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc----ccCHHHHHHHHhcCCCc
Q 024008          172 TELFDLIFDYTF-----FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY----KVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       172 ~~~fD~v~~~~~-----~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Gf~  242 (274)
                      +++||.|+...+     .+++  .+...+++++.++|||||++++.............+    ....+.+...|.++||+
T Consensus       126 ~~~FD~i~~D~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~  203 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFR  203 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCC
T ss_pred             ccCCceEEEeeeecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCe
Confidence            788999985432     2333  466789999999999999988754221111001111    12345666778889999


Q ss_pred             EEEEeecccccCC
Q 024008          243 AISIVDNKLAIGP  255 (274)
Q Consensus       243 ~~~~~~~~~~~~~  255 (274)
                      +..+........+
T Consensus       204 ~~~i~~~~~~l~p  216 (236)
T 3orh_A          204 RENIRTEVMALVP  216 (236)
T ss_dssp             GGGEEEEEEECCC
T ss_pred             EEEEEEEeeccCC
Confidence            8776665444444

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.74  E-value=1.1e-17  Score=134.42  Aligned_cols=127  Identities=19%  Similarity=0.167  Sum_probs=107.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+. +++++|+++.+++.|+++....+..+ ++++.+|+.+.. +++||+|+++.++
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~fD~i~~~~~~  135 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-DGKFDLIVANILA  135 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-CCCceEEEECCcH
Confidence            34668999999999999999988655 99999999999999999998877654 999999998744 4789999998776


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++     ...+++++.++|+|||++++..+...          +.+++.++++++||+++.+...
T Consensus       136 ~~-----~~~~l~~~~~~L~~gG~l~~~~~~~~----------~~~~~~~~~~~~Gf~~~~~~~~  185 (205)
T 3grz_A          136 EI-----LLDLIPQLDSHLNEDGQVIFSGIDYL----------QLPKIEQALAENSFQIDLKMRA  185 (205)
T ss_dssp             HH-----HHHHGGGSGGGEEEEEEEEEEEEEGG----------GHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HH-----HHHHHHHHHHhcCCCCEEEEEecCcc----------cHHHHHHHHHHcCCceEEeecc
Confidence            54     36788999999999999999764332          5788999999999999887663

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.74  E-value=2.6e-17  Score=143.70  Aligned_cols=142  Identities=15%  Similarity=0.114  Sum_probs=117.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....++.++++++.+|+.+..+. .||+|++..++
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl  259 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR-KADAIILSFVL  259 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS-CEEEEEEESCG
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCC-CccEEEEcccc
Confidence            3457999999999999999887  5679999999 999999999988877767899999999874443 49999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEcc-CCCCCCC--------------CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDHVGG--------------PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++++++....+++++.++|+|||++++.+.. ..+....              .....+.+++.++++++||+++.+...
T Consensus       260 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  339 (360)
T 1tw3_A          260 LNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQL  339 (360)
T ss_dssp             GGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeC
Confidence            9998777778999999999999999998865 3221100              012358999999999999999988765


Q ss_pred             c
Q 024008          250 K  250 (274)
Q Consensus       250 ~  250 (274)
                      .
T Consensus       340 ~  340 (360)
T 1tw3_A          340 P  340 (360)
T ss_dssp             E
T ss_pred             C
Confidence            3

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.74  E-value=5.7e-17  Score=134.36  Aligned_cols=116  Identities=22%  Similarity=0.317  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  174 (274)
                      ..+..++.... .++.+|||+|||+|..+..+++.+.+++|+|+++.+++.|+++....+.  +++++.+|+.+....++
T Consensus        28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  105 (252)
T 1wzn_A           28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNE  105 (252)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSC
T ss_pred             HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccCCC
Confidence            33455555443 3557999999999999999999899999999999999999999876653  69999999988655678


Q ss_pred             eeEEEec-ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          175 FDLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 fD~v~~~-~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ||+|++. ..+++++.+....+++++.++|+|||.+++..
T Consensus       106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            9999987 45666776778899999999999999988743

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.73  E-value=4.5e-17  Score=141.58  Aligned_cols=136  Identities=13%  Similarity=0.125  Sum_probs=108.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      ++.+|||||||+|..+..+++  ++.+++++|+ +.++.  +.+....+..++++++.+|++...|  +||+|++..+++
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p--~~D~v~~~~vlh  258 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP--HADVHVLKRILH  258 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC--CCcEEEEehhcc
Confidence            347999999999999999988  6678999999 55554  3333334455689999999986554  899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--------------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--------------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +++++....++++++++|+|||++++.+.........              .....+.+++.++++++||+++++..
T Consensus       259 ~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          259 NWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             GSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence            9988877899999999999999999988654332111              11135899999999999999999876

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.73  E-value=5.2e-17  Score=138.19  Aligned_cols=142  Identities=19%  Similarity=0.171  Sum_probs=109.0

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhh---CCCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcccCC-CCCC
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFT-WCPT  172 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~---~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~~  172 (274)
                      ...+......++.+|||+|||+|..+..++   ..+.+|+|+|+++.+++.|+++.... +...+++|+++|+.+ ..+.
T Consensus        26 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~  105 (299)
T 3g5t_A           26 YKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG  105 (299)
T ss_dssp             HHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC
T ss_pred             HHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc
Confidence            333434334567899999999999999999   67889999999999999999998765 334689999999988 3334


Q ss_pred             ------CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------------C--CCCCcc--c
Q 024008          173 ------ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------------V--GGPPYK--V  227 (274)
Q Consensus       173 ------~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---------------~--~~~~~~--~  227 (274)
                            ++||+|++..+++++   +...++.++.++|+|||.+++..+.....               .  ...++.  .
T Consensus       106 ~~~~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p  182 (299)
T 3g5t_A          106 ADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQP  182 (299)
T ss_dssp             TTTTTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTT
T ss_pred             cccccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhch
Confidence                  689999999999998   44688999999999999998855432110               0  011122  3


Q ss_pred             CHHHHHHHHhcCCCc
Q 024008          228 SVSDYEEVLQPMGFQ  242 (274)
Q Consensus       228 ~~~~~~~~~~~~Gf~  242 (274)
                      ..+.+.+++++.||.
T Consensus       183 ~~~~~~~~l~~~gfp  197 (299)
T 3g5t_A          183 GRSRLRNMLKDSHLD  197 (299)
T ss_dssp             HHHHHHTTTTTCCCC
T ss_pred             hhHHHHHhhhccCCC
Confidence            456678999999994

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.73  E-value=7.6e-17  Score=131.83  Aligned_cols=136  Identities=16%  Similarity=0.084  Sum_probs=107.4

Q ss_pred             HhcCCCCCCeEEEEcCC-cchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeE
Q 024008          102 HQSGALPKGRALVPGCG-TGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDL  177 (274)
Q Consensus       102 ~~~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~  177 (274)
                      +.....++.+|||+||| +|..+..+++. +.+|+|+|+++.+++.|+++....+.  +++++.+|+..  ..++++||+
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~  126 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDV  126 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEE
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeE
Confidence            34444567899999999 99999999886 88999999999999999999988875  79999999643  344589999


Q ss_pred             EEecccccccCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008          178 IFDYTFFCAIEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       178 v~~~~~~~~~~~-----------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  240 (274)
                      |+++.++...+.                 .....+++.+.++|+|||++++.....         ....+++.++++++|
T Consensus       127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~~l~~~g  197 (230)
T 3evz_A          127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK---------EKLLNVIKERGIKLG  197 (230)
T ss_dssp             EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC---------HHHHHHHHHHHHHTT
T ss_pred             EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc---------HhHHHHHHHHHHHcC
Confidence            999987765432                 123678999999999999999865221         124678999999999


Q ss_pred             CcEEEEee
Q 024008          241 FQAISIVD  248 (274)
Q Consensus       241 f~~~~~~~  248 (274)
                      |.+..+..
T Consensus       198 ~~~~~~~~  205 (230)
T 3evz_A          198 YSVKDIKF  205 (230)
T ss_dssp             CEEEEEEE
T ss_pred             CceEEEEe
Confidence            98776644

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.73  E-value=2.6e-17  Score=140.15  Aligned_cols=143  Identities=15%  Similarity=0.157  Sum_probs=106.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCc-----ceEEEEcccCC---------CCCC
Q 024008          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFT---------WCPT  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~---------~~~~  172 (274)
                      ++.+|||+|||+|..+..++. .+.+|+|+|+|+.+++.|+++....+...     +++|.+.|+..         ..++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            357999999999987765554 45799999999999999999876543211     26788888732         2356


Q ss_pred             CCeeEEEeccccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCC-------------------C-------------
Q 024008          173 ELFDLIFDYTFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISD-------------------H-------------  219 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~-------------------~-------------  219 (274)
                      ++||+|+|..+++++ +.++...+++++.++|+|||++++...+...                   .             
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  207 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRI  207 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccccc
Confidence            799999999999875 3345578999999999999999886642110                   0             


Q ss_pred             ----CCC-----CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          220 ----VGG-----PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       220 ----~~~-----~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                          ..+     +.+.++.+++.++++++||+++......
T Consensus       208 ~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~  247 (302)
T 2vdw_A          208 VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFA  247 (302)
T ss_dssp             EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHH
T ss_pred             ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChH
Confidence                000     1134577999999999999999987644

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.72  E-value=5.4e-18  Score=139.43  Aligned_cols=136  Identities=17%  Similarity=0.096  Sum_probs=101.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEe-
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFD-  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~-  180 (274)
                      ..++.+|||+|||+|..+..+++.+. +|+|+|+++.+++.|+++....+  .+++++.+|+.+.   .++++||+|++ 
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence            44567999999999999999988554 99999999999999999987765  5799999998763   55689999998 


Q ss_pred             cccc--cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc----cCHHHHHHHHhcCCCcE
Q 024008          181 YTFF--CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK----VSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       181 ~~~~--~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Gf~~  243 (274)
                      ...+  ..........++.++.++|||||++++.++..........+.    ...+.....+.++||..
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            4443  223334566789999999999999998764421110011111    12345567788999985

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.72  E-value=6.7e-17  Score=131.29  Aligned_cols=128  Identities=22%  Similarity=0.239  Sum_probs=105.7

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccccc
Q 024008          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~  187 (274)
                      +.+|||+|||+|..+..++..    +++|+++.+++.++++        +++++.+|+.. ..+.++||+|++..+++++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICFV  115 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhhc
Confidence            789999999999999988776    9999999999999887        37899999877 3445789999999999998


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +  +...+++++.++|+|||.+++........             .......++.+++.++++++||+++.+....
T Consensus       116 ~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~  189 (219)
T 1vlm_A          116 D--DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL  189 (219)
T ss_dssp             S--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             c--CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence            5  34678999999999999999987654311             0111233689999999999999999888754

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.72  E-value=7.3e-17  Score=135.79  Aligned_cols=140  Identities=16%  Similarity=0.167  Sum_probs=110.3

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  174 (274)
                      .+..++.....++.+|||+|||+|..+..+++  ++.+++++|+|+.+++.|+++....+.. +++++.+|+.+..+.++
T Consensus        98 l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~  176 (276)
T 2b3t_A           98 LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQQ  176 (276)
T ss_dssp             HHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTTCC
T ss_pred             HHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcccCC
Confidence            34444444334567999999999999999986  5789999999999999999998876654 69999999988665678


Q ss_pred             eeEEEecccccccCh-----------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHH
Q 024008          175 FDLIFDYTFFCAIEP-----------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSD  231 (274)
Q Consensus       175 fD~v~~~~~~~~~~~-----------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      ||+|+++.++.....                       .....++..+.++|+|||++++...           ....++
T Consensus       177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-----------~~~~~~  245 (276)
T 2b3t_A          177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-----------WQQGEA  245 (276)
T ss_dssp             EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------SSCHHH
T ss_pred             ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------chHHHH
Confidence            999999866543211                       3457889999999999999988641           125789


Q ss_pred             HHHHHhcCCCcEEEEee
Q 024008          232 YEEVLQPMGFQAISIVD  248 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~  248 (274)
                      +.++++++||..+.+..
T Consensus       246 ~~~~l~~~Gf~~v~~~~  262 (276)
T 2b3t_A          246 VRQAFILAGYHDVETCR  262 (276)
T ss_dssp             HHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHCCCcEEEEEe
Confidence            99999999998765543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.72  E-value=2.4e-17  Score=137.08  Aligned_cols=133  Identities=19%  Similarity=0.238  Sum_probs=109.1

Q ss_pred             HHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEE
Q 024008          100 HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIF  179 (274)
Q Consensus       100 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~  179 (274)
                      +.+.....++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++...++..  +++..+|+....+.++||+|+
T Consensus       112 ~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv  189 (254)
T 2nxc_A          112 KALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPFDLLV  189 (254)
T ss_dssp             HHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEE
T ss_pred             HHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCCCEEE
Confidence            333333456789999999999999999988889999999999999999999887654  899999987754567899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++...+     ....++..+.++|+|||++++.....          .+.+++.+.++++||+++.+...
T Consensus       190 ~n~~~~-----~~~~~l~~~~~~LkpgG~lils~~~~----------~~~~~v~~~l~~~Gf~~~~~~~~  244 (254)
T 2nxc_A          190 ANLYAE-----LHAALAPRYREALVPGGRALLTGILK----------DRAPLVREAMAGAGFRPLEEAAE  244 (254)
T ss_dssp             EECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG----------GGHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ECCcHH-----HHHHHHHHHHHHcCCCCEEEEEeecc----------CCHHHHHHHHHHCCCEEEEEecc
Confidence            875543     34678899999999999999876433          25789999999999999887653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.72  E-value=2.5e-16  Score=127.02  Aligned_cols=129  Identities=19%  Similarity=0.194  Sum_probs=104.2

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCee
Q 024008           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD  176 (274)
                      .+++.....++.+|||+|||+|..+..+   +. +++++|+++.+++.++++.      .+++++.+|+.+ ..++++||
T Consensus        27 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD   97 (211)
T 2gs9_A           27 ERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFD   97 (211)
T ss_dssp             HHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEE
T ss_pred             HHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEE
Confidence            3455544446789999999999999888   66 9999999999999999987      358999999987 44567899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------CCC----CCcccCHHHHHHHHhcCC
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------VGG----PPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----------~~~----~~~~~~~~~~~~~~~~~G  240 (274)
                      +|++..++++++  +...++.++.++|+|||.+++........          ...    ....++.+++.++++  |
T Consensus        98 ~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A           98 VVLLFTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             EEEEESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             EEEEcChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            999999999986  34688999999999999999988655321          111    123479999999999  7

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.72  E-value=1.5e-16  Score=127.83  Aligned_cols=132  Identities=11%  Similarity=0.012  Sum_probs=105.5

Q ss_pred             HHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCC
Q 024008           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTEL  174 (274)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~  174 (274)
                      ..++... ..++.+|||+|||+|..+..+++.+  .+++++|+++.+++.|+++....+. ++++++.+|+.+.. ..++
T Consensus        30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCC
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCC
Confidence            3344443 3456799999999999999998844  7999999999999999999887766 67999999997643 3378


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      ||+|++..+++     ....+++++.++|+|||++++.....          .+.+++.++++++|| .+++.
T Consensus       109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~l~~~g~-~~~~~  165 (204)
T 3e05_A          109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL----------DTLTKAVEFLEDHGY-MVEVA  165 (204)
T ss_dssp             CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH----------HHHHHHHHHHHHTTC-EEEEE
T ss_pred             CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc----------ccHHHHHHHHHHCCC-ceeEE
Confidence            99999887765     33578999999999999999976432          257889999999999 44433

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.71  E-value=9.8e-17  Score=125.73  Aligned_cols=126  Identities=15%  Similarity=0.034  Sum_probs=104.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--CCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++.  +.+++++|+++.+++.|+++....+...++ ++.+|.....+.  ++||+|++..
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence            45579999999999999999884  679999999999999999999888776678 888988664433  7899999998


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++++      ..+++++.++|+|||++++.....          .+...+.++++..|+.+..+...
T Consensus       103 ~~~~------~~~l~~~~~~L~~gG~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (178)
T 3hm2_A          103 GLTA------PGVFAAAWKRLPVGGRLVANAVTV----------ESEQMLWALRKQFGGTISSFAIS  153 (178)
T ss_dssp             -TTC------TTHHHHHHHTCCTTCEEEEEECSH----------HHHHHHHHHHHHHCCEEEEEEEE
T ss_pred             cccH------HHHHHHHHHhcCCCCEEEEEeecc----------ccHHHHHHHHHHcCCeeEEEEee
Confidence            8876      357899999999999999877433          25678888999999888776553

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.71  E-value=7.4e-17  Score=130.61  Aligned_cols=131  Identities=14%  Similarity=0.035  Sum_probs=103.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++  ++.+++|+|+++.+++.|+++....++ .++.++.+|+...   .+.++||+|+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            4567999999999999999987  467999999999999999999887665 5799999999873   456789999988


Q ss_pred             ccccccChh------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          182 TFFCAIEPE------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~~------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ....+....      ....++..+.++|+|||.+++.....          -..+++.+.++++||..+.+..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~  181 (214)
T 1yzh_A          119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR----------GLFEYSLVSFSQYGMKLNGVWL  181 (214)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH----------HHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH----------HHHHHHHHHHHHCCCeeeeccc
Confidence            654322110      12468999999999999998875211          0236777889999999888764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.71  E-value=1.9e-16  Score=132.05  Aligned_cols=132  Identities=15%  Similarity=0.153  Sum_probs=108.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+++.+++.|++++...++.++++++.+|+.+..   +.++||+|+++.+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP  128 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP  128 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence            578999999999999999998655 999999999999999999998888778999999998843   4689999999877


Q ss_pred             cccc------C------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          184 FCAI------E------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       184 ~~~~------~------------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      +...      .            ......++..+.++|+|||++++....           ....++.+.++++||....
T Consensus       129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------~~~~~~~~~l~~~~~~~~~  197 (259)
T 3lpm_A          129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP-----------ERLLDIIDIMRKYRLEPKR  197 (259)
T ss_dssp             C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-----------TTHHHHHHHHHHTTEEEEE
T ss_pred             CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-----------HHHHHHHHHHHHCCCceEE
Confidence            6433      0            123467999999999999999986522           1577899999999999888


Q ss_pred             Eeecc
Q 024008          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      +....
T Consensus       198 ~~~v~  202 (259)
T 3lpm_A          198 IQFVH  202 (259)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            77643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.71  E-value=1e-16  Score=127.92  Aligned_cols=148  Identities=16%  Similarity=0.110  Sum_probs=108.6

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCC
Q 024008           99 VHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE  173 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~  173 (274)
                      ..++.....++.+|||+|||+|..+..+++   +..+++++|+++.+++.|+++....++.++++++.+|+...  ..++
T Consensus        13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   92 (197)
T 3eey_A           13 HDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDC   92 (197)
T ss_dssp             HHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCS
T ss_pred             HHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccC
Confidence            333333345678999999999999998887   34699999999999999999998887767899999998773  4557


Q ss_pred             CeeEEEecccccc-------cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH---hcCCCcE
Q 024008          174 LFDLIFDYTFFCA-------IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL---QPMGFQA  243 (274)
Q Consensus       174 ~fD~v~~~~~~~~-------~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Gf~~  243 (274)
                      +||+|+++..+..       ........++.++.++|+|||++++..+......     ......+.+++   ...+|.+
T Consensus        93 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~v  167 (197)
T 3eey_A           93 PVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTG-----FEEKEKVLEFLKGVDQKKFIV  167 (197)
T ss_dssp             CEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTB-----SHHHHHHHHHHTTSCTTTEEE
T ss_pred             CceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCc-----HHHHHHHHHHHHhCCCCcEEE
Confidence            8999998875511       1223456799999999999999999886542211     11233344444   4567888


Q ss_pred             EEEeeccc
Q 024008          244 ISIVDNKL  251 (274)
Q Consensus       244 ~~~~~~~~  251 (274)
                      ........
T Consensus       168 ~~~~~~~~  175 (197)
T 3eey_A          168 QRTDFINQ  175 (197)
T ss_dssp             EEEEETTC
T ss_pred             EEEEeccC
Confidence            77766544

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.71  E-value=3.3e-16  Score=124.11  Aligned_cols=133  Identities=17%  Similarity=0.158  Sum_probs=106.7

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCCCCC
Q 024008           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCPTE  173 (274)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~  173 (274)
                      .....++.... .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+..+ +++++.+|+.+..+.+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  118 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence            44445555443 356799999999999999998888899999999999999999988776543 4999999998866677


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                      +||+|+++.++++ ..+....+++++.++|+|||.+++......          ...++.+.+++.
T Consensus       119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------~~~~~~~~l~~~  173 (194)
T 1dus_A          119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ----------GAKSLAKYMKDV  173 (194)
T ss_dssp             CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH----------HHHHHHHHHHHH
T ss_pred             CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC----------ChHHHHHHHHHH
Confidence            9999999888775 235667899999999999999999875432          244577777776

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.70  E-value=3.2e-16  Score=137.16  Aligned_cols=132  Identities=16%  Similarity=0.203  Sum_probs=108.7

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      ..+|||||||+|..+..+++  ++.+++++|+ +.+++.+++.       ++++|+.+|+++..+.+  |+|++..++|+
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p~~--D~v~~~~vlh~  273 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGVPKG--DAIFIKWICHD  273 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCCC--SEEEEESCGGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCCCCC--CEEEEechhhc
Confidence            47999999999999999988  7789999999 8888766532       47999999998855543  99999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-------------------CCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-------------------PPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      ++++....++++++++|+|||++++.+.........                   .....+.+++.++++++||+.+++.
T Consensus       274 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~  353 (368)
T 3reo_A          274 WSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVA  353 (368)
T ss_dssp             BCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEE
Confidence            998888899999999999999999988654332111                   1123478999999999999999987


Q ss_pred             ecc
Q 024008          248 DNK  250 (274)
Q Consensus       248 ~~~  250 (274)
                      ...
T Consensus       354 ~~~  356 (368)
T 3reo_A          354 SCA  356 (368)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.69  E-value=1.6e-16  Score=125.67  Aligned_cols=126  Identities=21%  Similarity=0.170  Sum_probs=104.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+...++++..+|+....+. ++||+|++..++
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCch
Confidence            3456899999999999999999977999999999999999999988777656899999998763333 689999998876


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      +++     ..+++.+.++|+|||.+++.....          .+..++.++++++||.+..+
T Consensus       111 ~~~-----~~~l~~~~~~l~~gG~l~~~~~~~----------~~~~~~~~~l~~~g~~~~~~  157 (192)
T 1l3i_A          111 GEL-----QEILRIIKDKLKPGGRIIVTAILL----------ETKFEAMECLRDLGFDVNIT  157 (192)
T ss_dssp             TCH-----HHHHHHHHHTEEEEEEEEEEECBH----------HHHHHHHHHHHHTTCCCEEE
T ss_pred             HHH-----HHHHHHHHHhcCCCcEEEEEecCc----------chHHHHHHHHHHCCCceEEE
Confidence            543     578899999999999999887432          25678889999999955443

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.69  E-value=3.7e-16  Score=125.60  Aligned_cols=123  Identities=13%  Similarity=0.153  Sum_probs=100.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      ++.+|||+|||+|..+..++.  ++.+++++|+++.+++.++++....+..+ ++++.+|+....+.++||+|+++.+ .
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~~-~  142 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRAF-A  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSCS-S
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCccCCcCEEEEecc-C
Confidence            468999999999999998887  57899999999999999999988776644 9999999988666678999997643 2


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                           ....++..+.++|+|||.+++....           ...+++.++++  ||.++.+....
T Consensus       143 -----~~~~~l~~~~~~L~~gG~l~~~~~~-----------~~~~~~~~~~~--g~~~~~~~~~~  189 (207)
T 1jsx_A          143 -----SLNDMVSWCHHLPGEQGRFYALKGQ-----------MPEDEIALLPE--EYQVESVVKLQ  189 (207)
T ss_dssp             -----SHHHHHHHHTTSEEEEEEEEEEESS-----------CCHHHHHTSCT--TEEEEEEEEEE
T ss_pred             -----CHHHHHHHHHHhcCCCcEEEEEeCC-----------CchHHHHHHhc--CCceeeeeeec
Confidence                 2357899999999999999987521           14677777776  99988876544

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.69  E-value=2.2e-16  Score=133.96  Aligned_cols=138  Identities=17%  Similarity=0.171  Sum_probs=100.3

Q ss_pred             CCCeEEEEcCCcchhHHHh----hC--CCCeE--EEEeCChHHHHHHHHHhhcCCCCcceEE--EEcccCCC-------C
Q 024008          108 PKGRALVPGCGTGYDVVAM----AS--PERYV--VGLEISDIAIKKAEELSSSLPNAKFVSF--LKADFFTW-------C  170 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l----~~--~~~~v--~~iD~s~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~-------~  170 (274)
                      ++.+|||||||+|..+..+    +.  ++..+  +++|+|+++++.|++++...+...++.+  ..++..+.       .
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            4579999999999765433    22  45544  9999999999999999765321134544  45555432       3


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------CC--CCCcccCHHHHHHHHh
Q 024008          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------VG--GPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~  237 (274)
                      ++++||+|++..++++++  +...++.+++++|||||++++........           ..  .....++.+++.++++
T Consensus       132 ~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLD  209 (292)
T ss_dssp             CCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHH
T ss_pred             CCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHH
Confidence            468899999999999996  34678999999999999999876543210           00  1123468999999999


Q ss_pred             cCCCcEEEEe
Q 024008          238 PMGFQAISIV  247 (274)
Q Consensus       238 ~~Gf~~~~~~  247 (274)
                      ++||+++...
T Consensus       210 ~aGf~~~~~~  219 (292)
T 2aot_A          210 NLGLKYECYD  219 (292)
T ss_dssp             HHTCCEEEEE
T ss_pred             HCCCceEEEE
Confidence            9999987643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.69  E-value=8e-17  Score=125.73  Aligned_cols=135  Identities=10%  Similarity=-0.024  Sum_probs=100.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..++.  ++++|+++|+|+.+++.+++++...+...++++  .|.....++++||+|++..++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L  125 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML  125 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence            4468999999999999999977  577999999999999999999988876556666  666555667889999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      |++  ++.+..+.++.+.|+|||+++...-..-..........-...+.+.+.+-++.+.+
T Consensus       126 HlL--~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~  184 (200)
T 3fzg_A          126 PVL--KQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDS  184 (200)
T ss_dssp             HHH--HHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEE
T ss_pred             Hhh--hhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeee
Confidence            999  45556677999999999998876622211111111222356667777554444433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.69  E-value=8.3e-17  Score=135.04  Aligned_cols=103  Identities=15%  Similarity=0.089  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGTGYDV-VAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      ..++.+|||||||+|..+ ..+++ .+++|+|+|+++++++.|++++...++ ++++|+++|+.+.. +++||+|++...
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~~~a~  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLMVAAL  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEEECTT
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEEECCC
Confidence            456689999999998765 44555 789999999999999999999988777 78999999998754 688999997654


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                         .  ++...+++++.++|+|||++++...+
T Consensus       198 ---~--~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          198 ---A--EPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             ---C--SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             ---c--cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence               2  34467899999999999999997743

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.69  E-value=2.8e-16  Score=134.53  Aligned_cols=142  Identities=17%  Similarity=0.151  Sum_probs=110.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCC------CCcceEEEEcccCCCC-------CC
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWC-------PT  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~-------~~  172 (274)
                      .++.+|||+|||+|..+..+++ .+.+++++|+++.+++.|+++....+      ...+++++++|+....       +.
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            3567999999999999998886 46699999999999999999875431      1246999999998742       24


Q ss_pred             CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC---------------C--------CC-C-----
Q 024008          173 ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS---------------D--------HV-G-----  221 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~--~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~---------------~--------~~-~-----  221 (274)
                      ++||+|++..+++++  +.+....++.++.++|+|||.+++...+..               .        .. .     
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  192 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG  192 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence            589999999999987  446678999999999999999998765321               0        00 0     


Q ss_pred             ------------CCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          222 ------------GPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       222 ------------~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                                  .+.+.++.+++.+++++.||+++....
T Consensus       193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~  231 (313)
T 3bgv_A          193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKT  231 (313)
T ss_dssp             CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEE
T ss_pred             ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecC
Confidence                        011235788999999999999998876

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.69  E-value=2.1e-16  Score=133.17  Aligned_cols=133  Identities=12%  Similarity=0.035  Sum_probs=108.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++..+++.++++++.+|+.+..+.++||+|++....
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~  202 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence            34578999999999999999998666 69999999999999999999888877799999999986667899999986553


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ..      ..++..+.++|+|||.+++..+......    ..-..+++.+.++++||.+..+..
T Consensus       203 ~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~----~~~~~~~i~~~~~~~G~~~~~~~~  256 (278)
T 2frn_A          203 RT------HEFIPKALSIAKDGAIIHYHNTVPEKLM----PREPFETFKRITKEYGYDVEKLNE  256 (278)
T ss_dssp             SG------GGGHHHHHHHEEEEEEEEEEEEEEGGGT----TTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             hH------HHHHHHHHHHCCCCeEEEEEEeeccccc----cccHHHHHHHHHHHcCCeeEEeee
Confidence            32      3577899999999999999887642211    112568889999999999877433

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.69  E-value=1.7e-16  Score=130.78  Aligned_cols=130  Identities=16%  Similarity=0.183  Sum_probs=103.1

Q ss_pred             CCCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~~  181 (274)
                      ++.+|||+|||+|..+..++  .++.+|+++|+++.+++.|+++....++. +++++.+|+.+...    .++||+|++.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEEe
Confidence            46799999999999999888  57889999999999999999998877664 59999999876331    4789999987


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      .+      .....+++.+.++|+|||.+++....        .......++.+.++.+||.++.+.....+
T Consensus       149 ~~------~~~~~~l~~~~~~LkpgG~l~~~~g~--------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  205 (240)
T 1xdz_A          149 AV------ARLSVLSELCLPLVKKNGLFVALKAA--------SAEEELNAGKKAITTLGGELENIHSFKLP  205 (240)
T ss_dssp             CC------SCHHHHHHHHGGGEEEEEEEEEEECC---------CHHHHHHHHHHHHHTTEEEEEEEEEECT
T ss_pred             cc------CCHHHHHHHHHHhcCCCCEEEEEeCC--------CchHHHHHHHHHHHHcCCeEeEEEEEecC
Confidence            63      23467899999999999999886421        11123456778889999999888765433

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.68  E-value=4.3e-16  Score=130.88  Aligned_cols=132  Identities=15%  Similarity=0.123  Sum_probs=106.5

Q ss_pred             CCeEEEEcCCc---chhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------------CC
Q 024008          109 KGRALVPGCGT---GYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------------CP  171 (274)
Q Consensus       109 ~~~vLDiG~G~---G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------------~~  171 (274)
                      ..+|||||||+   |..+..+.+  ++.+|+++|+|+.+++.|++++...   ++++++.+|+.+.            .+
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccCC
Confidence            37999999999   988766654  6789999999999999999998543   5799999999752            22


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------CCCCCcccCHHHHHHHHhcC
Q 024008          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------VGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~  239 (274)
                      ..+||+|++..++++++++....+++++.++|+|||++++..+.....            ...+....+.+++.++|  .
T Consensus       155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l--~  232 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQF--G  232 (274)
T ss_dssp             TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTT--T
T ss_pred             CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHh--C
Confidence            358999999999999987667889999999999999999988765320            01123346899999999  4


Q ss_pred             CCcEEE
Q 024008          240 GFQAIS  245 (274)
Q Consensus       240 Gf~~~~  245 (274)
                      ||++++
T Consensus       233 G~~l~~  238 (274)
T 2qe6_A          233 DFELVE  238 (274)
T ss_dssp             TCEECT
T ss_pred             CCeEcc
Confidence            998765

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.68  E-value=5e-16  Score=135.74  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=108.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +..+|||||||+|..+..+++  ++.+++++|+ +.+++.|++.       ++++|+.+|+++..+.+  |+|++..++|
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~--D~v~~~~vlh  270 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFKEVPSG--DTILMKWILH  270 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCCC--SEEEEESCGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCCCCCCC--CEEEehHHhc
Confidence            347999999999999999987  7789999999 8887766532       57999999998855543  9999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-------------------CCcccCHHHHHHHHhcCCCcEEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-------------------PPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      +++++....++++++++|+|||++++.+....+....                   .....+.+++.++++++||+.+++
T Consensus       271 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~  350 (364)
T 3p9c_A          271 DWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKS  350 (364)
T ss_dssp             GSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEE
Confidence            9998888899999999999999999988654332111                   112247899999999999999998


Q ss_pred             eecc
Q 024008          247 VDNK  250 (274)
Q Consensus       247 ~~~~  250 (274)
                      ....
T Consensus       351 ~~~~  354 (364)
T 3p9c_A          351 TYIY  354 (364)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            7653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.68  E-value=7.7e-17  Score=131.66  Aligned_cols=134  Identities=15%  Similarity=0.166  Sum_probs=105.4

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCC-
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCP-  171 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~-  171 (274)
                      ...+..++.....++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++.      ++++++.+|+..  +.+ 
T Consensus        35 ~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~  108 (226)
T 3m33_A           35 ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANA------PHADVYEWNGKGELPAGL  108 (226)
T ss_dssp             THHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHC------TTSEEEECCSCSSCCTTC
T ss_pred             HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhC------CCceEEEcchhhccCCcC
Confidence            44455555443456789999999999999999998899999999999999999983      469999999965  333 


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      +++||+|+++.        ....++.++.++|+|||.++...           ...+..++.+.++++||..+.+.....
T Consensus       109 ~~~fD~v~~~~--------~~~~~l~~~~~~LkpgG~l~~~~-----------~~~~~~~~~~~l~~~Gf~~~~~~~~~~  169 (226)
T 3m33_A          109 GAPFGLIVSRR--------GPTSVILRLPELAAPDAHFLYVG-----------PRLNVPEVPERLAAVGWDIVAEDHVSV  169 (226)
T ss_dssp             CCCEEEEEEES--------CCSGGGGGHHHHEEEEEEEEEEE-----------SSSCCTHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CCCEEEEEeCC--------CHHHHHHHHHHHcCCCcEEEEeC-----------CcCCHHHHHHHHHHCCCeEEEEEeeee
Confidence            67999999872        12356789999999999998221           112567899999999999988877654


Q ss_pred             cc
Q 024008          252 AI  253 (274)
Q Consensus       252 ~~  253 (274)
                      ..
T Consensus       170 ~~  171 (226)
T 3m33_A          170 LA  171 (226)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.68  E-value=9.6e-16  Score=142.72  Aligned_cols=159  Identities=10%  Similarity=0.109  Sum_probs=117.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhc------CCCCcceEEEEcccCC-CCCCCCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSS------LPNAKFVSFLKADFFT-WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~-~~~~~~fD  176 (274)
                      .++.+|||+|||+|..+..+++.+   .+|+|+|+++.+++.|++++..      .+. .+++|+++|+.. ....++||
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sFD  798 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDVD  798 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCee
Confidence            367899999999999999999966   7999999999999999986542      222 479999999988 44558999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC------------------------CCCCCCcccCHHHH
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD------------------------HVGGPPYKVSVSDY  232 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~------------------------~~~~~~~~~~~~~~  232 (274)
                      +|++..+++|++++....+++++.++|+|| .+++.......                        ......+..+.+++
T Consensus       799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEF  877 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQF  877 (950)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHHHH
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecHHHH
Confidence            999999999999877778999999999999 66665533210                        00111233567777


Q ss_pred             HH----HHhcCCCcEEEEeecccccCCccchhHHHHhhh
Q 024008          233 EE----VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       233 ~~----~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      ..    +++..||.+.-...-..+........++++|.|
T Consensus       878 r~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAVFtR  916 (950)
T 3htx_A          878 NQWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRR  916 (950)
T ss_dssp             HHHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEEEEE
T ss_pred             HHHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEEEEE
Confidence            77    777889976544433222222233566777776

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.68  E-value=3.6e-16  Score=129.77  Aligned_cols=115  Identities=10%  Similarity=0.018  Sum_probs=89.2

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC-CCCCCCCe
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF-TWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~f  175 (274)
                      +..++.... .++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.|+++.....  ....+...+.. .....++|
T Consensus        34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~~~~~~~~~f  111 (261)
T 3iv6_A           34 RENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAEIPKELAGHF  111 (261)
T ss_dssp             HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSCCCGGGTTCC
T ss_pred             HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccccccccCCCc
Confidence            344444443 455799999999999999999999999999999999999999986541  12233322220 11225689


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      |+|+++.+++++..+....++.++.++| |||++++....
T Consensus       112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            9999999999998778888999999999 99999987643

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.68  E-value=3.2e-16  Score=123.10  Aligned_cols=124  Identities=12%  Similarity=0.082  Sum_probs=103.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+. .+++++.+|+.+..+.++||+|++..+ . 
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~i~~~~~-~-  110 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDKLEFNKAFIGGT-K-  110 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGGCCCSEEEECSC-S-
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccCCCCcEEEECCc-c-
Confidence            4567999999999999999999888999999999999999999987765 469999999987555578999999888 2 


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                          ....++..+.++  |||.+++......          ...++.+.++++||.+..+...
T Consensus       111 ----~~~~~l~~~~~~--~gG~l~~~~~~~~----------~~~~~~~~l~~~g~~~~~~~~~  157 (183)
T 2yxd_A          111 ----NIEKIIEILDKK--KINHIVANTIVLE----------NAAKIINEFESRGYNVDAVNVF  157 (183)
T ss_dssp             ----CHHHHHHHHHHT--TCCEEEEEESCHH----------HHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ----cHHHHHHHHhhC--CCCEEEEEecccc----------cHHHHHHHHHHcCCeEEEEEee
Confidence                335678888888  9999999874332          4678999999999987776543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.67  E-value=1.3e-15  Score=124.08  Aligned_cols=136  Identities=16%  Similarity=0.134  Sum_probs=101.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v  178 (274)
                      ..++.+|||+|||+|..+..+++   +..+|+++|+++++++.+++++...   .++..+.+|...    ....+.+|+|
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~vDvV  151 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEGVDGL  151 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccceEEEE
Confidence            45678999999999999999987   5679999999999999999988765   478899998876    2345789999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++...  +.  ++...++.++.+.|||||++++...........++.. .-.+..+.++++||++++..+.
T Consensus       152 f~d~~--~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~-~~~~ev~~L~~~GF~l~e~i~L  217 (233)
T 4df3_A          152 YADVA--QP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSE-VYKREIKTLMDGGLEIKDVVHL  217 (233)
T ss_dssp             EECCC--CT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCH-HHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEecc--CC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHH-HHHHHHHHHHHCCCEEEEEEcc
Confidence            86432  22  3556789999999999999998753332111112211 2244567788899999887663

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.67  E-value=1.7e-15  Score=122.69  Aligned_cols=134  Identities=13%  Similarity=-0.008  Sum_probs=108.6

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-  173 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-  173 (274)
                      .+..+... ..++.+|||||||+|..++.+++.+  .+|+++|+++.+++.|++++..+++.+++++..+|..+..+.+ 
T Consensus         5 RL~~l~~~-v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~   83 (225)
T 3kr9_A            5 RLELVASF-VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETD   83 (225)
T ss_dssp             HHHHHHTT-SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred             HHHHHHHh-CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCc
Confidence            34444443 3456799999999999999999854  4899999999999999999999998888999999998755444 


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +||+|+..+.    ..+....+++.....|+++|++++...            .....+.+++.++||.+++..
T Consensus        84 ~~D~IviaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~------------~~~~~vr~~L~~~Gf~i~~e~  141 (225)
T 3kr9_A           84 QVSVITIAGM----GGRLIARILEEGLGKLANVERLILQPN------------NREDDLRIWLQDHGFQIVAES  141 (225)
T ss_dssp             CCCEEEEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEES------------SCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCEEEEcCC----ChHHHHHHHHHHHHHhCCCCEEEEECC------------CCHHHHHHHHHHCCCEEEEEE
Confidence            6999986443    334567889999999999999888652            157899999999999988764

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.67  E-value=1.7e-15  Score=132.69  Aligned_cols=135  Identities=16%  Similarity=0.134  Sum_probs=106.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.|++++..++.  +++++.+|+.+... .++||+|+++.+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~~~~~fD~Ii~npp~~  309 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALTEEARFDIIVTNPPFH  309 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccccCCCeEEEEECCchh
Confidence            3567999999999999999999889999999999999999999988764  38999999988544 47999999999988


Q ss_pred             c---cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH------hcCCCcEEEEeecccc
Q 024008          186 A---IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL------QPMGFQAISIVDNKLA  252 (274)
Q Consensus       186 ~---~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Gf~~~~~~~~~~~  252 (274)
                      +   ...+....++.++.++|+|||.++++.....      +   -...+.+.+      +..||++.....+..+
T Consensus       310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l------~---~~~~l~~~f~~v~~l~~~gF~Vl~a~~~~~~  376 (381)
T 3dmg_A          310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL------K---YEPLLEEKFGAFQTLKVAEYKVLFAEKRGRH  376 (381)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS------C---HHHHHHHHHSCCEEEEESSSEEEEEECC---
T ss_pred             hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC------C---hHHHHHHhhccEEEEeCCCEEEEEEEEeccc
Confidence            7   3346678899999999999999999874321      1   122233322      6678888777665543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.67  E-value=1.5e-15  Score=123.18  Aligned_cols=136  Identities=13%  Similarity=0.021  Sum_probs=110.8

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  172 (274)
                      ...+..+... ..++.+|||||||+|..++.+++.+  .+|+++|+++.+++.|++++..+++.+++++..+|..+...+
T Consensus         9 s~RL~~i~~~-v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A            9 SKRLQKVANY-VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             CHHHHHHHTT-SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             HHHHHHHHHh-CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc
Confidence            4455555443 3456799999999999999999865  389999999999999999999999888999999999985544


Q ss_pred             -CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          173 -ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       173 -~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                       ++||+|+..+.    ..+....++....+.|+++|++++...            ...+.+.+++.++||.+++..
T Consensus        88 ~~~~D~IviaGm----Gg~lI~~IL~~~~~~l~~~~~lIlqp~------------~~~~~lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A           88 ADNIDTITICGM----GGRLIADILNNDIDKLQHVKTLVLQPN------------NREDDLRKWLAANDFEIVAED  147 (230)
T ss_dssp             GGCCCEEEEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEES------------SCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccccCEEEEeCC----chHHHHHHHHHHHHHhCcCCEEEEECC------------CChHHHHHHHHHCCCEEEEEE
Confidence             37999885443    334567788999999999999888762            147899999999999988866

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.66  E-value=7.3e-16  Score=135.12  Aligned_cols=132  Identities=17%  Similarity=0.244  Sum_probs=106.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++  ++.+++++|+ +.+++.|++.       ++++++.+|+++..+.  ||+|++..+++
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~v~~~~~lh  278 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFASVPQ--GDAMILKAVCH  278 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC--EEEEEEESSGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCcccCCCC--CCEEEEecccc
Confidence            457999999999999999987  5678999999 8888776541       4699999999874433  99999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC------------------CCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG------------------PPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +++++....++++++++|+|||++++.++........                  .....+.+++.++++++||+++++.
T Consensus       279 ~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  358 (372)
T 1fp1_D          279 NWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA  358 (372)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEE
Confidence            9987777799999999999999999986543322111                  0123479999999999999999887


Q ss_pred             ec
Q 024008          248 DN  249 (274)
Q Consensus       248 ~~  249 (274)
                      ..
T Consensus       359 ~~  360 (372)
T 1fp1_D          359 CR  360 (372)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.66  E-value=2.8e-16  Score=130.15  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=104.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~~  181 (274)
                      ++.+|||+|||+|..+..++.  ++.+|+++|+++.+++.|+++....++. +++++.+|+.+...    .++||+|++.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEEC
Confidence            457999999999999988876  5789999999999999999999887764 49999999987432    4789999987


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      .+-      ....+++.+.++|+|||++++....        ...-...++.+.++..||.+..+.....+
T Consensus       159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~--------~~~~e~~~~~~~l~~~G~~~~~~~~~~~p  215 (249)
T 3g89_A          159 AVA------PLCVLSELLLPFLEVGGAAVAMKGP--------RVEEELAPLPPALERLGGRLGEVLALQLP  215 (249)
T ss_dssp             SSC------CHHHHHHHHGGGEEEEEEEEEEECS--------CCHHHHTTHHHHHHHHTEEEEEEEEEECT
T ss_pred             CcC------CHHHHHHHHHHHcCCCeEEEEEeCC--------CcHHHHHHHHHHHHHcCCeEEEEEEeeCC
Confidence            642      2357889999999999999887621        11223456777888899999998876444

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.66  E-value=7.9e-16  Score=125.97  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=99.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~  181 (274)
                      ++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.++++....   .++.++.+|+..    ....+.||+|+. 
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~-  149 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIYE-  149 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCCEEEEEE-
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCccEEEEEE-
Confidence            4579999999999999999874 3 69999999999999999997655   579999999986    333478999992 


Q ss_pred             cccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          182 TFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       182 ~~~~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                          ++ ++.....++.++.++|+|||++++...........++..+..+++. +++++||+++.+...
T Consensus       150 ----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~  213 (230)
T 1fbn_A          150 ----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDI  213 (230)
T ss_dssp             ----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEEC
T ss_pred             ----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEcc
Confidence                22 2334567799999999999999987322111111111122346777 889999998887753

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.66  E-value=6.1e-16  Score=125.21  Aligned_cols=131  Identities=13%  Similarity=0.039  Sum_probs=100.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++  ++.+++|+|+++.+++.|++++...++ .++.++.+|+...   .+++.||.|+++
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence            3467999999999999999987  578999999999999999999887765 4699999999872   456789999876


Q ss_pred             ccccccChh------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          182 TFFCAIEPE------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~~------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ....+....      ....+++.+.++|+|||.+++.....          ...+++.+.++.+||....+..
T Consensus       116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~----------~~~~~~~~~~~~~g~~~~~~~~  178 (213)
T 2fca_A          116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR----------GLFEYSLKSFSEYGLLLTYVSL  178 (213)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH----------HHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCccccccc
Confidence            443221110      02578999999999999999876211          0235667788888998876543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.66  E-value=5.5e-16  Score=134.89  Aligned_cols=131  Identities=14%  Similarity=0.174  Sum_probs=107.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++  ++.+++++|+ +.+++.|++.       .+++++.+|+++..+  .||+|++..+++
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p--~~D~v~~~~~lh  257 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFTSIP--NADAVLLKYILH  257 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccCCCC--CccEEEeehhhc
Confidence            457999999999999999987  5779999999 9988877642       359999999987444  399999999999


Q ss_pred             ccChhHHHHHHHHHHhcccC---CcEEEEEEccCCCCCCC-----------------CCcccCHHHHHHHHhcCCCcEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKP---DGELITLMFPISDHVGG-----------------PPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~---gG~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      +++++....++++++++|+|   ||++++.+.........                 .....+.+++.++++++||+.++
T Consensus       258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~  337 (352)
T 1fp2_A          258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK  337 (352)
T ss_dssp             GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeE
Confidence            99877777999999999999   99999987654322111                 01235789999999999999988


Q ss_pred             Eee
Q 024008          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       338 ~~~  340 (352)
T 1fp2_A          338 ISP  340 (352)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            876

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.65  E-value=1.7e-16  Score=141.20  Aligned_cols=147  Identities=17%  Similarity=0.176  Sum_probs=108.9

Q ss_pred             HHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceE-EEEcccCC-CCCCCC
Q 024008           98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFT-WCPTEL  174 (274)
Q Consensus        98 ~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~-~~~~~~  174 (274)
                      ...++..... ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++.    ...... +...+... ..++++
T Consensus        96 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~~~~~~l~~~~~~  171 (416)
T 4e2x_A           96 ARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKG----IRVRTDFFEKATADDVRRTEGP  171 (416)
T ss_dssp             HHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTT----CCEECSCCSHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcC----CCcceeeechhhHhhcccCCCC
Confidence            3444444433 4579999999999999999999999999999999999998762    111111 22223222 233578


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC--------C-CCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS--------D-HVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ||+|++.++++|++  +...+++++.++|+|||++++......        . ........++.+++.++++++||+++.
T Consensus       172 fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~  249 (416)
T 4e2x_A          172 ANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVD  249 (416)
T ss_dssp             EEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEE
T ss_pred             EEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEE
Confidence            99999999999995  567899999999999999998764311        0 011223346899999999999999999


Q ss_pred             Eeecc
Q 024008          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      +....
T Consensus       250 ~~~~~  254 (416)
T 4e2x_A          250 VQRLP  254 (416)
T ss_dssp             EEEEC
T ss_pred             EEEcc
Confidence            88854

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.65  E-value=1.3e-15  Score=120.86  Aligned_cols=108  Identities=11%  Similarity=-0.044  Sum_probs=91.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..++..+. +|+++|+++.+++.|++++...+. ++++++++|+.+.   .+.++||+|+++.
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence            5678999999999999997777655 899999999999999999988766 5799999999873   3367899999998


Q ss_pred             cccccChhHHHHHHHHHHh--cccCCcEEEEEEccC
Q 024008          183 FFCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPI  216 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~--~L~~gG~l~~~~~~~  216 (274)
                      ++++. .+....++..+.+  +|+|||++++.....
T Consensus       122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            87754 3566788999999  999999999977543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.65  E-value=1.7e-16  Score=129.62  Aligned_cols=146  Identities=13%  Similarity=0.092  Sum_probs=97.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhh--CCCCeEEEEeCC-hHHHHHH---HHHhhcCCCCcceEEEEcccCCCCC--CCCeeE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEIS-DIAIKKA---EELSSSLPNAKFVSFLKADFFTWCP--TELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~--~~~~~v~~iD~s-~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~  177 (274)
                      ..++.+|||||||+|..+..++  .++.+|+|+|+| +.+++.|   +++....++ .++.++.+|+.....  .+.+|.
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~  100 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADS  100 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEE
Confidence            4567899999999999999998  477899999999 5566555   777766665 469999999987521  245666


Q ss_pred             EEecccccccCh---hHHHHHHHHHHhcccCCcEEEEEEccCCCC------CCCCCcc----cCHHHHHHHHhcCCCcEE
Q 024008          178 IFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPISDH------VGGPPYK----VSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       178 v~~~~~~~~~~~---~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~~Gf~~~  244 (274)
                      |+++..+.....   .....++.++.++|||||.+++........      ..+.+..    +..+++.++++++||++.
T Consensus       101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~  180 (225)
T 3p2e_A          101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRID  180 (225)
T ss_dssp             EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEE
T ss_pred             EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCee
Confidence            665544332100   011467899999999999998833111110      0111111    122248999999999999


Q ss_pred             EEeecccc
Q 024008          245 SIVDNKLA  252 (274)
Q Consensus       245 ~~~~~~~~  252 (274)
                      .+......
T Consensus       181 ~~~~~~~~  188 (225)
T 3p2e_A          181 DVKELDNE  188 (225)
T ss_dssp             EEEEECHH
T ss_pred             eeeecCHH
Confidence            98876643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.64  E-value=2.8e-15  Score=122.58  Aligned_cols=136  Identities=11%  Similarity=0.011  Sum_probs=109.5

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  172 (274)
                      ...+..+... ..++.+|||||||+|..++.+++.+  .+|+++|+++.+++.|++++..+++.+++++..+|..+...+
T Consensus         9 s~RL~~i~~~-v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A            9 SKRLEKVASY-ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             CHHHHHHHTT-CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             hHHHHHHHHh-CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc
Confidence            4445555443 3456799999999999999999865  389999999999999999999999888899999999985554


Q ss_pred             C-CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          173 E-LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       173 ~-~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      + +||+|+..+.    ..+....+++...+.|++++++++.-.            ...+.+.+++.+.||.+++..
T Consensus        88 ~~~~D~Iviagm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~------------~~~~~lr~~L~~~Gf~i~~E~  147 (244)
T 3gnl_A           88 KDAIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQPN------------IAAWQLREWSEQNNWLITSEA  147 (244)
T ss_dssp             GGCCCEEEEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEES------------SCHHHHHHHHHHHTEEEEEEE
T ss_pred             cccccEEEEeCC----chHHHHHHHHHHHHHhCCCCEEEEEcC------------CChHHHHHHHHHCCCEEEEEE
Confidence            4 6999986433    334567788999999999999888752            147899999999999985544

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.64  E-value=6.5e-17  Score=130.41  Aligned_cols=130  Identities=15%  Similarity=0.116  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-----CCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-----ELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~fD~v~  179 (274)
                      .++.+|||+|||+|..+..+++.  +.+++|+|+++.+++.|+++....+.  +++++.+|+.+..+.     ++||+|+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~fD~i~  106 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIERAERGRPWHAIV  106 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHHHHHTTCCBSEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhhhhhccCcccEEE
Confidence            45679999999999999999884  66999999999999999999887764  689999999874444     8999999


Q ss_pred             ecccccccC------hhH------------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024008          180 DYTFFCAIE------PEM------------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEV  235 (274)
Q Consensus       180 ~~~~~~~~~------~~~------------------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ++.++....      +..                  ...+++++.++|+|||++++...+.          ...+++.++
T Consensus       107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~  176 (215)
T 4dzr_A          107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------NQADEVARL  176 (215)
T ss_dssp             ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT----------SCHHHHHHH
T ss_pred             ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC----------ccHHHHHHH
Confidence            987664321      111                  1678899999999999955555332          257889999


Q ss_pred             Hh--cCCCcEEEEee
Q 024008          236 LQ--PMGFQAISIVD  248 (274)
Q Consensus       236 ~~--~~Gf~~~~~~~  248 (274)
                      ++  ++||..+.+..
T Consensus       177 l~~~~~gf~~~~~~~  191 (215)
T 4dzr_A          177 FAPWRERGFRVRKVK  191 (215)
T ss_dssp             TGGGGGGTEECCEEE
T ss_pred             HHHhhcCCceEEEEE
Confidence            99  99997766554

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=2.5e-15  Score=125.35  Aligned_cols=130  Identities=18%  Similarity=0.157  Sum_probs=101.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhc---CCCCcceEEEEcccCCC--------CCCC
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFTW--------CPTE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~--------~~~~  173 (274)
                      .++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.|++++..   .++.++++++.+|+.+.        .+.+
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            3457999999999999999887  357999999999999999999988   77777899999999875        3467


Q ss_pred             CeeEEEecccccccC----------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024008          174 LFDLIFDYTFFCAIE----------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~----------------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      +||+|+++.++....                ......+++.+.++|+|||.+++.....           ...++.+.++
T Consensus       115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------~~~~~~~~l~  183 (260)
T 2ozv_A          115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ-----------SVAEIIAACG  183 (260)
T ss_dssp             CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG-----------GHHHHHHHHT
T ss_pred             CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH-----------HHHHHHHHHH
Confidence            899999997665321                1125678999999999999998865221           4567888888


Q ss_pred             cCCCcEEEEee
Q 024008          238 PMGFQAISIVD  248 (274)
Q Consensus       238 ~~Gf~~~~~~~  248 (274)
                      .. |..+.+..
T Consensus       184 ~~-~~~~~i~~  193 (260)
T 2ozv_A          184 SR-FGGLEITL  193 (260)
T ss_dssp             TT-EEEEEEEE
T ss_pred             hc-CCceEEEE
Confidence            74 77665554

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.63  E-value=6.5e-15  Score=124.16  Aligned_cols=135  Identities=10%  Similarity=0.041  Sum_probs=99.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeC-ChHHHHHHHHHh-----hcCCCC----cceEEEEcccCCC---C--
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEI-SDIAIKKAEELS-----SSLPNA----KFVSFLKADFFTW---C--  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~-s~~~~~~a~~~~-----~~~~~~----~~v~~~~~d~~~~---~--  170 (274)
                      .++.+|||+|||+|..+..+++.+. +|+++|+ ++.+++.|+++.     ...++.    +++++...|..+.   .  
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            4567999999999999999988777 9999999 899999999998     444433    4688887665541   1  


Q ss_pred             --CCCCeeEEEecccccccChhHHHHHHHHHHhccc---C--CcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-Cc
Q 024008          171 --PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK---P--DGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQ  242 (274)
Q Consensus       171 --~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~---~--gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-f~  242 (274)
                        +.++||+|++..++++.  +....+++.+.++|+   |  ||.+++.......     .......++.+.++++| |+
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~-----~~~~~~~~~~~~l~~~G~f~  230 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVTFTHHRP-----HLAERDLAFFRLVNADGALI  230 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-------------CTHHHHHHHHSTTEE
T ss_pred             hccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeec-----ccchhHHHHHHHHHhcCCEE
Confidence              35789999998888875  456788999999999   9  9988775432211     11113467778899999 99


Q ss_pred             EEEEee
Q 024008          243 AISIVD  248 (274)
Q Consensus       243 ~~~~~~  248 (274)
                      +..+..
T Consensus       231 v~~~~~  236 (281)
T 3bzb_A          231 AEPWLS  236 (281)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            988854

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.63  E-value=8.3e-16  Score=127.64  Aligned_cols=125  Identities=20%  Similarity=0.112  Sum_probs=104.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|++++...++.++++++.+|+.+..+.++||+|++...
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~  171 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLP  171 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECSS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECCC
Confidence            45679999999999999999874   779999999999999999999887776679999999998777788999997422


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC--CcEEEEee
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG--FQAISIVD  248 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--f~~~~~~~  248 (274)
                             ....+++++.++|+|||.+++.....          ....++.+.++++|  |..+.+.+
T Consensus       172 -------~~~~~l~~~~~~L~~gG~l~~~~~~~----------~~~~~~~~~l~~~g~~f~~~~~~e  221 (255)
T 3mb5_A          172 -------QPERVVEHAAKALKPGGFFVAYTPCS----------NQVMRLHEKLREFKDYFMKPRTIN  221 (255)
T ss_dssp             -------CGGGGHHHHHHHEEEEEEEEEEESSH----------HHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred             -------CHHHHHHHHHHHcCCCCEEEEEECCH----------HHHHHHHHHHHHcCCCccccEEEE
Confidence                   22457899999999999999876322          24678889999999  98877665

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.62  E-value=4.9e-15  Score=119.34  Aligned_cols=101  Identities=23%  Similarity=0.196  Sum_probs=87.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+++.+++.|+++....+.. +++++.+|+.+ ....++||+|++..++
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~i~~~~~~  153 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPFDAIIVTAAP  153 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEESSBC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCccEEEEccch
Confidence            345689999999999999999988889999999999999999999877654 69999999987 3345789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +++++        .+.++|+|||++++....
T Consensus       154 ~~~~~--------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          154 PEIPT--------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred             hhhhH--------HHHHhcccCcEEEEEEcC
Confidence            98863        578999999999998754

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.62  E-value=2.2e-15  Score=121.80  Aligned_cols=112  Identities=14%  Similarity=0.094  Sum_probs=93.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..++   .+++++|+++.                +++++.+|+.+ ..++++||+|++..+++
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  126 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR---NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM  126 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred             CCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence            456799999999999998883   69999999986                36788999987 34567899999999997


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +   .+...++.++.++|+|||.+++.++...        ..+.+++.++++++||+++....
T Consensus       127 ~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~--------~~~~~~~~~~l~~~Gf~~~~~~~  178 (215)
T 2zfu_A          127 G---TNIRDFLEEANRVLKPGGLLKVAEVSSR--------FEDVRTFLRAVTKLGFKIVSKDL  178 (215)
T ss_dssp             S---SCHHHHHHHHHHHEEEEEEEEEEECGGG--------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred             c---cCHHHHHHHHHHhCCCCeEEEEEEcCCC--------CCCHHHHHHHHHHCCCEEEEEec
Confidence            4   3456889999999999999999875432        12789999999999999988654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.61  E-value=1.3e-15  Score=127.99  Aligned_cols=124  Identities=18%  Similarity=0.168  Sum_probs=102.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|+++.... +. ++++++.+|+.+..++++||+|++. 
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~fD~Vi~~-  186 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISDQMYDAVIAD-  186 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCSCCEEEEEEC-
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcCCCccEEEEc-
Confidence            45579999999999999998874   789999999999999999998776 53 5799999999886666789999972 


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                          ++  ....+++++.++|+|||++++.....          ...+++.+.++++||..+++.+
T Consensus       187 ----~~--~~~~~l~~~~~~LkpgG~l~i~~~~~----------~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          187 ----IP--DPWNHVQKIASMMKPGSVATFYLPNF----------DQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             ----CS--CGGGSHHHHHHTEEEEEEEEEEESSH----------HHHHHHHHHSGGGTEEEEEEEE
T ss_pred             ----Cc--CHHHHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCeEEEEEE
Confidence                22  22467899999999999999987322          1356788889999999888776

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.61  E-value=2e-15  Score=123.80  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=97.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v~  179 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.+.++....   .+++++.+|+.+.    ...++||+|+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V~  152 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVIF  152 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEEE
Confidence            34579999999999999999873   479999999999888887777654   4699999999873    2357899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +..+    .++....++.++.++|+|||++++...........++...-..+ .++++++||+++....
T Consensus       153 ~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~  216 (233)
T 2ipx_A          153 ADVA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQLT  216 (233)
T ss_dssp             ECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEEE
T ss_pred             EcCC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEEe
Confidence            8654    22444567889999999999999966442111111111111123 5889999999988655

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.61  E-value=4.1e-15  Score=123.93  Aligned_cols=143  Identities=20%  Similarity=0.179  Sum_probs=107.8

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCee
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD  176 (274)
                      +..++.....++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++..     .  .++.+|+.. ..++++||
T Consensus        44 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~~~fD  116 (260)
T 2avn_A           44 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPSGAFE  116 (260)
T ss_dssp             HHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCTTCEE
T ss_pred             HHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCCCCEE
Confidence            344443332367899999999999999999999999999999999999998864     1  288899887 34567899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC---------C--------CCC------C-----CcccC
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD---------H--------VGG------P-----PYKVS  228 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~---------~--------~~~------~-----~~~~~  228 (274)
                      +|++..++.++.++ ...+++++.++|+|||.+++...+...         .        ..+      .     ...++
T Consensus       117 ~v~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (260)
T 2avn_A          117 AVLALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFK  195 (260)
T ss_dssp             EEEECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBC
T ss_pred             EEEEcchhhhcccc-HHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccC
Confidence            99998877666333 678999999999999999987654320         0        000      0     01467


Q ss_pred             HHHHHHHHhcCCCcEEEEeeccc
Q 024008          229 VSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       229 ~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      .+++.++   +||+++.+.....
T Consensus       196 ~~~l~~l---aGf~~~~~~~~~~  215 (260)
T 2avn_A          196 PEDLDSL---EGFETVDIRGIGV  215 (260)
T ss_dssp             GGGGSSC---TTEEEEEEEEECS
T ss_pred             HHHHHHh---cCceEEEEECCCC
Confidence            8888777   8999988876443

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.61  E-value=2.3e-15  Score=123.38  Aligned_cols=102  Identities=19%  Similarity=0.200  Sum_probs=87.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.|++++...++.++++++.+|+.+..+   .++||+|++.
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            3568999999999999999998  6789999999999999999999888877789999999987543   6899999976


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ....     ....+++.+.++|+|||++++..
T Consensus       150 ~~~~-----~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          150 AAKA-----QSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             TTSS-----SHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CcHH-----HHHHHHHHHHHhcCCCeEEEEee
Confidence            4432     34578999999999999998844

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.61  E-value=1.1e-14  Score=118.67  Aligned_cols=133  Identities=17%  Similarity=0.178  Sum_probs=98.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v~~  180 (274)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...   .+++++.+|+...    ...++||+|++
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            4579999999999999999863   479999999999999999988765   5799999999872    22468999997


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ..+    .+.....++.++.++|+|||.+++...........++..+..+++.++ .++ |++++....
T Consensus       150 ~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~  212 (227)
T 1g8a_A          150 DVA----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNL  212 (227)
T ss_dssp             CCC----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEEC
T ss_pred             CCC----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEecc
Confidence            654    223444568999999999999998732222111112223445677776 777 998877664

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.61  E-value=6.5e-15  Score=128.92  Aligned_cols=120  Identities=15%  Similarity=0.117  Sum_probs=94.7

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCc--ceEEEEcccCCC
Q 024008           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTW  169 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~  169 (274)
                      ......++.... .++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++...+++.+  +++|..+|+.+.
T Consensus       208 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~  287 (375)
T 4dcm_A          208 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG  287 (375)
T ss_dssp             CHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT
T ss_pred             cHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc
Confidence            333333444443 33479999999999999999884  7899999999999999999998776532  588899999987


Q ss_pred             CCCCCeeEEEecccccc---cChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          170 CPTELFDLIFDYTFFCA---IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~---~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+.++||+|+++.++++   +.......++.++.++|+|||+++++..
T Consensus       288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n  335 (375)
T 4dcm_A          288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  335 (375)
T ss_dssp             CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence            77789999999999875   3334456789999999999999999763

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.61  E-value=1.8e-15  Score=121.35  Aligned_cols=106  Identities=14%  Similarity=0.148  Sum_probs=87.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC---CCCC-eeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC---PTEL-FDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~---~~~~-fD~v~~~  181 (274)
                      ++.+|||+|||+|..+..++..+. +|+++|+++.+++.|++++...+.. ++++++.+|+.+..   +.++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            567999999999999998776664 8999999999999999999887764 57999999987632   2468 9999998


Q ss_pred             ccccccChhHHHHHHHHH--HhcccCCcEEEEEEccC
Q 024008          182 TFFCAIEPEMRAAWAQKI--KDFLKPDGELITLMFPI  216 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l--~~~L~~gG~l~~~~~~~  216 (274)
                      .+++ .  .....++..+  .++|+|||.+++.....
T Consensus       133 ~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          133 PPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            8855 2  3556778888  67899999999877544

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.61  E-value=2.3e-14  Score=116.88  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=93.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v  178 (274)
                      ..++.+|||+|||+|..+..+++   +..+|+++|+++.++....+.....   .++.++.+|+..+.    ..++||+|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D~I  150 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVDVL  150 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceEEE
Confidence            34568999999999999988887   4569999999998875554444332   46999999997632    24689999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++..+.    ++....+...+.+.|+|||++++............+.. ..++..+.++++||++++....
T Consensus       151 ~~d~a~----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e-~~~~~~~~L~~~gf~~~~~~~l  216 (232)
T 3id6_C          151 YVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKE-IYKTEVEKLENSNFETIQIINL  216 (232)
T ss_dssp             EECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSS-STTHHHHHHHHTTEEEEEEEEC
T ss_pred             EecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHH-HHHHHHHHHHHCCCEEEEEecc
Confidence            987554    23434455666779999999999865443222222222 2245667788889999887764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.60  E-value=5.2e-15  Score=126.11  Aligned_cols=139  Identities=14%  Similarity=0.105  Sum_probs=101.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhc---CCCCcceEEEEcccCCCC---CCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFTWC---PTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~---~~~~fD~v  178 (274)
                      .++.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|+++++.   ....++++++.+|+.+..   +.++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            34579999999999999999874  56999999999999999998742   112357999999998732   46789999


Q ss_pred             EecccccccChhHH--HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          179 FDYTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       179 ~~~~~~~~~~~~~~--~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      ++.......+...+  ..+++.+.++|+|||++++...+...      ......++.+.++++||..+.+.....
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~------~~~~~~~~~~~l~~~GF~~v~~~~~~v  242 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL------DLELIEKMSRFIRETGFASVQYALMHV  242 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT------CHHHHHHHHHHHHHHTCSEEEEEECCC
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc------chHHHHHHHHHHHhCCCCcEEEEEeec
Confidence            99765543322222  57899999999999999987532210      112467888999999999887765433

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.60  E-value=4.2e-15  Score=119.99  Aligned_cols=131  Identities=19%  Similarity=0.125  Sum_probs=93.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v~~  180 (274)
                      .++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.+.+.....   .++.++.+|+...    ...++||+|++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEEEE
Confidence            35679999999999999988873  369999999999877666655433   3688899998763    23478999998


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHH----HHHhcCCCcEEEEeecc
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYE----EVLQPMGFQAISIVDNK  250 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Gf~~~~~~~~~  250 (274)
                      ...    .+.....++.++.++|||||++++.......     ....+.+++.    +.++++ |++++.....
T Consensus       133 ~~~----~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~  196 (210)
T 1nt2_A          133 DIA----QKNQIEILKANAEFFLKEKGEVVIMVKARSI-----DSTAEPEEVFKSVLKEMEGD-FKIVKHGSLM  196 (210)
T ss_dssp             CCC----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-----CTTSCHHHHHHHHHHHHHTT-SEEEEEEECT
T ss_pred             ecc----ChhHHHHHHHHHHHHhCCCCEEEEEEecCCc-----cccCCHHHHHHHHHHHHHhh-cEEeeeecCC
Confidence            731    2234456689999999999999988533210     0112344442    337888 9998887753

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.60  E-value=5.8e-15  Score=128.74  Aligned_cols=131  Identities=15%  Similarity=0.189  Sum_probs=106.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +..+|||||||+|..+..+++  ++.+++++|+ +.+++.+++    .   .+++++.+|+++..+  .||+|++..+++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~---~~v~~~~~d~~~~~~--~~D~v~~~~vlh  262 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----N---ENLNFVGGDMFKSIP--SADAVLLKWVLH  262 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----C---SSEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----C---CCcEEEeCccCCCCC--CceEEEEccccc
Confidence            347999999999999999987  5679999999 788876653    1   359999999987433  499999999999


Q ss_pred             ccChhHHHHHHHHHHhcccC---CcEEEEEEccCCCCCCC------------------CCcccCHHHHHHHHhcCCCcEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKP---DGELITLMFPISDHVGG------------------PPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~---gG~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      +++++....+++++.++|+|   ||++++.++........                  .....+.+++.++++++||+++
T Consensus       263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  342 (358)
T 1zg3_A          263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSY  342 (358)
T ss_dssp             GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEE
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCee
Confidence            99877777999999999999   99999987654332211                  0112489999999999999999


Q ss_pred             EEee
Q 024008          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      ++..
T Consensus       343 ~~~~  346 (358)
T 1zg3_A          343 KITP  346 (358)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8876

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.60  E-value=3.4e-15  Score=124.90  Aligned_cols=137  Identities=20%  Similarity=0.248  Sum_probs=97.9

Q ss_pred             cccchhHhhhc---CCCCcc-CCCccHHHHH-HHhcCCCCCCeEEEEcCCcch----hHHHhhC--C----CCeEEEEeC
Q 024008           74 SSGGWEKCWEE---GLTPWD-IGQPAPIIVH-LHQSGALPKGRALVPGCGTGY----DVVAMAS--P----ERYVVGLEI  138 (274)
Q Consensus        74 ~~~~w~~~~~~---~~~~~~-~~~~~~~~~~-~~~~~~~~~~~vLDiG~G~G~----~~~~l~~--~----~~~v~~iD~  138 (274)
                      ....|...+..   +.+.|. .......+.. ++..  .++.+|+|+|||||.    .++.+++  .    +++|+|+|+
T Consensus        68 ~~~e~~~l~~~lt~~~t~FfRd~~~f~~l~~~llp~--~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDi  145 (274)
T 1af7_A           68 NSAEWQAFINALTTNLTAFFREAHHFPILAEHARRR--HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDI  145 (274)
T ss_dssp             TCTHHHHHHHHHCCCCCCTTTTTTHHHHHHHHHHHS--CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEES
T ss_pred             CHHHHHHHHHHHhhcCccccCChHHHHHHHHHccCC--CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEEC
Confidence            45566665554   233222 1222333333 3443  234699999999998    4444544  2    469999999


Q ss_pred             ChHHHHHHHHHhhc-----------------------CC-------CCcceEEEEcccCCC-CC-CCCeeEEEecccccc
Q 024008          139 SDIAIKKAEELSSS-----------------------LP-------NAKFVSFLKADFFTW-CP-TELFDLIFDYTFFCA  186 (274)
Q Consensus       139 s~~~~~~a~~~~~~-----------------------~~-------~~~~v~~~~~d~~~~-~~-~~~fD~v~~~~~~~~  186 (274)
                      |+.+++.|+++...                       .+       +..+|.|.++|+.+. .+ .++||+|+|.++++|
T Consensus       146 s~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliy  225 (274)
T 1af7_A          146 DTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIY  225 (274)
T ss_dssp             CHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGG
T ss_pred             CHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHh
Confidence            99999999987521                       00       013699999999883 33 478999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                      ++++....++.+++++|+|||++++.
T Consensus       226 f~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          226 FDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             SCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            99888899999999999999999874

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.60  E-value=6.3e-15  Score=126.91  Aligned_cols=134  Identities=14%  Similarity=0.034  Sum_probs=101.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCCC-----CCCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCP-----TELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~-----~~~fD~v~~~  181 (274)
                      ++.+|||+|||+|..+..+++.+++|+++|+|+.+++.|++++..+++.+ +++++.+|+.+..+     .++||+|++.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  232 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence            45799999999999999999988899999999999999999998877655 59999999987432     4689999997


Q ss_pred             ccccccC--------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH----hcCCCcEEEEeec
Q 024008          182 TFFCAIE--------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL----QPMGFQAISIVDN  249 (274)
Q Consensus       182 ~~~~~~~--------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Gf~~~~~~~~  249 (274)
                      .......        ......++..+.++|+|||.+++......        ..+.+.+.+++    ..+|+.+. ..+.
T Consensus       233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~--------~~~~~~~~~~l~~a~~~~g~~v~-~~e~  303 (332)
T 2igt_A          233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI--------RASFYSMHELMRETMRGAGGVVA-SGEL  303 (332)
T ss_dssp             CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT--------TSCHHHHHHHHHHHTTTSCSEEE-EEEE
T ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC--------CCCHHHHHHHHHHHHHHcCCeEE-EEEE
Confidence            6532211        13557889999999999999777653321        12444544444    47898876 4443


Q ss_pred             c
Q 024008          250 K  250 (274)
Q Consensus       250 ~  250 (274)
                      .
T Consensus       304 ~  304 (332)
T 2igt_A          304 V  304 (332)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.60  E-value=6.7e-15  Score=122.09  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=102.0

Q ss_pred             CeEEEEcCCc--chhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----C--CCCee-
Q 024008          110 GRALVPGCGT--GYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----P--TELFD-  176 (274)
Q Consensus       110 ~~vLDiG~G~--G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~--~~~fD-  176 (274)
                      .+|||+|||+  +.++..+++   ++.+|+++|.|+.+++.|+.++...+ ..+++|+++|+.++.     +  .+.|| 
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccCc
Confidence            6899999997  444444433   78899999999999999999987643 247999999998731     1  23455 


Q ss_pred             ----EEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCC------------CCCCC-cccCHHHHHHHHhc
Q 024008          177 ----LIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDH------------VGGPP-YKVSVSDYEEVLQP  238 (274)
Q Consensus       177 ----~v~~~~~~~~~~~~~-~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~  238 (274)
                          .|+++.++|++++.. ...++.++.+.|+|||+|++........            ..+.+ ...+.+++..+|. 
T Consensus       159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~-  237 (277)
T 3giw_A          159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFE-  237 (277)
T ss_dssp             TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTT-
T ss_pred             CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhC-
Confidence                688999999998754 5789999999999999999988765421            12223 3468999999995 


Q ss_pred             CCCcEEE
Q 024008          239 MGFQAIS  245 (274)
Q Consensus       239 ~Gf~~~~  245 (274)
                       ||++++
T Consensus       238 -Glelve  243 (277)
T 3giw_A          238 -GLELVE  243 (277)
T ss_dssp             -TSEECT
T ss_pred             -CCcccC
Confidence             998643

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.60  E-value=1.1e-15  Score=128.41  Aligned_cols=159  Identities=11%  Similarity=0.030  Sum_probs=109.5

Q ss_pred             HHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEE-EEcccCCC---
Q 024008           97 IIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSF-LKADFFTW---  169 (274)
Q Consensus        97 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~---  169 (274)
                      .+...+...  ..++.+|||+|||||.++..+++.++ +|+|+|+++.+++.+.++.      .++.. ...|+...   
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~  145 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPV  145 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGG
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchh
Confidence            344555443  23457999999999999999988775 9999999999998865432      22322 22343321   


Q ss_pred             -CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---C---CCC---C--cccCHHHHHHHHh
Q 024008          170 -CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---V---GGP---P--YKVSVSDYEEVLQ  237 (274)
Q Consensus       170 -~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---~---~~~---~--~~~~~~~~~~~~~  237 (274)
                       .+...||+|++..+|+++     ..++.++.++|+|||.+++...+....   .   .|.   +  +....+++.++++
T Consensus       146 ~l~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~  220 (291)
T 3hp7_A          146 DFTEGLPSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAV  220 (291)
T ss_dssp             GCTTCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHH
Confidence             233459999998888765     467899999999999999874322111   1   121   0  1246888999999


Q ss_pred             cCCCcEEEEeecccccCCccchhHHHHhhhh
Q 024008          238 PMGFQAISIVDNKLAIGPRKGREKLGRWKRS  268 (274)
Q Consensus       238 ~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (274)
                      ++||.+..+...  ++.+..++.++..|.+.
T Consensus       221 ~~Gf~v~~~~~s--pi~g~~gn~e~l~~~~~  249 (291)
T 3hp7_A          221 DYGFSVKGLDFS--PIQGGHGNIEFLAHLEK  249 (291)
T ss_dssp             HTTEEEEEEEEC--SSCCGGGCCCEEEEEEE
T ss_pred             HCCCEEEEEEEC--CCCCCCcCHHHHHHhhh
Confidence            999999888774  44455566666666554

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.59  E-value=4.7e-15  Score=117.02  Aligned_cols=107  Identities=17%  Similarity=0.089  Sum_probs=86.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----CCCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~fD~v~~  180 (274)
                      .++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.|+++....++.++++++.+|+.+..+     .++||+|++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            356899999999999999887755 59999999999999999999877665689999999977322     578999999


Q ss_pred             cccccccChhHHHHHHHHH--HhcccCCcEEEEEEccC
Q 024008          181 YTFFCAIEPEMRAAWAQKI--KDFLKPDGELITLMFPI  216 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l--~~~L~~gG~l~~~~~~~  216 (274)
                      +.+++...   ....+..+  .++|+|||.+++.....
T Consensus       123 ~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          123 DPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             CCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            88865322   23455666  88999999999876443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.59  E-value=3.1e-15  Score=121.41  Aligned_cols=105  Identities=17%  Similarity=0.161  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v~~~  181 (274)
                      ++.+|||||||+|..+..+++  ++..|+|+|+++.+++.|++++...++. ++.++.+|+.+.    .++++||.|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            567999999999999999987  5679999999999999999998877664 699999998773    567899999987


Q ss_pred             ccccccChhHH------HHHHHHHHhcccCCcEEEEEE
Q 024008          182 TFFCAIEPEMR------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~------~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .+..+......      ..+++.+.++|+|||.+++..
T Consensus       113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            44332211111      258999999999999999876

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.58  E-value=5.7e-15  Score=128.28  Aligned_cols=104  Identities=21%  Similarity=0.231  Sum_probs=88.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|+++....++.++++++.+|+.+. .+.++||+|++..+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            3568999999999999999998766 999999995 9999999999888878899999999984 556899999998765


Q ss_pred             ccc-ChhHHHHHHHHHHhcccCCcEEEE
Q 024008          185 CAI-EPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       185 ~~~-~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      +.+ .......++..+.++|+|||+++.
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            444 234567889999999999999873

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.58  E-value=5.2e-15  Score=115.92  Aligned_cols=107  Identities=19%  Similarity=0.114  Sum_probs=87.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.+ .+++++|+++.+++.|+++....++.++++++.+|+.+.  ...++||+|++..+
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence            456799999999999999888865 599999999999999999998887767899999999772  23467999999877


Q ss_pred             ccccChhHHHHHHHHHH--hcccCCcEEEEEEccC
Q 024008          184 FCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI  216 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~--~~L~~gG~l~~~~~~~  216 (274)
                      ++.   .....++..+.  ++|+|||.+++.....
T Consensus       110 ~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          110 YAK---ETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             SHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            642   34456667776  9999999999877544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.58  E-value=3.5e-15  Score=123.60  Aligned_cols=107  Identities=14%  Similarity=0.110  Sum_probs=86.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC----CCeEEEEeCChHHHHHHHHHhhcC---CCCcc----------------------
Q 024008          108 PKGRALVPGCGTGYDVVAMASP----ERYVVGLEISDIAIKKAEELSSSL---PNAKF----------------------  158 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~---~~~~~----------------------  158 (274)
                      ++.+|||+|||+|..+..+++.    +.+|+|+|+++.+++.|++++...   ++.++                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4579999999999999988764    569999999999999999887665   33222                      


Q ss_pred             ---eE-------------EEEcccCCCC------CCCCeeEEEecccccccCh-------hHHHHHHHHHHhcccCCcEE
Q 024008          159 ---VS-------------FLKADFFTWC------PTELFDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGEL  209 (274)
Q Consensus       159 ---v~-------------~~~~d~~~~~------~~~~fD~v~~~~~~~~~~~-------~~~~~~l~~l~~~L~~gG~l  209 (274)
                         ++             |..+|+.+..      ..++||+|+++.++.+...       +....++.++.++|+|||++
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               66             9999998854      3458999999988766532       55678999999999999999


Q ss_pred             EEEEc
Q 024008          210 ITLMF  214 (274)
Q Consensus       210 ~~~~~  214 (274)
                      ++...
T Consensus       211 ~~~~~  215 (250)
T 1o9g_A          211 AVTDR  215 (250)
T ss_dssp             EEEES
T ss_pred             EEeCc
Confidence            98553

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.58  E-value=3.5e-15  Score=115.98  Aligned_cols=103  Identities=18%  Similarity=0.125  Sum_probs=83.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----CCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~fD~v~~~~  182 (274)
                      ++.+|||+|||+|..+..+++.+.+++|+|+++.+++.|+++....+.  +++++.+|+.+..+     .++||+|+++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            568999999999999999999888899999999999999999887654  69999999876321     24799999998


Q ss_pred             cccccChhHHHHHHHHHH--hcccCCcEEEEEEccC
Q 024008          183 FFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI  216 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~--~~L~~gG~l~~~~~~~  216 (274)
                      +++ -..   ..+++.+.  ++|+|||.+++.....
T Consensus       119 ~~~-~~~---~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          119 PYA-MDL---AALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CTT-SCT---THHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCc-hhH---HHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            775 211   23445555  9999999999877544

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.58  E-value=5.7e-15  Score=119.66  Aligned_cols=142  Identities=12%  Similarity=0.051  Sum_probs=96.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHH----hhcCCCCcceEEEEcccCCCC-CCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEEL----SSSLPNAKFVSFLKADFFTWC-PTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~----~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v  178 (274)
                      ..++.+|||+|||+|..+..+++.  +.+|+|+|+++.+++.+.+.    ....+. ++++++++|+.+.. +.+. |.|
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v  102 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GEL  102 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEE
Confidence            345679999999999999999884  78999999999988864333    223333 47999999998843 3344 777


Q ss_pred             Eeccccc-----ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcc---cCHHHHHHHHhcCCCcEEE
Q 024008          179 FDYTFFC-----AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYK---VSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       179 ~~~~~~~-----~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~Gf~~~~  245 (274)
                      +....+.     +++  +...+++++.++|+|||.+++........     ....+..   ...+++.++++++||++..
T Consensus       103 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~  180 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD  180 (218)
T ss_dssp             EEESCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             EEEccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence            6333222     221  12678999999999999999854322111     1111111   1244578899999999999


Q ss_pred             Eeeccc
Q 024008          246 IVDNKL  251 (274)
Q Consensus       246 ~~~~~~  251 (274)
                      +.....
T Consensus       181 ~~~~~~  186 (218)
T 3mq2_A          181 CRYLEP  186 (218)
T ss_dssp             EEEECH
T ss_pred             eeccch
Confidence            887553

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.58  E-value=9.9e-15  Score=126.74  Aligned_cols=105  Identities=20%  Similarity=0.193  Sum_probs=90.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+. +|+|+|+++ +++.|++++..+++.++++++.+|+.+...+++||+|++..+++
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence            4668999999999999999988765 999999997 88999999988887778999999998855457899999998888


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                      ++..+.....+.++.++|+|||.+++.
T Consensus       128 ~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          128 MLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             TBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             cCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            776555566778899999999999853

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.58  E-value=8e-15  Score=123.31  Aligned_cols=125  Identities=19%  Similarity=0.115  Sum_probs=102.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|+++....++.++++++.+|+.+..+.++||+|++...
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~~  190 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP  190 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECCc
Confidence            45679999999999999988874   679999999999999999999887765689999999988766678999997421


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                             ....++..+.++|+|||.+++.....          ....++.+.++++||..+++.+
T Consensus       191 -------~~~~~l~~~~~~L~pgG~l~~~~~~~----------~~~~~~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          191 -------DPWNYIDKCWEALKGGGRFATVCPTT----------NQVQETLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             -------CGGGTHHHHHHHEEEEEEEEEEESSH----------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred             -------CHHHHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCceeEEEE
Confidence                   22467899999999999999987321          1356778888889998877665

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.57  E-value=1.7e-16  Score=130.71  Aligned_cols=136  Identities=18%  Similarity=0.196  Sum_probs=105.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|++++...++.++++++.+|+.+..+.++||+|+++.++++.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  157 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGP  157 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSG
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCc
Confidence            67899999999999999999989999999999999999999998887766899999999886667899999999999886


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--CCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDH--VGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      +..  ...+.++.++|+|||.+++........  ....+.....+++..++...|...+.
T Consensus       158 ~~~--~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~  215 (241)
T 3gdh_A          158 DYA--TAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIE  215 (241)
T ss_dssp             GGG--GSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEE
T ss_pred             chh--hhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEE
Confidence            432  235667899999999966543211100  00011224678888888887755444

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.57  E-value=9.2e-15  Score=121.35  Aligned_cols=124  Identities=19%  Similarity=0.155  Sum_probs=100.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFTW-CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~-~~~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|+++.... + .+++++..+|+.+. .+.++||+|++.
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCCCCcCEEEEC
Confidence            45679999999999999998874   679999999999999999998665 4 35799999999885 566789999973


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                           .+  ....+++++.++|+|||.+++.....          ....++.+.++++||..+.+.+
T Consensus       174 -----~~--~~~~~l~~~~~~L~~gG~l~~~~~~~----------~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          174 -----LM--EPWKVLEKAALALKPDRFLVAYLPNI----------TQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             -----SS--CGGGGHHHHHHHEEEEEEEEEEESCH----------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred             -----Cc--CHHHHHHHHHHhCCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCceEEEEE
Confidence                 22  22367899999999999999987322          1356778888999999877765

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.57  E-value=1.6e-14  Score=118.01  Aligned_cols=106  Identities=19%  Similarity=0.130  Sum_probs=88.3

Q ss_pred             HHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeE
Q 024008          100 HLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDL  177 (274)
Q Consensus       100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~  177 (274)
                      .++... ..++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++....+   +++++.+|+.. ....++||+
T Consensus        61 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~fD~  137 (231)
T 1vbf_A           61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEKPYDR  137 (231)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCCCccE
Confidence            344433 3456799999999999999999877899999999999999999987664   69999999987 334578999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      |++..+++++.        +.+.++|+|||++++.....
T Consensus       138 v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          138 VVVWATAPTLL--------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             EEESSBBSSCC--------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH--------HHHHHHcCCCcEEEEEEcCC
Confidence            99999999885        35888999999999987543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.57  E-value=6.6e-15  Score=119.69  Aligned_cols=127  Identities=15%  Similarity=0.161  Sum_probs=95.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC----CCCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP----TELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~----~~~fD  176 (274)
                      .++.+|||+|||+|..+..+++   ++.+|+++|+++.+++.|++++...++.++++++.+|+.+.   ..    .++||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            3568999999999999999988   37899999999999999999998887777899999998652   11    16899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEEEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAISI  246 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-f~~~~~  246 (274)
                      +|++....++..  ....++..+ ++|+|||++++.+....          ...++.+.+.... |....+
T Consensus       137 ~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~~~----------~~~~~~~~l~~~~~~~~~~~  194 (221)
T 3u81_A          137 MVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVIVP----------GTPDFLAYVRGSSSFECTHY  194 (221)
T ss_dssp             EEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCCCC----------CCHHHHHHHHHCTTEEEEEE
T ss_pred             EEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCCCc----------chHHHHHHHhhCCCceEEEc
Confidence            999887666542  233556666 99999999988553211          2245555665544 554444

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.57  E-value=1.1e-14  Score=127.76  Aligned_cols=106  Identities=17%  Similarity=0.126  Sum_probs=91.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.|. +|+|+|++ .+++.|++++..+++.++++++.+|+.+...+++||+|++..+.+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY  140 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence            4568999999999999999999887 99999999 999999999998888888999999998855458999999977655


Q ss_pred             ccCh-hHHHHHHHHHHhcccCCcEEEEEE
Q 024008          186 AIEP-EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       186 ~~~~-~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .+.. .....++..+.++|+|||+++...
T Consensus       141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             cccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            5532 456788999999999999997643

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.57  E-value=5.2e-14  Score=113.02  Aligned_cols=130  Identities=13%  Similarity=0.074  Sum_probs=101.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+. +++|+|+++.+++.++++....+.  +++++.+|+.+..  ++||+|+++.+++
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~~~p~~  123 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIMNPPFG  123 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEECCCCS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEEcCCCc
Confidence            4568999999999999999988765 799999999999999999987764  6999999998753  5899999999888


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      .........+++.+.+.+  |+ +++.....         ..+.+.+.+.+++.||++..+......
T Consensus       124 ~~~~~~~~~~l~~~~~~l--~~-~~~~~~~~---------~~~~~~~~~~l~~~g~~~~~~~~~~~~  178 (207)
T 1wy7_A          124 SQRKHADRPFLLKAFEIS--DV-VYSIHLAK---------PEVRRFIEKFSWEHGFVVTHRLTTKIE  178 (207)
T ss_dssp             SSSTTTTHHHHHHHHHHC--SE-EEEEEECC---------HHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cccCCchHHHHHHHHHhc--Cc-EEEEEeCC---------cCCHHHHHHHHHHCCCeEEEEEEEecC
Confidence            765444456788888888  44 44433111         114667888899999998877765443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.57  E-value=9.5e-15  Score=127.16  Aligned_cols=104  Identities=22%  Similarity=0.136  Sum_probs=89.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||||||+|.+++.+++.|+ +|++||.++ +++.|++++..+++.++|+++.+|+.+...+++||+|++-..-.
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~  160 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY  160 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence            3578999999999999999999887 899999986 88999999999999999999999999876668999999865443


Q ss_pred             cc-ChhHHHHHHHHHHhcccCCcEEEE
Q 024008          186 AI-EPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       186 ~~-~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      .+ ....+..++....++|+|||.++-
T Consensus       161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          161 GLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccchhhhHHHHHHhhCCCCceECC
Confidence            33 334677888999999999999873

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.57  E-value=2.2e-14  Score=119.99  Aligned_cols=133  Identities=12%  Similarity=0.030  Sum_probs=106.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.+++.+++.| .+|+++|++|.+++.+++|+..+++.++++++.+|..+..+.+.||.|+++...
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~  202 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence            4567899999999999999988865 599999999999999999999999989999999999988778899999976543


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ..      ..++....++|++||++.+..+.......    .-..+.+.++++..|+.+..+..
T Consensus       203 ~~------~~~l~~a~~~lk~gG~ih~~~~~~e~~~~----~~~~e~i~~~~~~~g~~v~~~~~  256 (278)
T 3k6r_A          203 RT------HEFIPKALSIAKDGAIIHYHNTVPEKLMP----REPFETFKRITKEYGYDVEKLNE  256 (278)
T ss_dssp             SG------GGGHHHHHHHEEEEEEEEEEEEEEGGGTT----TTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             cH------HHHHHHHHHHcCCCCEEEEEeeecccccc----hhHHHHHHHHHHHcCCcEEEEEE
Confidence            32      24567788999999998876654432211    12457788889999998765543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.56  E-value=1.7e-14  Score=124.80  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=87.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|++++..+++.++++++.+|+.+. .+.++||+|++..+.
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence            4567999999999999999998776 999999997 9999999998888777899999999884 445789999998743


Q ss_pred             ccc-ChhHHHHHHHHHHhcccCCcEEE
Q 024008          185 CAI-EPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       185 ~~~-~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      ..+ .......++..+.++|+|||.++
T Consensus       142 ~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          142 YFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            332 23466789999999999999987

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.56  E-value=9.4e-15  Score=117.20  Aligned_cols=105  Identities=10%  Similarity=-0.003  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~  184 (274)
                      ++.+|||+|||+|..+..++..+. +|+++|+++.+++.|+++....+. ++++++.+|+.+  ....++||+|++..++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            567999999999999998777664 999999999999999999988776 579999999877  2345689999998775


Q ss_pred             cccChhHHHHHHHHHHh--cccCCcEEEEEEccC
Q 024008          185 CAIEPEMRAAWAQKIKD--FLKPDGELITLMFPI  216 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~--~L~~gG~l~~~~~~~  216 (274)
                      +.   .....+++.+.+  +|+|||++++.....
T Consensus       133 ~~---~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          133 RR---GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             ST---TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             CC---CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            52   234566777765  599999999877544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.56  E-value=2.6e-14  Score=118.34  Aligned_cols=103  Identities=18%  Similarity=0.126  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--C--CCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--C--PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~--~~~~fD~v~  179 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++.+|+.+.  .  ..++||+|+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            35689999999999999999984   7899999999999999999999888877899999998762  1  234899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +...     ......+++.+.++|+|||++++...
T Consensus       142 ~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          142 IDAD-----KPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             ECSC-----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             ECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            7553     23446789999999999999988653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.56  E-value=1e-14  Score=118.62  Aligned_cols=102  Identities=20%  Similarity=0.072  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC------CCCeeE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP------TELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~fD~  177 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++.+|+.+..+      .++||+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            35689999999999999999984   789999999999999999999888887789999999976322      167999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      |++....     .....+++.+.++|+|||++++..
T Consensus       137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeC
Confidence            9976552     344578899999999999888754

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.55  E-value=7.1e-15  Score=119.64  Aligned_cols=103  Identities=13%  Similarity=0.113  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---C----CCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---T----ELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~----~~fD  176 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++.+|+.+..+   .    ++||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            35679999999999999999984   789999999999999999999888887789999999866321   1    7899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|++...     ......+++.+.++|+|||++++.+.
T Consensus       143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9996553     23456788999999999999998654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.55  E-value=1e-14  Score=118.66  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=84.2

Q ss_pred             CeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCC---CCCCCeeEEEecc
Q 024008          110 GRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTW---CPTELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~---~~~~~fD~v~~~~  182 (274)
                      .+|||+|||+|..+..+++   ++.+|+++|+++.+++.|++++...++. ++++++.+|+.+.   .+.++||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            4999999999999999987   3789999999999999999999998887 7899999998763   2257899999765


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..     .....+++.+.++|+|||++++.+
T Consensus       138 ~~-----~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          138 SP-----MDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             CT-----TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             cH-----HHHHHHHHHHHHHcCCCcEEEEeC
Confidence            43     234568999999999999999843

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.54  E-value=2.9e-13  Score=112.24  Aligned_cols=143  Identities=15%  Similarity=0.125  Sum_probs=94.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCC---CCCeeEE
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCP---TELFDLI  178 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~---~~~fD~v  178 (274)
                      ++.+|||+|||+|..+..++.  ++.+|+|+|+++.+++.|++++...++.++++++.+|+.+    ..+   +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            457999999999999988877  4789999999999999999999888777779999999654    233   2589999


Q ss_pred             EecccccccCh-------------hHHHHHHHHHHhcccCCcEEEEEEccCC-----CCCCC-----CCcccCHHHHHHH
Q 024008          179 FDYTFFCAIEP-------------EMRAAWAQKIKDFLKPDGELITLMFPIS-----DHVGG-----PPYKVSVSDYEEV  235 (274)
Q Consensus       179 ~~~~~~~~~~~-------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~  235 (274)
                      +++.+++....             .....++..+.++|+|||.+.+...-..     ....+     .....+.+++.++
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  224 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE  224 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHH
Confidence            99977765430             0112344556666666665443210000     00000     0011134789999


Q ss_pred             HhcCCCcEEEEeecc
Q 024008          236 LQPMGFQAISIVDNK  250 (274)
Q Consensus       236 ~~~~Gf~~~~~~~~~  250 (274)
                      ++++||..+.+....
T Consensus       225 l~~~Gf~~v~~~~~~  239 (254)
T 2h00_A          225 LRIQGVPKVTYTEFC  239 (254)
T ss_dssp             HHHTTCSEEEEEEEE
T ss_pred             HHHcCCCceEEEEEe
Confidence            999999988876643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=3e-14  Score=115.12  Aligned_cols=100  Identities=23%  Similarity=0.162  Sum_probs=84.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++.+   .+|+++|+++.+++.++++....+. .++++..+|+....+ .++||+|++..
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~v~~~~  154 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGTLGYEPLAPYDRIYTTA  154 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCCCCCeeEEEECC
Confidence            456799999999999999998843   7999999999999999999876554 359999999866433 57899999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      ++++++        +++.++|+|||++++....
T Consensus       155 ~~~~~~--------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          155 AGPKIP--------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             BBSSCC--------HHHHHTEEEEEEEEEEESS
T ss_pred             chHHHH--------HHHHHHcCCCcEEEEEECC
Confidence            999875        4789999999999998743

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.54  E-value=2.2e-14  Score=129.33  Aligned_cols=104  Identities=21%  Similarity=0.216  Sum_probs=89.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+ .+|+|+|+++ +++.|++++..+++.++++++.+|+.+...+++||+|++..+++
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  235 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchH
Confidence            356899999999999999998865 4999999998 99999999988888788999999998854457899999988877


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      ++..+.....+..+.++|+|||++++
T Consensus       236 ~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          236 MLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             HHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             hcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            76655556677789999999999985

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.53  E-value=1e-13  Score=121.43  Aligned_cols=129  Identities=17%  Similarity=0.211  Sum_probs=102.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..++..+.  +++|+|+++.+++.|++++...++.+++++.++|+.+. .+.++||+|+++.
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            34568999999999999999998766  99999999999999999999988877899999999984 4457899999988


Q ss_pred             cccccC------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          183 FFCAIE------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       183 ~~~~~~------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ++....      .+....+++.+.++|  +|.+++...             +.+.+.+.+...||+.......
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------~~~~~~~~~~~~G~~~~~~~~~  352 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------EKKAIEEAIAENGFEIIHHRVI  352 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------CHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------CHHHHHHHHHHcCCEEEEEEEE
Confidence            866421      122367888899988  444444431             5788889999999998776543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.53  E-value=3.1e-14  Score=122.59  Aligned_cols=103  Identities=20%  Similarity=0.216  Sum_probs=87.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++..+++.++++++.+|+.+. .+.++||+|++..+.
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            3567999999999999999998776 99999999 58999999998888878899999999884 445789999998665


Q ss_pred             ccc-ChhHHHHHHHHHHhcccCCcEEE
Q 024008          185 CAI-EPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       185 ~~~-~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      +.+ .......++..+.++|+|||+++
T Consensus       116 ~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            544 23456678899999999999987

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.53  E-value=2.9e-14  Score=123.58  Aligned_cols=115  Identities=19%  Similarity=0.180  Sum_probs=92.8

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024008           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  173 (274)
                      ....++... ..++.+|||+|||+|..+..+++.  ..+++++|+++.+++.++++....+..  ++++.+|+.... .+
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~-~~  260 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV-KG  260 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC-CS
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc-cC
Confidence            334444443 334579999999999999999873  469999999999999999999877643  677899987644 67


Q ss_pred             CeeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          174 LFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~fD~v~~~~~~~~~---~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +||+|+++.++++.   +.+....++.++.++|+|||.+++...
T Consensus       261 ~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          261 RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             CEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            89999999998862   335668899999999999999998764

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.53  E-value=7.1e-14  Score=116.81  Aligned_cols=141  Identities=22%  Similarity=0.186  Sum_probs=101.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.  +.+++++|+++.+++.|+++.      .++.+..+|+.. ..++++||+|++..+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~  157 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA  157 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence            45689999999999999999884  789999999999999999886      458899999987 345678999998665


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------CCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCcc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRK  257 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~  257 (274)
                      ..         .+.++.++|+|||.+++.........      .........    ..+..+||+++........... +
T Consensus       158 ~~---------~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~gf~~~~~~~~~~~~~~-~  223 (269)
T 1p91_A          158 PC---------KAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAP----HAEQLEGFTLQQSAELCYPMRL-R  223 (269)
T ss_dssp             CC---------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTCSSCCCCCC----CCCCCTTEEEEEEEEEEEEEEE-E
T ss_pred             hh---------hHHHHHHhcCCCcEEEEEEcCHHHHHHHHHHhhcccccccc----hhhHhcCCcEEEEEEEEEEEEc-C
Confidence            32         36889999999999999876543210      000000000    3456789999888776655443 1


Q ss_pred             chhHHHHhhhh
Q 024008          258 GREKLGRWKRS  268 (274)
Q Consensus       258 ~~~~~~~~~~~  268 (274)
                       .+.+..+.++
T Consensus       224 -~~~~~~~~~~  233 (269)
T 1p91_A          224 -GDEAVALLQM  233 (269)
T ss_dssp             -HHHHHHHHHT
T ss_pred             -HHHHHHHhcc
Confidence             2334445444

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.53  E-value=6.5e-14  Score=114.93  Aligned_cols=126  Identities=13%  Similarity=0.095  Sum_probs=90.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhc------CCCCcceEEEEcccCC-C---CCCCCe
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS------LPNAKFVSFLKADFFT-W---CPTELF  175 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~-~---~~~~~f  175 (274)
                      ++.+|||||||+|..+..+++  ++..++|+|+++.+++.|++++..      .+. .++.++.+|+.. .   .+.++|
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcCe
Confidence            446899999999999999987  467999999999999999887642      222 579999999986 2   457899


Q ss_pred             eEEEecccccccChh--H----HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEE
Q 024008          176 DLIFDYTFFCAIEPE--M----RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAI  244 (274)
Q Consensus       176 D~v~~~~~~~~~~~~--~----~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-f~~~  244 (274)
                      |.|++...-.+....  .    ...+++.+.++|+|||.+++.....          .-...+.+.+..+| |..+
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~----------~~~~~~~~~l~~~~~f~~~  190 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL----------ELHDWMCTHFEEHPLFERV  190 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH----------HHHHHHHHHHHTSTTEEEE
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCcccc
Confidence            999865432211000  0    1368999999999999999876211          12345666777776 5443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.53  E-value=3.1e-14  Score=117.78  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--------CCCe
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~f  175 (274)
                      .++.+|||+|||+|..+..+++  + +.+++++|+++.+++.|++++...++.++++++.+|..+..+        .++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            4567999999999999999887  3 789999999999999999999888877789999999876311        5789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      |+|++....     .....+++.+.++|+|||++++..
T Consensus       158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEec
Confidence            999976442     234678899999999999998754

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.53  E-value=4.4e-14  Score=115.28  Aligned_cols=139  Identities=11%  Similarity=0.022  Sum_probs=107.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|-++..++.  +..+|+++|+++.+++.+++++..++.  +.++...|.....+.++||+++++-++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p~~~~DvaL~lkti  208 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRLDEPADVTLLLKTL  208 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCCCCCcchHHHHHHH
Confidence            3467999999999999988877  566999999999999999999988875  388999999987788999999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ++++.......+ ++.+.|+++|+++......-..........-...|.+.+.+.|+.+.+++-
T Consensus       209 ~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~  271 (281)
T 3lcv_B          209 PCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEI  271 (281)
T ss_dssp             HHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeee
Confidence            999755444555 899999999998876532211111111223467888888888996655543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.53  E-value=1.5e-13  Score=109.75  Aligned_cols=123  Identities=14%  Similarity=0.070  Sum_probs=92.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+. +++|+|+++.+++.|+++..      +++++.+|+.+..  ++||+|+++.+++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p~~  121 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPPFG  121 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCCC-
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCCch
Confidence            3567999999999999999988765 79999999999999999974      5899999998743  7899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      ++.......+++++.+.+   |.+++....           .+...+.+.++.+| .+..+......
T Consensus       122 ~~~~~~~~~~l~~~~~~~---g~~~~~~~~-----------~~~~~~~~~~~~~g-~~~~~~~~~~~  173 (200)
T 1ne2_A          122 SVVKHSDRAFIDKAFETS---MWIYSIGNA-----------KARDFLRREFSARG-DVFREEKVYIT  173 (200)
T ss_dssp             ------CHHHHHHHHHHE---EEEEEEEEG-----------GGHHHHHHHHHHHE-EEEEEEEEEEE
T ss_pred             hccCchhHHHHHHHHHhc---CcEEEEEcC-----------chHHHHHHHHHHCC-CEEEEEEEecC
Confidence            886544457888888888   444444411           14677888899989 66666554433

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.53  E-value=1e-13  Score=120.66  Aligned_cols=127  Identities=20%  Similarity=0.154  Sum_probs=102.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..++.   +..+++|+|+++.+++.|++++...++. +++|.++|+.+. .+.+.||+|+++.
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~~~~D~Ii~np  280 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFFPEVDRILANP  280 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccccCCCCEEEECC
Confidence            4557999999999999999988   3489999999999999999999988876 899999999884 4456789999998


Q ss_pred             cccccCh------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          183 FFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ++.....      .....+++.+.++|+|||.+++...             +.+.+.++++ .||+......
T Consensus       281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-------------~~~~~~~~~~-~g~~~~~~~~  338 (354)
T 3tma_A          281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL-------------RPALLKRALP-PGFALRHARV  338 (354)
T ss_dssp             CSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES-------------CHHHHHHHCC-TTEEEEEEEE
T ss_pred             CCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC-------------CHHHHHHHhh-cCcEEEEEEE
Confidence            8764211      1236788999999999999998862             3455666666 8988766544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.53  E-value=6.4e-15  Score=121.50  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=87.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-------CCCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD  176 (274)
                      .++.+|||+|||+|..+..+++   .+.+|+++|+++.+++.|++++...++.++++++.+|+.+..+       .++||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            3567999999999999999987   3679999999999999999999988887889999999976322       47899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|++...     ......+++.+.++|+|||++++.+.
T Consensus       139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence            9997654     23456789999999999999998653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.52  E-value=5.4e-14  Score=118.65  Aligned_cols=120  Identities=14%  Similarity=0.159  Sum_probs=93.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe---eEEEeccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF---DLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f---D~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++....++.++++|+.+|+.+..+ ++|   |+|+++..
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-EKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-GGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-cccCCCCEEEEcCC
Confidence            4579999999999999999874 889999999999999999999988877779999999987443 478   99999865


Q ss_pred             cccc-----------ChhH------HHHHHHHHH-hcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC
Q 024008          184 FCAI-----------EPEM------RAAWAQKIK-DFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       184 ~~~~-----------~~~~------~~~~l~~l~-~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                      +...           +...      ...+++++. +.|+|||.+++.. +..          ..+++.++++..
T Consensus       202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~-~~~----------q~~~v~~~~~~~  264 (284)
T 1nv8_A          202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI-GED----------QVEELKKIVSDT  264 (284)
T ss_dssp             CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC-CTT----------CHHHHTTTSTTC
T ss_pred             CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE-Cch----------HHHHHHHHHHhC
Confidence            4421           1100      116789999 9999999999754 111          355677777664

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.52  E-value=3.6e-14  Score=123.49  Aligned_cols=117  Identities=16%  Similarity=0.117  Sum_probs=88.9

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhh-------cCCC-CcceEEEE
Q 024008           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSS-------SLPN-AKFVSFLK  163 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~-------~~~~-~~~v~~~~  163 (274)
                      ...+..++.... .++.+|||+|||+|..++.++. .+. +++|||+++.+++.|+++..       ..++ ..+++|++
T Consensus       159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~  238 (438)
T 3uwp_A          159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  238 (438)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            344555665543 4568999999999999998886 555 59999999999999987642       2333 25799999


Q ss_pred             cccCCCCC-C--CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          164 ADFFTWCP-T--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       164 ~d~~~~~~-~--~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+.+... .  ..||+|+++.++.  . ++....+.++.+.|+|||+|++.+.
T Consensus       239 GD~~~lp~~d~~~~aDVVf~Nn~~F--~-pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          239 GDFLSEEWRERIANTSVIFVNNFAF--G-PEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             CCTTSHHHHHHHHTCSEEEECCTTC--C-HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             CcccCCccccccCCccEEEEccccc--C-chHHHHHHHHHHcCCCCcEEEEeec
Confidence            99988322 1  4799999987753  3 4556677899999999999998654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.51  E-value=7.5e-14  Score=115.13  Aligned_cols=124  Identities=19%  Similarity=0.186  Sum_probs=99.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.|+++....++.+++++..+|+.+.. +.++||+|++...  
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~--  167 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR--  167 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS--
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc--
Confidence            4567999999999999999888778999999999999999999887776668999999998865 6678999997422  


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                           ....+++.+.++|+|||.+++.....          ....++.+.+++. |..+.+.+
T Consensus       168 -----~~~~~l~~~~~~L~~gG~l~~~~~~~----------~~~~~~~~~l~~~-f~~~~~~~  214 (248)
T 2yvl_A          168 -----EPWHYLEKVHKSLMEGAPVGFLLPTA----------NQVIKLLESIENY-FGNLEVVE  214 (248)
T ss_dssp             -----CGGGGHHHHHHHBCTTCEEEEEESSH----------HHHHHHHHHSTTT-EEEEEEEE
T ss_pred             -----CHHHHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHhh-CCcceEEE
Confidence                 22457899999999999999987322          1345677777776 77665554

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.51  E-value=1.4e-13  Score=121.02  Aligned_cols=141  Identities=9%  Similarity=-0.057  Sum_probs=104.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCCC-----CCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCP-----TELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~-----~~~fD~v~  179 (274)
                      .++.+|||+|||+|..+..+++.++ +|+++|+++.+++.|++++..+++.+ +++|+.+|+.+..+     ..+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            4568999999999999999998776 89999999999999999999888765 89999999977321     35899999


Q ss_pred             eccccc-----ccCh--hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          180 DYTFFC-----AIEP--EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       180 ~~~~~~-----~~~~--~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      +.....     ....  .....++..+.++|+|||++++.+.+....     ...-.+.+.+.+..+|..++........
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-----~~~~~~~i~~~~~~~g~~~~~~~~~~~D  365 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-----VSQFKKQIEKGFGKQKHTYLDLQQLPSD  365 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-----HHHHHHHHHHHHTTCCCEEEEEECCCTT
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-----HHHHHHHHHHHHHHcCCcEEEeCCCCCC
Confidence            976552     2221  334567888899999999999987544211     0011344556677888885554444433

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.51  E-value=4.9e-14  Score=115.40  Aligned_cols=102  Identities=21%  Similarity=0.282  Sum_probs=86.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~  180 (274)
                      .++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.|++++...+..++++++.+|+....+    .++||+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            3567999999999999999987  3789999999999999999999888776789999999987321    478999998


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .....     ....+++.+.++|+|||++++.+
T Consensus       133 ~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          133 DAAKG-----QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EGGGS-----CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CCCHH-----HHHHHHHHHHHHcCCCeEEEEEc
Confidence            76643     33578899999999999999864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.51  E-value=6.4e-14  Score=120.12  Aligned_cols=110  Identities=22%  Similarity=0.150  Sum_probs=89.2

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCC
Q 024008           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPT  172 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~  172 (274)
                      ...++... ..++.+|||+|||+|..+..+++.   ..+|+++|+++++++.|+++....+.. +++++.+|+.+ ....
T Consensus        64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~~  142 (317)
T 1dl5_A           64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEF  142 (317)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred             HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccccC
Confidence            33444443 345689999999999999999883   346999999999999999999877764 49999999987 3345


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      ++||+|++..+++++.        +.+.++|+|||++++...+.
T Consensus       143 ~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             CCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCBG
T ss_pred             CCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECCC
Confidence            7899999999999885        46788999999999976443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.50  E-value=1.1e-13  Score=113.39  Aligned_cols=101  Identities=19%  Similarity=0.118  Sum_probs=84.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~  183 (274)
                      ..++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.|+++....+.. ++++..+|+....+ ..+||+|++..+
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~Ii~~~~  167 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPKAPYDVIIVTAG  167 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCCCCCccEEEECCc
Confidence            3456799999999999999998854 89999999999999999998877654 49999999844333 345999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      ++++.        +.+.+.|+|||++++....
T Consensus       168 ~~~~~--------~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          168 APKIP--------EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             BSSCC--------HHHHHTEEEEEEEEEEECS
T ss_pred             HHHHH--------HHHHHhcCCCcEEEEEEec
Confidence            88875        3678999999999998743

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.50  E-value=5e-14  Score=113.47  Aligned_cols=100  Identities=17%  Similarity=0.130  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~  182 (274)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++....++.++++++.+|..+.  ..++ ||+|++..
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            5679999999999999999873   7799999999999999999988776667899999999762  2345 99999764


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..     .....+++.+.++|+|||++++..
T Consensus       135 ~~-----~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          135 DV-----FNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             TT-----SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             Ch-----hhhHHHHHHHHHhcCCCeEEEEEC
Confidence            32     234678999999999999998754

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.49  E-value=4.3e-13  Score=117.46  Aligned_cols=129  Identities=15%  Similarity=0.096  Sum_probs=101.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~  181 (274)
                      .++.+|||+| |+|..+..++..+  .+|+++|+++.+++.|++++...++. +++++.+|+.+..+   .++||+|+++
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence            4568999999 9999999998744  59999999999999999999887765 79999999988332   3589999999


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEE-EEEEccCCCCCCCCCcccCH---HHHHHHHh-cCCCcEEEEeec
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGEL-ITLMFPISDHVGGPPYKVSV---SDYEEVLQ-PMGFQAISIVDN  249 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~Gf~~~~~~~~  249 (274)
                      .+++..   ....++.++.++|+|||.+ ++......         .+.   .++.+.+. ..||.+..+...
T Consensus       249 ~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~g~~~~~~~~~  309 (373)
T 2qm3_A          249 PPETLE---AIRAFVGRGIATLKGPRCAGYFGITRRE---------SSLDKWREIQKLLLNEFNVVITDIIRN  309 (373)
T ss_dssp             CCSSHH---HHHHHHHHHHHTBCSTTCEEEEEECTTT---------CCHHHHHHHHHHHHHTSCCEEEEEEEE
T ss_pred             CCCchH---HHHHHHHHHHHHcccCCeEEEEEEecCc---------CCHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            876643   2478899999999999954 44443210         134   67778888 889988766543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.49  E-value=2.8e-13  Score=109.58  Aligned_cols=135  Identities=14%  Similarity=-0.014  Sum_probs=97.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+. +..+|+++|+++.+++.++++....+  .+..+..+|.....++++||+|++.-++++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            456899999999999999888 77899999999999999999987776  568999999998777789999999999898


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ++.......+ ++.+.|+++|+++...-..-..........-...|.+.+.+.++.+.+
T Consensus       181 LE~q~~~~~~-~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~  238 (253)
T 3frh_A          181 LEREQAGSAM-ALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDK  238 (253)
T ss_dssp             HHHHSTTHHH-HHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEE
T ss_pred             hhhhchhhHH-HHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhh
Confidence            8654444444 888899999887765511111111111112355666666554444433

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.49  E-value=5.1e-14  Score=115.74  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=85.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--------CCCCe
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------PTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~f  175 (274)
                      .++.+|||+|||+|..+..+++  + +.+++++|+++.+++.|++++...++.++++++.+|..+..        +.++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            4567999999999999999987  3 78999999999999999999988888778999999987621        15789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      |+|++...     ......+++.+.++|+|||++++..
T Consensus       149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            99997533     2345678999999999999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.49  E-value=1e-13  Score=113.99  Aligned_cols=102  Identities=20%  Similarity=0.122  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC------------
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP------------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------  171 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.+..+            
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            35679999999999999999873   679999999999999999999887776679999999865211            


Q ss_pred             -----C-CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          172 -----T-ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 -----~-~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                           . ++||+|++....     .....+++.+.++|+|||++++..
T Consensus       139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence                 2 789999987543     334578899999999999999865

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.49  E-value=9.8e-15  Score=119.51  Aligned_cols=147  Identities=13%  Similarity=0.079  Sum_probs=95.7

Q ss_pred             HHHHHHhcCC--CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC--CcceEEEE-cccCCCC
Q 024008           97 IIVHLHQSGA--LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN--AKFVSFLK-ADFFTWC  170 (274)
Q Consensus        97 ~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~-~d~~~~~  170 (274)
                      .+...+....  .++.+|||+|||+|.++..+++.++ +|+|+|+++.+++.++++......  ..++.+.. .|+..  
T Consensus        24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--  101 (232)
T 3opn_A           24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--  101 (232)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--
T ss_pred             HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--
Confidence            3455555442  3456999999999999999998875 999999999999998876532110  01122222 22211  


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------CCCC-----CcccCHHHHHHHHhcC
Q 024008          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------VGGP-----PYKVSVSDYEEVLQPM  239 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~  239 (274)
                        ..||.+.+..++..+     ..++.++.++|+|||.+++...+....      ..+.     .+..+.+++.++++++
T Consensus       102 --~~~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~a  174 (232)
T 3opn_A          102 --GRPSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQL  174 (232)
T ss_dssp             --CCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHC
Confidence              124555554455444     467899999999999999864211100      0111     1124788999999999


Q ss_pred             CCcEEEEeecccc
Q 024008          240 GFQAISIVDNKLA  252 (274)
Q Consensus       240 Gf~~~~~~~~~~~  252 (274)
                      ||.++.+...+..
T Consensus       175 Gf~v~~~~~~pi~  187 (232)
T 3opn_A          175 GFSVKGLTFSPIK  187 (232)
T ss_dssp             TEEEEEEEECSSC
T ss_pred             CCEEEEEEEccCC
Confidence            9999988875543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.48  E-value=7e-14  Score=109.44  Aligned_cols=119  Identities=14%  Similarity=0.028  Sum_probs=92.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C---CCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C---PTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~---~~~~fD~v~~~  181 (274)
                      ..++.+|||+|||.              +++|+++.+++.|+++...     ++++..+|+.+. .   ++++||+|++.
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V~~~   70 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDIILSG   70 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEEEEC
Confidence            34568999999986              2389999999999998643     389999999873 3   57889999999


Q ss_pred             cccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          182 TFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .+++++ ++  ...++++++++|||||++++....... .....+..+.+++.++++++|| +. +.+
T Consensus        71 ~~l~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf-i~-~~~  133 (176)
T 2ld4_A           71 LVPGSTTLH--SAEILAEIARILRPGGCLFLKEPVETA-VDNNSKVKTASKLCSALTLSGL-VE-VKE  133 (176)
T ss_dssp             CSTTCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESS-SCSSSSSCCHHHHHHHHHHTTC-EE-EEE
T ss_pred             ChhhhcccC--HHHHHHHHHHHCCCCEEEEEEcccccc-cccccccCCHHHHHHHHHHCCC-cE-eec
Confidence            999998 43  367899999999999999985432211 1113345578999999999999 44 444

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.48  E-value=3.6e-13  Score=115.29  Aligned_cols=134  Identities=12%  Similarity=0.085  Sum_probs=101.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~  181 (274)
                      ..++.+|||+|||+|..+..+++   .+.+|+++|+++.+++.+++++...+.. +++++.+|+.... ..++||+|++.
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEEEe
Confidence            45568999999999999999886   3479999999999999999999877653 6999999998743 35689999985


Q ss_pred             cc------ccccC-------hh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024008          182 TF------FCAIE-------PE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       182 ~~------~~~~~-------~~-------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf  241 (274)
                      ..      +...+       ..       ....+++++.++|+|||++++.......       .-....+.++++..||
T Consensus       195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~-------~Ene~~v~~~l~~~~~  267 (315)
T 1ixk_A          195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP-------EENEFVIQWALDNFDV  267 (315)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG-------GGTHHHHHHHHHHSSE
T ss_pred             CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh-------HHhHHHHHHHHhcCCC
Confidence            43      22111       11       1257899999999999999987754421       1145567788899998


Q ss_pred             cEEEEe
Q 024008          242 QAISIV  247 (274)
Q Consensus       242 ~~~~~~  247 (274)
                      +.+.+.
T Consensus       268 ~~~~~~  273 (315)
T 1ixk_A          268 ELLPLK  273 (315)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            877654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.48  E-value=1.1e-13  Score=113.38  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCC--CCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPT--ELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~--~~fD  176 (274)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|+++....++.++++++.+|+.+.     ...  ++||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            35679999999999999999883   6799999999999999999988777767899999997652     112  7899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|++...     ......+++.+.++|+|||++++.+.
T Consensus       151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            9997654     23456789999999999999998653

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.47  E-value=2.5e-13  Score=117.31  Aligned_cols=123  Identities=9%  Similarity=-0.044  Sum_probs=98.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++.. ++.+.+|+++|+++.+++.|++++..+++.++++++.+|+.+..  ++||+|++......
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~~  270 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKFA  270 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTTG
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHhH
Confidence            4568999999999999999 88666999999999999999999998887678999999998865  88999998644322


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-CCcEEEEeec
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-GFQAISIVDN  249 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gf~~~~~~~~  249 (274)
                            ..++..+.++|+|||.+++..+...           .+.+.+.++++ ||.+..+...
T Consensus       271 ------~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~l~~~~~~~i~~~~~v  317 (336)
T 2yx1_A          271 ------HKFIDKALDIVEEGGVIHYYTIGKD-----------FDKAIKLFEKKCDCEVLEKRIV  317 (336)
T ss_dssp             ------GGGHHHHHHHEEEEEEEEEEEEESS-----------SHHHHHHHHHHSEEEEEEEEEE
T ss_pred             ------HHHHHHHHHHcCCCCEEEEEEeecC-----------chHHHHHHHHhcCCcEEEEEEE
Confidence                  2578889999999999998876553           34555666666 7776555443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.47  E-value=3.6e-13  Score=119.16  Aligned_cols=114  Identities=21%  Similarity=0.138  Sum_probs=87.6

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHH-------HHHhhcCCCC-cceEEEEcc
Q 024008           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKA-------EELSSSLPNA-KFVSFLKAD  165 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a-------~~~~~~~~~~-~~v~~~~~d  165 (274)
                      .+..++.... .++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.|       ++++...++. .+++++.+|
T Consensus       230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            3445555543 35579999999999999999882 4 4899999999999999       8888777643 579999886


Q ss_pred             cCCC---C--CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          166 FFTW---C--PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       166 ~~~~---~--~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ....   .  ..++||+|+++.++.  . +....++.++.++|+|||++++..
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEee
Confidence            5421   1  246899999876652  2 455678899999999999999864

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.47  E-value=3.9e-13  Score=109.37  Aligned_cols=102  Identities=21%  Similarity=0.166  Sum_probs=83.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCCC-CCCCCeeE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTW-CPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~-~~~~~fD~  177 (274)
                      ..++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++....+.    .++++++.+|+... ...++||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            345689999999999999988873   36999999999999999998876432    24799999998763 33568999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      |++..++.++.        +.+.++|+|||++++....
T Consensus       155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred             EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence            99998887663        5788999999999998743

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.47  E-value=1.7e-13  Score=115.17  Aligned_cols=132  Identities=16%  Similarity=0.188  Sum_probs=98.8

Q ss_pred             HHHhcC-CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcC-C-CCcceEEEEcccCCC-CCC
Q 024008          100 HLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL-P-NAKFVSFLKADFFTW-CPT  172 (274)
Q Consensus       100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~-~-~~~~v~~~~~d~~~~-~~~  172 (274)
                      .++... ..++.+|||+|||+|..+..+++   ++.+++++|+++.+++.|+++.... + +.++++++.+|+.+. .+.
T Consensus        90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~  169 (280)
T 1i9g_A           90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD  169 (280)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT
T ss_pred             HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCC
Confidence            344433 34567999999999999999887   3679999999999999999998765 3 346799999999874 446


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc-CCCcEEEEee
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP-MGFQAISIVD  248 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gf~~~~~~~  248 (274)
                      ++||+|++...       ....++.++.++|+|||.+++......          ...++.+.++. .||..+++.+
T Consensus       170 ~~~D~v~~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~----------~~~~~~~~l~~~~~f~~~~~~~  229 (280)
T 1i9g_A          170 GSVDRAVLDML-------APWEVLDAVSRLLVAGGVLMVYVATVT----------QLSRIVEALRAKQCWTEPRAWE  229 (280)
T ss_dssp             TCEEEEEEESS-------CGGGGHHHHHHHEEEEEEEEEEESSHH----------HHHHHHHHHHHHSSBCCCEEEC
T ss_pred             CceeEEEECCc-------CHHHHHHHHHHhCCCCCEEEEEeCCHH----------HHHHHHHHHHhcCCcCCcEEEE
Confidence            78999997321       223678999999999999999874221          24455566666 7887655544

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.47  E-value=2.7e-13  Score=113.84  Aligned_cols=143  Identities=17%  Similarity=0.083  Sum_probs=104.2

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-  170 (274)
                      ...+..++.  ..++.+|||+|||+|..+..+++  .+ .+|+++|+++.+++.+++++...+.. +++++.+|+.... 
T Consensus        72 s~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~  148 (274)
T 3ajd_A           72 SMIPPIVLN--PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKD  148 (274)
T ss_dssp             GGHHHHHHC--CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHH
T ss_pred             HHHHHHHhC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcch
Confidence            344444554  45668999999999999998887  45 79999999999999999999887764 7999999997733 


Q ss_pred             ----CCCCeeEEEecccccccC---------h-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024008          171 ----PTELFDLIFDYTFFCAIE---------P-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS  230 (274)
Q Consensus       171 ----~~~~fD~v~~~~~~~~~~---------~-------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~  230 (274)
                          ..++||+|++...+....         .       .....+++.+.++|+|||++++........       -..+
T Consensus       149 ~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~-------ene~  221 (274)
T 3ajd_A          149 YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE-------ENEE  221 (274)
T ss_dssp             HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT-------SSHH
T ss_pred             hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH-------HhHH
Confidence                257899999874433210         0       123678999999999999999887544321       1355


Q ss_pred             HHHHHHhcC-CCcEEEEe
Q 024008          231 DYEEVLQPM-GFQAISIV  247 (274)
Q Consensus       231 ~~~~~~~~~-Gf~~~~~~  247 (274)
                      .+.++++.+ +|+++.+.
T Consensus       222 ~v~~~l~~~~~~~~~~~~  239 (274)
T 3ajd_A          222 VIKYILQKRNDVELIIIK  239 (274)
T ss_dssp             HHHHHHHHCSSEEEECCC
T ss_pred             HHHHHHHhCCCcEEecCc
Confidence            666667554 57665543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.47  E-value=1.6e-13  Score=111.80  Aligned_cols=102  Identities=25%  Similarity=0.286  Sum_probs=84.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-------CeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCCC-----
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPE-------RYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTW-----  169 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-------~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~-----  169 (274)
                      ..++.+|||+|||+|..+..+++..       .+|+++|+++.+++.|+++....+.    ..+++++.+|+...     
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            3456899999999999999888733       4999999999999999999876542    35799999999873     


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      ...++||+|++..+++++.        +.+.++|+|||++++....
T Consensus       158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 KELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence            3457899999998887653        6788999999999987743

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.47  E-value=9.3e-14  Score=113.29  Aligned_cols=102  Identities=21%  Similarity=0.192  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----C---CCee
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----T---ELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~---~~fD  176 (274)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|++++...+..++++++.+|+.+..+    .   ++||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            45689999999999999999883   679999999999999999999888777789999999865211    1   6899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +|++....     .....+++.+.++|+|||.+++.+
T Consensus       148 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          148 VAVVDADK-----ENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             EEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEEC
Confidence            99986542     334578899999999999999865

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.46  E-value=2.5e-13  Score=119.97  Aligned_cols=137  Identities=17%  Similarity=0.011  Sum_probs=103.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCCC-----CCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWCP-----TELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~-----~~~fD~v~  179 (274)
                      .++.+|||+|||+|..+..+++.|+ +|+++|+++.+++.|++++..+++ .++++++.+|+.+..+     .++||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            4568999999999999999999765 999999999999999999998877 5589999999987432     46899999


Q ss_pred             ecccccccC-------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          180 DYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       180 ~~~~~~~~~-------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +..+.....       ......++..+.+.|+|||++++.+.+....     .....+.+.+.+..+|+....+..
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~i~~~~~~~g~~~~~i~~  369 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT-----SDLFQKIIADAAIDAGRDVQFIEQ  369 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC-----HHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-----HHHHHHHHHHHHHHcCCeEEEEEE
Confidence            876542211       0345678899999999999999987544211     000133445567778866655544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.46  E-value=2.9e-13  Score=113.50  Aligned_cols=105  Identities=16%  Similarity=0.007  Sum_probs=87.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      ..++.+|||+|||+|.++..+++.  ..+|+++|+++.+++.|++++..+++. ++.++.+|+.+....++||+|++..+
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~p  195 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGYV  195 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECCc
Confidence            345679999999999999999884  459999999999999999999888764 58899999987622468999998766


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      ..      ...++..+.+.|+|||++++.++...
T Consensus       196 ~~------~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          196 HK------THKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             SS------GGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             cc------HHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence            42      23567889999999999998886553

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.46  E-value=4.2e-13  Score=118.50  Aligned_cols=144  Identities=16%  Similarity=0.001  Sum_probs=104.8

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CC
Q 024008           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PT  172 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~  172 (274)
                      ..++.....++.+|||+|||+|..+..++..|+ +|+++|+++.+++.|++++..+++.++++++.+|+.+..     ..
T Consensus       208 ~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~  287 (396)
T 2as0_A          208 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKG  287 (396)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhC
Confidence            334443333678999999999999999998765 999999999999999999998887658999999998732     25


Q ss_pred             CCeeEEEecccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          173 ELFDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~-------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ++||+|++.........       .....++..+.++|+|||.+++..+.....     ...-.+.+.+.+...|.....
T Consensus       288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~  362 (396)
T 2as0_A          288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-----LQMFKDMIIAAGAKAGKFLKM  362 (396)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-----HHHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC-----HHHHHHHHHHHHHHcCCeEEE
Confidence            68999998765432221       345678899999999999998887543211     000123344566667766655


Q ss_pred             Ee
Q 024008          246 IV  247 (274)
Q Consensus       246 ~~  247 (274)
                      +.
T Consensus       363 i~  364 (396)
T 2as0_A          363 LE  364 (396)
T ss_dssp             SS
T ss_pred             Ee
Confidence            54

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.46  E-value=7.7e-14  Score=128.64  Aligned_cols=107  Identities=18%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~~  184 (274)
                      .+.+|||||||.|.++..+++.|++|+|||+++.+++.|+.++...+. .+++|.++++.+.   ..+++||+|+|..++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~  144 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSVF  144 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcch
Confidence            457999999999999999999999999999999999999999887653 2699999999773   456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +|++++..-..+..+.+.|+++|..++....
T Consensus       145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~  175 (569)
T 4azs_A          145 HHIVHLHGIDEVKRLLSRLADVTQAVILELA  175 (569)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred             hcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence            9996544333345677778888876665543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.45  E-value=1.8e-13  Score=111.65  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=83.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC-CC-------CeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCCCCCC-
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS-PE-------RYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTWCPT-  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~-~~-------~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~-  172 (274)
                      ..++.+|||+|||+|..+..+++ .+       .+|+++|+++.+++.|+++....+.    ..+++++.+|.....+. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            34567999999999999998887 33       5999999999999999998765431    14699999999874443 


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      ++||+|++..+++++.        +.+.+.|+|||++++....
T Consensus       162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred             CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence            7899999999988764        5789999999999998754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.44  E-value=1.2e-12  Score=116.91  Aligned_cols=143  Identities=18%  Similarity=0.172  Sum_probs=105.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~  181 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..++.. +++|+.+|+.+..     +.++||+|+++
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            34579999999999999999998889999999999999999999887764 7999999998732     24689999987


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhH
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK  261 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~  261 (274)
                      .......     .+++.+.+ ++|++++++.+.+.           +...-...+.+.||.+..+...+. ++.-...|.
T Consensus       364 PPr~g~~-----~~~~~l~~-~~p~~ivyvsc~p~-----------tlard~~~l~~~Gy~~~~~~~~d~-Fp~t~HvE~  425 (433)
T 1uwv_A          364 PARAGAA-----GVMQQIIK-LEPIRIVYVSCNPA-----------TLARDSEALLKAGYTIARLAMLDM-FPHTGHLES  425 (433)
T ss_dssp             CCTTCCH-----HHHHHHHH-HCCSEEEEEESCHH-----------HHHHHHHHHHHTTCEEEEEEEECC-STTSSCCEE
T ss_pred             CCCccHH-----HHHHHHHh-cCCCeEEEEECChH-----------HHHhhHHHHHHCCcEEEEEEEecc-CCCCCeEEE
Confidence            7665442     34455543 78999888876222           333445667778999988776432 333345677


Q ss_pred             HHHhhhh
Q 024008          262 LGRWKRS  268 (274)
Q Consensus       262 ~~~~~~~  268 (274)
                      +.++.|.
T Consensus       426 v~ll~r~  432 (433)
T 1uwv_A          426 MVLFSRV  432 (433)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEEC
Confidence            6666543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.44  E-value=1.2e-13  Score=119.63  Aligned_cols=128  Identities=14%  Similarity=0.143  Sum_probs=100.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---C----CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMASP---E----RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~----~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~  180 (274)
                      ++.+|||+|||+|.++..+++.   .    .+++|+|+++.+++.|+.+....+.  ++++..+|.....+.++||+|++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCccccCCccEEEE
Confidence            4579999999999999888762   1    6899999999999999999876654  58999999988666688999999


Q ss_pred             cccccccChhHH----------------HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008          181 YTFFCAIEPEMR----------------AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       181 ~~~~~~~~~~~~----------------~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      +.++++++.+..                ..++.++.+.|+|||+++++.......  +    -...++.+++.+.|+..
T Consensus       208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~--~----~~~~~ir~~l~~~~~~~  280 (344)
T 2f8l_A          208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG--T----SDFAKVDKFIKKNGHIE  280 (344)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG--S----TTHHHHHHHHHHHEEEE
T ss_pred             CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcC--C----chHHHHHHHHHhCCeEE
Confidence            999877643321                258999999999999988877432111  1    13578888888878744

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.44  E-value=5.2e-13  Score=114.44  Aligned_cols=133  Identities=19%  Similarity=0.202  Sum_probs=94.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCCC--CCCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~fD~v~~  180 (274)
                      ++.+|||+|||+|..+..+++.  +.+++++|+++.+++.|++++...  +. .++++++.+|+.+.  ...++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            4579999999999999999884  579999999999999999998652  22 35799999998763  23578999998


Q ss_pred             cccccccCh-hHH--HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          181 YTFFCAIEP-EMR--AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       181 ~~~~~~~~~-~~~--~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ...- .+.+ ...  ..+++.+.++|+|||++++...+....      .-...++.+.+++. |..+....
T Consensus       196 d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~------~~~~~~~~~~l~~~-F~~v~~~~  258 (321)
T 2pt6_A          196 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIH------VGTIKNMIGYAKKL-FKKVEYAN  258 (321)
T ss_dssp             ECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTC------HHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             CCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccC------HHHHHHHHHHHHHH-CCCeEEEE
Confidence            6532 1211 111  578999999999999999875322100      01234555666665 55554443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.44  E-value=5.2e-13  Score=125.54  Aligned_cols=135  Identities=19%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCC--CCCCCeeEEEecc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTW--CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--~~~~~fD~v~~~~  182 (274)
                      .++.+|||+|||+|..+..++..|+ +|+++|+|+.+++.|++++..+++. ++++++++|+++.  ...++||+|++..
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            3578999999999999999988777 6999999999999999999988876 5899999999873  2357899999876


Q ss_pred             cccc--------cC-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008          183 FFCA--------IE-PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       183 ~~~~--------~~-~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~  252 (274)
                      ....        +. ......++..+.++|+|||++++.+....       +...    .+.++..||+...+.....+
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~-------~~~~----~~~l~~~g~~~~~i~~~~lp  685 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG-------FRMD----LDGLAKLGLKAQEITQKTLS  685 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTT-------CCCC----HHHHHHTTEEEEECTTTTCC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-------cccC----HHHHHHcCCceeeeeeccCC
Confidence            5321        11 13556789999999999999998774321       1112    45677889886666654443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.43  E-value=5.7e-13  Score=117.06  Aligned_cols=135  Identities=21%  Similarity=0.055  Sum_probs=101.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----CCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~fD~v~~~~  182 (274)
                      ++.+|||+|||+|..+..++..+.+|+++|+++.+++.|++++..++..+ ++++.+|+.+..+     .++||+|++..
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp  287 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLDP  287 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence            66799999999999999998876699999999999999999998887754 9999999987322     56899999876


Q ss_pred             cccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          183 FFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~-------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .....+.       .....++..+.++|+|||.+++...+....     ...-.+.+.+.+..+|.....+..
T Consensus       288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~i~~~~~~~g~~~~~i~~  355 (382)
T 1wxx_A          288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-----EPLFYAMVAEAAQDAHRLLRVVEK  355 (382)
T ss_dssp             CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-----HHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC-----HHHHHHHHHHHHHHcCCeEEEEEc
Confidence            5432221       345678899999999999999987544211     000134455567778865554443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.43  E-value=1.5e-12  Score=114.34  Aligned_cols=143  Identities=11%  Similarity=-0.012  Sum_probs=100.9

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCee
Q 024008           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFD  176 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD  176 (274)
                      ..++.....++.+|||+|||+|..+..++..|+.|+++|+|+.+++.|++++..+++.  .++..+|+++..  ..+.||
T Consensus       205 r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~l~~~~~~fD  282 (393)
T 4dmg_A          205 RRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPTLRGLEGPFH  282 (393)
T ss_dssp             HHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHHHHTCCCCEE
T ss_pred             HHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHHHHHhcCCCC
Confidence            4444444445789999999999999999998889999999999999999999887765  356689988732  134499


Q ss_pred             EEEecccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          177 LIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       177 ~v~~~~~~~~~~~-------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +|++......-..       .....++..+.++|+|||.+++........     ...-.+.+.+.+..+|.....+..
T Consensus       283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~-----~~~f~~~v~~a~~~~g~~~~i~~~  356 (393)
T 4dmg_A          283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLR-----LEDLLEVARRAAADLGRRLRVHRV  356 (393)
T ss_dssp             EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-----HHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC-----HHHHHHHHHHHHHHhCCeEEEEEE
Confidence            9998765421111       234678899999999999999776544211     000123445556666766555544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.43  E-value=1.2e-12  Score=110.37  Aligned_cols=134  Identities=17%  Similarity=0.146  Sum_probs=94.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--C-CcceEEEEcccCCC--CCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~--~~~~~fD~v~  179 (274)
                      .++.+|||+|||+|..+..+++.  ..+++++|+++.+++.|+++++..+  + .++++++.+|+.+.  ...++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            34579999999999999999883  4699999999999999999986532  1 36899999998762  2357899999


Q ss_pred             ecccccccChhHH--HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          180 DYTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       180 ~~~~~~~~~~~~~--~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +.......+....  ..+++.+.++|+|||++++...+....      .-....+.+.+++. |..+.+.
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~------~~~~~~~~~~l~~~-F~~v~~~  219 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIH------VGTIKNMIGYAKKL-FKKVEYA  219 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTC------HHHHHHHHHHHHTT-CSEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccC------HHHHHHHHHHHHHH-CCceEEE
Confidence            8644322222222  578999999999999999875322100      01234455555554 6655443

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.43  E-value=8.2e-13  Score=109.05  Aligned_cols=123  Identities=15%  Similarity=0.135  Sum_probs=88.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC--------CCCcceEEEEcccCCC----CCCC
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL--------PNAKFVSFLKADFFTW----CPTE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~----~~~~  173 (274)
                      ++.+|||+|||+|..+..+++  ++.+++|+|+++.+++.+++++...        +. .++.++.+|+.+.    .+.+
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcccc
Confidence            457999999999999999988  4568999999999999999887643        44 4799999999862    3467


Q ss_pred             CeeEEEecccccccChh------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024008          174 LFDLIFDYTFFCAIEPE------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf  241 (274)
                      .+|.|+....-......      ....++..+.++|+|||.+++..-..          .-.+.+.+.+..+|+
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~----------~~~~~~~~~~~~~~~  191 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK----------DLHEWMVKHLEEHPL  191 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH----------HHHHHHHHHHHHSTT
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH----------HHHHHHHHHHHhCcC
Confidence            89999854321111000      00478999999999999999865111          012445556677774

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.43  E-value=7.3e-13  Score=111.16  Aligned_cols=134  Identities=14%  Similarity=0.086  Sum_probs=95.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHhhc--CCC-CcceEEEEcccCCC--CCCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSS--LPN-AKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~--~~~~~fD~v~~  180 (274)
                      .+.+|||+|||+|..+..+++. + .+++++|+++.+++.|++++..  .++ .++++++.+|....  ...++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4689999999999999999884 4 6999999999999999998753  122 36899999998762  23578999998


Q ss_pred             cccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          181 YTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       181 ~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .......+..  ....+++.+.++|+|||++++...++..      ..-....+.+.+++. |..+....
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~------~~~~~~~~~~~l~~~-F~~v~~~~  217 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF------TPELITNVQRDVKEI-FPITKLYT  217 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTT------CHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc------cHHHHHHHHHHHHHh-CCCeEEEE
Confidence            6543222111  1246889999999999999887532210      011245566667776 66555443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.43  E-value=8e-13  Score=114.15  Aligned_cols=103  Identities=16%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC-C--CeEEEEeCChHHHHHHHHHhhcCC----------CCcceEEEEcccCCC---
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASP-E--RYVVGLEISDIAIKKAEELSSSLP----------NAKFVSFLKADFFTW---  169 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~~iD~s~~~~~~a~~~~~~~~----------~~~~v~~~~~d~~~~---  169 (274)
                      ..++.+|||+|||+|..+..+++. +  .+|+++|+++.+++.|+++....+          ...++++..+|+.+.   
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            456689999999999999999874 3  799999999999999999986421          235799999999874   


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      .+.++||+|++.....       ..++.++.++|+|||.+++....
T Consensus       183 ~~~~~fD~V~~~~~~~-------~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          183 IKSLTFDAVALDMLNP-------HVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             -----EEEEEECSSST-------TTTHHHHGGGEEEEEEEEEEESS
T ss_pred             cCCCCeeEEEECCCCH-------HHHHHHHHHhcCCCcEEEEEeCC
Confidence            2456899999754321       23678999999999999987643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.42  E-value=4.9e-13  Score=104.02  Aligned_cols=118  Identities=13%  Similarity=0.162  Sum_probs=91.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~~  174 (274)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++ ++..           .+++++.+|+.+.         .++++
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCCc
Confidence            45679999999999999988873   57999999998 5422           4689999999874         55678


Q ss_pred             eeEEEecccccccChh---HH------HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          175 FDLIFDYTFFCAIEPE---MR------AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~---~~------~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ||+|+++.++++....   ..      ..++..+.++|+|||.+++..+...          ...++.+.++.. |..+.
T Consensus        89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------~~~~~~~~~~~~-~~~~~  157 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE----------GFDEYLREIRSL-FTKVK  157 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST----------THHHHHHHHHHH-EEEEE
T ss_pred             eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC----------cHHHHHHHHHHh-hhhEE
Confidence            9999998887765322   11      5789999999999999998775432          456777777774 77666


Q ss_pred             Ee
Q 024008          246 IV  247 (274)
Q Consensus       246 ~~  247 (274)
                      +.
T Consensus       158 ~~  159 (180)
T 1ej0_A          158 VR  159 (180)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.41  E-value=5.9e-13  Score=112.10  Aligned_cols=106  Identities=20%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcC--CC--------CcceEEEEcccCCCCC-CCC
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSL--PN--------AKFVSFLKADFFTWCP-TEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~~~~-~~~  174 (274)
                      ..+.+|||+|||+|..+..+++. ..+++++|+++.+++.|++++ ..  ++        .++++++.+|..+..+ .++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            34579999999999999999885 459999999999999999988 33  21        3689999999866211 578


Q ss_pred             eeEEEecccccccChhH--HHHHHHHHHhcccCCcEEEEEE
Q 024008          175 FDLIFDYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~--~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ||+|++......-+...  ...+++.+.++|+|||++++..
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            99999865532211122  2678899999999999998875

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=8.1e-13  Score=112.18  Aligned_cols=104  Identities=18%  Similarity=0.080  Sum_probs=83.4

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~~  184 (274)
                      .+|||||||+|..+..+++  ++.+++++|+++.+++.|++++... ..++++++.+|..+.   .+.++||+|++....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            4999999999999999987  6789999999999999999998653 246899999999873   245789999986433


Q ss_pred             cccChhH--HHHHHHHHHhcccCCcEEEEEEc
Q 024008          185 CAIEPEM--RAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       185 ~~~~~~~--~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ....+..  ...+++.++++|+|||++++...
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            2211111  25789999999999999988764

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.41  E-value=1.4e-12  Score=111.53  Aligned_cols=134  Identities=13%  Similarity=0.071  Sum_probs=95.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhc--CC-C-CcceEEEEcccCCC--CCCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS--LP-N-AKFVSFLKADFFTW--CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~--~~-~-~~~v~~~~~d~~~~--~~~~~fD~v  178 (274)
                      ..+.+|||||||+|..+..+++.  +.+++++|+++.+++.|++++..  .+ + .++++++.+|+.+.  ...++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            34579999999999999999884  56999999999999999998754  21 1 36899999999763  245789999


Q ss_pred             Eecccccc---cChhH--HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008          179 FDYTFFCA---IEPEM--RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       179 ~~~~~~~~---~~~~~--~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      ++....+.   -+...  ...+++.+.++|+|||++++...++...  .   .-....+.+.+++. |..+..
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~--~---~~~~~~~~~~l~~~-F~~v~~  222 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLT--H---HRVHPVVHRTVREA-FRYVRS  222 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC--------CHHHHHHHHHHTT-CSEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCcccc--C---HHHHHHHHHHHHHH-CCceEE
Confidence            99765543   11111  3678999999999999999865332100  0   01245566666665 554443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.40  E-value=4.8e-13  Score=114.21  Aligned_cols=105  Identities=22%  Similarity=0.254  Sum_probs=80.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCCC--CCCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~fD~v~~  180 (274)
                      .+.+|||||||+|..+..+++.  ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.  ...++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            4579999999999999999883  569999999999999999998653  22 46899999998763  24578999998


Q ss_pred             cccccccCh-hHH--HHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEP-EMR--AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~-~~~--~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ...- ++.+ ...  ..+++.+.++|+|||++++..
T Consensus       188 d~~~-~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCCC-CCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            6532 2221 111  678999999999999999865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.40  E-value=1.1e-12  Score=112.94  Aligned_cols=107  Identities=15%  Similarity=0.138  Sum_probs=83.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCCC---CCCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTW---CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~---~~~~~fD~v  178 (274)
                      ..+.+|||||||+|..+..+++.  ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.   .+.++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            34579999999999999999884  569999999999999999987642  22 25799999998763   235789999


Q ss_pred             EecccccccChhH--HHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~~--~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ++...-..-....  ...+++.+.++|+|||++++..
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9865421111111  3678999999999999999864

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.40  E-value=9.7e-13  Score=111.90  Aligned_cols=107  Identities=21%  Similarity=0.213  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhc--CCC-CcceEEEEcccCCC--CCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS--LPN-AKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~--~~~~~fD~v~  179 (274)
                      ..+.+|||+|||+|..+..+++.  ..+++++|+++.+++.|++++..  .++ .++++++.+|+.+.  ...++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            34579999999999999999884  46999999999999999998764  222 36899999998762  3457899999


Q ss_pred             ecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +.......+..  ....+++++.++|+|||++++..
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            86543221111  12568899999999999999866

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.40  E-value=9.3e-13  Score=111.68  Aligned_cols=134  Identities=13%  Similarity=0.012  Sum_probs=91.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhc--CCC-CcceEEEEcccCCC--CCCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS--LPN-AKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~--~~~~~fD~v~~  180 (274)
                      .+.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|++++..  .+. .++++++.+|+...  ...++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            4579999999999999999884  46999999999999999998753  122 35799999998762  23578999997


Q ss_pred             cccccccCh-h--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          181 YTFFCAIEP-E--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       181 ~~~~~~~~~-~--~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ........+ .  ....+++.+.++|+|||++++...++..      ..-....+.+.+++. |..+....
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~------~~~~~~~~~~~l~~~-F~~v~~~~  233 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY------DIGWFKLAYRRISKV-FPITRVYL  233 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTT------THHHHHHHHHHHHHH-CSEEEEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCccc------CHHHHHHHHHHHHHH-CCceEEEE
Confidence            543220111 1  1257889999999999999987532210      001234555666665 55555433

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.40  E-value=3.9e-12  Score=101.43  Aligned_cols=117  Identities=15%  Similarity=0.190  Sum_probs=85.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC------------
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------  170 (274)
                      .++.+|||+|||+|..+..+++  +  +.+|+|+|+++..         .   ..+++++++|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~---~~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P---IPNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C---CTTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C---CCCceEEEccccchhhhhhcccccccc
Confidence            3557999999999999999987  3  5799999999831         1   146899999998743            


Q ss_pred             --------------CCCCeeEEEecccccccC---hhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCccc
Q 024008          171 --------------PTELFDLIFDYTFFCAIE---PEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV  227 (274)
Q Consensus       171 --------------~~~~fD~v~~~~~~~~~~---~~~------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~  227 (274)
                                    +.++||+|++..++++..   .+.      ...++..+.++|+|||.+++..+...          
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------  158 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS----------  158 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST----------
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC----------
Confidence                          457899999987766531   111      12478899999999999998665331          


Q ss_pred             CHHHHHHHHhcCCCcEEEE
Q 024008          228 SVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       228 ~~~~~~~~~~~~Gf~~~~~  246 (274)
                      +..++.+.++. .|..+.+
T Consensus       159 ~~~~l~~~l~~-~f~~v~~  176 (201)
T 2plw_A          159 QTNNLKTYLKG-MFQLVHT  176 (201)
T ss_dssp             THHHHHHHHHT-TEEEEEE
T ss_pred             CHHHHHHHHHH-HHheEEE
Confidence            35677777766 4665554

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.39  E-value=9.7e-13  Score=111.00  Aligned_cols=111  Identities=19%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      +..++.... .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++....+..++++++.+|+.+... ..||
T Consensus        17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-~~fD   95 (285)
T 1zq9_A           17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-PFFD   95 (285)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-CCCS
T ss_pred             HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc-hhhc
Confidence            444444443 35579999999999999999998889999999999999999998766554689999999987433 3799


Q ss_pred             EEEecccccccChhHHHHHHHH--------------H--HhcccCCcEEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQK--------------I--KDFLKPDGELI  210 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~--------------l--~~~L~~gG~l~  210 (274)
                      +|+++.+++..+ +....+++.              +  +.+++|||.++
T Consensus        96 ~vv~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           96 TCVANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             EEEEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             EEEEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            999987766432 233333321              1  35889999764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.38  E-value=6.7e-12  Score=99.59  Aligned_cols=119  Identities=13%  Similarity=0.208  Sum_probs=87.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--------C----CC
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------T----EL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~----~~  174 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++..         .   ..+++++++|+.+...        .    ++
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~---~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~   91 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------E---IAGVRFIRCDIFKETIFDDIDRALREEGIEK   91 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------C---CTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred             CCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------c---CCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence            456899999999999999999988899999999741         1   1469999999987321        1    48


Q ss_pred             eeEEEecccccccC---h------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          175 FDLIFDYTFFCAIE---P------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 fD~v~~~~~~~~~~---~------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ||+|++........   .      .....++..+.++|+|||.+++..+...          ...++.+.++. .|..+.
T Consensus        92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~----------~~~~~~~~l~~-~F~~v~  160 (191)
T 3dou_A           92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD----------MTNDFIAIWRK-NFSSYK  160 (191)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST----------HHHHHHHHHGG-GEEEEE
T ss_pred             ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC----------CHHHHHHHHHH-hcCEEE
Confidence            99999976432211   0      1235778889999999999998776442          34577777766 577666


Q ss_pred             Eee
Q 024008          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       161 ~~k  163 (191)
T 3dou_A          161 ISK  163 (191)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            544

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.36  E-value=3.8e-13  Score=110.45  Aligned_cols=120  Identities=12%  Similarity=0.018  Sum_probs=89.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---C-CC-CCee
Q 024008          108 PKGRALVPGCGTGYDVVAMASP------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C-PT-ELFD  176 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~-~~-~~fD  176 (274)
                      ++.+|||||||+|..+..+++.      +.+|+++|+++.+++.|+.      ..++++++.+|+.+.   . .. .+||
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~~~~~l~~~~~~~fD  154 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHP  154 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcchhHHHHHhhccCCCC
Confidence            4679999999999999988764      6799999999999888872      125799999999873   1 22 3799


Q ss_pred             EEEecccccccChhHHHHHHHHHHh-cccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC--CCcEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKD-FLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM--GFQAI  244 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~-~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Gf~~~  244 (274)
                      +|++...  +.   ....++.++.+ +|+|||++++.+..+..      .....+.+.++++.+  +|.+.
T Consensus       155 ~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~~~~~------~~~~~~~~~~~l~~~~~~f~~~  214 (236)
T 2bm8_A          155 LIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDMIPYW------YRYAPQLFSEYLGAFRDVLSMD  214 (236)
T ss_dssp             EEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSCHHHH------HHHCHHHHHHHHHTTTTTEEEE
T ss_pred             EEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeCcccc------cccCHHHHHHHHHhCcccEEEc
Confidence            9997654  22   34568899997 99999999997541100      012456888889888  56654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.35  E-value=1.6e-12  Score=113.73  Aligned_cols=145  Identities=11%  Similarity=0.030  Sum_probs=101.8

Q ss_pred             HHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CC-----
Q 024008          101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PT-----  172 (274)
Q Consensus       101 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-----  172 (274)
                      +++.....+.+|||+|||+|.++..+++...+|+|+|+++.+++.|++++..+++ ++++|+.+|+.+..   ..     
T Consensus       206 ~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~  284 (369)
T 3bt7_A          206 ALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFN  284 (369)
T ss_dssp             HHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCT
T ss_pred             HHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhccccc
Confidence            3444444467899999999999999998777999999999999999999988876 47999999987621   11     


Q ss_pred             ---------CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC-HHHHHHHHhcCCCc
Q 024008          173 ---------ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS-VSDYEEVLQPMGFQ  242 (274)
Q Consensus       173 ---------~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gf~  242 (274)
                               .+||+|+.......+.        .++.+.|+++|.++++..++.          + ..++..+ .. ||+
T Consensus       285 ~l~~~~~~~~~fD~Vv~dPPr~g~~--------~~~~~~l~~~g~ivyvsc~p~----------t~ard~~~l-~~-~y~  344 (369)
T 3bt7_A          285 RLQGIDLKSYQCETIFVDPPRSGLD--------SETEKMVQAYPRILYISCNPE----------TLCKNLETL-SQ-THK  344 (369)
T ss_dssp             TGGGSCGGGCCEEEEEECCCTTCCC--------HHHHHHHTTSSEEEEEESCHH----------HHHHHHHHH-HH-HEE
T ss_pred             cccccccccCCCCEEEECcCccccH--------HHHHHHHhCCCEEEEEECCHH----------HHHHHHHHH-hh-CcE
Confidence                     3799999765544332        345556668888877764331          2 2344433 33 799


Q ss_pred             EEEEeecccccCCccchhHHHHhhh
Q 024008          243 AISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      +..+...+. ++.-...|++.++.|
T Consensus       345 ~~~~~~~D~-FP~T~HvE~v~ll~r  368 (369)
T 3bt7_A          345 VERLALFDQ-FPYTHHMQCGVLLTA  368 (369)
T ss_dssp             EEEEEEECC-STTSSCCEEEEEEEE
T ss_pred             EEEEEeecc-CCCCCcEEEEEEEEe
Confidence            888877553 333445666665543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.35  E-value=3.1e-12  Score=114.22  Aligned_cols=142  Identities=13%  Similarity=0.103  Sum_probs=104.7

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-  170 (274)
                      ...+..++.  ..++.+|||+|||+|..+..+++   ...+|+++|+++.+++.+++++...++.  +.++.+|+.... 
T Consensus        90 s~l~a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~  165 (464)
T 3m6w_A           90 AQAVGVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAE  165 (464)
T ss_dssp             THHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHH
T ss_pred             HHHHHHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhh
Confidence            444445554  45678999999999999999886   2359999999999999999999888764  899999987632 


Q ss_pred             -CCCCeeEEEecccc------cc-------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH
Q 024008          171 -PTELFDLIFDYTFF------CA-------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV  229 (274)
Q Consensus       171 -~~~~fD~v~~~~~~------~~-------~~~~-------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~  229 (274)
                       ..++||+|++....      ..       +.++       ....+++.+.++|+|||+++...++...       .-..
T Consensus       166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~-------eEne  238 (464)
T 3m6w_A          166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP-------EENE  238 (464)
T ss_dssp             HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG-------GGTH
T ss_pred             hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch-------hcCH
Confidence             35789999974332      11       1111       1267899999999999999987754421       1246


Q ss_pred             HHHHHHHhcC-CCcEEEEe
Q 024008          230 SDYEEVLQPM-GFQAISIV  247 (274)
Q Consensus       230 ~~~~~~~~~~-Gf~~~~~~  247 (274)
                      +.+..+++.+ +|+++.+.
T Consensus       239 ~vv~~~l~~~~~~~l~~~~  257 (464)
T 3m6w_A          239 GVVAHFLKAHPEFRLEDAR  257 (464)
T ss_dssp             HHHHHHHHHCTTEEEECCC
T ss_pred             HHHHHHHHHCCCcEEEecc
Confidence            6777777777 58776654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.35  E-value=1.2e-11  Score=110.94  Aligned_cols=134  Identities=13%  Similarity=0.135  Sum_probs=100.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~v~  179 (274)
                      ..++.+|||+|||+|..+..++.  .+ .+++++|+++.+++.+++++...+. .+++++.+|+....   +.++||+|+
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl  335 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEEVADKVL  335 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcchhhccCCCCEEE
Confidence            45567999999999999999887  44 6999999999999999999988776 36999999998743   336899999


Q ss_pred             ecc------cccccChh-------H-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC
Q 024008          180 DYT------FFCAIEPE-------M-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       180 ~~~------~~~~~~~~-------~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                      +..      ++...++.       .       ...++..+.++|+|||.+++.++.....       -..+.+.++++.+
T Consensus       336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~-------ene~~v~~~l~~~  408 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE-------ENEKNIRWFLNVH  408 (450)
T ss_dssp             EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-------GTHHHHHHHHHHC
T ss_pred             EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------hHHHHHHHHHHhC
Confidence            742      22221111       0       1578999999999999999887654311       1355677778877


Q ss_pred             -CCcEEEEe
Q 024008          240 -GFQAISIV  247 (274)
Q Consensus       240 -Gf~~~~~~  247 (274)
                       ||..+.+.
T Consensus       409 ~~~~~~~~~  417 (450)
T 2yxl_A          409 PEFKLVPLK  417 (450)
T ss_dssp             SSCEECCCC
T ss_pred             CCCEEeecc
Confidence             68876543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.35  E-value=1.9e-12  Score=112.40  Aligned_cols=109  Identities=17%  Similarity=0.106  Sum_probs=83.8

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCC------cchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc
Q 024008           95 APIIVHLHQSGALPKGRALVPGCG------TGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD  165 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G------~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  165 (274)
                      ...+..++.....++.+|||||||      +|..+..+++   ++.+|+|+|+++.+.      .    ..++++|+++|
T Consensus       203 ~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~----~~~rI~fv~GD  272 (419)
T 3sso_A          203 TPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V----DELRIRTIQGD  272 (419)
T ss_dssp             HHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G----CBTTEEEEECC
T ss_pred             HHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h----cCCCcEEEEec
Confidence            456667776555667899999999      7776666654   578999999999862      1    12579999999


Q ss_pred             cCCC-CC------CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          166 FFTW-CP------TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       166 ~~~~-~~------~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      +.+. ..      .++||+|++... +++  .+...++++++++|||||++++.+...
T Consensus       273 a~dlpf~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t  327 (419)
T 3sso_A          273 QNDAEFLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMWT  327 (419)
T ss_dssp             TTCHHHHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred             ccccchhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            9873 22      478999998754 333  456788999999999999999987653

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.34  E-value=4.4e-12  Score=113.08  Aligned_cols=143  Identities=15%  Similarity=0.052  Sum_probs=106.9

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-  170 (274)
                      ...+..++.  ..++.+|||+|||+|..+..++.   ...+|+++|+++.+++.+++++...++. ++.++.+|..... 
T Consensus        94 s~l~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~  170 (456)
T 3m4x_A           94 AMIVGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVP  170 (456)
T ss_dssp             THHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHH
T ss_pred             HHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhh
Confidence            444455554  45678999999999999998886   2469999999999999999999888764 6999999987632 


Q ss_pred             -CCCCeeEEEecccccc---c--Chh---------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH
Q 024008          171 -PTELFDLIFDYTFFCA---I--EPE---------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV  229 (274)
Q Consensus       171 -~~~~fD~v~~~~~~~~---~--~~~---------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~  229 (274)
                       .++.||.|++......   +  +++               ....++..+.++|+|||+++....+...       .-..
T Consensus       171 ~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~-------eEne  243 (456)
T 3m4x_A          171 HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP-------EENE  243 (456)
T ss_dssp             HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG-------GGTH
T ss_pred             hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc-------ccCH
Confidence             3578999998654211   1  111               1137889999999999999987755421       1256


Q ss_pred             HHHHHHHhcCCCcEEEEe
Q 024008          230 SDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       230 ~~~~~~~~~~Gf~~~~~~  247 (274)
                      +.+..+++.+||+++.+.
T Consensus       244 ~vv~~~l~~~~~~l~~~~  261 (456)
T 3m4x_A          244 EIISWLVENYPVTIEEIP  261 (456)
T ss_dssp             HHHHHHHHHSSEEEECCC
T ss_pred             HHHHHHHHhCCCEEEecc
Confidence            778888899898776654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.34  E-value=2.8e-11  Score=107.45  Aligned_cols=99  Identities=15%  Similarity=0.043  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..+++.  ++|+.+|+.+..+. +||+|++......
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~~-~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSVK-GFDTVIVDPPRAG  365 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCCT-TCSEEEECCCTTC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCcc-CCCEEEEcCCccc
Confidence            45679999999999999999998889999999999999999999877654  99999999986544 8999998776544


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +.    ..+++.+. .|+|+|++++.+
T Consensus       366 ~~----~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          366 LH----PRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             SC----HHHHHHHH-HHCCSEEEEEES
T ss_pred             hH----HHHHHHHH-hcCCCcEEEEEC
Confidence            43    23445554 489999999876

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.28  E-value=1.1e-11  Score=110.21  Aligned_cols=132  Identities=25%  Similarity=0.356  Sum_probs=96.6

Q ss_pred             ccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC
Q 024008           94 PAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (274)
Q Consensus        94 ~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  169 (274)
                      +......++.... .++.+|||+|||+|.++..+++   .+.+++|+|+++.+++.|          .+++++.+|+...
T Consensus        24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~   93 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLW   93 (421)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhc
Confidence            3444444444443 3457999999999999999887   467999999999988766          3589999999887


Q ss_pred             CCCCCeeEEEeccccccc----------ChhHH-----------------HHHHHHHHhcccCCcEEEEEEccCCCCCCC
Q 024008          170 CPTELFDLIFDYTFFCAI----------EPEMR-----------------AAWAQKIKDFLKPDGELITLMFPISDHVGG  222 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~~----------~~~~~-----------------~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~  222 (274)
                      .+.++||+|+++.++...          +.+..                 ..+++++.++|+|||.+++........   
T Consensus        94 ~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~---  170 (421)
T 2ih2_A           94 EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLV---  170 (421)
T ss_dssp             CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGT---
T ss_pred             CccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhc---
Confidence            666799999998776432          12221                 266899999999999988877432110   


Q ss_pred             CCcccCHHHHHHHHhcCCC
Q 024008          223 PPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~Gf  241 (274)
                         .-..+.+.+.+.+.|+
T Consensus       171 ---~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          171 ---LEDFALLREFLAREGK  186 (421)
T ss_dssp             ---CGGGHHHHHHHHHHSE
T ss_pred             ---CccHHHHHHHHHhcCC
Confidence               0135678888888887

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.28  E-value=3.6e-12  Score=106.83  Aligned_cols=114  Identities=15%  Similarity=0.042  Sum_probs=78.8

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh-hcCCCCcceEEE--EcccCCCCCCC
Q 024008           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFL--KADFFTWCPTE  173 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~  173 (274)
                      +..+.+.. ..++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.. .......++.++  ++|+..+. ++
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~  147 (276)
T 2wa2_A           71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PF  147 (276)
T ss_dssp             HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CC
T ss_pred             HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CC
Confidence            44444443 235679999999999999999888 7999999998 433332211 111111268999  89998744 67


Q ss_pred             CeeEEEecccccccCh---hHH--HHHHHHHHhcccCCc--EEEEEEcc
Q 024008          174 LFDLIFDYTFFCAIEP---EMR--AAWAQKIKDFLKPDG--ELITLMFP  215 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~---~~~--~~~l~~l~~~L~~gG--~l~~~~~~  215 (274)
                      +||+|++..+ ++...   +..  ..++..+.++|+|||  .+++..+.
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            8999999876 33211   111  137899999999999  98887764

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.27  E-value=3.2e-11  Score=102.32  Aligned_cols=78  Identities=17%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.++++....+. ++++++.+|+.+... .+||+|+++.+++.
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-~~~D~Vv~n~py~~  118 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-PKFDVCTANIPYKI  118 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-CCCSEEEEECCGGG
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-ccCCEEEEcCCccc
Confidence            4567999999999999999999888999999999999999999876554 579999999987543 47999999877664

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.27  E-value=1.9e-11  Score=102.72  Aligned_cols=115  Identities=16%  Similarity=0.123  Sum_probs=84.3

Q ss_pred             CCCCeEEEEcCCc------chhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEE-EEcccCCCCCCCCee
Q 024008          107 LPKGRALVPGCGT------GYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSF-LKADFFTWCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~------G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~fD  176 (274)
                      .++.+|||+|||+      |.  ..+++   .+.+|+|+|+++.        +      .++++ +++|+.+....++||
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v------~~v~~~i~gD~~~~~~~~~fD  125 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V------SDADSTLIGDCATVHTANKWD  125 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B------CSSSEEEESCGGGCCCSSCEE
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C------CCCEEEEECccccCCccCccc
Confidence            4567999999944      65  22332   3579999999997        1      25888 999998855557899


Q ss_pred             EEEecccccc--------c-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          177 LIFDYTFFCA--------I-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       177 ~v~~~~~~~~--------~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +|+++.....        . .......+++.+.++|+|||.+++..+...          ...++.++++..||..+.+.
T Consensus       126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~----------~~~~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------WNADLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----------CCHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC----------CHHHHHHHHHHcCCcEEEEE
Confidence            9999754221        1 013346789999999999999999775432          34588899999999876664

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.26  E-value=4.7e-12  Score=105.50  Aligned_cols=117  Identities=15%  Similarity=0.108  Sum_probs=80.0

Q ss_pred             cHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh-hcCCCCcceEEE--EcccCCCC
Q 024008           95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFL--KADFFTWC  170 (274)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~  170 (274)
                      ...+..+.+.. ..++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.. .......++.++  ++|+....
T Consensus        60 a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  137 (265)
T 2oxt_A           60 TAKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP  137 (265)
T ss_dssp             HHHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred             HHHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence            33445555443 335679999999999999999888 8999999998 432222111 001111268999  89998754


Q ss_pred             CCCCeeEEEecccccccCh---hHH--HHHHHHHHhcccCCc--EEEEEEcc
Q 024008          171 PTELFDLIFDYTFFCAIEP---EMR--AAWAQKIKDFLKPDG--ELITLMFP  215 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~---~~~--~~~l~~l~~~L~~gG--~l~~~~~~  215 (274)
                       +++||+|++..+ ++...   +..  ..++..+.++|+|||  .+++..+.
T Consensus       138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence             678999999876 33221   111  137899999999999  98887764

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.26  E-value=4.6e-11  Score=107.53  Aligned_cols=125  Identities=15%  Similarity=0.108  Sum_probs=93.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~  182 (274)
                      ++.+|||+|||+|..+..+++   ....|+++|+++.+++.+++++...+.. ++.++.+|+....  ..+.||.|++..
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence            678999999999999999887   2469999999999999999999877653 6999999998732  457899999843


Q ss_pred             cc------cc-------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008          183 FF------CA-------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       183 ~~------~~-------~~~~-------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  240 (274)
                      ..      ..       +.++       ....++..+.++|+|||++++..++....       -+.+.+..+++.++
T Consensus       196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~-------Ene~vv~~~l~~~~  266 (479)
T 2frx_A          196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE-------ENEAVCLWLKETYP  266 (479)
T ss_dssp             CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST-------TTHHHHHHHHHHST
T ss_pred             CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc-------cCHHHHHHHHHHCC
Confidence            22      11       1111       12468899999999999999887654311       13455666666665

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.25  E-value=9.6e-12  Score=103.48  Aligned_cols=97  Identities=13%  Similarity=0.045  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .+.+|||||||+|..+..+++.+.+++++|+++.+++.|+++++..  +. .++++++.+|..+..  ++||+|++... 
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~-  148 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQE-  148 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESSC-
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECCC-
Confidence            4579999999999999988775579999999999999999876431  11 357999999998755  78999997621 


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                         + +  ..+++.+.++|+|||++++..
T Consensus       149 ---d-p--~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          149 ---P-D--IHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             ---C-C--HHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---C-h--HHHHHHHHHhcCCCcEEEEEc
Confidence               2 2  237899999999999998864

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.24  E-value=7.8e-11  Score=104.98  Aligned_cols=131  Identities=15%  Similarity=0.090  Sum_probs=97.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~  180 (274)
                      ..++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.+++++...+.  ++.++.+|+...   .+.++||+|++
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccCCCCEEEE
Confidence            45668999999999999999987  347999999999999999999988775  478999999874   34478999997


Q ss_pred             cccc------cccCh-------hH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024008          181 YTFF------CAIEP-------EM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-  239 (274)
Q Consensus       181 ~~~~------~~~~~-------~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  239 (274)
                      ....      .+.++       ..       ...++.++.++|+|||++++..++....       .....+.++++.+ 
T Consensus       322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~-------ene~~v~~~l~~~~  394 (429)
T 1sqg_A          322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-------ENSLQIKAFLQRTA  394 (429)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-------GTHHHHHHHHHHCT
T ss_pred             eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-------hHHHHHHHHHHhCC
Confidence            4332      22111       11       1478999999999999999987544211       1355677777776 


Q ss_pred             CCcEEE
Q 024008          240 GFQAIS  245 (274)
Q Consensus       240 Gf~~~~  245 (274)
                      +|+++.
T Consensus       395 ~~~~~~  400 (429)
T 1sqg_A          395 DAELCE  400 (429)
T ss_dssp             TCEECS
T ss_pred             CCEEeC
Confidence            576543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.23  E-value=5.6e-11  Score=94.21  Aligned_cols=117  Identities=22%  Similarity=0.243  Sum_probs=82.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-C----------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEE-EcccCCC-----
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP-E----------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-KADFFTW-----  169 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~----------~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~-----  169 (274)
                      .++.+|||+|||+|..+..+++. +          .+|+++|+++..           .. .+++++ .+|+...     
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHH
Confidence            45689999999999999999873 3          789999999831           11 358888 8898762     


Q ss_pred             ----CCCCCeeEEEecccccccC---hhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024008          170 ----CPTELFDLIFDYTFFCAIE---PEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       170 ----~~~~~fD~v~~~~~~~~~~---~~~------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                          .+.++||+|++...++...   .+.      ...++.++.++|+|||.+++..+...          ...++.+.+
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------~~~~~~~~l  158 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS----------QSRRLQRRL  158 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG----------GGHHHHHHH
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc----------cHHHHHHHH
Confidence                2345899999976544311   111      14788999999999999999875331          235666666


Q ss_pred             hcCCCcEEEE
Q 024008          237 QPMGFQAISI  246 (274)
Q Consensus       237 ~~~Gf~~~~~  246 (274)
                      .. .|..+.+
T Consensus       159 ~~-~f~~v~~  167 (196)
T 2nyu_A          159 TE-EFQNVRI  167 (196)
T ss_dssp             HH-HEEEEEE
T ss_pred             HH-HhcceEE
Confidence            65 3655444

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.23  E-value=1.5e-11  Score=110.04  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=91.7

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC---------------CCCeEEEEeCChHHHHHHHHHhhcCCCC
Q 024008           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---------------PERYVVGLEISDIAIKKAEELSSSLPNA  156 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---------------~~~~v~~iD~s~~~~~~a~~~~~~~~~~  156 (274)
                      .|......+++.. ..++.+|||+|||+|.++..+++               .+.+++|+|+++.++..|+.++...+..
T Consensus       155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            3444333333332 34457999999999999987765               2368999999999999999998776653


Q ss_pred             c-ceEEEEcccCCCCCCCCeeEEEecccccccChh---------------HHHHHHHHHHhcccCCcEEEEEEc
Q 024008          157 K-FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPE---------------MRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       157 ~-~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~---------------~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      . ++++..+|........+||+|+++.++......               ....++.++.+.|+|||++.++..
T Consensus       235 ~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            2 688999999875555689999999888764211               113689999999999999887763

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.23  E-value=5.4e-11  Score=104.53  Aligned_cols=113  Identities=14%  Similarity=0.161  Sum_probs=87.0

Q ss_pred             HHhcC-CCCCCeEEEEcCCcchhHHHhhC--CC--------------------------------------CeEEEEeCC
Q 024008          101 LHQSG-ALPKGRALVPGCGTGYDVVAMAS--PE--------------------------------------RYVVGLEIS  139 (274)
Q Consensus       101 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~--~~--------------------------------------~~v~~iD~s  139 (274)
                      ++... ..++..|||++||+|.+++.++.  .+                                      .+|+|+|++
T Consensus       193 ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  272 (393)
T 3k0b_A          193 LVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDID  272 (393)
T ss_dssp             HHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECC
Confidence            34433 34557999999999999887765  11                                      469999999


Q ss_pred             hHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc-cC-hhHHHHHHHHHHhcccC--CcEEEEEE
Q 024008          140 DIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-IE-PEMRAAWAQKIKDFLKP--DGELITLM  213 (274)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~-~~-~~~~~~~l~~l~~~L~~--gG~l~~~~  213 (274)
                      +.+++.|++++...++.+++++.++|+.+..+..+||+|+++..+.. +. ......+...+.+.|++  ||.+++..
T Consensus       273 ~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          273 ARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99999999999999887789999999998666679999999988753 21 13444555666666655  88888776

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.23  E-value=9.2e-11  Score=102.65  Aligned_cols=113  Identities=10%  Similarity=0.167  Sum_probs=89.5

Q ss_pred             HHhcC-CCCCCeEEEEcCCcchhHHHhhC--CC--------------------------------------CeEEEEeCC
Q 024008          101 LHQSG-ALPKGRALVPGCGTGYDVVAMAS--PE--------------------------------------RYVVGLEIS  139 (274)
Q Consensus       101 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~--~~--------------------------------------~~v~~iD~s  139 (274)
                      ++... ..++..|||++||+|.+++.++.  .+                                      .+++|+|++
T Consensus       186 ll~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid  265 (384)
T 3ldg_A          186 IILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFD  265 (384)
T ss_dssp             HHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECC
Confidence            34433 34557999999999999887775  21                                      459999999


Q ss_pred             hHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc-c-ChhHHHHHHHHHHhcccC--CcEEEEEE
Q 024008          140 DIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-I-EPEMRAAWAQKIKDFLKP--DGELITLM  213 (274)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~-~-~~~~~~~~l~~l~~~L~~--gG~l~~~~  213 (274)
                      +.+++.|++|+...++.++++|.++|+.+.....+||+|+++..+.. + +......+...+.+.|++  ||.+++..
T Consensus       266 ~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          266 GRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT  343 (384)
T ss_dssp             HHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence            99999999999999888889999999998666678999999988764 3 234556666777777766  88888876

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.23  E-value=7.9e-11  Score=103.29  Aligned_cols=113  Identities=14%  Similarity=0.168  Sum_probs=88.2

Q ss_pred             HHhcCC-CCCCeEEEEcCCcchhHHHhhCCC----------------------------------------CeEEEEeCC
Q 024008          101 LHQSGA-LPKGRALVPGCGTGYDVVAMASPE----------------------------------------RYVVGLEIS  139 (274)
Q Consensus       101 ~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~----------------------------------------~~v~~iD~s  139 (274)
                      ++.... .++.+|||++||+|.+++.++..+                                        .+|+|+|++
T Consensus       187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  266 (385)
T 3ldu_A          187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID  266 (385)
T ss_dssp             HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred             HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence            344333 345799999999999998876521                                        479999999


Q ss_pred             hHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc-cC-hhHHHHHHHHHHhcccC--CcEEEEEE
Q 024008          140 DIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-IE-PEMRAAWAQKIKDFLKP--DGELITLM  213 (274)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~-~~-~~~~~~~l~~l~~~L~~--gG~l~~~~  213 (274)
                      +.+++.|++++...++.++++|.++|+.+..++.+||+|+++..+.. +. .+....+...+.+.|++  |+.+++..
T Consensus       267 ~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  344 (385)
T 3ldu_A          267 EESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT  344 (385)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence            99999999999988877789999999998766679999999988753 22 23455666667777766  88877776

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.20  E-value=9.5e-12  Score=105.78  Aligned_cols=115  Identities=13%  Similarity=0.084  Sum_probs=77.5

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeC----ChHHHHHHHHHhhcCCCCcceEEEEc-ccCCCC
Q 024008           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEI----SDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWC  170 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~----s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~  170 (274)
                      .+..+.+.. ..++.+|||+|||+|.++..+++. .+|+|+|+    ++.+++.+.  ....+ .++++++.+ |+....
T Consensus        70 KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~  145 (305)
T 2p41_A           70 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP  145 (305)
T ss_dssp             HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC
T ss_pred             HHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC
Confidence            344444433 334579999999999999999988 68999999    554332110  11111 156999999 887653


Q ss_pred             CCCCeeEEEeccccc--ccChhH--HHHHHHHHHhcccCCcEEEEEEccC
Q 024008          171 PTELFDLIFDYTFFC--AIEPEM--RAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~--~~~~~~--~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                       .++||+|++..++.  +...+.  ...++..+.++|+|||.+++..+..
T Consensus       146 -~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 -PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             -CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             -cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence             56899999987653  111111  1157888999999999988866544

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.18  E-value=1.1e-10  Score=96.23  Aligned_cols=87  Identities=15%  Similarity=0.153  Sum_probs=66.6

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-
Q 024008           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-  172 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-  172 (274)
                      ...+..++.... .++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.++++....   ++++++.+|+.+.... 
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCccc
Confidence            344455555543 34579999999999999999998899999999999999999998643   5799999999884332 


Q ss_pred             -CCeeEEEeccccc
Q 024008          173 -ELFDLIFDYTFFC  185 (274)
Q Consensus       173 -~~fD~v~~~~~~~  185 (274)
                       ..| .|+++..++
T Consensus        93 ~~~~-~vv~nlPy~  105 (244)
T 1qam_A           93 NQSY-KIFGNIPYN  105 (244)
T ss_dssp             SCCC-EEEEECCGG
T ss_pred             CCCe-EEEEeCCcc
Confidence             345 466665554

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.14  E-value=9.9e-10  Score=95.38  Aligned_cols=162  Identities=17%  Similarity=0.187  Sum_probs=110.9

Q ss_pred             CCeEEEEcCCcchhHHHhhC-----------------CCCeEEEEeCChHHHHHHHHHhhcCC-----------CCcceE
Q 024008          109 KGRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSLP-----------NAKFVS  160 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-----------------~~~~v~~iD~s~~~~~~a~~~~~~~~-----------~~~~v~  160 (274)
                      +.+|+|+|||+|.++..+..                 +..+|..-|+.....+..-+.++...           ...+.-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            36899999999999877621                 34689999988777666655554321           001122


Q ss_pred             EEE---cccCC-CCCCCCeeEEEecccccccCh------------------------------------hHHHHHHHHHH
Q 024008          161 FLK---ADFFT-WCPTELFDLIFDYTFFCAIEP------------------------------------EMRAAWAQKIK  200 (274)
Q Consensus       161 ~~~---~d~~~-~~~~~~fD~v~~~~~~~~~~~------------------------------------~~~~~~l~~l~  200 (274)
                      |+.   +.+.. .+|+++||+|+++.++|+++.                                    .++..+++..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333   34433 678899999999999999851                                    14566789999


Q ss_pred             hcccCCcEEEEEEccCCCC------------------------------------CCCCCcccCHHHHHHHHh-cCCCcE
Q 024008          201 DFLKPDGELITLMFPISDH------------------------------------VGGPPYKVSVSDYEEVLQ-PMGFQA  243 (274)
Q Consensus       201 ~~L~~gG~l~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~-~~Gf~~  243 (274)
                      +.|+|||++++...+....                                    ..-+.|+.+.+++.++++ +.||++
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            9999999999877654321                                    012455679999999998 589999


Q ss_pred             EEEeecccccCCccc--------hhHHHHhhhhhc
Q 024008          244 ISIVDNKLAIGPRKG--------REKLGRWKRSVR  270 (274)
Q Consensus       244 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  270 (274)
                      ..++....+.....+        -+.+..+.|+..
T Consensus       293 ~~le~~~~~~~~~~~~~~~~~~~g~~~a~~~Ra~~  327 (374)
T 3b5i_A          293 DKLVVYKGGSPLVVNEPDDASEVGRAFASSCRSVA  327 (374)
T ss_dssp             EEEEEEECCCCCCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCCccccccchhHHHHHHHHHHHHHhc
Confidence            988876544322211        255666666643

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.13  E-value=1.9e-10  Score=96.97  Aligned_cols=88  Identities=15%  Similarity=0.085  Sum_probs=71.1

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024008           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (274)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~  173 (274)
                      ..+..++.... .++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++....   ++++++.+|+.+ ..+..
T Consensus        37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~~  113 (295)
T 3gru_A           37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNKL  113 (295)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGGS
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcccC
Confidence            34445555443 35579999999999999999998889999999999999999998633   579999999988 34445


Q ss_pred             CeeEEEecccccc
Q 024008          174 LFDLIFDYTFFCA  186 (274)
Q Consensus       174 ~fD~v~~~~~~~~  186 (274)
                      .||.|+++..++.
T Consensus       114 ~fD~Iv~NlPy~i  126 (295)
T 3gru_A          114 DFNKVVANLPYQI  126 (295)
T ss_dssp             CCSEEEEECCGGG
T ss_pred             CccEEEEeCcccc
Confidence            7999998877653

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.12  E-value=1.6e-09  Score=92.11  Aligned_cols=141  Identities=11%  Similarity=0.106  Sum_probs=98.0

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024008           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  171 (274)
                      ...+..++.  ..++.+|||+|||+|..+..++.   ...+|+++|+++.+++.+++++...+. .+++++.+|+....+
T Consensus        91 s~l~~~~l~--~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~  167 (309)
T 2b9e_A           91 SCLPAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSP  167 (309)
T ss_dssp             GGHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCT
T ss_pred             HHHHHHHhC--CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCc
Confidence            344444554  45678999999999999998887   346999999999999999999988876 469999999987433


Q ss_pred             C----CCeeEEEecccccc---c---Ch---------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc
Q 024008          172 T----ELFDLIFDYTFFCA---I---EP---------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY  225 (274)
Q Consensus       172 ~----~~fD~v~~~~~~~~---~---~~---------~-------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~  225 (274)
                      .    .+||.|++......   +   ++         +       ....++....++++ ||+++....+...       
T Consensus       168 ~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~-------  239 (309)
T 2b9e_A          168 SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ-------  239 (309)
T ss_dssp             TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG-------
T ss_pred             cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh-------
Confidence            2    57999997533211   1   00         0       01346777777786 8988877654421       


Q ss_pred             ccCHHHHHHHHhcC-C-CcEEEE
Q 024008          226 KVSVSDYEEVLQPM-G-FQAISI  246 (274)
Q Consensus       226 ~~~~~~~~~~~~~~-G-f~~~~~  246 (274)
                      .-+.+.+.++++++ + |+.+.+
T Consensus       240 ~Ene~~v~~~l~~~~~~~~~~~~  262 (309)
T 2b9e_A          240 EENEDVVRDALQQNPGAFRLAPA  262 (309)
T ss_dssp             GGTHHHHHHHHTTSTTTEEECCC
T ss_pred             HHhHHHHHHHHHhCCCcEEEecc
Confidence            12456677777776 4 666543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.11  E-value=5.7e-10  Score=88.52  Aligned_cols=96  Identities=15%  Similarity=0.006  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC---------------
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW---------------  169 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---------------  169 (274)
                      +..+|||+||  |+.+..+++. +.+|+.+|.+++..+.|++++...++  .++++++.+|+.+.               
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            4689999998  5788888874 78999999999999999999999887  78999999996542               


Q ss_pred             ---------C-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          170 ---------C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       170 ---------~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                               . ..++||+|+.-+-       .....+..+.+.|+|||+|++-
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEET
T ss_pred             HHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEEe
Confidence                     1 2368999995432       2235566778999999999653

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.09  E-value=1.3e-10  Score=101.71  Aligned_cols=100  Identities=13%  Similarity=-0.024  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCCCC---CCCCeeEEEe
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWC---PTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~---~~~~fD~v~~  180 (274)
                      ++.+|||++||+|..++.++.  .| .+|+++|+++.+++.+++|+..+++.++ ++++.+|+....   ..++||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            457999999999999998887  45 4899999999999999999999988766 999999997632   2467999997


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .. +...     ..+++.+.+.|++||+++++.
T Consensus       132 DP-~g~~-----~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP-FGTP-----VPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC-SSCC-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC-CcCH-----HHHHHHHHHHhCCCCEEEEEe
Confidence            65 2211     347888899999999888876

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.07  E-value=2.1e-09  Score=88.81  Aligned_cols=84  Identities=8%  Similarity=0.019  Sum_probs=65.9

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----
Q 024008           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----  171 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  171 (274)
                      +..++... ..++.+|||||||+|..+..+++.+.+|+++|+++.+++.++++....   ++++++.+|+.+...     
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~   94 (255)
T 3tqs_A           18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ---KNITIYQNDALQFDFSSVKT   94 (255)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC---TTEEEEESCTTTCCGGGSCC
T ss_pred             HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC---CCcEEEEcchHhCCHHHhcc
Confidence            33344433 345679999999999999999998899999999999999999998652   579999999988422     


Q ss_pred             CCCeeEEEeccccc
Q 024008          172 TELFDLIFDYTFFC  185 (274)
Q Consensus       172 ~~~fD~v~~~~~~~  185 (274)
                      .++|| |+++..+.
T Consensus        95 ~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           95 DKPLR-VVGNLPYN  107 (255)
T ss_dssp             SSCEE-EEEECCHH
T ss_pred             CCCeE-EEecCCcc
Confidence            34688 66665554

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.07  E-value=7.2e-10  Score=92.40  Aligned_cols=96  Identities=14%  Similarity=0.034  Sum_probs=72.4

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--C
Q 024008           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--E  173 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~  173 (274)
                      .+..+++.. ..++ +|||||||+|..+..+++.+.+|+++|+++.+++.++++...    .+++++.+|+.+....  .
T Consensus        35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~~~  109 (271)
T 3fut_A           35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEEVP  109 (271)
T ss_dssp             HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGGSC
T ss_pred             HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhhcc
Confidence            344444433 3445 999999999999999999889999999999999999999863    4799999999874332  3


Q ss_pred             CeeEEEecccccccChhHHHHHHHH
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQK  198 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~  198 (274)
                      .+|.|+++..++ +..+....++..
T Consensus       110 ~~~~iv~NlPy~-iss~il~~ll~~  133 (271)
T 3fut_A          110 QGSLLVANLPYH-IATPLVTRLLKT  133 (271)
T ss_dssp             TTEEEEEEECSS-CCHHHHHHHHHH
T ss_pred             CccEEEecCccc-ccHHHHHHHhcC
Confidence            689999887766 443444444433

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.05  E-value=1.9e-11  Score=100.74  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-C-CCC
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-P-TEL  174 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~  174 (274)
                      +..++.... .++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++++...   .++++++.+|+.+.. + .++
T Consensus        18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~~~~~~   94 (245)
T 1yub_A           18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc---CCceEEEECChhhcCcccCCC
Confidence            344444443 3457999999999999999998889999999999999999887652   257999999998843 3 257


Q ss_pred             eeEEEecccccccChhHHHHHH--------------HHHHhcccCCcEEEEEE
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWA--------------QKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l--------------~~l~~~L~~gG~l~~~~  213 (274)
                      | .|+++..+.. .......++              +.+.++|+|||.+.+..
T Consensus        95 f-~vv~n~Py~~-~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           95 Y-KIVGNIPYHL-STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             E-EEEEECCSSS-CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             c-EEEEeCCccc-cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            8 6777665543 223333333              56889999999876643

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.04  E-value=3.1e-09  Score=92.39  Aligned_cols=142  Identities=11%  Similarity=0.106  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCcchhHHHhhC-------------------CCCeEEEEeCC-----------hHHHHHHHHHhhcCCCCcc
Q 024008          109 KGRALVPGCGTGYDVVAMAS-------------------PERYVVGLEIS-----------DIAIKKAEELSSSLPNAKF  158 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-------------------~~~~v~~iD~s-----------~~~~~~a~~~~~~~~~~~~  158 (274)
                      ..+|+|+||++|.++..+..                   +..+|+.-|+.           +...+.+++..   +...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~---g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN---GRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT---CCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc---cCCCC
Confidence            46899999999999876543                   12478888987           44333332221   11112


Q ss_pred             eEEEEcccCC----CCCCCCeeEEEecccccccChh-------------------------------------HHHHHHH
Q 024008          159 VSFLKADFFT----WCPTELFDLIFDYTFFCAIEPE-------------------------------------MRAAWAQ  197 (274)
Q Consensus       159 v~~~~~d~~~----~~~~~~fD~v~~~~~~~~~~~~-------------------------------------~~~~~l~  197 (274)
                      .-|+.+....    ++|.+++|+|+++.++|+++..                                     ++..+++
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4555554433    6788999999999999997421                                     1123367


Q ss_pred             HHHhcccCCcEEEEEEccCCCC--C----------------------------CCCCcccCHHHHHHHHhcCC-CcEEEE
Q 024008          198 KIKDFLKPDGELITLMFPISDH--V----------------------------GGPPYKVSVSDYEEVLQPMG-FQAISI  246 (274)
Q Consensus       198 ~l~~~L~~gG~l~~~~~~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~G-f~~~~~  246 (274)
                      ...+.|+|||++++...+....  .                            .-|.++.+.+|+.++++..| |++..+
T Consensus       210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l  289 (384)
T 2efj_A          210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL  289 (384)
T ss_dssp             HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred             HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence            7799999999999988766443  1                            12456679999999999985 888888


Q ss_pred             eeccccc
Q 024008          247 VDNKLAI  253 (274)
Q Consensus       247 ~~~~~~~  253 (274)
                      +......
T Consensus       290 e~~~~~~  296 (384)
T 2efj_A          290 ETFNAPY  296 (384)
T ss_dssp             EEEEEET
T ss_pred             EEEeecc
Confidence            7655433

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.03  E-value=4.2e-10  Score=98.35  Aligned_cols=99  Identities=15%  Similarity=-0.031  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC---------------CCCcceEEEEcccCCCC
Q 024008          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL---------------PNAKFVSFLKADFFTWC  170 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~---------------~~~~~v~~~~~d~~~~~  170 (274)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|+..+               ++. +++++.+|+....
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            5679999999999999988873  458999999999999999999877               654 3999999997632


Q ss_pred             --CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          171 --PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 --~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                        ..+.||+|+... +...     ..+++.+.+.|++||++++..
T Consensus       126 ~~~~~~fD~I~lDP-~~~~-----~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          126 AERHRYFHFIDLDP-FGSP-----MEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHSTTCEEEEEECC-SSCC-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCC-CCCH-----HHHHHHHHHhcCCCCEEEEEe
Confidence              135799999543 3321     367888999999999888765

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.03  E-value=9.5e-11  Score=97.21  Aligned_cols=79  Identities=14%  Similarity=0.064  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCCh-------HHHHHHHHHhhcCCCCcceEEEEcccCCCC---CC--CCe
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISD-------IAIKKAEELSSSLPNAKFVSFLKADFFTWC---PT--ELF  175 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~-------~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~--~~f  175 (274)
                      ++.+|||+|||+|..+..++..+.+|+++|+++       .+++.|+++...++..++++++.+|+.+..   ++  ++|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f  162 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP  162 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence            457999999999999999999889999999999       999999988766554456999999998732   22  689


Q ss_pred             eEEEecccccc
Q 024008          176 DLIFDYTFFCA  186 (274)
Q Consensus       176 D~v~~~~~~~~  186 (274)
                      |+|++...+.+
T Consensus       163 D~V~~dP~~~~  173 (258)
T 2r6z_A          163 DIVYLDPMYPE  173 (258)
T ss_dssp             SEEEECCCC--
T ss_pred             cEEEECCCCCC
Confidence            99999877655

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=99.02  E-value=3.4e-09  Score=91.39  Aligned_cols=161  Identities=14%  Similarity=0.164  Sum_probs=112.1

Q ss_pred             CeEEEEcCCcchhHHHhhCC------------------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCC
Q 024008          110 GRALVPGCGTGYDVVAMASP------------------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFT  168 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~------------------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~  168 (274)
                      .+|+|+||++|.+++.+...                  ..+|+.-|+.....+.+.+.++......+.-|+.   +.+..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            68999999999988655432                  3589999999888888887776421101234444   44443


Q ss_pred             -CCCCCCeeEEEecccccccCh-------------------------------hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          169 -WCPTELFDLIFDYTFFCAIEP-------------------------------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       169 -~~~~~~fD~v~~~~~~~~~~~-------------------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                       ++|.+++|+|+++.++|+++.                               .++..+++...+.|+|||++++...+.
T Consensus       133 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr  212 (359)
T 1m6e_X          133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence             788899999999999998742                               134566899999999999999877655


Q ss_pred             CCCC----------------------------------CCCCcccCHHHHHHHHhcCC-CcEEEEeecccccCCc-----
Q 024008          217 SDHV----------------------------------GGPPYKVSVSDYEEVLQPMG-FQAISIVDNKLAIGPR-----  256 (274)
Q Consensus       217 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~G-f~~~~~~~~~~~~~~~-----  256 (274)
                      ....                                  .-|.++.+.+|+.+.++..| |++..++.......+.     
T Consensus       213 ~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~~~~~~d  292 (359)
T 1m6e_X          213 RSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGD  292 (359)
T ss_dssp             SSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTT
T ss_pred             CCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeeccCcccchhh
Confidence            3320                                  12456678999999999996 5877776544333221     


Q ss_pred             ------cchhHHHHhhhhhc
Q 024008          257 ------KGREKLGRWKRSVR  270 (274)
Q Consensus       257 ------~~~~~~~~~~~~~~  270 (274)
                            ..-+.+..|.|+..
T Consensus       293 ~~~~~~~~g~~~a~~~Ra~~  312 (359)
T 1m6e_X          293 GGGSVEEEGYNVARCMRAVA  312 (359)
T ss_dssp             CCSSTTTTTTHHHHHHHHHH
T ss_pred             hhhhhhHhHhHhhhhhhhhc
Confidence                  11256777777643

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.99  E-value=6.4e-10  Score=97.56  Aligned_cols=88  Identities=20%  Similarity=0.133  Sum_probs=70.4

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC--CCCcceEEEEcccCCCCC--
Q 024008           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFTWCP--  171 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~--  171 (274)
                      ..+..+......++.+|||+|||+|..+..+++.+.+|+++|+++.+++.|++++...  ++ ++++++++|+.+..+  
T Consensus        81 e~vA~~~a~~l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~  159 (410)
T 3ll7_A           81 AVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLI  159 (410)
T ss_dssp             HHHHHHGGGGSCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhc
Confidence            3344443332234789999999999999999998899999999999999999999866  65 679999999987422  


Q ss_pred             -CCCeeEEEecccc
Q 024008          172 -TELFDLIFDYTFF  184 (274)
Q Consensus       172 -~~~fD~v~~~~~~  184 (274)
                       .++||+|++....
T Consensus       160 ~~~~fDvV~lDPPr  173 (410)
T 3ll7_A          160 KTFHPDYIYVDPAR  173 (410)
T ss_dssp             HHHCCSEEEECCEE
T ss_pred             cCCCceEEEECCCC
Confidence             3589999997554

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.97  E-value=1.3e-09  Score=100.35  Aligned_cols=100  Identities=22%  Similarity=0.206  Sum_probs=78.1

Q ss_pred             CeEEEEcCCcchhHHHhhC----CCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          110 GRALVPGCGTGYDVVAMAS----PER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      ..|||+|||+|.+....++    .+.  +|++||.++ +...+++....+++.++|+++.+|+.+...++++|+|++=..
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwM  437 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELL  437 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCC
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcC
Confidence            4799999999999544333    233  789999998 566788888888888999999999999777799999998544


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      =..+..+....++....+.|||||+++
T Consensus       438 G~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          438 GSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             BTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             cccccccCCHHHHHHHHHhcCCCcEEc
Confidence            333333334468888899999999976

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.94  E-value=4.5e-09  Score=96.06  Aligned_cols=108  Identities=14%  Similarity=0.064  Sum_probs=84.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC----C----------------CCeEEEEeCChHHHHHHHHHhhcCCCCc----ceEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS----P----------------ERYVVGLEISDIAIKKAEELSSSLPNAK----FVSFL  162 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~----~----------------~~~v~~iD~s~~~~~~a~~~~~~~~~~~----~v~~~  162 (274)
                      .++.+|||++||+|.++..+++    .                ..+++|+|+++.++..|+.++...+...    ++.+.
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~  247 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  247 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence            3457999999999999877764    1                1379999999999999999987766543    27899


Q ss_pred             EcccCCC--CCCCCeeEEEecccccccCh------------hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          163 KADFFTW--CPTELFDLIFDYTFFCAIEP------------EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       163 ~~d~~~~--~~~~~fD~v~~~~~~~~~~~------------~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+|....  ....+||+|+++.++.....            ..-..++.++.+.|+|||++.++..
T Consensus       248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            9998762  33568999999988765321            1123689999999999999888763

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.93  E-value=8.2e-10  Score=100.84  Aligned_cols=145  Identities=20%  Similarity=0.139  Sum_probs=99.4

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCC-----------------CCeEEEEeCChHHHHHHHHHhhcCCC
Q 024008           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP-----------------ERYVVGLEISDIAIKKAEELSSSLPN  155 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-----------------~~~v~~iD~s~~~~~~a~~~~~~~~~  155 (274)
                      +|......++........+|||.+||+|.++..+++.                 ...++|+|+++.++..|+.++...+.
T Consensus       229 TP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  308 (544)
T 3khk_A          229 TPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI  308 (544)
T ss_dssp             CCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC
Confidence            4444444444443333459999999999998776430                 45899999999999999999887776


Q ss_pred             CcceEEEEcccCCC--CCCCCeeEEEeccccccc-------------------------Chh--HHHHHHHHHHhcccCC
Q 024008          156 AKFVSFLKADFFTW--CPTELFDLIFDYTFFCAI-------------------------EPE--MRAAWAQKIKDFLKPD  206 (274)
Q Consensus       156 ~~~v~~~~~d~~~~--~~~~~fD~v~~~~~~~~~-------------------------~~~--~~~~~l~~l~~~L~~g  206 (274)
                      ..++.+..+|....  .+..+||+|+++.++..-                         ++.  .--.++.++.+.|+||
T Consensus       309 ~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g  388 (544)
T 3khk_A          309 DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPT  388 (544)
T ss_dssp             CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEE
T ss_pred             CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccC
Confidence            55555588887752  345789999999888641                         110  0125889999999999


Q ss_pred             cEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024008          207 GELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       207 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf  241 (274)
                      |++.++.........    ......+++.+.+.+.
T Consensus       389 Gr~aiVlP~g~L~~~----~~~~~~iRk~Lle~~~  419 (544)
T 3khk_A          389 GSMALLLANGSMSSN----TNNEGEIRKTLVEQDL  419 (544)
T ss_dssp             EEEEEEEETHHHHCC----GGGHHHHHHHHHHTTC
T ss_pred             ceEEEEecchhhhcC----cchHHHHHHHHHhCCc
Confidence            998877632210000    0135677777777665

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.92  E-value=5.8e-09  Score=98.14  Aligned_cols=108  Identities=14%  Similarity=0.117  Sum_probs=82.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--------------------------------------------CCeEEEEeCChHH
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--------------------------------------------ERYVVGLEISDIA  142 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--------------------------------------------~~~v~~iD~s~~~  142 (274)
                      .++..|||++||+|.+++.++..                                            ..+++|+|+++.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            35579999999999998876641                                            1479999999999


Q ss_pred             HHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCeeEEEecccccc-c-ChhHHHHHH---HHHHhcccCCcEEEEEEc
Q 024008          143 IKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDLIFDYTFFCA-I-EPEMRAAWA---QKIKDFLKPDGELITLMF  214 (274)
Q Consensus       143 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~v~~~~~~~~-~-~~~~~~~~l---~~l~~~L~~gG~l~~~~~  214 (274)
                      ++.|+.|+...++.+.++|.++|+.+..++   ++||+|+++.++.. + +......+.   .++.+.+.|||.+++...
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            999999999999888899999999874322   38999999988864 2 122333333   444555568999888763

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.88  E-value=4.1e-09  Score=89.17  Aligned_cols=75  Identities=19%  Similarity=0.119  Sum_probs=62.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---C---CCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---P---TELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~---~~~fD~v  178 (274)
                      .++.+|||+|||+|..+..+++.  +.+|+|+|+++.+++.|++++...+  ++++++++|+....   .   .++||.|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence            45689999999999999999883  6799999999999999999988765  57999999987632   1   1579999


Q ss_pred             Eeccc
Q 024008          179 FDYTF  183 (274)
Q Consensus       179 ~~~~~  183 (274)
                      ++...
T Consensus       103 l~D~g  107 (301)
T 1m6y_A          103 LMDLG  107 (301)
T ss_dssp             EEECS
T ss_pred             EEcCc
Confidence            97554

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.87  E-value=1.5e-09  Score=89.87  Aligned_cols=127  Identities=21%  Similarity=0.236  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC---------C-----CCeEEEEeCCh---HHHH-----------HHHHHhhcCC-----
Q 024008          108 PKGRALVPGCGTGYDVVAMAS---------P-----ERYVVGLEISD---IAIK-----------KAEELSSSLP-----  154 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~---------~-----~~~v~~iD~s~---~~~~-----------~a~~~~~~~~-----  154 (274)
                      ++.+|||+|+|+|.++..+++         +     ..+++++|..|   +.+.           .|+++...+.     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            446999999999999876532         2     14899999876   3333           5565544311     


Q ss_pred             -----C---CcceEEEEcccCCCCC---C---CCeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCC
Q 024008          155 -----N---AKFVSFLKADFFTWCP---T---ELFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDH  219 (274)
Q Consensus       155 -----~---~~~v~~~~~d~~~~~~---~---~~fD~v~~~~~~~~~~~~~-~~~~l~~l~~~L~~gG~l~~~~~~~~~~  219 (274)
                           +   ..+++++.+|+.+..+   .   ..||+|+.-..-..-.++. ...+++.+.++|+|||+++...      
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys------  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC------
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe------
Confidence                 1   1467899999876222   2   2799999643111111111 2568899999999999988633      


Q ss_pred             CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          220 VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                              ....+...+..+||.+..+..
T Consensus       214 --------aa~~vrr~L~~aGF~v~~~~g  234 (257)
T 2qy6_A          214 --------SAGFVRRGLQEAGFTMQKRKG  234 (257)
T ss_dssp             --------CBHHHHHHHHHHTEEEEEECC
T ss_pred             --------CCHHHHHHHHHCCCEEEeCCC
Confidence                    235788889999999876544

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.86  E-value=2.3e-09  Score=98.72  Aligned_cols=100  Identities=17%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             CeEEEEcCCcchhHHHhhC----CC-----------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---
Q 024008          110 GRALVPGCGTGYDVVAMAS----PE-----------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---  171 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~-----------~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---  171 (274)
                      ..|||+|||+|.+....++    .+           .+|++||.++.++...+.... +++.++|+++.+|+.+...   
T Consensus       411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccccc
Confidence            5799999999999643221    22           399999999988766666554 6677889999999998433   


Q ss_pred             ---CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024008          172 ---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       172 ---~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                         .+++|+|++=..=..++.+.....+..+.+.|+|||+++
T Consensus       490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence               689999998655333344445567777889999999876

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.82  E-value=1.1e-08  Score=84.33  Aligned_cols=83  Identities=7%  Similarity=0.085  Sum_probs=62.3

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-
Q 024008           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-  173 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-  173 (274)
                      .+..+++... .++.+|||+|||+|..+..+++.+ .+++++|+++.+++.++++ .    ..+++++.+|+.+..... 
T Consensus        19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~~~   93 (249)
T 3ftd_A           19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFCSL   93 (249)
T ss_dssp             HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGGGS
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChhHc
Confidence            3444555443 356799999999999999999985 7999999999999999887 2    257999999998843222 


Q ss_pred             --CeeEEEeccccc
Q 024008          174 --LFDLIFDYTFFC  185 (274)
Q Consensus       174 --~fD~v~~~~~~~  185 (274)
                        .+ .|+++..++
T Consensus        94 ~~~~-~vv~NlPy~  106 (249)
T 3ftd_A           94 GKEL-KVVGNLPYN  106 (249)
T ss_dssp             CSSE-EEEEECCTT
T ss_pred             cCCc-EEEEECchh
Confidence              33 566555544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.80  E-value=1.7e-08  Score=92.03  Aligned_cols=130  Identities=13%  Similarity=-0.016  Sum_probs=94.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-----CCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCC----CCCCCeeE
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTW----CPTELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-----~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----~~~~~fD~  177 (274)
                      ++.+|||.+||+|.++..+++.     ...++|+|+++.++..|+.++...+.. +++.+..+|....    ....+||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            4579999999999998777652     468999999999999999998777764 4688999998864    23578999


Q ss_pred             EEeccccccc-Ch------h--------------HHHHHHHHHHhccc-CCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024008          178 IFDYTFFCAI-EP------E--------------MRAAWAQKIKDFLK-PDGELITLMFPISDHVGGPPYKVSVSDYEEV  235 (274)
Q Consensus       178 v~~~~~~~~~-~~------~--------------~~~~~l~~l~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      |+++.++..- ..      +              .--.++.++.+.|+ +||++.++..+......     .....+++.
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~-----~~~~~iRk~  375 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRG-----NAEGTIRKA  375 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCC-----THHHHHHHH
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCC-----chhHHHHHH
Confidence            9999877421 00      0              00248899999999 99998877643211000     024667777


Q ss_pred             HhcCCCc
Q 024008          236 LQPMGFQ  242 (274)
Q Consensus       236 ~~~~Gf~  242 (274)
                      +.+.+.-
T Consensus       376 Lle~~~l  382 (542)
T 3lkd_A          376 LLEEGAI  382 (542)
T ss_dssp             HHHTTCE
T ss_pred             HHhCCce
Confidence            7776553

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.80  E-value=2.2e-08  Score=83.85  Aligned_cols=83  Identities=13%  Similarity=0.014  Sum_probs=61.3

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCe----EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024008           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERY----VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~----v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  172 (274)
                      +..++... ..++.+|||||||+|.++..+++.+..    |+++|+++.+++.++++.     ..+++++.+|+.+....
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGG
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChh
Confidence            33444433 345679999999999999999986665    999999999999999984     25799999999873321


Q ss_pred             C-------CeeEEEeccccc
Q 024008          173 E-------LFDLIFDYTFFC  185 (274)
Q Consensus       173 ~-------~fD~v~~~~~~~  185 (274)
                      .       ....|+++..+.
T Consensus       106 ~~~~~~~~~~~~vv~NlPY~  125 (279)
T 3uzu_A          106 SIARPGDEPSLRIIGNLPYN  125 (279)
T ss_dssp             GGSCSSSSCCEEEEEECCHH
T ss_pred             HhcccccCCceEEEEccCcc
Confidence            1       234566655544

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.78  E-value=2.7e-08  Score=83.22  Aligned_cols=107  Identities=15%  Similarity=0.143  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcC--C--CCcceEEEEcccCCCC--CCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSL--P--NAKFVSFLKADFFTWC--PTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~-~~~v~~iD~s~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~~--~~~~fD~v  178 (274)
                      ..+.+||-||.|.|..+..+++ + ..+|+.+|+++.+++.+++.++..  +  ..++++++.+|.....  ..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            4468999999999999999988 3 459999999999999999987531  1  2478999999999843  35689999


Q ss_pred             EecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +.-..=..-+..  ....+++.+.+.|+|||+++.-.
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            964321100000  11467899999999999998865

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.76  E-value=1.2e-08  Score=75.58  Aligned_cols=97  Identities=13%  Similarity=0.003  Sum_probs=68.0

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcc-hhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTG-YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--  172 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G-~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--  172 (274)
                      .+.+++.....++.+|||+|||.| ..+..|++ .|..|+++|+++.+++                +++.|++++...  
T Consensus        24 ~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y   87 (153)
T 2k4m_A           24 DLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEIY   87 (153)
T ss_dssp             HHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHHH
T ss_pred             HHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCccccc
Confidence            455555444455689999999999 69999997 9999999999987444                899999985543  


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      ..||+|++...-.     ++...+-++.+.+  |.-+++..++.
T Consensus        88 ~~~DLIYsirPP~-----El~~~i~~lA~~v--~adliI~pL~~  124 (153)
T 2k4m_A           88 RGAALIYSIRPPA-----EIHSSLMRVADAV--GARLIIKPLTG  124 (153)
T ss_dssp             TTEEEEEEESCCT-----TTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred             CCcCEEEEcCCCH-----HHHHHHHHHHHHc--CCCEEEEcCCC
Confidence            5899998765433     2233344444433  56666665544

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.72  E-value=3.5e-09  Score=87.47  Aligned_cols=78  Identities=15%  Similarity=0.058  Sum_probs=61.2

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CC-CCcceEEEEcccCCCCC--CCCeeEEE
Q 024008          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LP-NAKFVSFLKADFFTWCP--TELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-------~~-~~~~v~~~~~d~~~~~~--~~~fD~v~  179 (274)
                      .+|||+|||+|..+..++..|.+|+++|.++.+++.+++++..       ++ ...+++++.+|..+..+  ..+||+|+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~  169 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence            7999999999999999999888999999999876666655432       11 22479999999877322  24799999


Q ss_pred             eccccccc
Q 024008          180 DYTFFCAI  187 (274)
Q Consensus       180 ~~~~~~~~  187 (274)
                      +...+..-
T Consensus       170 lDP~y~~~  177 (258)
T 2oyr_A          170 LDPMFPHK  177 (258)
T ss_dssp             ECCCCCCC
T ss_pred             EcCCCCCc
Confidence            99888653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.69  E-value=1.3e-08  Score=83.95  Aligned_cols=74  Identities=11%  Similarity=-0.029  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCe--EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC------CCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERY--VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT------ELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~--v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~fD~v  178 (274)
                      .++.+|||||||+|..+. +.+ +.+  |+++|+++.+++.++++....   ++++++.+|+.+....      +..+.|
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~~~~~~v   94 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEKMGQPLRV   94 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHHHTSCEEE
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhcccCCceEE
Confidence            455799999999999999 654 456  999999999999999887543   4799999999874221      234678


Q ss_pred             Eeccccc
Q 024008          179 FDYTFFC  185 (274)
Q Consensus       179 ~~~~~~~  185 (274)
                      +++..+.
T Consensus        95 vsNlPY~  101 (252)
T 1qyr_A           95 FGNLPYN  101 (252)
T ss_dssp             EEECCTT
T ss_pred             EECCCCC
Confidence            8776654

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.62  E-value=2.4e-07  Score=86.79  Aligned_cols=137  Identities=10%  Similarity=0.066  Sum_probs=89.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-----CCeEEEEeCChHHHHHH--HHHhhcCCCC---cceEEEEcccCC--CCCCCCe
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKA--EELSSSLPNA---KFVSFLKADFFT--WCPTELF  175 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-----~~~v~~iD~s~~~~~~a--~~~~~~~~~~---~~v~~~~~d~~~--~~~~~~f  175 (274)
                      ++.+|||+|||+|.++..+++.     ..+++|+|+++.++..|  +.++..+...   ....+...|+..  .....+|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            4679999999999999988762     24799999999999999  6665442221   123556666665  2245689


Q ss_pred             eEEEecccccc-cC-hh-------------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC
Q 024008          176 DLIFDYTFFCA-IE-PE-------------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS  228 (274)
Q Consensus       176 D~v~~~~~~~~-~~-~~-------------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~  228 (274)
                      |+|+++.++.. .. +.                         ....++.++.+.|++||++.++.........+    ..
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg----~~  476 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQG----NE  476 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCS----HH
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCC----hH
Confidence            99999998843 11 11                         12347888999999999988877332110000    01


Q ss_pred             HHHHHHHHhcCCCcEEEEeec
Q 024008          229 VSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       229 ~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ...+.+.+.+. +.+..+...
T Consensus       477 ~kkLRk~LLe~-~~I~aIIdL  496 (878)
T 3s1s_A          477 SKAFREFLVGN-FGLEHIFLY  496 (878)
T ss_dssp             HHHHHHHHTTT-TCEEEEEEC
T ss_pred             HHHHHHHHHhC-CCeEEEEEC
Confidence            45677766654 344444443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.50  E-value=3e-07  Score=76.75  Aligned_cols=125  Identities=12%  Similarity=0.027  Sum_probs=90.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-------CCCeEEEEeCCh--------------------------HHHHHHHHHhhcC
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-------PERYVVGLEISD--------------------------IAIKKAEELSSSL  153 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-------~~~~v~~iD~s~--------------------------~~~~~a~~~~~~~  153 (274)
                      ..++.|||+|+..|..+..++.       ++.+++++|...                          ..++.+++++...
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            4568999999999999988765       267899999642                          1467789999888


Q ss_pred             CC-CcceEEEEcccCCCC---CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH
Q 024008          154 PN-AKFVSFLKADFFTWC---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV  229 (274)
Q Consensus       154 ~~-~~~v~~~~~d~~~~~---~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~  229 (274)
                      ++ .++++++.+|+.+..   +.++||+|+.-.-.    ......+++.+...|+|||+|++-++..        +.-..
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~pGGiIv~DD~~~--------~~G~~  252 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSVGGYVIVDDYMM--------CPPCK  252 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEEEEEEEESSCTT--------CHHHH
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCCCEEEEEcCCCC--------CHHHH
Confidence            87 388999999997732   34689999954321    1234578899999999999988866421        11135


Q ss_pred             HHHHHHHhcCCCcE
Q 024008          230 SDYEEVLQPMGFQA  243 (274)
Q Consensus       230 ~~~~~~~~~~Gf~~  243 (274)
                      .-+.++.+..|+..
T Consensus       253 ~Av~Ef~~~~~i~~  266 (282)
T 2wk1_A          253 DAVDEYRAKFDIAD  266 (282)
T ss_dssp             HHHHHHHHHTTCCS
T ss_pred             HHHHHHHHhcCCce
Confidence            56677777777553

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.50  E-value=2.6e-07  Score=79.76  Aligned_cols=131  Identities=18%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCC-------CCcceEEEEcccCCCC-----CCCC
Q 024008          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP-------NAKFVSFLKADFFTWC-----PTEL  174 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~-------~~~~v~~~~~d~~~~~-----~~~~  174 (274)
                      ++.+||=||.|.|..+..+++ +..+++.+|+++.+++.+++.++...       ..++++++.+|.....     ..++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            457999999999999999988 55689999999999999999875421       1246899999987632     3468


Q ss_pred             eeEEEeccccc-------ccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008          175 FDLIFDYTFFC-------AIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       175 fD~v~~~~~~~-------~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      ||+|+.-..-.       .... --...+++.+.+.|+|||+++.-.-.+       .+.-....+.+.+++. |..+.+
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~-------~~~~~~~~i~~tl~~v-F~~v~~  356 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV-------NLTEALSLYEEQLGRL-YCPVEF  356 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET-------TCHHHHHHHHHHHTTS-SSCEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC-------cchhHHHHHHHHHHHh-CCcceE
Confidence            99999642211       0111 123577899999999999988754222       1111245666777776 444443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.46  E-value=1.5e-06  Score=71.34  Aligned_cols=121  Identities=17%  Similarity=0.112  Sum_probs=74.7

Q ss_pred             CccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-
Q 024008           93 QPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-  168 (274)
Q Consensus        93 ~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-  168 (274)
                      ...-.+.++.+... .++.+|||+|||+|.++..+++. +. .++++|+.-......... ...+  .++..+..++.. 
T Consensus        58 RaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv~  134 (277)
T 3evf_A           58 RGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDIH  134 (277)
T ss_dssp             THHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCTT
T ss_pred             cHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEeccceeh
Confidence            34455666665543 34579999999999999988763 44 788888874321000000 0001  134445555432 


Q ss_pred             CCCCCCeeEEEeccccc----ccChhHHHHHHHHHHhcccCC-cEEEEEEccC
Q 024008          169 WCPTELFDLIFDYTFFC----AIEPEMRAAWAQKIKDFLKPD-GELITLMFPI  216 (274)
Q Consensus       169 ~~~~~~fD~v~~~~~~~----~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~~~  216 (274)
                      ..+.++||+|++..+..    ..+....-.+++.+.++|+|| |.+++-.|.+
T Consensus       135 ~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p  187 (277)
T 3evf_A          135 RLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP  187 (277)
T ss_dssp             TSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             hcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence            34567899999987665    222111123468889999999 9999987763

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.40  E-value=1.6e-06  Score=71.74  Aligned_cols=82  Identities=16%  Similarity=0.104  Sum_probs=64.4

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---
Q 024008           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---  169 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---  169 (274)
                      .....+.+.+.  ..+++.+||++||.|..+..+++.+.+|+|+|.++.+++.|++ +..    ++++++.+|+.+.   
T Consensus         9 VLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~   81 (285)
T 1wg8_A            9 VLYQEALDLLA--VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRH   81 (285)
T ss_dssp             TTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHH
T ss_pred             HHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHH
Confidence            33344444443  4567899999999999999999888899999999999999998 644    4799999999873   


Q ss_pred             ---CCCCCeeEEEec
Q 024008          170 ---CPTELFDLIFDY  181 (274)
Q Consensus       170 ---~~~~~fD~v~~~  181 (274)
                         ...+++|.|++.
T Consensus        82 L~~~g~~~vDgIL~D   96 (285)
T 1wg8_A           82 LAALGVERVDGILAD   96 (285)
T ss_dssp             HHHTTCSCEEEEEEE
T ss_pred             HHHcCCCCcCEEEeC
Confidence               122579999964

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.38  E-value=2.2e-06  Score=74.04  Aligned_cols=126  Identities=13%  Similarity=0.081  Sum_probs=90.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCC-----CcceEEEEcccCCC--CCCCCee
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPN-----AKFVSFLKADFFTW--CPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~--~~~~~fD  176 (274)
                      ..++.+|||+.+|.|.=+..++..+  ..++++|+++..+...++++...+.     ..++.+...|....  ...+.||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            5667899999999999998888744  3799999999999999988865432     24688888888763  3457899


Q ss_pred             EEEecccccc---------------cChhH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024008          177 LIFDYTFFCA---------------IEPEM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE  234 (274)
Q Consensus       177 ~v~~~~~~~~---------------~~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .|++-.....               ..+..       -..++....+.|||||+|+.++.+....       -+.+.+..
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~-------ENE~vV~~  298 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL-------QNEYVVQG  298 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT-------TTHHHHHH
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh-------hCHHHHHH
Confidence            9997433211               11111       1467888999999999999888766432       13455555


Q ss_pred             HHhc
Q 024008          235 VLQP  238 (274)
Q Consensus       235 ~~~~  238 (274)
                      +++.
T Consensus       299 ~L~~  302 (359)
T 4fzv_A          299 AIEL  302 (359)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5554

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.36  E-value=3.6e-06  Score=72.32  Aligned_cols=125  Identities=14%  Similarity=0.083  Sum_probs=81.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+||++|.++..+++.|.+|++||+.+- -...    ...   ++|+++.+|.+...+ .++||+|+|-.+.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l-~~~l----~~~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPM-AQSL----MDT---GQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCC-CHHH----HTT---TCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhc-Chhh----ccC---CCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            456789999999999999999999999999998642 1111    111   579999999998554 4689999987664


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      .   +......+.++......++.++............  ..-....+.+.|+.+||..
T Consensus       281 ~---p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~--l~~~~~~i~~~l~~~g~~~  334 (375)
T 4auk_A          281 K---PAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEE--VSHNLAYIQAQLDEHGINA  334 (375)
T ss_dssp             C---HHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHH--HHHHHHHHHHHHHHTTCCE
T ss_pred             C---hHHhHHHHHHHHhccccceEEEEEEecccchHHH--HHHHHHHHHHHHHhcCcch
Confidence            3   2333344455444444456666665443211000  0012456677888888863

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.23  E-value=6.2e-06  Score=75.11  Aligned_cols=121  Identities=18%  Similarity=0.178  Sum_probs=82.9

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC----C-----------CCeEEEEeCChHHHHHHHHHhhcCCCC
Q 024008           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----P-----------ERYVVGLEISDIAIKKAEELSSSLPNA  156 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~----~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~~  156 (274)
                      +|...+.-+.+.. ..++.+|+|..||+|.++..+.+    .           ...++|+|+++.+...|+-+..-.+. 
T Consensus       201 TP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~-  279 (530)
T 3ufb_A          201 TPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL-  279 (530)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC-
T ss_pred             CcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC-
Confidence            4444444444433 34456999999999999876653    1           24699999999999999988765554 


Q ss_pred             cceEEEEcccCCC-----CCCCCeeEEEecccccccCh--------------hHHHHHHHHHHhccc-------CCcEEE
Q 024008          157 KFVSFLKADFFTW-----CPTELFDLIFDYTFFCAIEP--------------EMRAAWAQKIKDFLK-------PDGELI  210 (274)
Q Consensus       157 ~~v~~~~~d~~~~-----~~~~~fD~v~~~~~~~~~~~--------------~~~~~~l~~l~~~L~-------~gG~l~  210 (274)
                      +..++..+|....     ....+||+|+++.+|..-..              ..-..++.++.+.|+       +||++.
T Consensus       280 ~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~a  359 (530)
T 3ufb_A          280 EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAA  359 (530)
T ss_dssp             SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEE
T ss_pred             ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEE
Confidence            2356777877642     12357999999999853211              111356788888886       699988


Q ss_pred             EEEc
Q 024008          211 TLMF  214 (274)
Q Consensus       211 ~~~~  214 (274)
                      ++..
T Consensus       360 vVlP  363 (530)
T 3ufb_A          360 VVVP  363 (530)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7764

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.21  E-value=7.5e-07  Score=73.30  Aligned_cols=120  Identities=18%  Similarity=0.107  Sum_probs=73.9

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccC
Q 024008           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFF  167 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~  167 (274)
                      ...-.+.++.+.. ..++.+|||+|||.|.++..+++ .+. .++|+|+.......+... ...+  .++.....  |+.
T Consensus        74 RAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~  150 (282)
T 3gcz_A           74 RGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVF  150 (282)
T ss_dssp             THHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGG
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchh
Confidence            3344555555544 34557999999999999998875 444 789999976422111110 0011  22333332  333


Q ss_pred             CCCCCCCeeEEEeccccc----ccChhHHHHHHHHHHhcccCC--cEEEEEEccC
Q 024008          168 TWCPTELFDLIFDYTFFC----AIEPEMRAAWAQKIKDFLKPD--GELITLMFPI  216 (274)
Q Consensus       168 ~~~~~~~fD~v~~~~~~~----~~~~~~~~~~l~~l~~~L~~g--G~l~~~~~~~  216 (274)
                       ..+.+++|+|++..+..    ..+....-.+++-+.++|+||  |.+++-.|.+
T Consensus       151 -~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p  204 (282)
T 3gcz_A          151 -NMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP  204 (282)
T ss_dssp             -GSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred             -hcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence             33457899999987766    122111123577778999999  9999988753

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.14  E-value=4.3e-06  Score=70.59  Aligned_cols=61  Identities=23%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      .+...+..++.....++..|||++||+|..+..+++.|.+++|+|+++.+++.|++++...
T Consensus       220 ~p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          220 FPLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             SCHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            3456667777665667789999999999999999999999999999999999999998653

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.10  E-value=2.4e-05  Score=65.66  Aligned_cols=126  Identities=19%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             CCeEEEEcCCcchhHHHhh------CCCC--eEEEEeCCh------------HHHHHHHHHhhcC-CCCcceEEEEcccC
Q 024008          109 KGRALVPGCGTGYDVVAMA------SPER--YVVGLEISD------------IAIKKAEELSSSL-PNAKFVSFLKADFF  167 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~------~~~~--~v~~iD~s~------------~~~~~a~~~~~~~-~~~~~v~~~~~d~~  167 (274)
                      .-+|||+|-|+|.+.....      .+..  +++.+|..+            +.........+.. +..-.+++..+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            3589999999999864322      1333  567777521            1122222222211 11124567888887


Q ss_pred             CC---CCCCCeeEEEecccccccChhHH-HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008          168 TW---CPTELFDLIFDYTFFCAIEPEMR-AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       168 ~~---~~~~~fD~v~~~~~~~~~~~~~~-~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      +.   ....+||+|+.-+.-..-.++.. ..++.+++++++|||.+...+              ....++..|+++||.+
T Consensus       177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt--------------aag~VRR~L~~aGF~V  242 (308)
T 3vyw_A          177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS--------------SSLSVRKSLLTLGFKV  242 (308)
T ss_dssp             HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC--------------CCHHHHHHHHHTTCEE
T ss_pred             HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe--------------CcHHHHHHHHHCCCEE
Confidence            62   23357999996432111122221 578999999999999988755              5678999999999999


Q ss_pred             EEEee
Q 024008          244 ISIVD  248 (274)
Q Consensus       244 ~~~~~  248 (274)
                      .++.-
T Consensus       243 ~k~~G  247 (308)
T 3vyw_A          243 GSSRE  247 (308)
T ss_dssp             EEEEC
T ss_pred             EecCC
Confidence            87764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.99  E-value=2.2e-05  Score=65.05  Aligned_cols=118  Identities=23%  Similarity=0.232  Sum_probs=70.4

Q ss_pred             cHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC-CC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCCCC
Q 024008           95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP-ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWC  170 (274)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~-~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~  170 (274)
                      .-.+.++.+.. ..++.+|||+||++|.++..+++. +. .|+|+|+.......... ....+. +-+.+..+ |+.. .
T Consensus        67 a~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~-l  143 (300)
T 3eld_A           67 AAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFT-M  143 (300)
T ss_dssp             HHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTT-S
T ss_pred             HHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeee-c
Confidence            34444444433 345679999999999999999973 44 78899986532100000 000010 12333322 3332 3


Q ss_pred             CCCCeeEEEeccccc----ccChhHHHHHHHHHHhcccCC-cEEEEEEcc
Q 024008          171 PTELFDLIFDYTFFC----AIEPEMRAAWAQKIKDFLKPD-GELITLMFP  215 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~----~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~~  215 (274)
                      ..+++|+|++..+..    .++......+++-+.++|+|| |.+++-.|.
T Consensus       144 ~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          144 PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            357899999976655    111111124477778999999 999998876

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.96  E-value=7e-05  Score=61.85  Aligned_cols=119  Identities=18%  Similarity=0.151  Sum_probs=76.1

Q ss_pred             ccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCCC
Q 024008           94 PAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTW  169 (274)
Q Consensus        94 ~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~  169 (274)
                      ..-.+..+.+.. ..++++|||+||++|.++.+.+. .+. .|+|+|+...--+.-+ ..+..++ +-+.|..+ |+...
T Consensus        79 ~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv~~l  156 (321)
T 3lkz_A           79 GTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDVFYR  156 (321)
T ss_dssp             HHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCTTSS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCHhhC
Confidence            344455555443 34557999999999999997776 555 7999999654111000 0011222 23788887 88765


Q ss_pred             CCCCCeeEEEecccccccChh-----HHHHHHHHHHhcccCC-cEEEEEEccC
Q 024008          170 CPTELFDLIFDYTFFCAIEPE-----MRAAWAQKIKDFLKPD-GELITLMFPI  216 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~~~~~-----~~~~~l~~l~~~L~~g-G~l~~~~~~~  216 (274)
                      .+ .++|+|+|-.. ..-+..     ..-.+|+-+.++|++| |-+++-.+.+
T Consensus       157 ~~-~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          157 PS-ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             CC-CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CC-CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            54 67999998655 322211     1124778888999999 8888876655

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.95  E-value=2.7e-05  Score=62.27  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=76.8

Q ss_pred             cHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCCCC
Q 024008           95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWC  170 (274)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~  170 (274)
                      .-.+.++.+.. ..++++|||+||++|.++.+.+. .+. +|+|+|+-..-.+.-+ ..+..|+ +.++|..+ |++...
T Consensus        64 ~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gw-n~v~fk~gvDv~~~~  141 (267)
T 3p8z_A           64 SAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGW-NIVKLMSGKDVFYLP  141 (267)
T ss_dssp             HHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTT-TSEEEECSCCGGGCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCc-CceEEEeccceeecC
Confidence            33444444433 44567999999999999997776 454 7999999764221100 1122333 46999999 987644


Q ss_pred             CCCCeeEEEecccccccCh----hHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          171 PTELFDLIFDYTFFCAIEP----EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      + .++|+|+|-..-..-.+    ...-.+++-+.++|++ |-+++-.+.+.
T Consensus       142 ~-~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py  190 (267)
T 3p8z_A          142 P-EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY  190 (267)
T ss_dssp             C-CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred             C-ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence            4 67999998755432221    1113477888899998 77777665553

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.93  E-value=0.00019  Score=58.22  Aligned_cols=111  Identities=18%  Similarity=0.114  Sum_probs=66.7

Q ss_pred             HHHHHhc-CCCCCCeEEEEcCCcchhHHHhhCC-CC-eEEEEeCChHHHHHHHHHhhcCCCCcc---eEEEEc-ccCCCC
Q 024008           98 IVHLHQS-GALPKGRALVPGCGTGYDVVAMASP-ER-YVVGLEISDIAIKKAEELSSSLPNAKF---VSFLKA-DFFTWC  170 (274)
Q Consensus        98 ~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~---v~~~~~-d~~~~~  170 (274)
                      +.++-+. +..++.+|||+||+.|.++.+.++. +. .|.|.++....     ...+.......   +.|.++ |++...
T Consensus        62 L~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-----~~~P~~~~~~Gv~~i~~~~G~Df~~~~  136 (269)
T 2px2_A           62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-----HEEPMLMQSYGWNIVTMKSGVDVFYKP  136 (269)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-----SCCCCCCCSTTGGGEEEECSCCGGGSC
T ss_pred             HHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-----ccCCCcccCCCceEEEeeccCCccCCC
Confidence            4444333 3456789999999999999999884 22 44454443321     00111100012   355557 998743


Q ss_pred             CCCCeeEEEecccccccCh---hH--HHHHHHHHHhcccCCc-EEEEEEcc
Q 024008          171 PTELFDLIFDYTFFCAIEP---EM--RAAWAQKIKDFLKPDG-ELITLMFP  215 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~---~~--~~~~l~~l~~~L~~gG-~l~~~~~~  215 (274)
                       ..++|+|+|-..-. -..   +.  .-.+++-+.++|+||| -+++=.|.
T Consensus       137 -~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          137 -SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             -CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             -CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence             45799999976543 211   11  1125677779999999 88887765

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.89  E-value=0.00026  Score=60.55  Aligned_cols=141  Identities=12%  Similarity=0.161  Sum_probs=100.4

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC--------------------C
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP--------------------N  155 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~--------------------~  155 (274)
                      +.+++..  .+...|+.+|||.......+..  ++..++-+|. |++++.-++.+...+                    .
T Consensus        89 v~~fl~~--~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~  165 (334)
T 1rjd_A           89 ILEFLVA--NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID  165 (334)
T ss_dssp             HHHHHHH--CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHH--CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccC
Confidence            4444442  3347899999999999988876  4567777887 888887777765531                    1


Q ss_pred             CcceEEEEcccCCC---------C-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC----CC--
Q 024008          156 AKFVSFLKADFFTW---------C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS----DH--  219 (274)
Q Consensus       156 ~~~v~~~~~d~~~~---------~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~----~~--  219 (274)
                      +++..++.+|+.+.         . ..+...++++-+++.+++++....+++.+.+.. |+|.+++.+.-..    +.  
T Consensus       166 ~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg  244 (334)
T 1rjd_A          166 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFG  244 (334)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHH
T ss_pred             CCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHH
Confidence            35789999999871         1 235678999999999999999999999999877 6777765553222    10  


Q ss_pred             --------C-CCCCc-----ccCHHHHHHHHhcCCCc
Q 024008          220 --------V-GGPPY-----KVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       220 --------~-~~~~~-----~~~~~~~~~~~~~~Gf~  242 (274)
                              . .+.++     ..+.++..+.|.++||.
T Consensus       245 ~~m~~~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          245 AIMQSNLKESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHHHHHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             HHHHHHhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence                    0 11111     23788899999999996

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.82  E-value=3.6e-05  Score=63.56  Aligned_cols=63  Identities=16%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC
Q 024008           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~  154 (274)
                      ..+...+..++.....++..|||..||+|..+....+.|.+++|+|+++..++.+++++...+
T Consensus       196 ~~p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          196 PKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CCCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            344566667776656778899999999999999999999999999999999999999987553

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.79  E-value=0.0013  Score=55.61  Aligned_cols=135  Identities=7%  Similarity=-0.006  Sum_probs=99.8

Q ss_pred             CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCC---------CCCCCeeE
Q 024008          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW---------CPTELFDL  177 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~---------~~~~~fD~  177 (274)
                      ..|+++|||-=.....+.. .+.+++-+| .|.+++..++.+...+  -..+..++.+|+.+.         ...+..-+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~  182 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  182 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEE
Confidence            5799999998777666664 357899999 5999999998886432  136788999999751         11234567


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------------CCC-------CCccc--C-HHHH
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------------VGG-------PPYKV--S-VSDY  232 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---------------~~~-------~~~~~--~-~~~~  232 (274)
                      +++-++++|++++....+++.+...+.||+.+++........               ..+       .++..  + .+++
T Consensus       183 ~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~  262 (310)
T 2uyo_A          183 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAVV  262 (310)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCCH
T ss_pred             EEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChHHH
Confidence            888899999999888999999999999999988876554311               112       12222  5 7899


Q ss_pred             HHHHhcCCCcEEE
Q 024008          233 EEVLQPMGFQAIS  245 (274)
Q Consensus       233 ~~~~~~~Gf~~~~  245 (274)
                      .+.|.++||+.+.
T Consensus       263 ~~~f~~~G~~~~~  275 (310)
T 2uyo_A          263 ADWLNRHGWRATA  275 (310)
T ss_dssp             HHHHTTTTEEEEE
T ss_pred             HHHHHHCcCcccc
Confidence            9999999998873

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.65  E-value=7.4e-05  Score=61.80  Aligned_cols=124  Identities=15%  Similarity=0.067  Sum_probs=88.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEEEecc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~v~~~~  182 (274)
                      .+..+||+-+|||.+++.+.+.+.+++.+|.++..+...++++...   .+++++..|...     ..+..+||+|+.-.
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~---~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN---KKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT---SCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC---CcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            3567999999999999999997779999999999999999998653   579999999765     23445799999888


Q ss_pred             cccccChhHHHHHHHHHHh--cccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          183 FFCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~--~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      .+..-  +....+++.+.+  .+.++|++++-- +...       .-..+.+.+.++..|.+..
T Consensus       168 PYe~k--~~~~~vl~~L~~~~~r~~~Gi~v~WY-Pi~~-------~~~~~~~~~~l~~~~~~~l  221 (283)
T 2oo3_A          168 SYERK--EEYKEIPYAIKNAYSKFSTGLYCVWY-PVVN-------KAWTEQFLRKMREISSKSV  221 (283)
T ss_dssp             CCCST--THHHHHHHHHHHHHHHCTTSEEEEEE-EESS-------HHHHHHHHHHHHHHCSSEE
T ss_pred             CCCCC--cHHHHHHHHHHHhCccCCCeEEEEEE-eccc-------hHHHHHHHHHHHhcCCCeE
Confidence            87732  244555665655  456788776632 2111       0134556666666666333

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.61  E-value=0.00012  Score=62.90  Aligned_cols=129  Identities=16%  Similarity=0.047  Sum_probs=81.3

Q ss_pred             CeEEEEcCCcchhHHHhhCCC--C-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC----CCeeEEEecc
Q 024008          110 GRALVPGCGTGYDVVAMASPE--R-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----ELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~--~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~v~~~~  182 (274)
                      .+|+|+.||.|.+...+...|  + .+.++|+++.+++..+.|.+.      ..++.+|+.+....    ..+|+++...
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            589999999999999998877  3 699999999999999999843      45778888774321    2689999987


Q ss_pred             cccccCh--------hHHHHHHH---HHHhccc--CCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          183 FFCAIEP--------EMRAAWAQ---KIKDFLK--PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       183 ~~~~~~~--------~~~~~~l~---~l~~~L~--~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ....++.        +.+..++.   ++.+.++  |.  +++.+....-.     ..-+...+.+.|++.||.+....-.
T Consensus        77 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~-----~~~~~~~i~~~l~~~GY~v~~~vl~  149 (343)
T 1g55_A           77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFE-----VSSTRDLLIQTIENCGFQYQEFLLS  149 (343)
T ss_dssp             C------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGG-----GSHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred             CCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCcccc-----CHHHHHHHHHHHHHCCCeeEEEEEE
Confidence            7555432        11222333   3444445  54  33333211100     0124678889999999987664333


Q ss_pred             cc
Q 024008          250 KL  251 (274)
Q Consensus       250 ~~  251 (274)
                      ..
T Consensus       150 a~  151 (343)
T 1g55_A          150 PT  151 (343)
T ss_dssp             GG
T ss_pred             HH
Confidence            33

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.57  E-value=0.00066  Score=59.01  Aligned_cols=123  Identities=12%  Similarity=-0.058  Sum_probs=81.4

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---------CCCCeeEEE
Q 024008          110 GRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---------PTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~fD~v~  179 (274)
                      .+++|+-||.|.++..+.+.|++ +.++|+++.+++..+.|.+      +..++.+|+.+..         ....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            57999999999999999888885 6699999999999998873      4667888887642         245799999


Q ss_pred             ecccccccCh-------hHHHHHH---HHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008          180 DYTFFCAIEP-------EMRAAWA---QKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       180 ~~~~~~~~~~-------~~~~~~l---~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      .......++.       +.+..++   -++.+.++|.  +++.+....-..  .......+.+. .|++.||.+
T Consensus        77 ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~--~~v~ENV~gl~s--~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           77 GGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL--FFLAENVPGIMQ--EKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             ECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCS--EEEEEECTTTTC--GGGHHHHHHHH-HHHHTTEEE
T ss_pred             ecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCC--EEEEecchHhhc--cCcHHHHHHHH-HHHcCCCcc
Confidence            8877655531       2222232   3344455663  444442221110  00111245666 888999988

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.48  E-value=0.00069  Score=57.37  Aligned_cols=71  Identities=18%  Similarity=0.106  Sum_probs=56.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC----CCCe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP----TELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~----~~~f  175 (274)
                      ..+++.++|..||.|..+..+++   +..+|+|+|.++.+++.++ ++  .  .++++++.+++.+.   ..    .+++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--~~Rv~lv~~nF~~l~~~L~~~g~~~~v  129 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--DPRFSIIHGPFSALGEYVAERDLIGKI  129 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--CTTEEEEESCGGGHHHHHHHTTCTTCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--CCcEEEEeCCHHHHHHHHHhcCCCCcc
Confidence            35678999999999999999987   3469999999999999995 44  1  36899999998772   11    1369


Q ss_pred             eEEEec
Q 024008          176 DLIFDY  181 (274)
Q Consensus       176 D~v~~~  181 (274)
                      |.|+..
T Consensus       130 DgILfD  135 (347)
T 3tka_A          130 DGILLD  135 (347)
T ss_dssp             EEEEEE
T ss_pred             cEEEEC
Confidence            999974

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.39  E-value=0.0018  Score=53.50  Aligned_cols=126  Identities=17%  Similarity=0.118  Sum_probs=80.4

Q ss_pred             HHHHHhcC--C-CCCCeEEEEcC------CcchhHH-HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC
Q 024008           98 IVHLHQSG--A-LPKGRALVPGC------GTGYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF  167 (274)
Q Consensus        98 ~~~~~~~~--~-~~~~~vLDiG~------G~G~~~~-~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  167 (274)
                      +.+++...  . ..+++|||+|+      -.|.... .+...|..++++|+.+-.         .    +.-.++++|+.
T Consensus        96 lcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~---------s----da~~~IqGD~~  162 (344)
T 3r24_A           96 LCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFV---------S----DADSTLIGDCA  162 (344)
T ss_dssp             HHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCB---------C----SSSEEEESCGG
T ss_pred             HHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccc---------c----CCCeEEEcccc
Confidence            45555432  2 23479999996      5666432 222245799999997731         1    11255999987


Q ss_pred             CCCCCCCeeEEEeccccc---ccCh------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024008          168 TWCPTELFDLIFDYTFFC---AIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       168 ~~~~~~~fD~v~~~~~~~---~~~~------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                      ......+||+|++-.+-.   +.+.      ...+.+++-+.+.|+|||-+++=.|...          ..+++.++.+ 
T Consensus       163 ~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs----------g~~~L~~lrk-  231 (344)
T 3r24_A          163 TVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------WNADLYKLMG-  231 (344)
T ss_dssp             GEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----------CCHHHHHHHT-
T ss_pred             ccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC----------CHHHHHHHHh-
Confidence            755568899999864421   1111      2456777888999999999999776443          1245555554 


Q ss_pred             CCCcEEEEee
Q 024008          239 MGFQAISIVD  248 (274)
Q Consensus       239 ~Gf~~~~~~~  248 (274)
                       -|..+.+..
T Consensus       232 -~F~~VK~fK  240 (344)
T 3r24_A          232 -HFSWWTAFV  240 (344)
T ss_dssp             -TEEEEEEEE
T ss_pred             -hCCeEEEEC
Confidence             588777764

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.37  E-value=5.6e-05  Score=80.12  Aligned_cols=135  Identities=14%  Similarity=0.073  Sum_probs=67.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---C----CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---P----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~  177 (274)
                      .+..+|||||.|+|..+..+.+   .    -..++..|+++...+.+++++...    +++....|...+  .....||+
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence            3457999999999987554332   1    127899999988887777765432    133322243321  12457999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC----CC---CC----CCcccCHHHHHHHHhcCCCcEEEE
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD----HV---GG----PPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~----~~---~~----~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      |++.++++..  ......+.+++++|+|||++++.+.....    ..   ..    .....+.++|.+++..+||..+..
T Consensus      1315 via~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~~ 1392 (2512)
T 2vz8_A         1315 LVCNCALATL--GDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVAL 1392 (2512)
T ss_dssp             EEEECC----------------------CCEEEEEEC--------------------------CTTTTSSTTTTEEEEEE
T ss_pred             EEEccccccc--ccHHHHHHHHHHhcCCCcEEEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCCceeee
Confidence            9999998754  34456789999999999998886532100    00   00    001246778888899999988765


Q ss_pred             e
Q 024008          247 V  247 (274)
Q Consensus       247 ~  247 (274)
                      .
T Consensus      1393 ~ 1393 (2512)
T 2vz8_A         1393 K 1393 (2512)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.27  E-value=0.002  Score=54.84  Aligned_cols=132  Identities=14%  Similarity=-0.012  Sum_probs=84.7

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024008          109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~  185 (274)
                      +.+++|+.||.|.+...+...|+ .+.++|+++.+++..+.+.+...        .+|+.+...  -..+|+|+......
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~--------~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--------EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--------BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC--------cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            46899999999999999999888 57789999999999999985431        577766322  13589999987765


Q ss_pred             ccCh--------h----HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          186 AIEP--------E----MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       186 ~~~~--------~----~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      .++.        +    ....+ -++.+.++|.  +++.+....-...  ......+.+.+.|++.||.+....-....+
T Consensus        83 ~fS~ag~~~g~~d~r~~L~~~~-~r~i~~~~P~--~~~~ENV~gl~~~--~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~  157 (327)
T 2c7p_A           83 AFSISGKQKGFEDSRGTLFFDI-ARIVREKKPK--VVFMENVKNFASH--DNGNTLEVVKNTMNELDYSFHAKVLNALDY  157 (327)
T ss_dssp             TTCTTSCCCGGGSTTSCHHHHH-HHHHHHHCCS--EEEEEEEGGGGTG--GGGHHHHHHHHHHHHTTBCCEEEEEEGGGG
T ss_pred             CcchhcccCCCcchhhHHHHHH-HHHHHhccCc--EEEEeCcHHHHhc--cccHHHHHHHHHHHhCCCEEEEEEEEHHHc
Confidence            5431        1    12233 3344556774  3343322211100  011235678888999999876544433333

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.25  E-value=0.00048  Score=59.19  Aligned_cols=57  Identities=19%  Similarity=0.104  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC
Q 024008          109 KGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  169 (274)
                      +..|||||.|.|.++..|++.  +.+++++|+++..+...++.. ..   ++++++.+|+.+.
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~---~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG---SPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT---SSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC---CCEEEEECCccch
Confidence            478999999999999999974  569999999999999998877 22   5799999999763

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.15  E-value=0.0013  Score=55.96  Aligned_cols=133  Identities=11%  Similarity=-0.037  Sum_probs=87.2

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC---eE-EEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024008          109 KGRALVPGCGTGYDVVAMASPER---YV-VGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD  180 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~---~v-~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~  180 (274)
                      ..+++|+.||.|.....+.+.|.   .+ .++|+++.+++..+.|.+..       ++.+|+.+..+    ...+|+++.
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~~~~~Dil~g   82 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIESLNCNTWFM   82 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhccCCCCEEEe
Confidence            45899999999999999988873   45 69999999999999987432       45678776432    236899998


Q ss_pred             ccccccc--C--------hhHHHHHHHHHHh-cccC---CcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008          181 YTFFCAI--E--------PEMRAAWAQKIKD-FLKP---DGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       181 ~~~~~~~--~--------~~~~~~~l~~l~~-~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~  246 (274)
                      ......+  +        .+.+..++.++.+ +++.   .-.+++.+....-..     .-+.+.+.+.|++.||.+...
T Consensus        83 gpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~-----~~~~~~i~~~l~~~GY~v~~~  157 (327)
T 3qv2_A           83 SPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE-----SLVFKEIYNILIKNQYYIKDI  157 (327)
T ss_dssp             CCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG-----SHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC-----hHHHHHHHHHHHhCCCEEEEE
Confidence            8775555  1        1222334455555 4432   234555553322110     114678889999999987665


Q ss_pred             eeccccc
Q 024008          247 VDNKLAI  253 (274)
Q Consensus       247 ~~~~~~~  253 (274)
                      .-....+
T Consensus       158 vl~a~~y  164 (327)
T 3qv2_A          158 ICSPIDI  164 (327)
T ss_dssp             EECGGGG
T ss_pred             EEeHHHc
Confidence            5444444

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.12  E-value=0.005  Score=50.36  Aligned_cols=138  Identities=15%  Similarity=0.082  Sum_probs=88.6

Q ss_pred             HHhcCCCCCCeEEEEcCCcchhHHHhhC---------CCCeEEEEe-----CCh----------------------HHHH
Q 024008          101 LHQSGALPKGRALVPGCGTGYDVVAMAS---------PERYVVGLE-----ISD----------------------IAIK  144 (274)
Q Consensus       101 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~---------~~~~v~~iD-----~s~----------------------~~~~  144 (274)
                      +.+....-++.|+|+||-.|..+..++.         ...+++++|     ..+                      +.+.
T Consensus        62 l~~~i~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~  141 (257)
T 3tos_A           62 LYRQVLDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLK  141 (257)
T ss_dssp             HHHHTTTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHH
T ss_pred             HHHHhhCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHH
Confidence            3333334467999999999998887653         246899999     321                      1122


Q ss_pred             HH---HHHhhcCCC-CcceEEEEcccCCC-------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          145 KA---EELSSSLPN-AKFVSFLKADFFTW-------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       145 ~a---~~~~~~~~~-~~~v~~~~~d~~~~-------~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..   .++....+. .++++++.+++.+.       .+..+||+|+.-.-.    ......+++.+...|+|||+|++-+
T Consensus       142 ~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~GGvIv~DD  217 (257)
T 3tos_A          142 EVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTKGSIVAFDE  217 (257)
T ss_dssp             HHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             HHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCCCcEEEEcC
Confidence            11   112223333 37899999999872       234579999965421    1334567899999999999999877


Q ss_pred             ccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          214 FPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +....      +.--..-+.+.+...|.++.....
T Consensus       218 ~~~~~------w~G~~~A~~ef~~~~~~~i~~~p~  246 (257)
T 3tos_A          218 LDNPK------WPGENIAMRKVLGLDHAPLRLLPG  246 (257)
T ss_dssp             TTCTT------CTHHHHHHHHHTCTTSSCCEECTT
T ss_pred             CCCCC------ChHHHHHHHHHHhhCCCeEEEccC
Confidence            53211      112356677888888877655433

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=97.01  E-value=0.027  Score=47.93  Aligned_cols=140  Identities=15%  Similarity=0.146  Sum_probs=93.9

Q ss_pred             CCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCC----------------------CCcceEEEE
Q 024008          109 KGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLP----------------------NAKFVSFLK  163 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~----------------------~~~~v~~~~  163 (274)
                      ...|+-+|||-=.....+...   +.+++=||. |+.++.=++.+...+                      -+.+..++.
T Consensus        91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            468999999987766666553   557777887 555554433333210                      135788999


Q ss_pred             cccCCC-----------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc-cCCCC----------CC
Q 024008          164 ADFFTW-----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PISDH----------VG  221 (274)
Q Consensus       164 ~d~~~~-----------~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~-~~~~~----------~~  221 (274)
                      +|+.+.           ...+..-++++-+++.|++++....+++.+.+...+ |.+++.+. .+.+.          ..
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~-~~~i~yE~i~p~d~fg~~M~~~l~~~  248 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER-AMFINYEQVNMGDRFGQIMIENLRRR  248 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEECCTTSHHHHHHHHHHHTT
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC-ceEEEEeccCCCCHHHHHHHHHHHHh
Confidence            999761           233456688888999999999999999999987754 55444443 22211          11


Q ss_pred             CCC-----cccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          222 GPP-----YKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       222 ~~~-----~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      |.+     ...+.+...+.|.++||..+...+..
T Consensus       249 g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~  282 (334)
T 3iei_A          249 QCDLAGVETCKSLESQKERLLSNGWETASAVDMM  282 (334)
T ss_dssp             TCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHH
T ss_pred             CCCCcccccCCCHHHHHHHHHHcCCCcceeecHH
Confidence            221     12478888999999999987766543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.00  E-value=0.0014  Score=55.77  Aligned_cols=64  Identities=9%  Similarity=-0.045  Sum_probs=55.3

Q ss_pred             CCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC
Q 024008           91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~  154 (274)
                      ...+...+..++.....++..|||.-||+|..+.+..+.|.+++|+|+++..++.+++++...+
T Consensus       235 ~~kp~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          235 ARFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             SCCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CcCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            3455677777777666778999999999999999999999999999999999999999987664

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.89  E-value=0.00077  Score=63.37  Aligned_cols=125  Identities=20%  Similarity=0.232  Sum_probs=80.1

Q ss_pred             CCeEEEEcCCcchhHHHhhC------------CC--CeEEEEeC---ChHHHHHHHH-----------HhhcCC------
Q 024008          109 KGRALVPGCGTGYDVVAMAS------------PE--RYVVGLEI---SDIAIKKAEE-----------LSSSLP------  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~------------~~--~~v~~iD~---s~~~~~~a~~-----------~~~~~~------  154 (274)
                      .-+|+|+|.|+|.+.+...+            ..  .+++.+|.   +.+.+..+-.           ....+.      
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            35999999999998765533            11  47999998   4444443221           111111      


Q ss_pred             ----C---CcceEEEEcccCCCCC------CCCeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCCC
Q 024008          155 ----N---AKFVSFLKADFFTWCP------TELFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDHV  220 (274)
Q Consensus       155 ----~---~~~v~~~~~d~~~~~~------~~~fD~v~~~~~~~~~~~~~-~~~~l~~l~~~L~~gG~l~~~~~~~~~~~  220 (274)
                          +   .-.+++..+|+.+..+      ...+|.++.-..-..-.+++ ...++..+.++++|||.+....       
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~-------  211 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT-------  211 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-------
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-------
Confidence                0   1256778888876221      36899999643211111111 1467899999999999876543       


Q ss_pred             CCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          221 GGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                             ....+.+.+.++||.+..+.
T Consensus       212 -------~~~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          212 -------AAGFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             -------CCHHHHHHHHHTTCEEEEEE
T ss_pred             -------CcHHHHHHHHhCCeEEEecc
Confidence                   34688999999999988766

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.81  E-value=0.0095  Score=50.57  Aligned_cols=133  Identities=14%  Similarity=0.014  Sum_probs=85.4

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccccc
Q 024008          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCA  186 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~  186 (274)
                      ++|+|+-||.|.+...+.+.|+ .+.++|+++.+++.-+.|.+       -.++.+|+.+...  -..+|+++.....+.
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~   73 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGGPPSQS   73 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGGSCCCSEEECCCCGGG
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhhCCcccEEEecCCCCC
Confidence            4799999999999999988898 46689999999998888863       3567889887432  246899998766554


Q ss_pred             cCh--------hHHHHH---HHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          187 IEP--------EMRAAW---AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       187 ~~~--------~~~~~~---l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      ++.        +.+..+   +-++.+.++|.  +++.+....-..  ....-....+.+.|++.||.+....-....+
T Consensus        74 fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~--~~~~~~~~~i~~~l~~~GY~v~~~vlna~~y  147 (331)
T 3ubt_Y           74 WSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMA--QRHNKAVQEFIQEFDNAGYDVHIILLNANDY  147 (331)
T ss_dssp             TEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGG--CTTSHHHHHHHHHHHHHTEEEEEEEEEGGGT
T ss_pred             cCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeeccccc--ccccchhhhhhhhhccCCcEEEEEecccccC
Confidence            311        111122   23455556774  444442221110  0111246778888999999876554444333

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.76  E-value=0.0039  Score=58.42  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             CeEEEEcCCcchhHHHhhC------------CC--CeEEEEeC---ChHHHHHHHHH-----------hhcCCC------
Q 024008          110 GRALVPGCGTGYDVVAMAS------------PE--RYVVGLEI---SDIAIKKAEEL-----------SSSLPN------  155 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~------------~~--~~v~~iD~---s~~~~~~a~~~-----------~~~~~~------  155 (274)
                      -+|||+|.|+|.+.....+            ..  .+++++|.   +++.+..+-..           ...+..      
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            5899999999998754432            11  37999998   77766643321           111110      


Q ss_pred             -------CcceEEEEcccCCCCC------CCCeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCCCC
Q 024008          156 -------AKFVSFLKADFFTWCP------TELFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDHVG  221 (274)
Q Consensus       156 -------~~~v~~~~~d~~~~~~------~~~fD~v~~~~~~~~~~~~~-~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~  221 (274)
                             ...+++..+|+.+..+      ...||+++.-..-....+++ ...++..+.++++|||.+....        
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~--------  219 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT--------  219 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC--------
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc--------
Confidence                   0234566677765221      36799999644222222222 1467899999999999877543        


Q ss_pred             CCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          222 GPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                            ....+.+.+.++||.+....
T Consensus       220 ------~~~~vr~~L~~aGf~v~~~~  239 (676)
T 3ps9_A          220 ------SAGFVRRGLQDAGFTMQKRK  239 (676)
T ss_dssp             ------CCHHHHHHHHHHTCEEEEEE
T ss_pred             ------CcHHHHHHHHhCCeEEEecc
Confidence                  34688899999999987765

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.72  E-value=0.0021  Score=54.49  Aligned_cols=63  Identities=16%  Similarity=0.108  Sum_probs=51.9

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCCh---HHHHHHHHHhhcCC
Q 024008           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISD---IAIKKAEELSSSLP  154 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~---~~~~~a~~~~~~~~  154 (274)
                      ..+...+..++.....++..|||.-||+|..+.+..+.|.+++|+|+++   ..++.+++++...+
T Consensus       226 ~kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          226 QKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            4456667777776667789999999999999999999999999999999   99999999986543

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.72  E-value=0.0014  Score=55.91  Aligned_cols=131  Identities=14%  Similarity=0.027  Sum_probs=85.0

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEecc
Q 024008          110 GRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~~~  182 (274)
                      .+++|+-||.|.....+.+.|.   .+.++|+++.+++..+.|.+.      ..+..+|+.+..+    ...+|+++...
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~~~~D~l~ggp   77 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKKWNVDTILMSP   77 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhccCCCCEEEecC
Confidence            4799999999999999988774   578999999999999888743      3466788876332    23689999876


Q ss_pred             cccccCh--------hHHHHHHH---HHHhccc-CCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          183 FFCAIEP--------EMRAAWAQ---KIKDFLK-PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       183 ~~~~~~~--------~~~~~~l~---~l~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      ....++.        +.+..++.   ++.+.++ |  .+++.+....-..     ....+.+.+.|++.||.+....-..
T Consensus        78 PCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~-----~~~~~~i~~~l~~~GY~v~~~vl~a  150 (333)
T 4h0n_A           78 PCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFEN-----STVRNLFIDKLKECNFIYQEFLLCP  150 (333)
T ss_dssp             CCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGG-----SHHHHHHHHHHHHTTEEEEEEEECT
T ss_pred             CCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhh-----hhHHHHHHHHHHhCCCeEEEEEecH
Confidence            6554421        11112223   3334444 4  4555553332110     1135788999999999886655444


Q ss_pred             ccc
Q 024008          251 LAI  253 (274)
Q Consensus       251 ~~~  253 (274)
                      ..+
T Consensus       151 ~~~  153 (333)
T 4h0n_A          151 STV  153 (333)
T ss_dssp             TTT
T ss_pred             HHc
Confidence            444

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.54  E-value=0.033  Score=40.81  Aligned_cols=109  Identities=17%  Similarity=0.103  Sum_probs=69.8

Q ss_pred             CeEEEEcCCc-chhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEecc
Q 024008          110 GRALVPGCGT-GYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~-G~~~-~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~~  182 (274)
                      .+|+=+|||. |... ..|.+.|..|+++|.+++.++.+++.        .+.++.+|..+.     ..-..+|+|++. 
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~--------g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-   78 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER--------GVRAVLGNAANEEIMQLAHLECAKWLILT-   78 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEESCTTSHHHHHHTTGGGCSEEEEC-
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc--------CCCEEECCCCCHHHHHhcCcccCCEEEEE-
Confidence            5899999865 3222 23334789999999999988877642        267788988762     122468888843 


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                          .+.+.....+-...+.+.|+..++...              ...+..+.+++.|-..+-
T Consensus        79 ----~~~~~~n~~~~~~a~~~~~~~~iiar~--------------~~~~~~~~l~~~G~d~vi  123 (140)
T 3fwz_A           79 ----IPNGYEAGEIVASARAKNPDIEIIARA--------------HYDDEVAYITERGANQVV  123 (140)
T ss_dssp             ----CSCHHHHHHHHHHHHHHCSSSEEEEEE--------------SSHHHHHHHHHTTCSEEE
T ss_pred             ----CCChHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHCCCCEEE
Confidence                222222233344566677888777655              234555777888876544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.24  E-value=0.012  Score=49.16  Aligned_cols=93  Identities=12%  Similarity=0.122  Sum_probs=59.3

Q ss_pred             cceEEEEcccCC---CCCCCCeeEEEecccccccCh------------------hHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEP------------------EMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       157 ~~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~~~------------------~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      .+++++++|..+   ..++++||+|+++..+.....                  ..+..++.++.++|+|||.+++....
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            457899999987   345689999999988753210                  11345778999999999999887532


Q ss_pred             CCCCC--CCCCcccC-HHHHHHHHhcCCCcEEEEeec
Q 024008          216 ISDHV--GGPPYKVS-VSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       216 ~~~~~--~~~~~~~~-~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      .....  .+....++ ...+..+++++||......-+
T Consensus       100 ~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW  136 (297)
T 2zig_A          100 VAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPIIW  136 (297)
T ss_dssp             EEEECC----EEEECHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CccccccCCcccccccHHHHHHHHHHcCCeeeccEEE
Confidence            11000  00000011 356888899999987765443

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.17  E-value=0.026  Score=50.47  Aligned_cols=128  Identities=12%  Similarity=-0.013  Sum_probs=80.0

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024008          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------------  171 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------------  171 (274)
                      .+++|+-||.|.....+.+.|+ .+.++|+++.+++..+.+....   +...++.+|+.+...                 
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~  165 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ  165 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhhhh
Confidence            5899999999999999999888 4889999999998888887432   224566778765221                 


Q ss_pred             -CCCeeEEEecccccccChhH-----------------HHHHH---HHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024008          172 -TELFDLIFDYTFFCAIEPEM-----------------RAAWA---QKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS  230 (274)
Q Consensus       172 -~~~fD~v~~~~~~~~~~~~~-----------------~~~~l---~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~  230 (274)
                       ...+|+++.......++..-                 +..++   -++.+.++|.  +++.+....-..  ........
T Consensus       166 ~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk--~fvlENV~gl~s--~~~g~~f~  241 (482)
T 3me5_A          166 HIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPA--MFVLENVKNLKS--HDKGKTFR  241 (482)
T ss_dssp             HSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCS--EEEEEEETTTTT--GGGGHHHH
T ss_pred             cCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCc--EEEEeCcHHHhc--ccCCcHHH
Confidence             13689999877665543210                 00122   2334445663  444443222111  01112356


Q ss_pred             HHHHHHhcCCCcEE
Q 024008          231 DYEEVLQPMGFQAI  244 (274)
Q Consensus       231 ~~~~~~~~~Gf~~~  244 (274)
                      .+.+.|++.||.+.
T Consensus       242 ~i~~~L~~lGY~v~  255 (482)
T 3me5_A          242 IIMQTLDELGYDVA  255 (482)
T ss_dssp             HHHHHHHHTTEEET
T ss_pred             HHHHHHhcCCcEEE
Confidence            78889999999863

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.92  E-value=0.018  Score=48.17  Aligned_cols=73  Identities=12%  Similarity=-0.020  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCe---EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----CCCeeEEE
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~fD~v~  179 (274)
                      .+.+++|+-||.|.....+.+.|.+   +.++|+++.+++..+.+.+      ...+..+|+.+...     ...+|+++
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dll~   88 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDLVI   88 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCEEE
Confidence            3469999999999999999888885   4899999999988887763      34577888877432     13699999


Q ss_pred             ecccccc
Q 024008          180 DYTFFCA  186 (274)
Q Consensus       180 ~~~~~~~  186 (274)
                      .......
T Consensus        89 ggpPCQ~   95 (295)
T 2qrv_A           89 GGSPCND   95 (295)
T ss_dssp             ECCCCGG
T ss_pred             ecCCCcc
Confidence            8765444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.91  E-value=0.16  Score=36.98  Aligned_cols=106  Identities=15%  Similarity=0.023  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024008          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~  179 (274)
                      ..+|+=+|||.  .+..++    +.|.+|+++|.+++.++.+++.        .+.++.+|..+.     .....+|+|+
T Consensus         6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhCCcccCCEEE
Confidence            35799999854  544443    4789999999999988777642        256788888762     1235689888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      ....     ++.....+....+.+. ...++...              +..+..+.++..|-..+
T Consensus        76 ~~~~-----~~~~n~~~~~~a~~~~-~~~iia~~--------------~~~~~~~~l~~~G~~~v  120 (141)
T 3llv_A           76 ITGS-----DDEFNLKILKALRSVS-DVYAIVRV--------------SSPKKKEEFEEAGANLV  120 (141)
T ss_dssp             ECCS-----CHHHHHHHHHHHHHHC-CCCEEEEE--------------SCGGGHHHHHHTTCSEE
T ss_pred             EecC-----CHHHHHHHHHHHHHhC-CceEEEEE--------------cChhHHHHHHHcCCCEE
Confidence            5432     1222333344444455 55555544              22234456677786543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.80  E-value=0.015  Score=50.97  Aligned_cols=60  Identities=10%  Similarity=0.045  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhh-C-C--CCeEEEEeCChHHHHHHHHHhhc--CCCC-cceEEEEccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMA-S-P--ERYVVGLEISDIAIKKAEELSSS--LPNA-KFVSFLKADF  166 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~-~-~--~~~v~~iD~s~~~~~~a~~~~~~--~~~~-~~v~~~~~d~  166 (274)
                      .++..++|+|++.|..+..++ + .  ..+|+++|++|...+..+++...  ++.. ++++++..-+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            456899999999999999877 3 2  26999999999999999999876  3222 5666665443

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.66  E-value=0.05  Score=46.42  Aligned_cols=91  Identities=19%  Similarity=0.104  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      ..++.+||-+|+|. |..+..+++ .|++|+++|.+++..+.+++.-    . + . ++ .|....  ...+|+|+..-.
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lG----a-~-~-v~-~~~~~~--~~~~D~vid~~g  243 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMG----V-K-H-FY-TDPKQC--KEELDFIISTIP  243 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTT----C-S-E-EE-SSGGGC--CSCEEEEEECCC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcC----C-C-e-ec-CCHHHH--hcCCCEEEECCC
Confidence            44668999999875 677777777 7889999999999888887632    1 1 1 12 332212  127999985422


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      -.        ..+....++|+++|.++....
T Consensus       244 ~~--------~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          244 TH--------YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             SC--------CCHHHHHTTEEEEEEEEECCC
T ss_pred             cH--------HHHHHHHHHHhcCCEEEEECC
Confidence            11        135678899999999988654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.65  E-value=0.018  Score=48.90  Aligned_cols=91  Identities=18%  Similarity=0.170  Sum_probs=60.6

Q ss_pred             cceEEEEcccCC---CCCCCCeeEEEecccccccC------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC
Q 024008          157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCAIE------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVG  221 (274)
Q Consensus       157 ~~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~~------------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~  221 (274)
                      ....++.+|..+   ..++++||+|++...+....            ......++..+.++|+|||.+++..-....  .
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~--~   90 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYM--K   90 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEE--T
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEec--C
Confidence            457889999875   35678999999998875321            024567889999999999999887632200  0


Q ss_pred             CCCcc--cCHHHHHHHHhcCCCcEEEEeec
Q 024008          222 GPPYK--VSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       222 ~~~~~--~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      +.++.  +....+.++++..||......-+
T Consensus        91 g~~~~~~~~~~~i~~~~~~~Gf~~~~~iiW  120 (323)
T 1boo_A           91 GVPARSIYNFRVLIRMIDEVGFFLAEDFYW  120 (323)
T ss_dssp             TEEEECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             CCcccccchHHHHHHHHHhCCCEEEEEEEE
Confidence            11111  12445667788999987764443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.55  E-value=0.0062  Score=52.64  Aligned_cols=93  Identities=14%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC---CCCCCCeeE
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~---~~~~~~fD~  177 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-.     +  .++..   |+.+   ....+.+|+
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~~~~~gg~D~  261 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-----T--HVINSKTQDPVAAIKEITDGGVNF  261 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-----S--EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-----C--EEecCCccCHHHHHHHhcCCCCcE
Confidence            4568999999876 777777777 677 79999999999999876531     1  11211   1111   011237999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+....-        ...+....++|+++|++++...
T Consensus       262 vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          262 ALESTGS--------PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEECSCC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEECCCC--------HHHHHHHHHHHhcCCEEEEeCC
Confidence            9853221        2346788999999999887654

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.38  E-value=0.0087  Score=51.31  Aligned_cols=94  Identities=14%  Similarity=0.069  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCC----CCCCCCe
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFT----WCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~----~~~~~~f  175 (274)
                      ..++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-..       .++.   .|+.+    ......+
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~v~~~t~g~g~  236 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT-------DIINYKNGDIVEQILKATDGKGV  236 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC-------EEECGGGSCHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc-------eEEcCCCcCHHHHHHHHcCCCCC
Confidence            34568999999875 666777776 788 899999999989888775311       1121   11111    1223479


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+|+....-        ...+....++|++||+++....
T Consensus       237 D~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          237 DKVVIAGGD--------VHTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             EEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCC--------hHHHHHHHHHHhcCCEEEEecc
Confidence            999953221        1246788899999999987654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.30  E-value=0.057  Score=46.22  Aligned_cols=93  Identities=19%  Similarity=0.136  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc------ccCC----CCCC
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA------DFFT----WCPT  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~------d~~~----~~~~  172 (274)
                      ..++.+||-+|+|. |..+..+++ .|+ +|+++|.+++..+.+++.-    . +  .++..      +..+    ... 
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG----a-~--~vi~~~~~~~~~~~~~i~~~~~-  240 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG----A-D--LVLQISKESPQEIARKVEGQLG-  240 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT----C-S--EEEECSSCCHHHHHHHHHHHHT-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC----C-C--EEEcCcccccchHHHHHHHHhC-
Confidence            34568999999875 777777777 788 8999999999888887542    1 1  11211      1111    112 


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ..+|+|+..-.-        ...+....++|+++|+++....
T Consensus       241 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          241 CKPEVTIECTGA--------EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             SCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEec
Confidence            569999853221        1345778899999999887653

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.29  E-value=0.071  Score=45.70  Aligned_cols=96  Identities=15%  Similarity=0.036  Sum_probs=64.4

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEE-----cccCC----CCCCC
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK-----ADFFT----WCPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~----~~~~~  173 (274)
                      ..++.+||-+|+|. |..+..+++ .|++ |+++|.+++..+.+++. ...    -+.+..     .|+.+    .....
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~----~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE----VVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT----CEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh----cccccccccchHHHHHHHHHHhCCC
Confidence            34567899999865 667777777 7886 99999999999999877 221    122221     12111    12245


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+|+|+..-.     .   ...+....++|++||++++...
T Consensus       252 g~Dvvid~~g-----~---~~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          252 EPAVALECTG-----V---ESSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECCC
T ss_pred             CCCEEEECCC-----C---hHHHHHHHHHhcCCCEEEEEcc
Confidence            7999985322     1   1346788899999999988654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.27  E-value=0.014  Score=45.41  Aligned_cols=90  Identities=20%  Similarity=0.136  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||..|+  |.|..+..+++ .|++|+++|.+++..+.+++.    +.  .. .+  |..+         ......
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~--~~-~~--d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GV--EY-VG--DSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CC--SE-EE--ETTCSTHHHHHHHHTTTCC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC--CE-Ee--eCCcHHHHHHHHHHhCCCC
Confidence            45679999994  55666665555 788999999998877766532    21  11 11  2221         112246


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+++.+..    .     ..+....++|+++|+++....
T Consensus       108 ~D~vi~~~g----~-----~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          108 VDVVLNSLA----G-----EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             EEEEEECCC----T-----HHHHHHHHTEEEEEEEEECSC
T ss_pred             CeEEEECCc----h-----HHHHHHHHHhccCCEEEEEcC
Confidence            999996432    1     246788899999999887643

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.19  E-value=0.51  Score=38.47  Aligned_cols=128  Identities=11%  Similarity=-0.090  Sum_probs=76.0

Q ss_pred             CeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          110 GRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      ++||=.|+  |..+..+++    .|.+|++++-++........        .+++++.+|+.+.. -..+|+|+......
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~-~~~~d~vi~~a~~~   74 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS-LDGVTHLLISTAPD   74 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC-CTTCCEEEECCCCB
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc-cCCCCEEEECCCcc
Confidence            58999994  877765554    78999999998865443322        24889999998755 56799999766544


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEE-EEEccCCCCCCC------------CCcccCHHHHHHHHhcC-CCcEEEEee
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELI-TLMFPISDHVGG------------PPYKVSVSDYEEVLQPM-GFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-Gf~~~~~~~  248 (274)
                      .........+++.+.+.-..-..++ +..........+            .+|..++...++++... |+..+-+..
T Consensus        75 ~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~ilRp  151 (286)
T 3ius_A           75 SGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAVPNLPLHVFRL  151 (286)
T ss_dssp             TTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             ccccHHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEec
Confidence            3322333445454444312223444 443222111110            12334566667777776 877766665

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.17  E-value=0.42  Score=35.21  Aligned_cols=92  Identities=11%  Similarity=0.047  Sum_probs=58.3

Q ss_pred             CeEEEEcCCcchhHHHhhC----CCCeEEEEeCC-hHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024008          110 GRALVPGCGTGYDVVAMAS----PERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~  179 (274)
                      .+|+=+|+  |..+..+++    .|..|+++|.+ ++.++.......     ..+.++.+|..+.     ..-...|+|+
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            56787876  566655544    78999999997 455555444332     2378899998762     1235688888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +..     +++.....+....+.+.|...++...
T Consensus        77 ~~~-----~~d~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           77 ALS-----DNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             ECS-----SCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             Eec-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            542     22344455566677777777777654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.16  E-value=0.031  Score=48.26  Aligned_cols=92  Identities=23%  Similarity=0.232  Sum_probs=60.9

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCCCCCCCCeeEEEe
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFTWCPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~fD~v~~  180 (274)
                      ..++.+||-+|+|. |..+..+++ .|++|+++|.+++.++.+++.-.     +  .++.   .|..... .+.+|+|+.
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~-~~g~Dvvid  263 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA-----D--EVVNSRNADEMAAH-LKSFDFILN  263 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-----S--EEEETTCHHHHHTT-TTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----c--EEeccccHHHHHHh-hcCCCEEEE
Confidence            34568999999874 677777777 78899999999998888876321     1  1111   1111111 157999985


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ...-.        ..++...++|+++|.++...
T Consensus       264 ~~g~~--------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          264 TVAAP--------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CCSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred             CCCCH--------HHHHHHHHHhccCCEEEEec
Confidence            43211        12467789999999988754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.16  E-value=0.1  Score=45.41  Aligned_cols=101  Identities=15%  Similarity=0.040  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---cc-CC----CCCCCC
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DF-FT----WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~-~~----~~~~~~  174 (274)
                      ..++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.    +    .+.+..   |. .+    ......
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~~i~~~~~~~~~~~~~~~~~g~g  254 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----G----FETIDLRNSAPLRDQIDQILGKPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----T----CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C----CcEEcCCCcchHHHHHHHHhCCCC
Confidence            34568999999976 777888877 688 999999999988887643    2    122221   11 11    111236


Q ss_pred             eeEEEecccccccC--h----hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCAIE--P----EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~--~----~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+|+..-.-....  .    ......+....++|++||++++...
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            99998653321100  0    0011346788899999999886543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.14  E-value=0.66  Score=43.43  Aligned_cols=151  Identities=12%  Similarity=0.120  Sum_probs=95.4

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC----------CCeEEEEeCChHHHHHHHHHhhcCC-----------
Q 024008           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP----------ERYVVGLEISDIAIKKAEELSSSLP-----------  154 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~----------~~~v~~iD~s~~~~~~a~~~~~~~~-----------  154 (274)
                      .+.+++... ..+...|+-+|||-=.....+...          +..++=+|. |+.++.=++.+...+           
T Consensus        95 ~v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~  173 (695)
T 2zwa_A           95 RLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSED  173 (695)
T ss_dssp             HHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSS
T ss_pred             HHHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccc
Confidence            345555543 223468999999987777777553          335555665 455544444443110           


Q ss_pred             --C----------CcceEEEEcccCCC-----------C-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024008          155 --N----------AKFVSFLKADFFTW-----------C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       155 --~----------~~~v~~~~~d~~~~-----------~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                        .          +.+..++.+|+.+.           . ..+..-++++-.++.|++++....+++.+.+.  +++.++
T Consensus       174 ~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~  251 (695)
T 2zwa_A          174 KDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFI  251 (695)
T ss_dssp             CSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEE
T ss_pred             cccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEE
Confidence              0          13688999999862           1 33445677778999999999999999988864  577666


Q ss_pred             EEEccCCC-C-------------CCCCC-----cccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          211 TLMFPISD-H-------------VGGPP-----YKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       211 ~~~~~~~~-~-------------~~~~~-----~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +.+.-... .             ..+.+     ...+.++..+.|.++||..+...+..
T Consensus       252 ~~e~~~~~~~~d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~~  310 (695)
T 2zwa_A          252 ILEQLIPKGPFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMF  310 (695)
T ss_dssp             EEEECCTTCTTSHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEHH
T ss_pred             EEEeecCCCCCChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeHH
Confidence            65532221 0             01111     22368899999999999877666533

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.07  E-value=0.0096  Score=51.30  Aligned_cols=93  Identities=16%  Similarity=0.044  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCeeE
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~fD~  177 (274)
                      .++.+||-+|+|. |..+..+++ .|++|+++|.+++.++.+++.-.       ..++..+..+       ......+|+
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-------~~vi~~~~~~~~~~v~~~~~g~g~D~  260 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA-------DHGINRLEEDWVERVYALTGDRGADH  260 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC-------CEEEcCCcccHHHHHHHHhCCCCceE
Confidence            4567999999775 666667766 88999999999999988876531       1122211111       112347999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      |+.... .        ..+....++|+++|.+++....
T Consensus       261 vid~~g-~--------~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          261 ILEIAG-G--------AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             EEEETT-S--------SCHHHHHHHEEEEEEEEEECCC
T ss_pred             EEECCC-h--------HHHHHHHHHhhcCCEEEEEecC
Confidence            986433 1        1356788899999999887543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.06  E-value=0.03  Score=47.66  Aligned_cols=94  Identities=15%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC-C-CCCCCeeEE
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT-W-CPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~-~-~~~~~fD~v  178 (274)
                      ..++.+||-.|+|. |..+..+++ .|++|+++|.+++..+.+++.-.     +  ..+..   |+.+ . ...+.+|+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA-----E--VAVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-----S--EEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC-----C--EEEeCCCcCHHHHHHHhCCCCCEE
Confidence            34567999999875 777888877 78999999999999998876421     1  11211   1111 0 011368998


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +....    .    ...++...++|+++|.+++...
T Consensus       237 id~~g----~----~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          237 LVTAV----S----PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             EESSC----C----HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEeCC----C----HHHHHHHHHHhccCCEEEEeCC
Confidence            85322    1    2356788899999999987643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.94  E-value=0.66  Score=33.12  Aligned_cols=106  Identities=15%  Similarity=0.130  Sum_probs=61.6

Q ss_pred             CeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024008          110 GRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~  180 (274)
                      ++|+=+|+|  ..+..+    .+.|.+|+++|.+++.++..++..       .+.++.+|..+.     .....+|+|+.
T Consensus         5 m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            5 MYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-------CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            578888874  444433    347889999999998776665432       245667776541     11346899886


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      ...     .+.....+..+.+.+.++ .+++...+              .+..+.++..|...+
T Consensus        76 ~~~-----~~~~~~~~~~~~~~~~~~-~ii~~~~~--------------~~~~~~l~~~g~~~v  119 (140)
T 1lss_A           76 VTG-----KEEVNLMSSLLAKSYGIN-KTIARISE--------------IEYKDVFERLGVDVV  119 (140)
T ss_dssp             CCS-----CHHHHHHHHHHHHHTTCC-CEEEECSS--------------TTHHHHHHHTTCSEE
T ss_pred             eeC-----CchHHHHHHHHHHHcCCC-EEEEEecC--------------HhHHHHHHHcCCCEE
Confidence            522     122233445556667775 44443311              123456677886543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.94  E-value=0.032  Score=48.77  Aligned_cols=98  Identities=16%  Similarity=0.145  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCC----CCCCCCee
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFT----WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~----~~~~~~fD  176 (274)
                      .++.+||=+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-..       .++.   .|+.+    ......+|
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~i~~~t~g~g~D  284 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD-------HVIDPTKENFVEAVLDYTNGLGAK  284 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-------EEECTTTSCHHHHHHHHTTTCCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-------EEEcCCCCCHHHHHHHHhCCCCCC
Confidence            4567999999854 566666666 788 999999999999998765311       1111   11111    12234799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+..-.-.   .......++.+.++++++|.+++...
T Consensus       285 ~vid~~g~~---~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          285 LFLEATGVP---QLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             EEEECSSCH---HHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             EEEECCCCc---HHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            998532111   01222333333455599999988653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.83  E-value=0.63  Score=35.34  Aligned_cols=110  Identities=16%  Similarity=0.128  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCc-chhH-HHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----C-CCCCeeEEE
Q 024008          109 KGRALVPGCGT-GYDV-VAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----C-PTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~-G~~~-~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~v~  179 (274)
                      +.+|+=+|+|. |... ..|.+. |..|+++|.+++.++.+++.    +    +..+.+|..+.     . .-..+|+|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~----g----~~~~~gd~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE----G----RNVISGDATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT----T----CCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC----C----CCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence            46899998764 2222 233346 89999999999887776532    1    45667776541     1 235689888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ...     +.+.....+-...+.+.|++.++....              ..+..+.+++.|-..+.
T Consensus       111 ~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~~--------------~~~~~~~l~~~G~~~vi  157 (183)
T 3c85_A          111 LAM-----PHHQGNQTALEQLQRRNYKGQIAAIAE--------------YPDQLEGLLESGVDAAF  157 (183)
T ss_dssp             ECC-----SSHHHHHHHHHHHHHTTCCSEEEEEES--------------SHHHHHHHHHHTCSEEE
T ss_pred             EeC-----CChHHHHHHHHHHHHHCCCCEEEEEEC--------------CHHHHHHHHHcCCCEEE
Confidence            532     112222223345555667777776541              12334466666766543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.82  E-value=0.22  Score=43.13  Aligned_cols=43  Identities=21%  Similarity=0.155  Sum_probs=34.0

Q ss_pred             CeEEEEcCCcchhHHHhhC---------CCCeEEEEeCChHHHHHHHHHhhc
Q 024008          110 GRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~---------~~~~v~~iD~s~~~~~~a~~~~~~  152 (274)
                      -.|+|+|+|.|.++..+.+         ...+++.||+|+...+.-++++..
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            4799999999999876653         224899999999988877766644

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.74  E-value=0.033  Score=48.04  Aligned_cols=97  Identities=16%  Similarity=0.127  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---C---CCCCCee
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---W---CPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~---~~~~~fD  176 (274)
                      ..++.+||-.|+|. |..+..+++ .|+ +|+++|.+++..+.+++.-..    .-++....|+.+   .   ...+.+|
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~i~~~~~~~~gg~D  255 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT----ATVDPSAGDVVEAIAGPVGLVPGGVD  255 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS----EEECTTSSCHHHHHHSTTSSSTTCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC----EEECCCCcCHHHHHHhhhhccCCCCC
Confidence            34568999999865 666777776 788 899999999999988775311    001111112111   0   1224799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+..-.-        ...+....++|++||.+++...
T Consensus       256 vvid~~G~--------~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          256 VVIECAGV--------AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             EEEECSCC--------HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEEECCCC--------HHHHHHHHHHhccCCEEEEEec
Confidence            99953210        2356788899999999988654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.62  E-value=0.36  Score=42.26  Aligned_cols=90  Identities=12%  Similarity=0.064  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024008          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~  179 (274)
                      ..+|+=+|+|.  .+..++    ..|..|+++|.+++.++.++..        .+.++.+|..+.     ..-...|+|+
T Consensus         4 ~~~viIiG~Gr--~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~--------g~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFGR--FGQITGRLLLSSGVKMVVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT--------TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCeEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC--------CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            35788888854  444433    3789999999999999888743        256788998872     2235788887


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +.     ++++.....+-...+.+.|+..+++..
T Consensus        74 v~-----~~~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           74 NA-----IDDPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             EC-----CSSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EC-----CCChHHHHHHHHHHHHhCCCCeEEEEE
Confidence            53     233444555666777788888887765

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.57  E-value=0.17  Score=43.91  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---c-cCC----CCCCCC
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---D-FFT----WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d-~~~----~~~~~~  174 (274)
                      ..++.+||-+|+|. |..+.++++ .|+ +|+++|.+++.++.+++.-        .+.+..   + +.+    ......
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG--------a~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG--------FEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT--------CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC--------CcEEccCCcchHHHHHHHHhCCCC
Confidence            34568999999865 777778877 788 7999999999999887542        122221   1 111    112246


Q ss_pred             eeEEEecccccccC-------hhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~-------~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+|+..-.-....       .......+....++|++||.+++...
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            99999653321000       00012356788899999999887543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.46  E-value=0.11  Score=44.21  Aligned_cols=94  Identities=17%  Similarity=0.094  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE----cccCC----CCC---C
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK----ADFFT----WCP---T  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~----~d~~~----~~~---~  172 (274)
                      ..++.+||-+|+|. |..+..+++ .|++|+++|.+++.++.+++.-    . +  ..+.    .|..+    ...   .
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lG----a-~--~~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG----A-D--VTLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----C-S--EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----C-C--EEEcCcccccHHHHHHHHhccccC
Confidence            34568999999864 666777776 7889999999999988887532    1 1  1121    11111    011   2


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ..+|+|+....-        ...++...++|+++|.++....
T Consensus       239 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          239 DLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence            469999854221        1245778899999999887643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.32  E-value=0.013  Score=50.02  Aligned_cols=92  Identities=13%  Similarity=0.168  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCC--cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCee
Q 024008          107 LPKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G--~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~----~~~~~~fD  176 (274)
                      .++.+||-+|+|  .|..+..+++ .|++|+++|.+++.++.+++.-.      .. .+..   |+.+    ......+|
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga------~~-~~~~~~~~~~~~~~~~~~~~g~D  215 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA------AY-VIDTSTAPLYETVMELTNGIGAD  215 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC------SE-EEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC------cE-EEeCCcccHHHHHHHHhCCCCCc
Confidence            456899999987  5677777776 78899999999988888876421      11 1111   1111    12234799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+....     ...    .....++|+++|.++....
T Consensus       216 vvid~~g-----~~~----~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          216 AAIDSIG-----GPD----GNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             EEEESSC-----HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCC-----Chh----HHHHHHHhcCCCEEEEEee
Confidence            9985322     111    2334589999999988654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.29  E-value=0.066  Score=43.77  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=56.1

Q ss_pred             eEEEEcccCC---CCCCCCeeEEEeccccccc--------Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC
Q 024008          159 VSFLKADFFT---WCPTELFDLIFDYTFFCAI--------EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP  223 (274)
Q Consensus       159 v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~--------~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~  223 (274)
                      .+++.+|..+   ..++++||+|++...+..-        +.    .....++..+.++|+|||.+++....        
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d--------   76 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP--------   76 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH--------
T ss_pred             CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc--------
Confidence            4577888765   3456789999998876532        11    23467788899999999999886411        


Q ss_pred             CcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          224 PYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                         .....+..++.+.||.......+..
T Consensus        77 ---~~~~~~~~~~~~~gf~~~~~iiW~K  101 (260)
T 1g60_A           77 ---FNCAFICQYLVSKGMIFQNWITWDK  101 (260)
T ss_dssp             ---HHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred             ---HHHHHHHHHHHhhccceeEEEEEEe
Confidence               1234566678888998777555443

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.25  E-value=0.03  Score=47.81  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCeeE
Q 024008          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~----~~~~~~fD~  177 (274)
                      ++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-.     +  .++..   |+.+    ......+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga-----~--~~~~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA-----D--YVINPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC-----S--EEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-----C--EEECCCCcCHHHHHHHHcCCCCCCE
Confidence            678999999853 566666666 788 99999999998888875421     1  11111   1111    112246999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+.....        ...+....++|+++|.++....
T Consensus       240 vid~~g~--------~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          240 FLEFSGA--------PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEECCCC--------HHHHHHHHHHHhcCCEEEEEcc
Confidence            9854321        2346778899999999887643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.23  E-value=0.053  Score=45.88  Aligned_cols=90  Identities=20%  Similarity=0.134  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.||  |.|..+..+++ .|++|+++|.+++.++.+++.    +.  ...+   |..+         ....+.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~--~~~~---d~~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GF--DAAF---NYKTVNSLEEALKKASPDG  214 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC--SEEE---ETTSCSCHHHHHHHHCTTC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CC--cEEE---ecCCHHHHHHHHHHHhCCC
Confidence            45679999998  56666666655 889999999999888877433    11  1111   2221         001247


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+++.+..-         ..+....++|++||++++...
T Consensus       215 ~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          215 YDCYFDNVGG---------EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEEESSCH---------HHHHHHHTTEEEEEEEEECCC
T ss_pred             CeEEEECCCh---------HHHHHHHHHHhcCCEEEEEec
Confidence            9999855331         236778899999999887543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.20  E-value=0.059  Score=45.24  Aligned_cols=87  Identities=17%  Similarity=0.179  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      .++.+||-+|+| .|..+..+++ .|++|++++ +++..+.+++.-.       ..++ .| .+.. ...+|+|+..-. 
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa-------~~v~-~d-~~~v-~~g~Dvv~d~~g-  208 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGV-------RHLY-RE-PSQV-TQKYFAIFDAVN-  208 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTE-------EEEE-SS-GGGC-CSCEEEEECC---
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCC-------CEEE-cC-HHHh-CCCccEEEECCC-
Confidence            456899999985 3677777777 788999999 9988888876431       1112 24 2222 568999984321 


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                       .   +    .+....++|+++|+++...
T Consensus       209 -~---~----~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          209 -S---Q----NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             -------------TTGGGEEEEEEEEEEC
T ss_pred             -c---h----hHHHHHHHhcCCCEEEEEe
Confidence             1   1    1256789999999988874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.09  E-value=0.2  Score=42.32  Aligned_cols=94  Identities=12%  Similarity=0.000  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC---CCCCCCee
Q 024008          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~---~~~~~~fD  176 (274)
                      ..++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+.+.+   +.   ...+..   |+.+   ....+.+|
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g~---~~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL---GF---DGAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT---CC---SEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CC---CEEEECCCHHHHHHHHHhcCCCce
Confidence            345689999998  56777777766 8899999999998888774333   11   111111   1111   01134799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+.+..     .    ..+....++|+++|.+++...
T Consensus       221 ~vi~~~g-----~----~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          221 VFFDNVG-----G----EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             EEEESSC-----H----HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEECCC-----c----chHHHHHHHHhhCCEEEEEee
Confidence            9985322     1    256788899999999887653

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=94.09  E-value=0.3  Score=47.53  Aligned_cols=132  Identities=12%  Similarity=-0.026  Sum_probs=80.5

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc------------CC-----CC
Q 024008          110 GRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF------------FT-----WC  170 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~------------~~-----~~  170 (274)
                      .+++|+-||.|.+..-|.+.|.  .+.++|+++.+++..+.|.+.      ..++.+|+            ..     ..
T Consensus       541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~------~~~~~~DI~~l~~~~~~~di~~~~~~~lp  614 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG------STVFTEDCNILLKLVMAGETTNSRGQRLP  614 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT------SEEECSCHHHHHHHHHHTCSBCTTCCBCC
T ss_pred             CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC------CccccccHHHHhhhccchhhhhhhhhhcc
Confidence            5899999999999999988887  578999999999988888743      34444443            21     11


Q ss_pred             CCCCeeEEEecccccccChh----------HH---HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024008          171 PTELFDLIFDYTFFCAIEPE----------MR---AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~----------~~---~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      ..+.+|+|+.......++..          .+   -..+-++.+.++|.  +++.+.......  .........+.+.|+
T Consensus       615 ~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rPk--~~llENV~glls--~~~~~~~~~i~~~L~  690 (1002)
T 3swr_A          615 QKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPR--FFLLENVRNFVS--FKRSMVLKLTLRCLV  690 (1002)
T ss_dssp             CTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCCS--EEEEEEEGGGGT--TGGGHHHHHHHHHHH
T ss_pred             cCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCCC--EEEEeccHHHhc--cCcchHHHHHHHHHH
Confidence            23579999988765554310          01   11123445556664  344332221110  001123567788888


Q ss_pred             cCCCcEEEEeeccc
Q 024008          238 PMGFQAISIVDNKL  251 (274)
Q Consensus       238 ~~Gf~~~~~~~~~~  251 (274)
                      ..||.+....-...
T Consensus       691 ~lGY~v~~~vLnA~  704 (1002)
T 3swr_A          691 RMGYQCTFGVLQAG  704 (1002)
T ss_dssp             HHTCEEEEEEEEGG
T ss_pred             hcCCeEEEEEEEHH
Confidence            99998755444333

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.07  E-value=0.41  Score=37.62  Aligned_cols=89  Identities=8%  Similarity=-0.031  Sum_probs=57.6

Q ss_pred             eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024008          111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~  181 (274)
                      +|+=+|+  |..+..+++    .|..|+++|.+++.++...+..       .+.++.+|..+.     ..-..+|+|++.
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            5666776  556555544    7899999999999887765432       267889998762     123568988853


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                           .+.+.....+..+.+.+.+...++...
T Consensus        73 -----~~~d~~n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           73 -----TPRDEVNLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             -----CSCHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred             -----cCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence                 223344455566666666666666544

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.04  E-value=0.017  Score=48.86  Aligned_cols=93  Identities=14%  Similarity=0.044  Sum_probs=61.7

Q ss_pred             CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024008          107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~fD  176 (274)
                      .++.+||-.|  +|.|..+..+++ .|++|++++.+++.++.+++.-.     +  ..+..+-.+       ......+|
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga-----~--~~~~~~~~~~~~~~~~~~~~~g~D  211 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA-----W--ETIDYSHEDVAKRVLELTDGKKCP  211 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC-----S--EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----C--EEEeCCCccHHHHHHHHhCCCCce
Confidence            4567999998  355777777766 78899999999999988876421     1  112111111       12234799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +|+....-         ..+....++|+++|.+++....
T Consensus       212 vvid~~g~---------~~~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          212 VVYDGVGQ---------DTWLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             EEEESSCG---------GGHHHHHTTEEEEEEEEECCCT
T ss_pred             EEEECCCh---------HHHHHHHHHhcCCCEEEEEecC
Confidence            99864321         2356788999999999886543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.94  E-value=0.071  Score=45.36  Aligned_cols=95  Identities=14%  Similarity=0.125  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE-cccCC-CCCCCCeeEEEec
Q 024008          108 PKGRALVPGCGT-GYDVVAMAS-P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFT-WCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~-~~~~~~fD~v~~~  181 (274)
                      ++.+||-+|+|. |..+..+++ .  |++|+++|.+++.++.+++.-..    .-++... .|... ......+|+|+..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~~~~~g~g~D~vid~  245 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD----YVSEMKDAESLINKLTDGLGASIAIDL  245 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS----EEECHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC----EEeccccchHHHHHhhcCCCccEEEEC
Confidence            678999999864 666677776 5  89999999999999888764211    0011001 11111 1112379999854


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      -.-        ...++...++|+++|.++....
T Consensus       246 ~g~--------~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          246 VGT--------EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             SCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCC--------hHHHHHHHHHhhcCCEEEEeCC
Confidence            221        1346788899999999887653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.93  E-value=0.02  Score=48.66  Aligned_cols=92  Identities=15%  Similarity=0.078  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~fD  176 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.-    .   ...+..+-.+       ......+|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g----a---~~~~~~~~~~~~~~~~~~~~~~g~D  219 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYG----A---EYLINASKEDILRQVLKFTNGKGVD  219 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT----C---SEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----C---cEEEeCCCchHHHHHHHHhCCCCce
Confidence            45689999994  55666666666 8899999999999888886632    1   1122111111       11234799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+....-         ..+....++|+++|.++....
T Consensus       220 ~vid~~g~---------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          220 ASFDSVGK---------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EEEECCGG---------GGHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCh---------HHHHHHHHHhccCCEEEEEcC
Confidence            99864321         235678889999999888653

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.71  E-value=0.11  Score=44.09  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.-    . +  ..+  |..+         ......
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g----a-~--~~~--d~~~~~~~~~~~~~~~~~~  235 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALG----A-D--ETV--NYTHPDWPKEVRRLTGGKG  235 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT----C-S--EEE--ETTSTTHHHHHHHHTTTTC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcC----C-C--EEE--cCCcccHHHHHHHHhCCCC
Confidence            35689999998  66777777766 7899999999999888887531    1 1  111  2211         112247


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+|+.... .        ..+....++|+++|+++....
T Consensus       236 ~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          236 ADKVVDHTG-A--------LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             EEEEEESSC-S--------SSHHHHHHHEEEEEEEEESSC
T ss_pred             ceEEEECCC-H--------HHHHHHHHhhccCCEEEEEec
Confidence            999996543 2        135678889999999887543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.55  E-value=1.6  Score=35.42  Aligned_cols=74  Identities=20%  Similarity=0.195  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+...           -
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            457788888887774   345666799999999999999988888776665  468889999976211           1


Q ss_pred             CCeeEEEecc
Q 024008          173 ELFDLIFDYT  182 (274)
Q Consensus       173 ~~fD~v~~~~  182 (274)
                      ++.|+++.+.
T Consensus        83 G~iDiLVNNA   92 (254)
T 4fn4_A           83 SRIDVLCNNA   92 (254)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4677777664

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.52  E-value=0.92  Score=37.02  Aligned_cols=105  Identities=14%  Similarity=0.145  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC------------hHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+            .+.++.+.......+  .++.++.+|+.+...
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            446788888887653   244556689999999987            666666655554443  568999999987211


Q ss_pred             -----------CCCeeEEEecccccc----cChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024008          172 -----------TELFDLIFDYTFFCA----IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 -----------~~~fD~v~~~~~~~~----~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~  213 (274)
                                 .++.|+++.+..+..    .+.+.+.           .+++.+...++.+|.++...
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence                       137899998765432    2223322           34466677777788877644

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.43  E-value=0.02  Score=48.83  Aligned_cols=92  Identities=16%  Similarity=0.148  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc--cCC----CCCCCCeeE
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFT----WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~----~~~~~~fD~  177 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++..+.+++.-.     +  .++..+  +.+    ......+|+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga-----~--~v~~~~~~~~~~v~~~~~~~g~Dv  230 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA-----D--IVLPLEEGWAKAVREATGGAGVDM  230 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-----S--EEEESSTTHHHHHHHHTTTSCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-----c--EEecCchhHHHHHHHHhCCCCceE
Confidence            45679999997  55777777776 88999999999988888876421     1  122222  111    122347999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+....-         ..+....++|+++|.+++...
T Consensus       231 vid~~g~---------~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          231 VVDPIGG---------PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             EEESCC-----------CHHHHHHTEEEEEEEEEC--
T ss_pred             EEECCch---------hHHHHHHHhhcCCCEEEEEEc
Confidence            9864321         135678899999999987653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.31  E-value=0.29  Score=41.29  Aligned_cols=90  Identities=10%  Similarity=0.080  Sum_probs=58.3

Q ss_pred             ceEEE-EcccCC---CCCCCCeeEEEeccccccc------C---hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024008          158 FVSFL-KADFFT---WCPTELFDLIFDYTFFCAI------E---PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (274)
Q Consensus       158 ~v~~~-~~d~~~---~~~~~~fD~v~~~~~~~~~------~---~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~  224 (274)
                      ...++ .+|..+   ..++++||+|++...+..-      .   ......++..+.++|+|||.+++..-....   +..
T Consensus        38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~---~~~  114 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQ---GEA  114 (319)
T ss_dssp             EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCC---CCT
T ss_pred             cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccc---ccc
Confidence            46677 899876   4566789999998887532      0   124567788899999999999886532211   000


Q ss_pred             cccCHHHHHHHHhcCC-CcEEEEeecc
Q 024008          225 YKVSVSDYEEVLQPMG-FQAISIVDNK  250 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~G-f~~~~~~~~~  250 (274)
                      .......+...+...| |......-+.
T Consensus       115 ~~~~l~~l~~~i~~~G~~~~~~~IIW~  141 (319)
T 1eg2_A          115 GSGDLISIISHMRQNSKMLLANLIIWN  141 (319)
T ss_dssp             TBCCHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred             ccccHHHHHHHHhCcccceeEEEEEEE
Confidence            1113356666667777 8877655443

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.28  E-value=0.4  Score=40.57  Aligned_cols=94  Identities=16%  Similarity=0.075  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC---CCCCCCeeE
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~---~~~~~~fD~  177 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.+   +.  ...+-..   ++.+   ....+.+|+
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~---g~--~~~~d~~~~~~~~~~~~~~~~~~~d~  228 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF---GF--DDAFNYKEESDLTAALKRCFPNGIDI  228 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS---CC--SEEEETTSCSCSHHHHHHHCTTCEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CC--ceEEecCCHHHHHHHHHHHhCCCCcE
Confidence            45679999997  56777777666 7899999999998888876433   21  1111101   1111   001246999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+.+..      .   ..+....++|+++|.+++...
T Consensus       229 vi~~~g------~---~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          229 YFENVG------G---KMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             EEESSC------H---HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEECCC------H---HHHHHHHHHHhcCCEEEEEcc
Confidence            985432      1   246788899999999887643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.20  E-value=1.3  Score=35.69  Aligned_cols=107  Identities=14%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCC--cch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024008          107 LPKGRALVPGCG--TGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G--~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++  .|.   .+..|++.|++|+.++.++...+.+.+.....+. .++.++.+|+.+...          
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHH
Confidence            446788888876  332   3456666899999999887665665555544331 368999999986321          


Q ss_pred             -CCCeeEEEecccccc----------cChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024008          172 -TELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 -~~~fD~v~~~~~~~~----------~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~~  214 (274)
                       .++.|+++.+..+..          .+.+...           .+++.+...++++|.++....
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence             146899988754332          2323322           345667777788888776653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.18  E-value=0.047  Score=46.82  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc----ccCCCCCCCCeeEEE
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFTWCPTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~~~~~~~fD~v~  179 (274)
                      ..++.+||-+|+|. |..+..+++ .|++|+++|.+++.++.+++.-.     +  .++..    |+.+... +.+|+|+
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~v~~~~~~~~~~~~~~-~~~D~vi  248 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA-----D--HYIATLEEGDWGEKYF-DTFDLIV  248 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC-----S--EEEEGGGTSCHHHHSC-SCEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC-----C--EEEcCcCchHHHHHhh-cCCCEEE
Confidence            34568999999853 666677766 78899999999988888876421     1  12221    1111111 5799999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ....-.  +.    ..+....++|+++|.++....
T Consensus       249 d~~g~~--~~----~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          249 VCASSL--TD----IDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ECCSCS--TT----CCTTTGGGGEEEEEEEEECCC
T ss_pred             ECCCCC--cH----HHHHHHHHHhcCCCEEEEecC
Confidence            653320  00    123567789999999887543

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=93.12  E-value=0.83  Score=43.40  Aligned_cols=43  Identities=9%  Similarity=-0.028  Sum_probs=36.4

Q ss_pred             CCeEEEEcCCcchhHHHhhCCC------C-eEEEEeCChHHHHHHHHHhh
Q 024008          109 KGRALVPGCGTGYDVVAMASPE------R-YVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~------~-~v~~iD~s~~~~~~a~~~~~  151 (274)
                      ..+|+|+-||.|+++.-|.+.|      + .+.++|+++.+++--+.|.+
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            3689999999999998887655      3 57899999999999888864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.06  E-value=0.099  Score=44.85  Aligned_cols=93  Identities=22%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC---CCCCCCee
Q 024008          106 ALPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~---~~~~~~fD  176 (274)
                      ..++.+||-.|  .|.|..+..+++ .|++|++++.+++.++.+++.    +. +  .++..   |+.+   ......+|
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga-~--~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL----GC-D--RPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC-S--EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc----CC-c--EEEecCChhHHHHHHHhcCCCCC
Confidence            34568999999  567777777776 788999999999888888763    21 1  11211   1111   01124699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+....     .    ..+..+.++|+++|.++....
T Consensus       234 ~vid~~g-----~----~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          234 VVYESVG-----G----AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEECSC-----T----HHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCC-----H----HHHHHHHHHHhcCCEEEEEeC
Confidence            9985432     1    246788899999999887654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.04  E-value=0.26  Score=42.54  Aligned_cols=93  Identities=18%  Similarity=0.100  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc------ccCC----CCCCC
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA------DFFT----WCPTE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~------d~~~----~~~~~  173 (274)
                      .++.+||-+|+|. |..+..+++ .| .+|++++.+++.++.+++.-    . +  .++..      |+.+    .....
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lG----a-~--~vi~~~~~~~~~~~~~v~~~~~g~  266 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG----A-D--LTLNRRETSVEERRKAIMDITHGR  266 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT----C-S--EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcC----C-c--EEEeccccCcchHHHHHHHHhCCC
Confidence            3567999999653 566667776 78 59999999999988887532    1 1  12221      1111    12223


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+|+|+....-        ...+....++|+++|.++....
T Consensus       267 g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          267 GADFILEATGD--------SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             CEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence            69999854321        1245778899999999887653

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=92.88  E-value=0.85  Score=45.72  Aligned_cols=130  Identities=13%  Similarity=0.007  Sum_probs=80.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC------------C-----C
Q 024008          109 KGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF------------T-----W  169 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~------------~-----~  169 (274)
                      ..+++|+-||.|++..-+...|.  .+.++|+++.+++.-+.|.+.      ..++.+|+.            .     .
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p~------~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPG------TTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCTT------SEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC------CcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            46899999999999999998997  588999999999988888642      334444432            1     1


Q ss_pred             CCCCCeeEEEecccccccCh----------hHHHHH---HHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024008          170 CPTELFDLIFDYTFFCAIEP----------EMRAAW---AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~~~~----------~~~~~~---l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ...+.+|+|+.......++.          +.+..+   +-++.+.++|.  +++.+........  ........+.+.|
T Consensus       925 p~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rPk--~fv~ENV~glls~--~~g~~~~~il~~L 1000 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPR--FFLLENVRNFVSY--RRSMVLKLTLRCL 1000 (1330)
T ss_dssp             CCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCCS--EEEEEEEGGGGTT--TTTHHHHHHHHHH
T ss_pred             cccCccceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHhcCc--EEEEeccHHHhcc--CccHHHHHHHHHH
Confidence            11346899998766555431          111111   23444556775  4444422211100  0112356788888


Q ss_pred             hcCCCcEEEEee
Q 024008          237 QPMGFQAISIVD  248 (274)
Q Consensus       237 ~~~Gf~~~~~~~  248 (274)
                      +..||.+....-
T Consensus      1001 ~~lGY~v~~~vL 1012 (1330)
T 3av4_A         1001 VRMGYQCTFGVL 1012 (1330)
T ss_dssp             HHHTCEEEEEEE
T ss_pred             HhcCCeeeEEEe
Confidence            899998765433

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=92.82  E-value=0.83  Score=33.97  Aligned_cols=99  Identities=15%  Similarity=0.061  Sum_probs=57.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC------CCCeeE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP------TELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~fD~  177 (274)
                      ....+-|||+|-|.|..--.+.+  ++..|+++|-.-.        .......+.-.++.+|+.+..+      ..+.-+
T Consensus        38 ~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~--------~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~L  109 (174)
T 3iht_A           38 AGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVA--------SHPDSTPPEAQLILGDIRETLPATLERFGATASL  109 (174)
T ss_dssp             TTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCC--------CCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEE
T ss_pred             cCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeec--------cCCCCCCchHheecccHHHHHHHHHHhcCCceEE
Confidence            34457899999999999988888  8889999996311        0000011234677777766221      122222


Q ss_pred             EEecccccccCh--hHHHHHHHHHHhcccCCcEEEEE
Q 024008          178 IFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       178 v~~~~~~~~~~~--~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                      +.+-.-.++-+.  .....+-..+..+|+|||+++..
T Consensus       110 aHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~  146 (174)
T 3iht_A          110 VHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSS  146 (174)
T ss_dssp             EEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            322222221111  12234446677889999988763

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.69  E-value=0.048  Score=46.69  Aligned_cols=92  Identities=15%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~fD  176 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|+++|.+++.++.+++.-.     + . .+..+-.+       ......+|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~-----~-~-~~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGA-----A-A-GFNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC-----S-E-EEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC-----c-E-EEecCChHHHHHHHHHhcCCCce
Confidence            35679999984  55666666665 78999999999998888854421     1 1 11111111       11224699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +++.+..-.         .+....++|+++|.++....
T Consensus       234 ~vi~~~G~~---------~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          234 LILDCIGGS---------YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             EEEESSCGG---------GHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCch---------HHHHHHHhccCCCEEEEEec
Confidence            998654311         24667889999999887653

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=92.66  E-value=0.053  Score=46.85  Aligned_cols=93  Identities=15%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC---CCCCCCe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~---~~~~~~f  175 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.    |.   ..++..     |+.+   ....+.+
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~vi~~~~~~~~~~~~i~~~~~gg~  264 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----GV---NEFVNPKDHDKPIQEVIVDLTDGGV  264 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----TC---CEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CC---cEEEccccCchhHHHHHHHhcCCCC
Confidence            4567999999863 667777776 687 899999999988888643    21   111211     1111   0112379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~  214 (274)
                      |+|+..-.     .   ...+....++|++| |++++...
T Consensus       265 D~vid~~g-----~---~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          265 DYSFECIG-----N---VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             SEEEECSC-----C---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CEEEECCC-----C---HHHHHHHHHHhhccCCEEEEEcc
Confidence            99985322     1   23567889999997 99887654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=92.64  E-value=1.1  Score=36.47  Aligned_cols=76  Identities=14%  Similarity=0.058  Sum_probs=53.7

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  171 (274)
                      .+.++.+|=-|++.|.   .+..|++.|++|+..|.+++.++.+.+.+...+  .++.++.+|+.+..           .
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            3567788888877763   345666699999999999998888777776655  46788888887521           1


Q ss_pred             CCCeeEEEeccc
Q 024008          172 TELFDLIFDYTF  183 (274)
Q Consensus       172 ~~~fD~v~~~~~  183 (274)
                      .++.|+++.+.-
T Consensus        84 ~G~iDiLVNNAG   95 (255)
T 4g81_D           84 GIHVDILINNAG   95 (255)
T ss_dssp             TCCCCEEEECCC
T ss_pred             CCCCcEEEECCC
Confidence            245676666543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.63  E-value=0.023  Score=48.45  Aligned_cols=90  Identities=13%  Similarity=0.159  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCeeE
Q 024008          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~----~~~~~~fD~  177 (274)
                      ++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++. .     +  .++..   |+.+    .. ...+|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~-~~g~D~  234 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT-GSGVEV  234 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH-SSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc-CCCCCE
Confidence            678999999853 566667766 788 999999999877776543 1     1  11111   1111    11 346999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+....-        ...++...++|+++|.++....
T Consensus       235 vid~~g~--------~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          235 LLEFSGN--------EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence            9854221        1346788899999999887643

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.57  E-value=0.4  Score=40.89  Aligned_cols=87  Identities=24%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             CeEEEEcCCc-chhH-HHhh-C-CCCe-EEEEeCChH---HHHHHHHHhhcCCCCcceEEEEcccCCCCC------CCCe
Q 024008          110 GRALVPGCGT-GYDV-VAMA-S-PERY-VVGLEISDI---AIKKAEELSSSLPNAKFVSFLKADFFTWCP------TELF  175 (274)
Q Consensus       110 ~~vLDiG~G~-G~~~-~~l~-~-~~~~-v~~iD~s~~---~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~f  175 (274)
                      .+||-+|+|. |..+ ..++ + .|++ |+++|.+++   ..+.+++.-        .+.+  |..+...      .+.+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lG--------a~~v--~~~~~~~~~i~~~~gg~  243 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD--------ATYV--DSRQTPVEDVPDVYEQM  243 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTT--------CEEE--ETTTSCGGGHHHHSCCE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcC--------Cccc--CCCccCHHHHHHhCCCC
Confidence            8999999753 6677 7788 6 7886 999999887   788876532        1222  2221000      1379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+|+..-.     .   ...+....++|+++|+++....
T Consensus       244 Dvvid~~g-----~---~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          244 DFIYEATG-----F---PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             EEEEECSC-----C---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCC-----C---hHHHHHHHHHHhcCCEEEEEeC
Confidence            99984321     1   1246788899999999887653

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.56  E-value=0.3  Score=41.47  Aligned_cols=95  Identities=16%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCC--cchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc--c----CCCCCCCCe
Q 024008          106 ALPKGRALVPGCG--TGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--F----FTWCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G--~G~~~~~l~~-~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~----~~~~~~~~f  175 (274)
                      ..++.+||-.|+|  .|..+..+++ . |++|+++|.+++.++.+++.-    . + ..+-..+  .    .+....+.+
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g----~-~-~~~~~~~~~~~~~~~~~~~~~~~  241 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAG----A-D-YVINASMQDPLAEIRRITESKGV  241 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHT----C-S-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC----C-C-EEecCCCccHHHHHHHHhcCCCc
Confidence            3456899999997  4555566655 5 899999999999888886542    1 1 1111111  1    001111479


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+|+....-        ...++...++|+++|.++....
T Consensus       242 d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          242 DAVIDLNNS--------EKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             EEEEESCCC--------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             eEEEECCCC--------HHHHHHHHHHHhcCCEEEEECC
Confidence            999854321        1346778899999999887653

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=92.54  E-value=0.084  Score=45.45  Aligned_cols=93  Identities=13%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-c----cCC---CCCCCCe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-D----FFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d----~~~---~~~~~~f  175 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-    . +  .++.. +    +.+   ....+.+
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lG----a-~--~vi~~~~~~~~~~~~~~~~~~~g~  263 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG----A-T--DFVNPNDHSEPISQVLSKMTNGGV  263 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT----C-C--EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhC----C-c--eEEeccccchhHHHHHHHHhCCCC
Confidence            4567999999864 666777776 788 8999999999888887532    1 1  11111 1    111   0011379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~  214 (274)
                      |+|+..-.-        ...+....++|+++ |.+++...
T Consensus       264 D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          264 DFSLECVGN--------VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             SEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEcC
Confidence            999853221        23467888999999 99887643

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.43  E-value=1.8  Score=35.61  Aligned_cols=105  Identities=16%  Similarity=0.126  Sum_probs=67.3

Q ss_pred             CCCCeEEEEcCCcc-----hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024008          107 LPKGRALVPGCGTG-----YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G-----~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------  170 (274)
                      ..++++|=.|++.|     ..+..|++.|++|+.++.++...+.+++.....   .++.++.+|+.+..           
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL---GAFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH---TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHHHH
Confidence            45678999997633     234566679999999999876555555444333   25788999998721           


Q ss_pred             CCCCeeEEEeccccc----------ccChhHH-----------HHHHHHHHhcccCCcEEEEEEc
Q 024008          171 PTELFDLIFDYTFFC----------AIEPEMR-----------AAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~----------~~~~~~~-----------~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ..++.|+++.+..+.          ..+.+.+           -.+++.+...++.+|.|+....
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            124789999875543          1222322           2344566667777888776553

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=92.43  E-value=0.17  Score=42.43  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             eEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc--CCCCCCCCeeEEEeccccc
Q 024008          111 RALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF--FTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       111 ~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~fD~v~~~~~~~  185 (274)
                      +||=.|+  |.|..+..+++ .|++|++++.+++..+.+++.-.     + ..+-..+.  ......+.+|+|+..    
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~-~vi~~~~~~~~~~~~~~~~d~v~d~----  218 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGA-----N-RILSRDEFAESRPLEKQLWAGAIDT----  218 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTC-----S-EEEEGGGSSCCCSSCCCCEEEEEES----
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-----C-EEEecCCHHHHHhhcCCCccEEEEC----
Confidence            5999986  56778888877 88999999999999998876421     1 11111111  111223579998743    


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                       ...    ..+....++|+++|+++....
T Consensus       219 -~g~----~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          219 -VGD----KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             -SCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             -CCc----HHHHHHHHHHhcCCEEEEEec
Confidence             221    257888999999999987653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=92.41  E-value=0.086  Score=45.38  Aligned_cols=93  Identities=15%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC---CCCCCCe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~---~~~~~~f  175 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-    . +  .++..     |+.+   ....+.+
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG----a-~--~vi~~~~~~~~~~~~i~~~t~gg~  262 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG----A-T--ECLNPKDYDKPIYEVICEKTNGGV  262 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT----C-S--EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcC----C-c--EEEecccccchHHHHHHHHhCCCC
Confidence            4567999999864 666677776 687 8999999999888887532    1 1  11111     1111   0112379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~  214 (274)
                      |+|+..-.-        ...+....++|+++ |.+++...
T Consensus       263 Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          263 DYAVECAGR--------IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             SEEEECSCC--------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEcc
Confidence            999853211        23467888999999 99887653

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.40  E-value=0.11  Score=44.04  Aligned_cols=92  Identities=17%  Similarity=0.097  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024008          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD  176 (274)
                      ..++.+||-+|+| .|..+..+++ .|++|+++|.+++.++.+++.    +. +  ..  .|..+..       ..+.+|
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga-~--~~--~d~~~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GA-D--LV--VNPLKEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TC-S--EE--ECTTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC----CC-C--EE--ecCCCccHHHHHHHHhCCCC
Confidence            4456899999985 3666666666 788999999999988888653    11 1  11  1222100       004699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+.....        ...++...++|+++|.++....
T Consensus       233 ~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          233 AAVVTAVS--------KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             EEEESSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCC--------HHHHHHHHHHhhcCCEEEEecc
Confidence            99854321        1346788899999999887543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.38  E-value=0.08  Score=45.03  Aligned_cols=94  Identities=16%  Similarity=0.208  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccCC----CCCCCCee
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT----WCPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~----~~~~~~fD  176 (274)
                      ..++.+||-+|+|. |..+..+++ . +.+|+++|.+++.++.+++.-.     +  .++..  |..+    ......+|
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa-----~--~~i~~~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA-----D--AAVKSGAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC-----S--EEEECSTTHHHHHHHHHGGGCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-----C--EEEcCCCcHHHHHHHHhCCCCCe
Confidence            34568999999865 677777776 4 7799999999999998876421     1  11211  1111    11123799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+..-.     .   ...++...++|+++|.+++...
T Consensus       242 ~v~d~~G-----~---~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          242 AVFDFVG-----A---QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             EEEESSC-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEEECCC-----C---HHHHHHHHHHHhcCCEEEEECC
Confidence            9985321     1   2356888999999999988654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.36  E-value=0.47  Score=40.21  Aligned_cols=92  Identities=13%  Similarity=0.152  Sum_probs=60.7

Q ss_pred             CCCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---C------CCCC
Q 024008          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---W------CPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~------~~~~  173 (274)
                      ..++.+||-.|+  |.|..+..+++ .|++|+++|.+++..+.+++.    +.  . ..+  |..+   .      ...+
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~----g~--~-~~~--d~~~~~~~~~~~~~~~~~  237 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI----GG--E-VFI--DFTKEKDIVGAVLKATDG  237 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT----TC--C-EEE--ETTTCSCHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc----CC--c-eEE--ecCccHhHHHHHHHHhCC
Confidence            345689999998  56677766666 789999999988887777653    21  1 111  3221   0      0012


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+|+|+.+...        ...++.+.++|+++|+++....
T Consensus       238 ~~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          238 GAHGVINVSVS--------EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             CEEEEEECSSC--------HHHHHHHTTSEEEEEEEEECCC
T ss_pred             CCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEeC
Confidence            69999865321        1356888999999999887643

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=92.36  E-value=0.044  Score=46.93  Aligned_cols=91  Identities=20%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024008          107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~fD  176 (274)
                      .++.+||-.|  .|.|..+..+++ .|++|++++.+++.++.+++.-.     +  ..+..+-.+       .. ...+|
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~~~~~~~~~~~~~~~~~~-~~g~D  237 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA-----K--RGINYRSEDFAAVIKAET-GQGVD  237 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC-----S--EEEETTTSCHHHHHHHHH-SSCEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-----C--EEEeCCchHHHHHHHHHh-CCCce
Confidence            3567999985  345677777766 88999999999999988876421     1  112111111       11 35799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+....-     +    .+....++|+++|.+++...
T Consensus       238 vvid~~g~-----~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          238 IILDMIGA-----A----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEESCCG-----G----GHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCCH-----H----HHHHHHHHhccCCEEEEEEe
Confidence            99864331     1    35678889999999887653

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=92.35  E-value=0.062  Score=44.83  Aligned_cols=90  Identities=16%  Similarity=0.088  Sum_probs=59.2

Q ss_pred             CCCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE----cccCCCCCCCCeeEE
Q 024008          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK----ADFFTWCPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~----~d~~~~~~~~~fD~v  178 (274)
                      ..++.+||-.|+  |.|..+..+++ .|++|++++.+++..+.+++.    +. +  ..+.    .|+.+..  +.+|+|
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga-~--~~~~~~~~~~~~~~~--~~~d~v  193 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GA-E--EAATYAEVPERAKAW--GGLDLV  193 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TC-S--EEEEGGGHHHHHHHT--TSEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CC-C--EEEECCcchhHHHHh--cCceEE
Confidence            345689999997  55777777776 788999999999888887653    21 1  1121    1111111  579999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +. ..-         ..+....++|+++|.++....
T Consensus       194 id-~g~---------~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          194 LE-VRG---------KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EE-CSC---------TTHHHHHTTEEEEEEEEEC--
T ss_pred             EE-CCH---------HHHHHHHHhhccCCEEEEEeC
Confidence            86 221         135778899999999887543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=92.33  E-value=0.1  Score=44.95  Aligned_cols=93  Identities=15%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-c----cCC---CCCCCCe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-D----FFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d----~~~---~~~~~~f  175 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-.     +  .++.. +    +.+   ....+.+
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~v~~~~~~g~  261 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-----T--ECINPQDFSKPIQEVLIEMTDGGV  261 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-----S--EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-----c--eEeccccccccHHHHHHHHhCCCC
Confidence            4567999999764 566667766 687 89999999998888875421     1  11111 1    111   0112379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~  214 (274)
                      |+|+..-.-        ...+....++|+++ |.+++...
T Consensus       262 D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          262 DYSFECIGN--------VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             SEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CEEEECCCc--------HHHHHHHHHhhccCCcEEEEEec
Confidence            999853221        23467888999999 99887653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=92.31  E-value=0.38  Score=41.28  Aligned_cols=93  Identities=14%  Similarity=0.126  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC---CCCCCCe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~---~~~~~~f  175 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-.     +  .++..     |+.+   ....+.+
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~~~~~~~~g~  262 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA-----T--ECVNPQDYKKPIQEVLTEMSNGGV  262 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----S--EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-----c--eEecccccchhHHHHHHHHhCCCC
Confidence            4567999999865 666677776 788 89999999998888865321     1  11211     1111   0112379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~  214 (274)
                      |+|+..-.-        ...+....++|+++ |.+++...
T Consensus       263 D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          263 DFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             SEEEECSCC--------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             cEEEECCCC--------HHHHHHHHHHhhcCCcEEEEecc
Confidence            999853221        13467888999999 99887543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=92.26  E-value=0.096  Score=45.13  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC---CCCCCCe
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~---~~~~~~f  175 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-.     +  ..+..     |+.+   ....+.+
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~v~~~~~~g~  266 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-----T--DCLNPRELDKPVQDVITELTAGGV  266 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----S--EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-----c--EEEccccccchHHHHHHHHhCCCc
Confidence            4567999999864 666677776 788 89999999998888865321     1  11111     1111   0011379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~  214 (274)
                      |+|+..-.-        ...+....++|+++ |.+++...
T Consensus       267 Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          267 DYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             SEEEESSCC--------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             cEEEECCCC--------HHHHHHHHHHhhcCCCEEEEECC
Confidence            999843211        23467889999999 99887543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.23  E-value=0.049  Score=46.58  Aligned_cols=89  Identities=16%  Similarity=0.165  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.    +. +  ..+  |..+         ......
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga-~--~~~--d~~~~~~~~~~~~~~~~~~  239 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GA-H--EVF--NHREVNYIDKIKKYVGEKG  239 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC-S--EEE--ETTSTTHHHHHHHHHCTTC
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----CC-C--EEE--eCCCchHHHHHHHHcCCCC
Confidence            45679999997  55666666665 889999999999888877543    11 1  111  2211         111237


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +|+|+.+..      .   ..+....++|+++|.++...
T Consensus       240 ~D~vi~~~G------~---~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          240 IDIIIEMLA------N---VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             EEEEEESCH------H---HHHHHHHHHEEEEEEEEECC
T ss_pred             cEEEEECCC------h---HHHHHHHHhccCCCEEEEEe
Confidence            999985432      1   23567889999999988765

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.17  E-value=0.99  Score=36.35  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=67.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+...     .++.++.+|+.+...           .
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            456788888877653   234555689999999999988777665542     468899999986211           1


Q ss_pred             CCeeEEEecccccc------cChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024008          173 ELFDLIFDYTFFCA------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       173 ~~fD~v~~~~~~~~------~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ++.|+++.+.....      .+.+...           .+.+.+...++++|.++...
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            47899998754322      2333322           23456666677788776654

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=92.16  E-value=0.61  Score=38.30  Aligned_cols=81  Identities=14%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             eEEE-EcccCCCCCCCCeeEEEeccccccc--------Ch-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC
Q 024008          159 VSFL-KADFFTWCPTELFDLIFDYTFFCAI--------EP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS  228 (274)
Q Consensus       159 v~~~-~~d~~~~~~~~~fD~v~~~~~~~~~--------~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~  228 (274)
                      .++. .+|+..+...+++|+|++...-..-        |. .....++....++|+|||.+++-.|...+.        .
T Consensus       190 At~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr--------~  261 (320)
T 2hwk_A          190 ATFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADR--------A  261 (320)
T ss_dssp             CSEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSH--------H
T ss_pred             ceeecccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcc--------c
Confidence            3444 6777765555789999997553221        11 123346778889999999999988766432        3


Q ss_pred             HHHHHHHHhcCCCcEEEEee
Q 024008          229 VSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       229 ~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .+++...+++ -|+.+.+..
T Consensus       262 se~lv~~LaR-~F~~Vr~vK  280 (320)
T 2hwk_A          262 SESIIGAIAR-QFKFSRVCK  280 (320)
T ss_dssp             HHHHHHHHHT-TEEEEEEEC
T ss_pred             HHHHHHHHHH-hcceeeeeC
Confidence            5667676766 487776665

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=92.12  E-value=0.35  Score=42.17  Aligned_cols=43  Identities=19%  Similarity=0.063  Sum_probs=36.9

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC---e----EEEEeCChHHHHHHHHHhhc
Q 024008          110 GRALVPGCGTGYDVVAMASPER---Y----VVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~---~----v~~iD~s~~~~~~a~~~~~~  152 (274)
                      .+|+|+-||.|.....+.+.|.   .    |.++|+++.++..-+.+...
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            5899999999999999988662   3    78899999999988888764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.11  E-value=0.049  Score=45.99  Aligned_cols=90  Identities=12%  Similarity=0.114  Sum_probs=59.7

Q ss_pred             CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024008          107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.|  +|.|..+..+++ .|++|+++|.+++.++.+++.-    .  .. .+  |..+         ......
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g----~--~~-~~--~~~~~~~~~~~~~~~~~~~  209 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG----A--WQ-VI--NYREEDLVERLKEITGGKK  209 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT----C--SE-EE--ETTTSCHHHHHHHHTTTCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----C--CE-EE--ECCCccHHHHHHHHhCCCC
Confidence            3567999999  455666666655 7889999999998888887631    1  11 11  2211         111246


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+++.+.. .        ..++...++|+++|.++....
T Consensus       210 ~D~vi~~~g-~--------~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          210 VRVVYDSVG-R--------DTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEEEECSC-G--------GGHHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCc-h--------HHHHHHHHHhcCCCEEEEEec
Confidence            999986543 1        235778899999999887653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.10  E-value=0.32  Score=42.71  Aligned_cols=43  Identities=16%  Similarity=0.113  Sum_probs=34.1

Q ss_pred             CCeEEEEcCCcchhHHHhhC----C---CCeEEEEeCChHHHHHHHHHhh
Q 024008          109 KGRALVPGCGTGYDVVAMAS----P---ERYVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~----~---~~~v~~iD~s~~~~~~a~~~~~  151 (274)
                      +..|+|+|+|+|.++..+++    .   ..+++.||+|+...+.-++++.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            46999999999998876654    1   2389999999988777776654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.92  E-value=4.4  Score=33.10  Aligned_cols=57  Identities=14%  Similarity=0.005  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+.     .++.++.+|+.+
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g-----~~~~~~~~Dv~~   86 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG-----GGAVGIQADSAN   86 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTCEEEECCTTC
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----CCeEEEEecCCC
Confidence            567888888887773   345666699999999999998877765542     346777888754

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=91.90  E-value=0.07  Score=45.15  Aligned_cols=90  Identities=21%  Similarity=0.203  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|+++|.+++.++.+++.-    . + . .+  |..+         ......
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g----~-~-~-~~--d~~~~~~~~~i~~~~~~~~  214 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLG----C-H-H-TI--NYSTQDFAEVVREITGGKG  214 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT----C-S-E-EE--ETTTSCHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----C-C-E-EE--ECCCHHHHHHHHHHhCCCC
Confidence            45679999995  66777766665 7899999999998888886531    1 1 1 11  2211         111246


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+++.+..-         ..++...++|+++|.++....
T Consensus       215 ~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          215 VDVVYDSIGK---------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             EEEEEECSCT---------TTHHHHHHTEEEEEEEEECCC
T ss_pred             CeEEEECCcH---------HHHHHHHHhhccCCEEEEEec
Confidence            9999865331         235778899999999887653

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=91.71  E-value=3.1  Score=33.26  Aligned_cols=60  Identities=10%  Similarity=-0.111  Sum_probs=44.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   67 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARN   67 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCC
Confidence            345788888887663   344555689999999999888777776665543  468888888864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.71  E-value=0.83  Score=33.68  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=52.4

Q ss_pred             CCCCeEEEEcCCc-chhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---C--CCCCCeeEEE
Q 024008          107 LPKGRALVPGCGT-GYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---W--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~-~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~--~~~~~fD~v~  179 (274)
                      .++.+|+=+|||. |... ..|...|..|+++|.+++.++.++.   ..    ...++.+|...   .  ..-..+|+|+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC----CSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC----CCcEEEecCCCHHHHHHcCcccCCEEE
Confidence            4567999998854 2222 2333478899999999875543321   11    24556666543   1  1124689888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..-.     .+.....+..+.+.+.+...++...
T Consensus        90 ~~~~-----~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           90 AFTN-----DDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             ECSS-----CHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             EEeC-----CcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            5422     2223334444555555555555544

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=91.63  E-value=2.5  Score=34.30  Aligned_cols=113  Identities=13%  Similarity=-0.008  Sum_probs=70.5

Q ss_pred             HHHhcCCCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC-hHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----
Q 024008          100 HLHQSGALPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----  171 (274)
Q Consensus       100 ~~~~~~~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----  171 (274)
                      .++......++++|=.|++.|.   .+..|++.|++|+.++.. .+..+...+.+...+  .++.++.+|+.+...    
T Consensus        22 ~mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~   99 (271)
T 3v2g_A           22 SMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQA   99 (271)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHH
T ss_pred             hhccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHH
Confidence            3444345667889999987663   345566689999998754 455555555444433  468899999986211    


Q ss_pred             -------CCCeeEEEecccccc------cChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024008          172 -------TELFDLIFDYTFFCA------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 -------~~~fD~v~~~~~~~~------~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~~  214 (274)
                             .++.|+++.+..+..      .+.+.+.           .+++.+...++++|.++....
T Consensus       100 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          100 IRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                   137899998754322      2333322           345666777778888776643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=91.53  E-value=0.6  Score=39.91  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=59.9

Q ss_pred             CCCeEEEEc--CCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccCC---CCCCCCeeEE
Q 024008          108 PKGRALVPG--CGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT---WCPTELFDLI  178 (274)
Q Consensus       108 ~~~~vLDiG--~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~---~~~~~~fD~v  178 (274)
                      ++.+||=.|  .|.|..+..+++  .+++|++++.+++.++.+++.-    . +  .++..  |+.+   ....+.+|+|
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lG----a-d--~vi~~~~~~~~~v~~~~~~g~Dvv  243 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLG----A-H--HVIDHSKPLAAEVAALGLGAPAFV  243 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTT----C-S--EEECTTSCHHHHHHTTCSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcC----C-C--EEEeCCCCHHHHHHHhcCCCceEE
Confidence            456899988  345788888887  4789999999999888887632    1 1  11111  1111   1133579999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                      +....        ....++.+.++|+++|.+++.
T Consensus       244 id~~g--------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          244 FSTTH--------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EECSC--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             EECCC--------chhhHHHHHHHhcCCCEEEEE
Confidence            84311        123567888999999999876

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.50  E-value=2.4  Score=34.76  Aligned_cols=105  Identities=12%  Similarity=0.073  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.++. ..+...+.....+  .++.++.+|+.+...           
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            456788988877653   23455568999999998765 3444444444443  468999999986211           


Q ss_pred             CCCeeEEEeccccc-------ccChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024008          172 TELFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~~~fD~v~~~~~~~-------~~~~~~~-----------~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .++.|+++.+....       .++.+.+           -.+++.+...++.+|.++...
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            14789999874332       1233332           234566777778888776654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=91.16  E-value=0.62  Score=39.87  Aligned_cols=93  Identities=23%  Similarity=0.134  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC-CCCCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~~~~~~fD~v~~~~~  183 (274)
                      ++.+||-+|+|. |..+..+++ .|++|++++.+++..+.+++.+..    +  .++.. +... ....+.+|+|+....
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa----~--~v~~~~~~~~~~~~~~~~D~vid~~g  260 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA----D--SFLVSRDQEQMQAAAGTLDGIIDTVS  260 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC----S--EEEETTCHHHHHHTTTCEEEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC----c--eEEeccCHHHHHHhhCCCCEEEECCC
Confidence            678999998753 455556655 788999999999887777643311    1  11111 1000 001247999996533


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ...        .++...++|+++|.++....
T Consensus       261 ~~~--------~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          261 AVH--------PLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             SCC--------CSHHHHHHEEEEEEEEECCC
T ss_pred             cHH--------HHHHHHHHHhcCCEEEEEcc
Confidence            221        13456788999999887543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=91.07  E-value=0.1  Score=44.41  Aligned_cols=90  Identities=17%  Similarity=0.227  Sum_probs=58.7

Q ss_pred             CCCeEEEEc-C-CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccCC---CCCCCCeeEEE
Q 024008          108 PKGRALVPG-C-GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT---WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG-~-G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~---~~~~~~fD~v~  179 (274)
                      ++.+||-.| + |.|..+..+++ .|++|++++.+++.++.+++.-.     +  .++..  |+.+   ......+|+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~~~~~g~Dvv~  222 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA-----D--IVLNHKESLLNQFKTQGIELVDYVF  222 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC-----S--EEECTTSCHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-----c--EEEECCccHHHHHHHhCCCCccEEE
Confidence            567999884 3 34666677766 78999999999999998887421     1  11111  1111   11235799998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                      ....        ....+..+.++|+++|.++..
T Consensus       223 d~~g--------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          223 CTFN--------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             ESSC--------HHHHHHHHHHHEEEEEEEEES
T ss_pred             ECCC--------chHHHHHHHHHhccCCEEEEE
Confidence            5321        123567888999999998764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=91.02  E-value=1.4  Score=35.41  Aligned_cols=105  Identities=17%  Similarity=0.068  Sum_probs=65.4

Q ss_pred             CCCCCeEEEEcCC-cchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----------
Q 024008          106 ALPKGRALVPGCG-TGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------  170 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~----~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------  170 (274)
                      ..++++||=.|++ +|..+    ..|++.|++|+.++.+....+.+++.....+   ++.++.+|+.+..          
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHH
Confidence            3456789999975 23333    4555589999999988655555555444432   4788999998721          


Q ss_pred             -CCCCeeEEEecccccc-----------cChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024008          171 -PTELFDLIFDYTFFCA-----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 -~~~~fD~v~~~~~~~~-----------~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~  213 (274)
                       ..++.|+++.+..+..           .+.+...           .+++.+...++++|.++...
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence             1247899998754432           3333322           34455666677778776654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=90.96  E-value=1.4  Score=35.24  Aligned_cols=76  Identities=16%  Similarity=0.063  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+...           .
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            446788888876652   345555689999999999988887777665543  568899999987211           1


Q ss_pred             CCeeEEEecccc
Q 024008          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~fD~v~~~~~~  184 (274)
                      ++.|+++.+..+
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            378999987644

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=90.94  E-value=6.3  Score=32.97  Aligned_cols=94  Identities=13%  Similarity=0.106  Sum_probs=58.7

Q ss_pred             CCCCCeEEEEcCCcc-hhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCe
Q 024008          106 ALPKGRALVPGCGTG-YDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G-~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~----~~~~~~f  175 (274)
                      ..++.+||=.|+|.. ..+..+++ .|+ .++++|.+++.++.+++.-.       ...+..   |..+    ......+
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa-------~~~i~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA-------MQTFNSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHGGGCSS
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC-------eEEEeCCCCCHHHHHHhhcccCCc
Confidence            456689999998753 44455555 676 57899999999888876531       111211   1111    1123467


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+|+....    .    ...++...++|++||.+++...
T Consensus       231 d~v~d~~G----~----~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          231 QLILETAG----V----PQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             EEEEECSC----S----HHHHHHHHHHCCTTCEEEECCC
T ss_pred             cccccccc----c----cchhhhhhheecCCeEEEEEec
Confidence            88874321    0    2346778899999999887653

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=90.80  E-value=1.2  Score=37.91  Aligned_cols=92  Identities=11%  Similarity=0.004  Sum_probs=59.9

Q ss_pred             CCCC--CeEEEEcC--CcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--------CC
Q 024008          106 ALPK--GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------CP  171 (274)
Q Consensus       106 ~~~~--~~vLDiG~--G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~  171 (274)
                      ..++  .+||-.|+  |.|..+..+++ .|+ +|++++.+++.++.+++.+   +. + . .+  |..+.        ..
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g~-~-~-~~--d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---GF-D-A-AI--NYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---CC-S-E-EE--ETTTSCHHHHHHHHC
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---CC-c-e-EE--ecCchHHHHHHHHhc
Confidence            3456  89999997  55566666655 888 9999999988887776533   11 1 1 11  22110        01


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+.+|+++.+..         ...+....++|+++|++++...
T Consensus       228 ~~~~d~vi~~~G---------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          228 PAGVDVYFDNVG---------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             TTCEEEEEESCC---------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCCEEEECCC---------HHHHHHHHHHhccCcEEEEECC
Confidence            126999985433         1346788899999999887653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=90.66  E-value=6  Score=32.88  Aligned_cols=62  Identities=19%  Similarity=0.091  Sum_probs=44.8

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..+++||=.|++.|.   .+..|++.|++|++++.+++.++.+...+...+...++.++.+|+.+
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~   70 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS   70 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC
Confidence            345788988887663   23455558999999999998888777666544322368888999875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.65  E-value=1.7  Score=34.44  Aligned_cols=90  Identities=10%  Similarity=-0.043  Sum_probs=57.9

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024008          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~  179 (274)
                      ..+|+=+|+|  ..+..++    +.|. |+++|.+++.++.++     .    .+.++.+|..+.     ..-...|.|+
T Consensus         9 ~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (234)
T 2aef_A            9 SRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKANVRGARAVI   76 (234)
T ss_dssp             -CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHTTCTTCSEEE
T ss_pred             CCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhcCcchhcEEE
Confidence            3689989885  4544443    3677 999999998776664     1    267899998762     1235688888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +..     +++.....+....+.+.|+..++.....
T Consensus        77 ~~~-----~~d~~n~~~~~~a~~~~~~~~iia~~~~  107 (234)
T 2aef_A           77 VDL-----ESDSETIHCILGIRKIDESVRIIAEAER  107 (234)
T ss_dssp             ECC-----SCHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred             EcC-----CCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence            532     2233344455666667887777765533

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=90.64  E-value=0.25  Score=41.57  Aligned_cols=91  Identities=12%  Similarity=-0.020  Sum_probs=56.9

Q ss_pred             eEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc--cCCCCCCCCeeEEEeccccc
Q 024008          111 RALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       111 ~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +||-.|+  |.|..+..+++ .|+++++++.+++.++.+++.-    ...-++....+  .......+.+|+|+....- 
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lG----a~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~-  226 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLG----AKEVLAREDVMAERIRPLDKQRWAAAVDPVGG-  226 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTT----CSEEEECC---------CCSCCEEEEEECSTT-
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC----CcEEEecCCcHHHHHHHhcCCcccEEEECCcH-
Confidence            8999997  66777777777 7889999999988888886532    11111111111  1111123479999854221 


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                              ..+....++++++|.+++...
T Consensus       227 --------~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          227 --------RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             --------TTHHHHHHTEEEEEEEEECSC
T ss_pred             --------HHHHHHHHhhccCCEEEEEee
Confidence                    135678889999999887643

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=90.57  E-value=1.9  Score=36.29  Aligned_cols=90  Identities=10%  Similarity=-0.045  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024008          109 KGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~  179 (274)
                      .++|+=+|+  |..+..+++    .|. ++++|.+++.++ +++    .    .+.++.+|..+.     ..-+.+|.++
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~----~----~~~~i~gd~~~~~~L~~a~i~~a~~vi  182 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR----S----GANFVHGDPTRVSDLEKANVRGARAVI  182 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH----T----TCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh----C----CcEEEEeCCCCHHHHHhcChhhccEEE
Confidence            357888887  566665554    577 999999999887 543    1    378999998862     2235788888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +..     +++......-...+.+.|...++.....
T Consensus       183 ~~~-----~~d~~n~~~~~~ar~~~~~~~iiar~~~  213 (336)
T 1lnq_A          183 VDL-----ESDSETIHCILGIRKIDESVRIIAEAER  213 (336)
T ss_dssp             ECC-----SSHHHHHHHHHHHHTTCTTSEEEEECSS
T ss_pred             EcC-----CccHHHHHHHHHHHHHCCCCeEEEEECC
Confidence            532     2234444555666777887777765543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.53  E-value=3  Score=33.75  Aligned_cols=106  Identities=20%  Similarity=0.087  Sum_probs=67.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeC-ChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++. +.+..+...+.+...+  .++.++.+|+.+...           
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456788888877653   23455668999999876 4555555555554443  468899999987211           


Q ss_pred             CCCeeEEEecccccc------cChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024008          172 TELFDLIFDYTFFCA------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~------~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .++.|+++.+.....      .+.+.+.           .+.+.+...++++|.++....
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            146899998754432      2333322           344667777788888776654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.40  E-value=2.7  Score=33.02  Aligned_cols=133  Identities=11%  Similarity=-0.039  Sum_probs=73.5

Q ss_pred             CCCCeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcce-EEEEcccCCC--CCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~----l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~--~~~~~fD~v~  179 (274)
                      ..+++||=.|+ +|..+..    |++.|++|++++-++........        .++ .++.+|+.+.  ..-+..|+|+
T Consensus        19 l~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D~vi   89 (236)
T 3e8x_A           19 FQGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHAFASIDAVV   89 (236)
T ss_dssp             --CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGGGTTCSEEE
T ss_pred             cCCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHHHcCCCEEE
Confidence            44678988885 4444444    44489999999998876554332        137 8899998631  1124689999


Q ss_pred             ecccccccCh-h--------HHHHHHHHHHhcccCCcEEEE-EEccCCCCC----CCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          180 DYTFFCAIEP-E--------MRAAWAQKIKDFLKPDGELIT-LMFPISDHV----GGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       180 ~~~~~~~~~~-~--------~~~~~l~~l~~~L~~gG~l~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      .+........ .        ....+++.+.+. . .+.++. ..++.....    ....|..++...+++++..|+...-
T Consensus        90 ~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~iv~~SS~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~gi~~~~  167 (236)
T 3e8x_A           90 FAAGSGPHTGADKTILIDLWGAIKTIQEAEKR-G-IKRFIMVSSVGTVDPDQGPMNMRHYLVAKRLADDELKRSSLDYTI  167 (236)
T ss_dssp             ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHH-T-CCEEEEECCTTCSCGGGSCGGGHHHHHHHHHHHHHHHHSSSEEEE
T ss_pred             ECCCCCCCCCccccchhhHHHHHHHHHHHHHc-C-CCEEEEEecCCCCCCCCChhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence            7765432111 1        112233333221 2 244444 333322211    1112334677778888888988776


Q ss_pred             Eeecc
Q 024008          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      +..-.
T Consensus       168 lrpg~  172 (236)
T 3e8x_A          168 VRPGP  172 (236)
T ss_dssp             EEECS
T ss_pred             EeCCc
Confidence            66533

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=90.36  E-value=0.46  Score=40.53  Aligned_cols=93  Identities=20%  Similarity=0.121  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC-CCCCCCeeEEEeccc
Q 024008          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~~~~~~fD~v~~~~~  183 (274)
                      ++.+||-+|+|. |..+..+++ .|++|++++.+++..+.+++.+   +. +.  ++.. +... ....+.+|+|+..-.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l---Ga-~~--vi~~~~~~~~~~~~~g~D~vid~~g  253 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL---GA-DD--YVIGSDQAKMSELADSLDYVIDTVP  253 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS---CC-SC--EEETTCHHHHHHSTTTEEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc---CC-ce--eeccccHHHHHHhcCCCCEEEECCC
Confidence            678999998753 455566665 6889999999988777776332   21 11  1111 1000 001246999985432


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      -..        .++...++|+++|.++....
T Consensus       254 ~~~--------~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          254 VHH--------ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             SCC--------CSHHHHTTEEEEEEEEECSC
T ss_pred             ChH--------HHHHHHHHhccCCEEEEeCC
Confidence            211        13567789999999887643

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=90.25  E-value=2.3  Score=34.24  Aligned_cols=73  Identities=23%  Similarity=0.185  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeE
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD~  177 (274)
                      +.++.+|=-|++.|.   .+..|++.|++|+..|.+..  +.+.+.+...+  .++.++.+|+.+.      ...++.|+
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDi   82 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDI   82 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence            567788888877774   34566669999999998743  22223333333  4688899998762      23467999


Q ss_pred             EEeccc
Q 024008          178 IFDYTF  183 (274)
Q Consensus       178 v~~~~~  183 (274)
                      ++.+.-
T Consensus        83 LVNNAG   88 (247)
T 4hp8_A           83 LVNNAG   88 (247)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            998754

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=90.19  E-value=0.11  Score=44.21  Aligned_cols=88  Identities=15%  Similarity=0.149  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~fD  176 (274)
                      .++.+||-+|+  |.|..+..+++ .|++|+++ .+++.++.+++.-        .+.+. +-.+       ......+|
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lG--------a~~i~-~~~~~~~~~~~~~~~~g~D  218 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLG--------ATPID-ASREPEDYAAEHTAGQGFD  218 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHT--------SEEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcC--------CCEec-cCCCHHHHHHHHhcCCCce
Confidence            35679999994  45777777776 78999999 8888888886642        11122 1111       11234799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +|+....     .    ..+....++|+++|.+++..
T Consensus       219 ~vid~~g-----~----~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          219 LVYDTLG-----G----PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             EEEESSC-----T----HHHHHHHHHEEEEEEEEESC
T ss_pred             EEEECCC-----c----HHHHHHHHHHhcCCeEEEEc
Confidence            9985322     1    24677888999999988754

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=90.18  E-value=2.7  Score=33.36  Aligned_cols=75  Identities=21%  Similarity=0.111  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~  173 (274)
                      .++++|=.|++.|.   .+..|++.|++|+.++.+++..+...+.....+  .++.++.+|+.+..           ..+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45678888876552   344555689999999999988877777665554  46899999998621           124


Q ss_pred             CeeEEEecccc
Q 024008          174 LFDLIFDYTFF  184 (274)
Q Consensus       174 ~fD~v~~~~~~  184 (274)
                      +.|+++.+..+
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999987554

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=90.09  E-value=0.86  Score=38.50  Aligned_cols=97  Identities=11%  Similarity=0.071  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcCCcch-hHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGY-DVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~-~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v  178 (274)
                      ..++.+||=+|+|.+. .+..+++  .+.+|+++|.+++.++.+++.-..    .-++....|..+    ......+|.+
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~----~~i~~~~~~~~~~v~~~t~g~g~d~~  236 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD----VTINSGDVNPVDEIKKITGGLGVQSA  236 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS----EEEEC-CCCHHHHHHHHTTSSCEEEE
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe----EEEeCCCCCHHHHhhhhcCCCCceEE
Confidence            4567899999998754 3444444  477999999999988888765421    112222222221    1223457777


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +....    .    ...+....++|+++|.+++...
T Consensus       237 ~~~~~----~----~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          237 IVCAV----A----RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             EECCS----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEecc----C----cchhheeheeecCCceEEEEec
Confidence            64322    1    2356788899999999887653

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=89.86  E-value=1.8  Score=38.21  Aligned_cols=94  Identities=12%  Similarity=0.054  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----------------
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----------------  167 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~----------------  167 (274)
                      .++.+||=+|+  |.|..+..+++ .|+++++++.+++.++.+++.-..    .-+.....|+.                
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~----~vi~~~~~d~~~~~~~~~~~~~~~~~~  302 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE----AIIDRNAEGYRFWKDENTQDPKEWKRF  302 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC----EEEETTTTTCCSEEETTEECHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc----EEEecCcCcccccccccccchHHHHHH
Confidence            45679999996  45677777777 889999999999999988764211    00111011110                


Q ss_pred             -C----CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          168 -T----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       168 -~----~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                       +    ......+|+|+..-.     .    ..+....++|+++|.++++.
T Consensus       303 ~~~i~~~t~g~g~Dvvid~~G-----~----~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          303 GKRIRELTGGEDIDIVFEHPG-----R----ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHTSCCEEEEEECSC-----H----HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHhCCCCCcEEEEcCC-----c----hhHHHHHHHhhCCcEEEEEe
Confidence             0    112357999985321     1    34677888999999998754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.84  E-value=2.5  Score=34.77  Aligned_cols=105  Identities=15%  Similarity=0.160  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCCc--c--h-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024008          107 LPKGRALVPGCGT--G--Y-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~--G--~-~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++.  |  . .+..|++.|++|+.++.++...+.+.+.....   .++.++.+|+.+...          
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL---GVKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH---TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            3467888888753  3  2 34566668999999999876555554444333   246789999987211          


Q ss_pred             -CCCeeEEEeccccc----------ccChhHH-----------HHHHHHHHhcccCCcEEEEEEc
Q 024008          172 -TELFDLIFDYTFFC----------AIEPEMR-----------AAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 -~~~fD~v~~~~~~~----------~~~~~~~-----------~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                       .++.|+++.+..+.          ..+.+.+           -.+++.+...++.+|.++....
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence             14789999876543          1232332           2344566667777888776553

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=89.80  E-value=5.2  Score=31.97  Aligned_cols=59  Identities=14%  Similarity=0.122  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .++++|=.|++.|.   .+..|++.|++|+.++.+++.++.+...+...+  .++.++.+|+.+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   66 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRN   66 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            45678888876552   234555689999999999998888777765543  468888888875

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=89.75  E-value=2.4  Score=34.39  Aligned_cols=76  Identities=17%  Similarity=0.039  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          108 PKGRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~----~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      .++++|=.|++.| .+    ..|++.|++|++++.++..++...+.+...+...++.++.+|+.+...           .
T Consensus        31 ~~k~vlVTGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            3567888876544 43    344458999999999988777666655544433468889999986211           1


Q ss_pred             CCeeEEEecccc
Q 024008          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~fD~v~~~~~~  184 (274)
                      +++|+|+.+...
T Consensus       110 g~iD~vi~~Ag~  121 (279)
T 1xg5_A          110 SGVDICINNAGL  121 (279)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999987543

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=89.72  E-value=0.74  Score=39.35  Aligned_cols=90  Identities=19%  Similarity=0.139  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCCh---HHHHHHHHHhhcCCCCcceEEEEc-ccCCCC--CCCCeeEEEe
Q 024008          109 KGRALVPGCGT-GYDVVAMAS-PERYVVGLEISD---IAIKKAEELSSSLPNAKFVSFLKA-DFFTWC--PTELFDLIFD  180 (274)
Q Consensus       109 ~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~---~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~--~~~~fD~v~~  180 (274)
                      +.+||-+|+|. |..+..+++ .|++|+++|.++   +..+.+++.-        .+.+.. |+.+..  ....+|+|+.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~g--------a~~v~~~~~~~~~~~~~~~~d~vid  252 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK--------TNYYNSSNGYDKLKDSVGKFDVIID  252 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHT--------CEEEECTTCSHHHHHHHCCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhC--------CceechHHHHHHHHHhCCCCCEEEE
Confidence            78999999832 444555555 688999999988   7777776542        111211 111100  0146999986


Q ss_pred             cccccccChhHHHHHH-HHHHhcccCCcEEEEEEc
Q 024008          181 YTFFCAIEPEMRAAWA-QKIKDFLKPDGELITLMF  214 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l-~~l~~~L~~gG~l~~~~~  214 (274)
                      .....        ..+ +...++|+++|.++....
T Consensus       253 ~~g~~--------~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          253 ATGAD--------VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CCCCC--------THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCCh--------HHHHHHHHHHHhcCCEEEEEec
Confidence            53321        134 778899999999887643

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=89.66  E-value=1.8  Score=34.86  Aligned_cols=76  Identities=14%  Similarity=0.002  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ..+++||=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+...           .
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            446788888876552   234455589999999999988877776665543  468999999986211           1


Q ss_pred             CCeeEEEecccc
Q 024008          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~fD~v~~~~~~  184 (274)
                      ++.|+++.+...
T Consensus       105 g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 GRCDVLVNNAGV  116 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            468999987654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.52  E-value=1.9  Score=36.08  Aligned_cols=88  Identities=17%  Similarity=0.118  Sum_probs=55.5

Q ss_pred             CeEEEEcCCc-c-hhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          110 GRALVPGCGT-G-YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       110 ~~vLDiG~G~-G-~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      .+|.=||+|. | .++..+++.|.  +|+++|.+++.++.+++.    +.   +.-...|..+ .  -...|+|+..   
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G~---~~~~~~~~~~~~--~~~aDvVila---  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKVE--DFSPDFVMLS---  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCTTGGG--GGCCSEEEEC---
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----CC---cchhcCCHHHHh--hccCCEEEEe---
Confidence            6899998764 2 23344555787  999999999888777643    21   1112233322 1  2357988854   


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                        +++.....++.++...+++|.+++-
T Consensus       102 --vp~~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          102 --SPVRTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             --SCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             --CCHHHHHHHHHHHhhccCCCcEEEE
Confidence              3334456778888888988876543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=89.37  E-value=1.8  Score=34.68  Aligned_cols=102  Identities=13%  Similarity=-0.017  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCcchhH----HHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          109 KGRALVPGCGTGYDV----VAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~----~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      +++||=.|++ |..+    ..|++ .|++|++++.++.......+.+...+  .++.++.+|+.+...           .
T Consensus         4 ~k~vlITGas-ggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            4 IHVALVTGGN-KGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCEEEESSCS-SHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4577766654 5444    34555 78999999999877766665554433  468899999986210           1


Q ss_pred             CCeeEEEeccccccc-----C-hhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024008          173 ELFDLIFDYTFFCAI-----E-PEMR-----------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~-----~-~~~~-----------~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +++|+|+.+......     + .+..           ..+++.+.+.++++|.++...
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence            378999977543211     1 1221           234455666666677776644

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=89.36  E-value=3.4  Score=29.34  Aligned_cols=106  Identities=11%  Similarity=-0.004  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024008          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~  179 (274)
                      ..+|+=+|+  |..+..++    +.|.+|+++|.+++.++.++    ..    ...++.+|..+.     .....+|+|+
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~~----~~~~~~~d~~~~~~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY----ATHAVIANATEENELLSLGIRNFEYVI   75 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT----TT----CSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh----CCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence            457999997  55554443    37889999999887554332    11    135566776541     1124689988


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      ....-.    ......+....+.+.+. .++...              +.....+.++..|...
T Consensus        76 ~~~~~~----~~~~~~~~~~~~~~~~~-~ii~~~--------------~~~~~~~~l~~~g~~~  120 (144)
T 2hmt_A           76 VAIGAN----IQASTLTTLLLKELDIP-NIWVKA--------------QNYYHHKVLEKIGADR  120 (144)
T ss_dssp             ECCCSC----HHHHHHHHHHHHHTTCS-EEEEEC--------------CSHHHHHHHHHHTCSE
T ss_pred             ECCCCc----hHHHHHHHHHHHHcCCC-eEEEEe--------------CCHHHHHHHHHcCCCE
Confidence            643211    12222334444455665 555443              2223345666677653

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.32  E-value=7.3  Score=31.23  Aligned_cols=60  Identities=10%  Similarity=0.035  Sum_probs=45.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   71 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITD   71 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCC
Confidence            446788988887763   345566689999999999988887777665544  468888888875

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=89.31  E-value=2.9  Score=34.36  Aligned_cols=105  Identities=17%  Similarity=0.092  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC--hHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS--DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+  ....+...+.....+  .++.++.+|+.+...          
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            456788988876653   234555689999999886  344444444444443  468899999986210          


Q ss_pred             -CCCeeEEEecccccc-------cChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024008          172 -TELFDLIFDYTFFCA-------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 -~~~fD~v~~~~~~~~-------~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~  213 (274)
                       .++.|+++.+.....       ++.+.+.           .+++.+...++++|.|+...
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence             147899998755422       2333322           34566777788888877654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.26  E-value=5.8  Score=32.17  Aligned_cols=59  Identities=17%  Similarity=0.077  Sum_probs=42.8

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d   84 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTS   84 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCC
Confidence            35688888877653   234556689999999999988877777665543  468888888865

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=88.66  E-value=2.8  Score=33.57  Aligned_cols=76  Identities=17%  Similarity=0.044  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ..++++|=.|++.|.   .+..|++.|++|++++.+++.++...+.+...+  .++.++.+|+.+...           .
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            345778888875542   234455589999999999887766655544333  468889999986210           1


Q ss_pred             -CCeeEEEecccc
Q 024008          173 -ELFDLIFDYTFF  184 (274)
Q Consensus       173 -~~fD~v~~~~~~  184 (274)
                       ++.|+++.+...
T Consensus        85 ~g~id~lv~~Ag~   97 (260)
T 2ae2_A           85 HGKLNILVNNAGI   97 (260)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence             578999987543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=88.47  E-value=6.7  Score=31.65  Aligned_cols=58  Identities=9%  Similarity=-0.056  Sum_probs=42.1

Q ss_pred             CCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          109 KGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       109 ~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d   64 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTD   64 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCC
Confidence            4678888876653   234555689999999999988887777665543  467888888865

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=88.35  E-value=6.5  Score=31.47  Aligned_cols=103  Identities=22%  Similarity=0.145  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCc-chhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008          108 PKGRALVPGCGT-GYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  171 (274)
                      .++++|=.|++. |..+.    .|++.|++|+.++.++...+.+.+.....+   ...++.+|+.+..           .
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcC---CcEEEEccCCCHHHHHHHHHHHHHH
Confidence            456788888752 44443    445589999999987621122222211111   2467888987621           1


Q ss_pred             CCCeeEEEecccccc-----------cChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024008          172 TELFDLIFDYTFFCA-----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~-----------~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .++.|+++.+..+..           .+.+...           .+++.+...++++|.++...
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS  148 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence            247899998765432           3333322           23345556665567776654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=88.15  E-value=5.6  Score=31.77  Aligned_cols=73  Identities=15%  Similarity=0.071  Sum_probs=51.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~  172 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+++..+.......     .++.++.+|+.+..           ..
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----PAAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            346788888876552   344556689999999999887776655542     35889999998621           12


Q ss_pred             CCeeEEEecccc
Q 024008          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~fD~v~~~~~~  184 (274)
                      ++.|+++.+...
T Consensus        81 g~id~lv~~Ag~   92 (259)
T 4e6p_A           81 GGLDILVNNAAL   92 (259)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            378999987554

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=88.13  E-value=2.7  Score=33.94  Aligned_cols=78  Identities=14%  Similarity=0.045  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD  176 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+....+.++.+|+.+..       .-++.|
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            446788888876552   2345556899999999998877766655544322246788899987621       124789


Q ss_pred             EEEecccc
Q 024008          177 LIFDYTFF  184 (274)
Q Consensus       177 ~v~~~~~~  184 (274)
                      +++.+...
T Consensus        88 ~lv~nAg~   95 (267)
T 3t4x_A           88 ILINNLGI   95 (267)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99987543

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=88.11  E-value=0.95  Score=37.94  Aligned_cols=94  Identities=16%  Similarity=0.086  Sum_probs=59.0

Q ss_pred             CCC-eEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc--cCCCCCCCCeeEEEec
Q 024008          108 PKG-RALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFTWCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~-~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~fD~v~~~  181 (274)
                      ++. +||-.|+  |.|..+..+++ .|+++++++.+++.++.+++.-.    ..-++....+  .........+|+|+..
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa----~~v~~~~~~~~~~~~~~~~~~~d~vid~  224 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA----SEVISREDVYDGTLKALSKQQWQGAVDP  224 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTC----SEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----cEEEECCCchHHHHHHhhcCCccEEEEC
Confidence            343 8999996  56677777776 78899999998888888875321    1101110111  1111223469999854


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ..     .    ..+....++++++|++++...
T Consensus       225 ~g-----~----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          225 VG-----G----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             CC-----T----HHHHHHHTTEEEEEEEEECCC
T ss_pred             Cc-----H----HHHHHHHHhhcCCCEEEEEec
Confidence            22     1    246788899999999887643

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=88.02  E-value=5.4  Score=32.06  Aligned_cols=67  Identities=12%  Similarity=0.131  Sum_probs=45.1

Q ss_pred             CeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCCe
Q 024008          110 GRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF  175 (274)
Q Consensus       110 ~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~~f  175 (274)
                      ++||=-|++.|.   .+..|++.|++|+.+|.+++..+...+.   .   .++.++.+|+.+..           .-++.
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~---~---~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE---R---PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT---C---TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---c---CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            467777877773   3456667999999999998766554332   1   45788888987621           11467


Q ss_pred             eEEEecc
Q 024008          176 DLIFDYT  182 (274)
Q Consensus       176 D~v~~~~  182 (274)
                      |+++.+.
T Consensus        77 DiLVNNA   83 (247)
T 3ged_A           77 DVLVNNA   83 (247)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            7777654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=87.77  E-value=8.4  Score=30.86  Aligned_cols=61  Identities=18%  Similarity=0.163  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-CCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSS-LPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++.+.+.+.. .+ ..++.++.+|+.+
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~   70 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFP-GARLFASVCDVLD   70 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST-TCCEEEEECCTTC
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEeCCCCC
Confidence            456788888887663   2445566899999999999888777666543 22 1347888888865

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=87.59  E-value=5.4  Score=32.36  Aligned_cols=61  Identities=20%  Similarity=0.163  Sum_probs=44.5

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ...++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d   92 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQ   92 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence            4567788988887653   344556689999999999887777666655443  468888888875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=87.54  E-value=2.6  Score=32.70  Aligned_cols=127  Identities=9%  Similarity=-0.001  Sum_probs=70.8

Q ss_pred             eEEEEcCCcc--h-hHHHhh-CCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEec
Q 024008          111 RALVPGCGTG--Y-DVVAMA-SPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDY  181 (274)
Q Consensus       111 ~vLDiG~G~G--~-~~~~l~-~~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~~  181 (274)
                      +||=.|++.|  . .+..|+ +.|++|++++.+++ .++....   ..   .++.++.+|+.+..    .-..+|+|+.+
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~---~~---~~~~~~~~D~~d~~~~~~~~~~~d~vv~~   80 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII---DH---ERVTVIEGSFQNPGXLEQAVTNAEVVFVG   80 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH---TS---TTEEEEECCTTCHHHHHHHHTTCSEEEES
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc---CC---CceEEEECCCCCHHHHHHHHcCCCEEEEc
Confidence            4887874332  2 234555 58999999999876 4443321   11   46899999998621    11468999977


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEE-EEEccCCCCCCCC-----------CcccCHHHHHHHHhcCCCcEEEEee
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELI-TLMFPISDHVGGP-----------PYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .....+  . ...+++.+.+.  ..|.++ +..........+.           .|..++....++++..|+...-+..
T Consensus        81 ag~~n~--~-~~~~~~~~~~~--~~~~iv~iSs~~~~~~~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~~~i~~~~vrp  154 (221)
T 3r6d_A           81 AMESGS--D-MASIVKALSRX--NIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRL  154 (221)
T ss_dssp             CCCCHH--H-HHHHHHHHHHT--TCCEEEEEEETTTTSCSCHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             CCCCCh--h-HHHHHHHHHhc--CCCeEEEEeeceecCCCCcccccccccccccHHHHHHHHHHHHHHhCCCCEEEEec
Confidence            654322  1 23333333321  124444 4433322211110           2334567788888888988766655

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.45  E-value=4.2  Score=32.94  Aligned_cols=86  Identities=17%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             eEEEEcCCc-ch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024008          111 RALVPGCGT-GY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       111 ~vLDiG~G~-G~-~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  188 (274)
                      +|.=||||. |. ++..+.+.|.+|+++|.+++.++.+.+.    +...  . ...|..+.   ...|+|+..     .+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~--~-~~~~~~~~---~~~D~vi~a-----v~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QLVD--E-AGQDLSLL---QTAKIIFLC-----TP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TSCS--E-EESCGGGG---TTCSEEEEC-----SC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhC----CCCc--c-ccCCHHHh---CCCCEEEEE-----CC
Confidence            577788765 22 2234445788999999999887766432    2111  1 12333222   457988853     34


Q ss_pred             hhHHHHHHHHHHhcccCCcEEEE
Q 024008          189 PEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       189 ~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      +.....++..+...++++..++-
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~vv~   89 (279)
T 2f1k_A           67 IQLILPTLEKLIPHLSPTAIVTD   89 (279)
T ss_dssp             HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEE
Confidence            44556778888888888776543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=87.43  E-value=10  Score=30.75  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=43.6

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .+++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d   88 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSD   88 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            446788888877653   234555689999999999988887777665543  468888888865

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=87.36  E-value=5.3  Score=32.44  Aligned_cols=105  Identities=17%  Similarity=0.110  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHH-HHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIA-IKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|++++.++.. .+...+.+...+  .++.++.+|+.+...           
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345678877776552   233445589999999987643 343333333332  458889999876210           


Q ss_pred             CCCeeEEEecccccc------cChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024008          172 TELFDLIFDYTFFCA------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~------~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .++.|+++.+.....      .+.+...           .+++.+.+.++.+|.++...
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            146899998754332      2223322           23455666666678777654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=87.27  E-value=10  Score=30.57  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeC-------------ChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEI-------------SDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~-------------s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+++|.             +++.++...+.....+  .++.++.+|+.+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   88 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRD   88 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence            456788888887663   34556668999999997             6777777666665544  468888888875

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=87.01  E-value=3.5  Score=32.96  Aligned_cols=72  Identities=10%  Similarity=-0.010  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CC
Q 024008          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~~  173 (274)
                      .++++|=.|++.|.   .+..|++.|++|+.++.+++..+...+.+   +  .++.++.+|+.+...           .+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---G--DAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---G--GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45678888876552   23445558999999999987666554433   1  458889999876211           13


Q ss_pred             CeeEEEecccc
Q 024008          174 LFDLIFDYTFF  184 (274)
Q Consensus       174 ~fD~v~~~~~~  184 (274)
                      +.|+++.+..+
T Consensus        79 ~iD~lv~nAg~   89 (254)
T 1hdc_A           79 SVDGLVNNAGI   89 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999987543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=86.88  E-value=11  Score=32.24  Aligned_cols=98  Identities=13%  Similarity=0.008  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .+.+||.++.+.|-++..++..  .++.+.-|--.....+.|+..+++.+ .+++...  .+ .....||+|+....=  
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~--~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~-~~~~~~~~v~~~lpk--  110 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH--KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYPQQPGVVLIKVPK--  110 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG--CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS-CCCSSCSEEEEECCS--
T ss_pred             CCCCEEEECCCCCHHHHhhccC--CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc-ccccCCCEEEEEcCC--
Confidence            4468999999999999888754  33444435555556677777777643 3665433  22 234679998853221  


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                       ........+..+...|++|+.+++..
T Consensus       111 -~~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A          111 -TLALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             -CHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             -CHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence             22456778899999999999987765

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=86.78  E-value=2.8  Score=36.71  Aligned_cols=93  Identities=13%  Similarity=0.020  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----------------
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----------------  167 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~----------------  167 (274)
                      .++.+||-.|+  |.|..+..+++ .|+++++++.+++.++.+++.-    ...-+.....|+.                
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lG----a~~~i~~~~~~~~~~~~~~~~~~~~~~~~  294 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALG----CDLVINRAELGITDDIADDPRRVVETGRK  294 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT----CCCEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC----CCEEEecccccccccccccccccchhhhH
Confidence            45679999996  45666777766 8899999999999888886532    1111111111210                


Q ss_pred             ------CCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          168 ------TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       168 ------~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                            +.. ...+|+|+....     .    ..+....++++++|.++...
T Consensus       295 ~~~~v~~~~-g~g~Dvvid~~G-----~----~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          295 LAKLVVEKA-GREPDIVFEHTG-----R----VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHH-SSCCSEEEECSC-----H----HHHHHHHHHSCTTCEEEESC
T ss_pred             HHHHHHHHh-CCCceEEEECCC-----c----hHHHHHHHHHhcCCEEEEEe
Confidence                  011 346999985422     1    24577788999999988754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.68  E-value=11  Score=30.12  Aligned_cols=61  Identities=18%  Similarity=0.115  Sum_probs=44.5

Q ss_pred             CCCCeEEEEcC-Ccch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGC-GTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~-G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|+ |.|.   .+..|++.|++|+.++.+++.++...+.+...+ ..++.++.+|+.+
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~   84 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTS   84 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTC
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCC
Confidence            44678888887 5543   345666799999999999988877777664432 2468889999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=86.06  E-value=0.46  Score=40.79  Aligned_cols=94  Identities=11%  Similarity=0.034  Sum_probs=57.6

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEe
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~  180 (274)
                      .++.+||=+|+  |.|..+..+++ .|++|+++. +++.++.+++.-    -..-++....|+.+   ....+.+|+|+.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lG----a~~vi~~~~~~~~~~v~~~t~g~~d~v~d  237 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRG----AEEVFDYRAPNLAQTIRTYTKNNLRYALD  237 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTT----CSEEEETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcC----CcEEEECCCchHHHHHHHHccCCccEEEE
Confidence            55679999998  37888888887 888999885 888888776542    11101111112111   011245999984


Q ss_pred             cccccccChhHHHHHHHHHHhcc-cCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L-~~gG~l~~~~  213 (274)
                      .-.     .   ...+....++| +++|+++...
T Consensus       238 ~~g-----~---~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          238 CIT-----N---VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             SSC-----S---HHHHHHHHHHSCTTCEEEEESS
T ss_pred             CCC-----c---hHHHHHHHHHhhcCCCEEEEEe
Confidence            321     1   13456777888 5999988754

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=85.91  E-value=12  Score=30.07  Aligned_cols=60  Identities=18%  Similarity=0.221  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeC-------------ChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEI-------------SDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~-------------s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.             +++.++...+.....+  .++.++.+|+.+
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~   84 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRD   84 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence            456788888887663   34555668999999998             5666666655554443  468888888865

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=85.80  E-value=2.5  Score=36.06  Aligned_cols=67  Identities=19%  Similarity=0.195  Sum_probs=42.0

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEec
Q 024008          107 LPKGRALVPGCG-TGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~~  181 (274)
                      ...++||=+||| .|......+.....|+..|.+.+.++.+++.         +..+..|+.+..    .-..+|+|+..
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEF---------ATPLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTT---------SEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhcc---------CCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence            345789999985 3333333334567999999999887766432         455667776511    11468999865


Q ss_pred             c
Q 024008          182 T  182 (274)
Q Consensus       182 ~  182 (274)
                      .
T Consensus        85 ~   85 (365)
T 3abi_A           85 L   85 (365)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=85.79  E-value=12  Score=30.98  Aligned_cols=60  Identities=18%  Similarity=0.244  Sum_probs=41.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC------------hHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+++|.+            ++.++...+.....+  .++.++.+|+.+
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d  118 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRD  118 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence            445788888877663   344556689999999976            555655555444443  468888889865

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=85.79  E-value=2.6  Score=35.05  Aligned_cols=91  Identities=14%  Similarity=0.118  Sum_probs=55.8

Q ss_pred             CCCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-C-CCCCCeeEEEe
Q 024008          106 ALPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-W-CPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~v~~  180 (274)
                      ..++.+||=+|  .|.|..+..+++ .|++|++++ +++..+.+++.-    . +  ..+..+-.+ . ..-..+|+|+.
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lG----a-~--~~i~~~~~~~~~~~~~g~D~v~d  221 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALG----A-E--QCINYHEEDFLLAISTPVDAVID  221 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHT----C-S--EEEETTTSCHHHHCCSCEEEEEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcC----C-C--EEEeCCCcchhhhhccCCCEEEE
Confidence            34567999886  445777777777 788999997 555577666532    1 1  122111111 0 01146999984


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .-     ..+    .+....++|+++|.++...
T Consensus       222 ~~-----g~~----~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          222 LV-----GGD----VGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             SS-----CHH----HHHHHGGGEEEEEEEEECC
T ss_pred             CC-----CcH----HHHHHHHhccCCCEEEEeC
Confidence            32     111    2377889999999988753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=85.74  E-value=10  Score=28.97  Aligned_cols=92  Identities=15%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             eEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024008          111 RALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~  184 (274)
                      +||=.|+ +|..+..+    ++.|.+|++++-++.......         .+++++.+|+.+...  -..+|+|+.....
T Consensus         2 kvlVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIGA-TGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             eEEEEcC-CchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            5676664 45444444    448999999999886544321         358899999976321  1468999976544


Q ss_pred             cccChhHHHHHHHHHHhcccCC--cEEEEE
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPD--GELITL  212 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~g--G~l~~~  212 (274)
                      ..-...........+.+.++..  +.+++.
T Consensus        72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~  101 (221)
T 3ew7_A           72 SPDEAEKHVTSLDHLISVLNGTVSPRLLVV  101 (221)
T ss_dssp             STTTTTSHHHHHHHHHHHHCSCCSSEEEEE
T ss_pred             CccccchHHHHHHHHHHHHHhcCCceEEEE
Confidence            3211111122334444445443  455543

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=85.68  E-value=13  Score=30.31  Aligned_cols=60  Identities=10%  Similarity=0.199  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC------------hHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+++|.+            ++.++...+.+...+  .++.++.+|+.+
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~  100 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRD  100 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCC
Confidence            456788988887763   345566689999999987            566665555554443  468888888865

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=85.58  E-value=0.66  Score=39.79  Aligned_cols=92  Identities=16%  Similarity=0.048  Sum_probs=55.9

Q ss_pred             CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC-CCCCCCeeEEE
Q 024008          107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT-WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~-~~~~~~fD~v~  179 (274)
                      .++.+||=.|  .|.|..+..+++ .|++|++++ +++..+.+++.    +. +  ..+..   |+.+ ......+|+|+
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~l----Ga-~--~v~~~~~~~~~~~~~~~~g~D~vi  253 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKL----GA-D--DVIDYKSGSVEEQLKSLKPFDFIL  253 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHT----TC-S--EEEETTSSCHHHHHHTSCCBSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHc----CC-C--EEEECCchHHHHHHhhcCCCCEEE
Confidence            3567999998  356777777776 788999998 67767766543    21 1  11111   1111 11124699998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ....-.       ...+....++++++|.++...
T Consensus       254 d~~g~~-------~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          254 DNVGGS-------TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             ESSCTT-------HHHHGGGGBCSSSCCEEEESC
T ss_pred             ECCCCh-------hhhhHHHHHhhcCCcEEEEeC
Confidence            542211       123466778899999988754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=85.56  E-value=4.4  Score=32.65  Aligned_cols=76  Identities=17%  Similarity=0.073  Sum_probs=53.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-CCCCcceEEEEcccCCCCC-----------
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSS-LPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~-----------  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++.+.+.+.. .+  .++.++.+|+.+...           
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            456788888876653   2345556899999999998887776655543 22  468999999987321           


Q ss_pred             CCCeeEEEecccc
Q 024008          172 TELFDLIFDYTFF  184 (274)
Q Consensus       172 ~~~fD~v~~~~~~  184 (274)
                      .++.|+++.+...
T Consensus        96 ~g~id~lv~nAg~  108 (266)
T 4egf_A           96 FGGLDVLVNNAGI  108 (266)
T ss_dssp             HTSCSEEEEECCC
T ss_pred             cCCCCEEEECCCc
Confidence            1478999987543

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.55  E-value=4.6  Score=32.71  Aligned_cols=76  Identities=14%  Similarity=0.087  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCCC-----------C
Q 024008          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~-----------~  172 (274)
                      .++++|=.|++.|.   .+..|++.|++|++++.+++.++...+.+...+. ..++.++.+|+.+...           .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            45678877765552   2344555899999999998877766655544321 1268899999986210           1


Q ss_pred             CCeeEEEeccc
Q 024008          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~fD~v~~~~~  183 (274)
                      ++.|+++.+..
T Consensus        85 g~iD~lv~nAg   95 (280)
T 1xkq_A           85 GKIDVLVNNAG   95 (280)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36899998754

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=85.55  E-value=11  Score=29.51  Aligned_cols=71  Identities=18%  Similarity=0.169  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCe
Q 024008          107 LPKGRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~----~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~f  175 (274)
                      ..+++||=.|++. ..+    ..|++.|++|++++.++...+...+..      ..++++.+|+.+.       ...+++
T Consensus         5 ~~~~~vlVTGasg-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~i   77 (244)
T 1cyd_A            5 FSGLRALVTGAGK-GIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPV   77 (244)
T ss_dssp             CTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc------cCCCcEEecCCCHHHHHHHHHHcCCC
Confidence            3456788887654 444    344458999999999887665544432      2366778898762       112468


Q ss_pred             eEEEecccc
Q 024008          176 DLIFDYTFF  184 (274)
Q Consensus       176 D~v~~~~~~  184 (274)
                      |+++.+...
T Consensus        78 d~vi~~Ag~   86 (244)
T 1cyd_A           78 DLLVNNAAL   86 (244)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999987553

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=85.43  E-value=5.7  Score=32.22  Aligned_cols=60  Identities=17%  Similarity=0.080  Sum_probs=42.8

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++..+...+.+...+  .++.++.+|+.+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   93 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSE   93 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCC
Confidence            456788888876653   234555689999999998877766666554443  468888888865

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=85.34  E-value=4.3  Score=33.52  Aligned_cols=113  Identities=9%  Similarity=0.062  Sum_probs=65.0

Q ss_pred             CeEEEEcCCcch--hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          110 GRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~--~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      .+|.=||+|.=.  .+..|++.|.+|+++|.+++.++.+.+.    +    ......+..+..  ...|+|+..-.    
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~----g----~~~~~~~~~e~~--~~aDvvi~~vp----   73 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE----G----ACGAAASAREFA--GVVDALVILVV----   73 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CSEEESSSTTTT--TTCSEEEECCS----
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc----C----CccccCCHHHHH--hcCCEEEEECC----
Confidence            578889876422  2334455889999999999888776543    2    111233443322  34688885322    


Q ss_pred             ChhHHHHHH---HHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          188 EPEMRAAWA---QKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       188 ~~~~~~~~l---~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ++.....++   +.+...+++|..++-.. ..        ...+..++.+.+.+.|...+.
T Consensus        74 ~~~~~~~v~~~~~~l~~~l~~g~ivv~~s-t~--------~~~~~~~~~~~~~~~g~~~~~  125 (303)
T 3g0o_A           74 NAAQVRQVLFGEDGVAHLMKPGSAVMVSS-TI--------SSADAQEIAAALTALNLNMLD  125 (303)
T ss_dssp             SHHHHHHHHC--CCCGGGSCTTCEEEECS-CC--------CHHHHHHHHHHHHTTTCEEEE
T ss_pred             CHHHHHHHHhChhhHHhhCCCCCEEEecC-CC--------CHHHHHHHHHHHHHcCCeEEe
Confidence            122344555   56667788877654322 11        112345666777777765544

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=85.33  E-value=13  Score=32.83  Aligned_cols=95  Identities=19%  Similarity=0.195  Sum_probs=59.1

Q ss_pred             CeEEEEcCCc-c-hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------------CCC-CcceEEEEcccCCCCCCC
Q 024008          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS-------------LPN-AKFVSFLKADFFTWCPTE  173 (274)
Q Consensus       110 ~~vLDiG~G~-G-~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-------------~~~-~~~v~~~~~d~~~~~~~~  173 (274)
                      .+|.-||+|. | ..+..++..|..|+++|.+++.++.++.....             ... .....+ ..|.. .  -.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~-~--~~  113 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK-E--LS  113 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG-G--GT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH-H--HC
Confidence            5799999987 3 34456667899999999999988877653210             000 011222 44442 1  24


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      ..|+|+..-. .  +.+....++.++...++++.+++.
T Consensus       114 ~aDlVIeaVp-e--~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          114 TVDLVVEAVF-E--DMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             TCSEEEECCC-S--CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCCEEEEcCC-C--CHHHHHHHHHHHHhhCCCCeEEEe
Confidence            5798885432 2  112346778888888988877664

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=85.29  E-value=3.6  Score=32.58  Aligned_cols=74  Identities=11%  Similarity=0.052  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCe
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~f  175 (274)
                      ..++++||=.|++.|.   .+..|++.|++|+.++.+++.++...+...     .++.+..+|+.+.       ...++.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~i   85 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSNL   85 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCCC
Confidence            3456788988876652   234555589999999999988777666553     3588899998761       122478


Q ss_pred             eEEEecccc
Q 024008          176 DLIFDYTFF  184 (274)
Q Consensus       176 D~v~~~~~~  184 (274)
                      |+++.+...
T Consensus        86 d~li~~Ag~   94 (249)
T 3f9i_A           86 DILVCNAGI   94 (249)
T ss_dssp             SEEEECCC-
T ss_pred             CEEEECCCC
Confidence            999987654

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=85.16  E-value=11  Score=30.64  Aligned_cols=60  Identities=18%  Similarity=0.094  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   68 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGD   68 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCC
Confidence            346778888877653   334556689999999999988877776665443  467888888765

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=85.12  E-value=6.8  Score=31.18  Aligned_cols=72  Identities=19%  Similarity=0.125  Sum_probs=48.3

Q ss_pred             CeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCCe
Q 024008          110 GRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF  175 (274)
Q Consensus       110 ~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~~f  175 (274)
                      +++|=.|++.|.   .+..|++.|++|++++.+++..+...+.+...+  .++.++.+|+.+..           ..+++
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            467777765542   234455589999999999887766655554333  45888999998621           01478


Q ss_pred             eEEEeccc
Q 024008          176 DLIFDYTF  183 (274)
Q Consensus       176 D~v~~~~~  183 (274)
                      |+++.+..
T Consensus        81 d~lv~nAg   88 (256)
T 1geg_A           81 DVIVNNAG   88 (256)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99998754

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=85.10  E-value=7.8  Score=31.29  Aligned_cols=61  Identities=13%  Similarity=0.061  Sum_probs=43.8

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ...++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d   86 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTS   86 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCC
Confidence            3556788888876652   334555689999999999988877776665543  457888888765

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.01  E-value=3.4  Score=34.04  Aligned_cols=77  Identities=12%  Similarity=0.084  Sum_probs=50.8

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCCC-----------
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~-----------  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|++++.+++.++...+.+...+. ..++.++.+|+.+...           
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            445678877765542   2344555899999999998877766555543321 1268899999986211           


Q ss_pred             CCCeeEEEeccc
Q 024008          172 TELFDLIFDYTF  183 (274)
Q Consensus       172 ~~~fD~v~~~~~  183 (274)
                      .++.|+++.+..
T Consensus       104 ~g~iD~lvnnAG  115 (297)
T 1xhl_A          104 FGKIDILVNNAG  115 (297)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            136899998754

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=84.91  E-value=10  Score=30.62  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=41.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|++++.+++..+.....+...+  .++.++.+|+.+
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d   88 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG--LEGRGAVLNVND   88 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT--CCCEEEECCTTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEEeCCC
Confidence            345678877766552   234555689999999999888777666654433  357778888764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=84.36  E-value=3.6  Score=33.88  Aligned_cols=76  Identities=14%  Similarity=0.054  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ..+++||=.|++.|.   .+..|++.|++|+.++.+++.++.+.+.+...+  .++.++.+|+.+...           .
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            456789988887663   334555689999999999988888777665543  468999999987211           1


Q ss_pred             CCeeEEEecccc
Q 024008          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~fD~v~~~~~~  184 (274)
                      ++.|+++.+..+
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            478999987554

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=84.20  E-value=4.6  Score=31.89  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=47.4

Q ss_pred             CeEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHh-hcCCCCcceEEEEcccCCCCC-----------CC
Q 024008          110 GRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFLKADFFTWCP-----------TE  173 (274)
Q Consensus       110 ~~vLDiG~G~G~~~----~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~-----------~~  173 (274)
                      +++|=.|++. ..+    ..|++.|++|++++.++..++...+.. ...+  .++.++.+|+.+...           .+
T Consensus         3 k~vlItGasg-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASS-GNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA--DKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTG--GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4677777654 444    344558999999999987776655544 2222  468999999986211           13


Q ss_pred             CeeEEEeccc
Q 024008          174 LFDLIFDYTF  183 (274)
Q Consensus       174 ~fD~v~~~~~  183 (274)
                      ++|+++.+..
T Consensus        80 ~id~li~~Ag   89 (250)
T 2cfc_A           80 AIDVLVNNAG   89 (250)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998754

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=84.08  E-value=15  Score=29.38  Aligned_cols=61  Identities=18%  Similarity=0.055  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++.+.+.+...+ ..++.++.+|+.+
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~   71 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSD   71 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCC
Confidence            446778888876552   234555689999999999988877776665443 1368888888875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=83.94  E-value=7.1  Score=33.19  Aligned_cols=97  Identities=10%  Similarity=-0.014  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCcch--hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC------CCCcceEEEEcccCCCCCCCCeeEEEe
Q 024008          109 KGRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKADFFTWCPTELFDLIFD  180 (274)
Q Consensus       109 ~~~vLDiG~G~G~--~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~fD~v~~  180 (274)
                      ..+|.=||+|.=.  ++..|++.|..|+.+|.+++.++..++.....      .+..++.+ ..|..+..  ...|+|+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~--~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL--EGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH--TTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH--hcCCEEEE
Confidence            3589999987522  33455668889999999999888777653211      11112222 12222111  34688884


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .     ++......+++++...++++..++...
T Consensus       106 a-----Vp~~~~~~vl~~i~~~l~~~~ivvs~~  133 (356)
T 3k96_A          106 V-----VPSFAFHEVITRMKPLIDAKTRIAWGT  133 (356)
T ss_dssp             C-----CCHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             C-----CCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            3     344566788899999999887766543

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=83.84  E-value=15  Score=29.44  Aligned_cols=61  Identities=21%  Similarity=0.080  Sum_probs=41.6

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeC-ChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ...++++|=.|++.|.   .+..|++.|++|+.++. ++...+...+.....+  .++.++.+|+.+
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d   89 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQ   89 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCC
Confidence            3456788888876552   23455568999999988 6666666655554443  468888888875

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=83.68  E-value=16  Score=29.39  Aligned_cols=60  Identities=20%  Similarity=0.115  Sum_probs=40.9

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~   81 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLS   81 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCC
Confidence            446788888876552   234455589999999999887766655544333  357788888764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=83.66  E-value=15  Score=29.87  Aligned_cols=98  Identities=12%  Similarity=0.047  Sum_probs=55.0

Q ss_pred             CeEEEEcCCcchh--HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCC---CCeeEEEeccc
Q 024008          110 GRALVPGCGTGYD--VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPT---ELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~--~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~---~~fD~v~~~~~  183 (274)
                      ++|.=||+|.=..  +..|++.|.+|+++|.+++.++..++.-..............+... ....   ..+|+|+..  
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~--   81 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL--   81 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC--
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE--
Confidence            4788899874322  2344557889999999998887766542100000000000000001 0111   268988853  


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                         +++.....+++.+...++++..++..
T Consensus        82 ---v~~~~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           82 ---TKAQQLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             ---SCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             ---eccccHHHHHHHHHHhcCCCCEEEEe
Confidence               33345577888888888888766654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=83.56  E-value=13  Score=30.36  Aligned_cols=61  Identities=18%  Similarity=0.066  Sum_probs=42.9

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+. .++.++.+|+.+
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d  102 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGA-GNVIGVRLDVSD  102 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSS-SCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-CcEEEEEEeCCC
Confidence            456778888876553   3345556899999999998877777666654431 368888888865

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=83.48  E-value=16  Score=29.46  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=42.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC----------------hHHHHHHHHHhhcCCCCcceEEEEcccC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS----------------DIAIKKAEELSSSLPNAKFVSFLKADFF  167 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s----------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~  167 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+                ++.++...+.....+  .++.++.+|+.
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~   86 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDVR   86 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTT
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCCC
Confidence            456788988887763   345566689999999987                666666655554443  46888888987


Q ss_pred             C
Q 024008          168 T  168 (274)
Q Consensus       168 ~  168 (274)
                      +
T Consensus        87 ~   87 (286)
T 3uve_A           87 D   87 (286)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=83.35  E-value=16  Score=29.38  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~   74 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN   74 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Confidence            456788888876652   3445566899999999999888777766655432 1268888888865

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=83.16  E-value=3.8  Score=36.28  Aligned_cols=90  Identities=7%  Similarity=0.006  Sum_probs=58.2

Q ss_pred             CeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024008          110 GRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~  180 (274)
                      ++|+=+|||.  .+..+    ...|..|+.+|.+++.++.+.+.+       .+..+.||..++     ..-+..|++++
T Consensus         4 M~iiI~G~G~--vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            4 MKIIILGAGQ--VGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             EEEEEECCSH--HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            5788887764  44333    347889999999999998887765       377899999872     22357898885


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .     .+.+...-+...+.+.+-+.-..+...
T Consensus        75 ~-----t~~De~Nl~~~~~Ak~~~~~~~~iar~  102 (461)
T 4g65_A           75 V-----TNTDETNMAACQVAFTLFNTPNRIARI  102 (461)
T ss_dssp             C-----CSCHHHHHHHHHHHHHHHCCSSEEEEC
T ss_pred             E-----cCChHHHHHHHHHHHHhcCCccceeEe
Confidence            2     122333444455556555554444433

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=83.10  E-value=16  Score=29.01  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=38.9

Q ss_pred             CCCeEEEEcCCcch---hHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC
Q 024008          108 PKGRALVPGCGTGY---DVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF  167 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  167 (274)
                      .++++|=.|++.|.   .+..|++   .|++|++++.+++.++...+.+.......++.++.+|+.
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~   70 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLG   70 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTT
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence            34577877776652   3445666   699999999998877766555432211135777777775

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=82.93  E-value=16  Score=28.87  Aligned_cols=59  Identities=17%  Similarity=0.108  Sum_probs=41.0

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~   67 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG--AKVHVLELDVAD   67 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCC
Confidence            45678888876552   234455589999999999887776665554433  357888888865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=82.91  E-value=3.9  Score=27.85  Aligned_cols=64  Identities=14%  Similarity=-0.015  Sum_probs=42.8

Q ss_pred             CCeEEEEcCCcchhHHHh----hCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024008          109 KGRALVPGCGTGYDVVAM----ASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l----~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~  179 (274)
                      ..+|+=+|+  |..+..+    .+.| .+|+++|.+++.++...    .    ..+.+...|+.+..    .-..+|+|+
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~~~~~d~vi   74 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKALGGFDAVI   74 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence            357999998  5555444    3477 79999999998776655    1    23677788876511    113689888


Q ss_pred             ecc
Q 024008          180 DYT  182 (274)
Q Consensus       180 ~~~  182 (274)
                      ...
T Consensus        75 ~~~   77 (118)
T 3ic5_A           75 SAA   77 (118)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            654

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=82.82  E-value=17  Score=29.23  Aligned_cols=60  Identities=17%  Similarity=0.125  Sum_probs=41.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC------------hHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+            .+.++.........+  .++.++.+|+.+
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   82 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKD   82 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCC
Confidence            456788988887663   344555689999999986            555555554444433  468888888865

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=82.74  E-value=14  Score=29.74  Aligned_cols=103  Identities=12%  Similarity=0.082  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCC-cchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008          108 PKGRALVPGCG-TGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       108 ~~~~vLDiG~G-~G~~~----~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  171 (274)
                      .++++|=.|++ +|..+    ..|++.|++|+.++.+++.-+.+.+.....+   ++.++.+|+.+..           .
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45688888875 23333    4555689999999988752122222222121   3678889987621           1


Q ss_pred             CCCeeEEEeccccc----------ccChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024008          172 TELFDLIFDYTFFC----------AIEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~~~fD~v~~~~~~~----------~~~~~~~~-----------~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .++.|+++.+..+.          ..+.+...           .+++.+...++++|.++...
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  144 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS  144 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence            24789999875432          22333222           23345556666577777655

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=82.56  E-value=5.5  Score=32.49  Aligned_cols=73  Identities=12%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD  176 (274)
                      ..++++|=.|++.|.   .+..|++.|++|++++.++...+.+.+..     ..++.++.+|+.+..       .-++.|
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~iD   88 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSGAD   88 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCCEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCCCC
Confidence            456788888876552   23445558999999999988776665443     257899999998621       124789


Q ss_pred             EEEecccc
Q 024008          177 LIFDYTFF  184 (274)
Q Consensus       177 ~v~~~~~~  184 (274)
                      +++.+..+
T Consensus        89 ~lv~nAg~   96 (291)
T 3rd5_A           89 VLINNAGI   96 (291)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcC
Confidence            99987554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=82.52  E-value=5.4  Score=32.53  Aligned_cols=96  Identities=16%  Similarity=0.089  Sum_probs=56.9

Q ss_pred             CeEEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC---------CCC--------cceEEEEcccCCCC
Q 024008          110 GRALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSL---------PNA--------KFVSFLKADFFTWC  170 (274)
Q Consensus       110 ~~vLDiG~G~G--~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~---------~~~--------~~v~~~~~d~~~~~  170 (274)
                      .+|.=||+|.=  ..+..++..|.+|+++|.+++.++.+++.....         +..        .++.+ ..|..+..
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~~   83 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQAV   83 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHHh
Confidence            46788888752  223444558999999999999988887653110         000        11222 22322211


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                        ...|+|+..-. .  +.+....++.++...++++.+++.
T Consensus        84 --~~aDlVi~av~-~--~~~~~~~v~~~l~~~~~~~~il~s  119 (283)
T 4e12_A           84 --KDADLVIEAVP-E--SLDLKRDIYTKLGELAPAKTIFAT  119 (283)
T ss_dssp             --TTCSEEEECCC-S--CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             --ccCCEEEEecc-C--cHHHHHHHHHHHHhhCCCCcEEEE
Confidence              35688885322 1  113556778889999988876653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=82.49  E-value=9  Score=30.96  Aligned_cols=87  Identities=17%  Similarity=0.136  Sum_probs=51.5

Q ss_pred             eEEEEcCCc-ch-hHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEeccccc
Q 024008          111 RALVPGCGT-GY-DVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYTFFC  185 (274)
Q Consensus       111 ~vLDiG~G~-G~-~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~fD~v~~~~~~~  185 (274)
                      +|.=||+|. |. .+..+++.|.  +|+++|.+++.++.+++.    +...  . ...|..+..  . ..|+|+..    
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~----g~~~--~-~~~~~~~~~--~~~aDvVila----   69 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID--E-GTTSIAKVE--DFSPDFVMLS----   69 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS--E-EESCGGGGG--GTCCSEEEEC----
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC----CCcc--c-ccCCHHHHh--cCCCCEEEEc----
Confidence            577788764 22 2233444676  899999999887776532    2111  1 122332222  2 57888843    


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                       .++.....++.++...++++..++.
T Consensus        70 -vp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           70 -SPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             -SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence             3444556777888888888875553

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=82.35  E-value=3.6  Score=32.97  Aligned_cols=76  Identities=12%  Similarity=-0.005  Sum_probs=54.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+++..+...+.+...+  .++.++.+|+.+...           .
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            456788888877653   234555589999999999988877776665544  468999999987211           1


Q ss_pred             CCeeEEEecccc
Q 024008          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~fD~v~~~~~~  184 (274)
                      ++.|+++.+...
T Consensus        88 g~id~lv~nAg~   99 (256)
T 3gaf_A           88 GKITVLVNNAGG   99 (256)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987544

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=82.26  E-value=9.3  Score=29.74  Aligned_cols=69  Identities=7%  Similarity=0.008  Sum_probs=46.9

Q ss_pred             eEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--------CCCCCeeEEE
Q 024008          111 RALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------CPTELFDLIF  179 (274)
Q Consensus       111 ~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~~~fD~v~  179 (274)
                      +||=.|++.|.   .+..|++.|++|+.++.+++.++.+.+..     ..++.++.+|+.+.        .....+|+++
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            46777776552   23445558999999999998877666554     24588899999862        1124469998


Q ss_pred             ecccc
Q 024008          180 DYTFF  184 (274)
Q Consensus       180 ~~~~~  184 (274)
                      .+...
T Consensus        78 ~~Ag~   82 (230)
T 3guy_A           78 HSAGS   82 (230)
T ss_dssp             ECCCC
T ss_pred             EeCCc
Confidence            77543

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=82.20  E-value=11  Score=29.47  Aligned_cols=74  Identities=14%  Similarity=-0.044  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhh-cCCCCcceEEEEcccCCCC-----CC------C
Q 024008          109 KGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTWC-----PT------E  173 (274)
Q Consensus       109 ~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~-----~~------~  173 (274)
                      ++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+. ..+  .++.++.+|+.+..     ..      +
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG--VEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC--CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            3567777776542   234555589999999999887776665543 222  46889999998721     11      3


Q ss_pred             CeeEEEecccc
Q 024008          174 LFDLIFDYTFF  184 (274)
Q Consensus       174 ~fD~v~~~~~~  184 (274)
                      +.|+++.+..+
T Consensus        80 ~id~li~~Ag~   90 (235)
T 3l77_A           80 DVDVVVANAGL   90 (235)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            78999987654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=82.13  E-value=17  Score=28.75  Aligned_cols=62  Identities=19%  Similarity=0.170  Sum_probs=42.9

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC-CCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLP-NAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+.... ...++.++.+|+.+
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~   70 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD   70 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC
Confidence            345788888887653   234555689999999999988877766554321 11457888888875

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=82.06  E-value=14  Score=29.95  Aligned_cols=75  Identities=15%  Similarity=0.057  Sum_probs=45.5

Q ss_pred             CCCCeEEEEcCCc-chhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024008          107 LPKGRALVPGCGT-GYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------  170 (274)
                      ..++++|=.|++. |..+.    .|++.|++|++++.++..-+.+.+.....+   ++.++.+|+.+..           
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~   95 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG---SDLVVKCDVSLDEDIKNLKKFLEE   95 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            3457888888752 44443    445589999999988752222222222221   3678889987621           


Q ss_pred             CCCCeeEEEecccc
Q 024008          171 PTELFDLIFDYTFF  184 (274)
Q Consensus       171 ~~~~fD~v~~~~~~  184 (274)
                      ..++.|+++.+...
T Consensus        96 ~~g~iD~lv~~Ag~  109 (285)
T 2p91_A           96 NWGSLDIIVHSIAY  109 (285)
T ss_dssp             HTSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence            01478999987643

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=81.91  E-value=18  Score=28.80  Aligned_cols=60  Identities=18%  Similarity=0.125  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEE-eCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGL-EISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~i-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+ +.+++..+.........+  .++.++.+|+.+
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   69 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTN   69 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCC
Confidence            456788988887663   344556689999988 667766666665555443  457788888764

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=81.90  E-value=19  Score=29.07  Aligned_cols=58  Identities=19%  Similarity=0.218  Sum_probs=41.3

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ...++++|=.|++.|.   .+..|++.|++|+.+|.+++.++...+...     .++.++.+|+.+
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d   84 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSS   84 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCC
Confidence            4556788888877653   334555689999999999887766555431     357888888865

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=81.86  E-value=4.1  Score=34.11  Aligned_cols=130  Identities=15%  Similarity=0.073  Sum_probs=72.3

Q ss_pred             CeEEEEcCCcchhHHHhh----CCCCeEEEEeCCh----HHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCe
Q 024008          110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISD----IAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELF  175 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~f  175 (274)
                      ++||=.|+ +|..+..++    +.|.+|++++-++    .......... .    .+++++.+|+.+.      .....+
T Consensus        11 ~~IlVtGa-tG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~-~----~~v~~~~~Dl~d~~~l~~~~~~~~~   84 (346)
T 3i6i_A           11 GRVLIAGA-TGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE-D----KGAIIVYGLINEQEAMEKILKEHEI   84 (346)
T ss_dssp             CCEEEECT-TSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH-H----TTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CeEEEECC-CcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH-h----CCcEEEEeecCCHHHHHHHHhhCCC
Confidence            57888875 566655544    3788999998765    4333332222 1    3589999999762      111278


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC-----CcccCHHHHHHHHhcCCCcEEEEee
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP-----PYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      |+|+.......+.  ....+++.+.+. ..-.+++...++.......+     ++..++...++++++.|+...-+..
T Consensus        85 d~Vi~~a~~~n~~--~~~~l~~aa~~~-g~v~~~v~S~~g~~~~e~~~~~p~~~y~~sK~~~e~~l~~~g~~~tivrp  159 (346)
T 3i6i_A           85 DIVVSTVGGESIL--DQIALVKAMKAV-GTIKRFLPSEFGHDVNRADPVEPGLNMYREKRRVRQLVEESGIPFTYICC  159 (346)
T ss_dssp             CEEEECCCGGGGG--GHHHHHHHHHHH-CCCSEEECSCCSSCTTTCCCCTTHHHHHHHHHHHHHHHHHTTCCBEEEEC
T ss_pred             CEEEECCchhhHH--HHHHHHHHHHHc-CCceEEeecccCCCCCccCcCCCcchHHHHHHHHHHHHHHcCCCEEEEEe
Confidence            9999876654432  223444444332 10124554444332111111     2234567778888888877666553

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=81.65  E-value=18  Score=28.75  Aligned_cols=58  Identities=24%  Similarity=0.138  Sum_probs=40.1

Q ss_pred             CCeEEEEcCCcch---hHHHhhCCCCeEEEE-eCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          109 KGRALVPGCGTGY---DVVAMASPERYVVGL-EISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       109 ~~~vLDiG~G~G~---~~~~l~~~~~~v~~i-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++|=.|++.|.   .+..|++.|++|+.+ +.+++..+...+.+...+  .++.++.+|+.+
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   65 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQ   65 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCC
Confidence            4577777766552   234555589999886 788877777766665543  468888888875

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=80.95  E-value=20  Score=28.80  Aligned_cols=60  Identities=17%  Similarity=0.018  Sum_probs=42.1

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-CCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSS-LPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+.+....+...+.. .+  .++.++.+|+.+
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   88 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG--RRCLPLSMDVRA   88 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEcCCCC
Confidence            456788988887663   3455666899999999998776665554422 12  458888888865

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=80.95  E-value=8.3  Score=31.47  Aligned_cols=77  Identities=9%  Similarity=0.016  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCCcchh---HHHhhCCCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024008          108 PKGRALVPGCGTGYD---VVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~---~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------  171 (274)
                      .++++|=.|++.|.-   +..|++.|+   +|+.++.+.+.++.+.+.+.......++.++.+|+.+...          
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            357889888766532   234444565   9999999998887776665442112468899999986221          


Q ss_pred             -CCCeeEEEecccc
Q 024008          172 -TELFDLIFDYTFF  184 (274)
Q Consensus       172 -~~~fD~v~~~~~~  184 (274)
                       .++.|+++.+...
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             1479999987553

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=80.70  E-value=17  Score=29.33  Aligned_cols=72  Identities=11%  Similarity=0.024  Sum_probs=49.6

Q ss_pred             CeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCCe
Q 024008          110 GRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF  175 (274)
Q Consensus       110 ~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~~f  175 (274)
                      +++|=.|++.|.   .+..|++.|++|++++.+++.++...+.+...   .++.++.+|+.+..           ..++.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            578878876552   23455568999999999988777666555332   35888999998621           11468


Q ss_pred             eEEEecccc
Q 024008          176 DLIFDYTFF  184 (274)
Q Consensus       176 D~v~~~~~~  184 (274)
                      |+++.+..+
T Consensus        99 D~lvnnAG~  107 (272)
T 2nwq_A           99 RGLINNAGL  107 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	6e-26
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	2e-17
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	1e-10
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	2e-09
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	7e-07
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	6e-06
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	7e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	1e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	7e-05
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-04
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	2e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	5e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	0.001
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	0.004

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 6e-26
 Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 21/182 (11%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVG 135
           W+  W  G T +   Q   ++  HL        G R   P CG   ++   A     VVG
Sbjct: 13  WQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVG 72

Query: 136 LEISDIAIKKAEELSSSLP----------------NAKFVSFLKADFFTWCPTELFD--L 177
           +EIS++ I++     +                   ++  +S      F    T +    +
Sbjct: 73  VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDM 132

Query: 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PISDHVGGPPYKVSVSDYEEVL 236
           I+D     AI P  R  +A  +   L    + +  +         GPP+ V  ++ E + 
Sbjct: 133 IWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLF 192

Query: 237 QP 238
             
Sbjct: 193 GK 194

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 76.7 bits (187), Expect = 2e-17
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 15/176 (8%)

Query: 100 HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159
           +      +P  R LVP CG   D+  ++    +VVG E+S+ A+++        P+    
Sbjct: 12  YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQ 71

Query: 160 SFLKADFFTWC-------------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD 206
              K                            +D     A+  +MR  + Q ++  +   
Sbjct: 72  GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131

Query: 207 GE-LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK 261
              L+  +      + GPP+ V  +    V+    ++   +          +G + 
Sbjct: 132 CSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQDTLHSSARGLKA 186

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 10/158 (6%)

Query: 95  APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS 152
           A II  L         + L  G   G     +A    +  V  +E +   +++  +  + 
Sbjct: 61  AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE 120

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWA--QKIKDFLKPDGELI 210
             N   +           P E  +++           +   A    +  K FLK  G  +
Sbjct: 121 RENIIPI-----LGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175

Query: 211 TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
             +   S  V   P K    + +E+L+  GF+ +  VD
Sbjct: 176 IAIKARSIDVTKDP-KEIFKEQKEILEAGGFKIVDEVD 212

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS 160
           L  +  +  GR L  GCG G + + +A+    V   + +  ++   E + ++       +
Sbjct: 23  LAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQT 82

Query: 161 FLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF---PIS 217
            L          E +D I        +E +        ++   KP G  + +     P  
Sbjct: 83  DLVDLNTLTFDGE-YDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF 141

Query: 218 DHVGGPPYKVSVSDYEEVLQ 237
               G P+     +     +
Sbjct: 142 PCTVGFPFAFKEGELRRYYE 161

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 14/172 (8%)

Query: 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
           P  R L  G G+G  +   A        G+++S +   +A+  +  L  ++ V F+  D 
Sbjct: 33  PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 92

Query: 167 FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI-----------TLMFP 215
             +   E  D+               A   + +   LKP G ++           T    
Sbjct: 93  AGYVANEKCDVAA--CVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIA 150

Query: 216 ISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267
            +  V      +++         +G+  + +V        R    K    +R
Sbjct: 151 QACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLTMRR 202

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 26/165 (15%)

Query: 86  LTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIA 142
           ++  D      II+     G  P    L  G G+G     +      +  +  +E  +  
Sbjct: 69  ISEIDASY---IIMRC---GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDN 122

Query: 143 IKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDF 202
           +KKA +  S   +   V   ++D   +    + D ++D       +P       QKI   
Sbjct: 123 LKKAMDNLSEFYDIGNVRTSRSDIADF----ISDQMYDAVIADIPDPWN---HVQKIASM 175

Query: 203 LKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247
           +KP       +          P           L   G   +  V
Sbjct: 176 MKPGSVATFYL----------PNFDQSEKTVLSLSASGMHHLETV 210

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 27/164 (16%), Positives = 47/164 (28%), Gaps = 38/164 (23%)

Query: 78  WEKCWEEGLTPWDIG--------------------QPAPIIVHLHQSGA----------- 106
           W + W   L P                        +P       H               
Sbjct: 59  WLEAWRRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHL 118

Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
            P  + L  G G+G   +A        +G++I  + + +AE   ++  N     FL+   
Sbjct: 119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA--NAKRNGVRPRFLEGSL 176

Query: 167 FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
               P               +  E+ AA A + ++ L P G  +
Sbjct: 177 EAALPF-----GPFDLLVANLYAELHAALAPRYREALVPGGRAL 215

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 5/139 (3%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
            + R L  G G G+  +A +   +  +G++ +   ++ A   +                 
Sbjct: 16  AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 75

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV 227
              P + FD+I                  +++   LK DG  + +     +    P    
Sbjct: 76  LPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPED---PVLDE 130

Query: 228 SVSDYEEVLQPMGFQAISI 246
            V+    +  P   +  S+
Sbjct: 131 FVNHLNRLRDPSHVRESSL 149

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 16/113 (14%), Positives = 33/113 (29%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK 157
           I+       L     L   CGTG     +    +    +++S   + +AE    S     
Sbjct: 27  IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKP 86

Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            ++                     +    I+ +    + + + + LK  G  I
Sbjct: 87  RLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 4/124 (3%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159
           L +         L  GCG G D++    +      G++I++++I  A   + ++     V
Sbjct: 17  LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKV 76

Query: 160 SFLKADFFTWCP---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216
            F   D +        E   +   ++F  A         AQ+        G    +  P 
Sbjct: 77  FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136

Query: 217 SDHV 220
            D +
Sbjct: 137 RDVI 140

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 17/136 (12%)

Query: 91  IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAE 147
           I  P  I + L      P    L  G G+G   + ++     +  V+  E+       A+
Sbjct: 81  ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK 140

Query: 148 E----------LSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQ 197
           +          LS        V F+  D       ++  L FD      + P        
Sbjct: 141 KNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-TEDIKSLTFDAVALDMLNPH---VTLP 196

Query: 198 KIKDFLKPDGELITLM 213
                LK  G     +
Sbjct: 197 VFYPHLKHGGVCAVYV 212

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
               A+  GCGTG   + +A   R V  ++ +  AI   E           V+ ++ D  
Sbjct: 33  KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92

Query: 168 -TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
              C     D+         ++  +R    +     LKP G +I
Sbjct: 93  EALCKIPDIDIAVVGGSGGELQEILRIIKDK-----LKPGGRII 131

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSL--------PNAK 157
                +  G G G  V+ +A  +  ++  G+E +DI  K AE +                
Sbjct: 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210

Query: 158 FVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
             +  + DF +      + +    +    A  PE+     ++    +K  G +++ 
Sbjct: 211 EYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQ-LKERFANMKEGGRIVSS 265

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 11/126 (8%)

Query: 91  IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAE 147
           +  P      +H+    P  R L  G G+G   +++     P   V+  E      + A 
Sbjct: 79  VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR 138

Query: 148 ELSSSLPNAKF--VSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP 205
              S            + +D      +EL D   D      + P         +   L  
Sbjct: 139 RNVSGCYGQPPDNWRLVVSDL---ADSELPDGSVDRAVLDMLAPW---EVLDAVSRLLVA 192

Query: 206 DGELIT 211
            G L+ 
Sbjct: 193 GGVLMV 198

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 16/138 (11%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEI----SDIAIKKAEELSSSLPNAKFV- 159
                 R L   CGTG D + +      V  ++        A+K+           K+V 
Sbjct: 53  RQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVI 112

Query: 160 ---SFLKADFFTWCPTELFDLIFDYTFFCAI-----EPEMRAAWAQKIKDFLKPDGELIT 211
              ++L  D           +I     F  +     +        + I   ++P G L+ 
Sbjct: 113 EEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172

Query: 212 LMF---PISDHVGGPPYK 226
                  I      PP K
Sbjct: 173 DHRNYDYILSTGCAPPGK 190

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 24/143 (16%), Positives = 38/143 (26%), Gaps = 23/143 (16%)

Query: 108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSL---------PNA 156
                +  G G G  VV  A         G EI D A          L            
Sbjct: 216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275

Query: 157 KFVSFLKADFFTWCPTEL----FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
                LK  F             D+I    F    + ++      KI    K   ++I+ 
Sbjct: 276 NVEFSLKKSFVDNNRVAELIPQCDVILVNNF--LFDEDLNKKVE-KILQTAKVGCKIIS- 331

Query: 213 MFPISDHVGGPPYKVSVSDYEEV 235
                  +    Y+++  + E +
Sbjct: 332 ----LKSLRSLTYQINFYNVENI 350

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
              R L  G  +G  V  +A    E  +  +E S    +K  EL     N   +     D
Sbjct: 56  GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPL---LFD 112

Query: 166 FFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY 225
                         D  +    +           + FLK  GE++ ++   S      P 
Sbjct: 113 ASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE 172

Query: 226 KVSVSDYEEVLQPMGFQAISIVD 248
           +  V           F+ +    
Sbjct: 173 E--VFKSVLKEMEGDFKIVKHGS 193

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 17/188 (9%)

Query: 98  IVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA 156
           +  L Q  AL      L    G G+   A A   + VV  ++++  +K A        + 
Sbjct: 4   LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ 63

Query: 157 KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216
           +               E F ++                   +    LK  G+L+ +    
Sbjct: 64  QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVS--EAYRVLKKGGQLLLVDNSA 121

Query: 217 SDHVGGPPYK--------------VSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKL 262
            ++     +                  SD+ ++L+  GF+   +             +++
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRM 181

Query: 263 GRWKRSVR 270
                  +
Sbjct: 182 NVTTEKKQ 189

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 27/135 (20%), Positives = 41/135 (30%), Gaps = 4/135 (2%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS 160
             +       R L   CGTG   + +A     VVG  +             +      + 
Sbjct: 34  FKEDAKREVRRVLDLACGTGIPTLELAERGYEVVG--LDLHEEMLRVARRKAKERNLKIE 91

Query: 161 FLKADFFTWCPTELFD-LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219
           FL+ D         FD +   ++     + E       K+ + LKP G  I   FP   +
Sbjct: 92  FLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI-TDFPCWFY 150

Query: 220 VGGPPYKVSVSDYEE 234
            G     V      E
Sbjct: 151 GGRDGPVVWNEQKGE 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.93
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.9
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.89
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.89
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.89
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.88
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.88
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.87
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.86
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.86
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.86
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.85
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.85
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.84
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.84
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.84
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.84
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.83
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.83
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.82
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.81
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.8
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.8
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.79
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.79
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.78
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.75
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.74
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.73
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.72
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.7
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.7
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.69
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.67
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.66
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.65
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.64
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.64
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.62
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.6
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.59
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.58
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.57
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.56
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.56
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.55
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.54
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.53
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.52
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.52
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.51
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.5
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.49
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.49
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.47
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.45
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.42
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.42
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.41
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.4
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.38
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.36
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.35
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.35
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.33
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.32
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.31
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.28
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.27
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.27
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.26
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.25
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.21
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.03
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.97
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.95
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.94
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.94
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.83
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.83
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.81
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.8
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.75
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.74
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.74
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.7
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.68
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.68
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.63
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.54
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.5
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.46
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.31
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.31
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.3
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.28
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.28
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.13
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.1
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	98.07
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.06
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.57
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	97.36
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.32
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.3
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.24
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.23
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.23
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.88
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.84
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.76
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.76
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.71
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.64
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.59
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.56
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.52
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.46
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.33
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.75
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.72
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.7
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.64
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.6
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.47
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.42
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.33
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.16
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	95.1
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.97
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.86
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.75
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.59
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.57
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.45
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.38
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.36
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.28
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.12
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.02
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.01
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.01
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.97
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.95
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.89
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.87
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.78
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.77
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.71
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.57
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.53
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.44
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.35
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.26
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.26
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.25
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.94
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.8
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.72
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.77
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.73
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.63
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.53
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.36
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.33
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	91.0
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.89
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	90.75
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.73
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	90.6
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.25
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.87
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.65
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	89.55
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.34
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.25
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	88.92
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.83
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	88.81
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.74
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	88.74
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	88.36
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.95
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	87.75
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	87.27
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.98
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	86.4
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.53
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.18
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	85.14
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.75
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	84.58
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	83.45
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	82.95
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	82.8
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	82.24
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.71
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.5
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	81.43

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.2e-25  Score=179.41  Aligned_cols=174  Identities=20%  Similarity=0.298  Sum_probs=146.6

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024008           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~  152 (274)
                      ..+|+++|.++..+|+...+.+.+.+++...  ..++.+|||+|||+|..+..|++.|++|+|||+|+.+++.|+++...
T Consensus        10 ~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~   89 (229)
T d2bzga1          10 LEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNL   89 (229)
T ss_dssp             HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhc
Confidence            4789999999999999999999988777543  34568999999999999999999999999999999999999988654


Q ss_pred             CC----------------CCcceEEEEcccCC--CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          153 LP----------------NAKFVSFLKADFFT--WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       153 ~~----------------~~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .+                ...++++.++|++.  ....+.||+|+...++++++++.+..++.++.++|+|||.+++..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1          90 SYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             CEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence            21                12478999999987  3456789999999999999999999999999999999999877766


Q ss_pred             cCC-CCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          215 PIS-DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       215 ~~~-~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ... ....++|+.++.+++.+++.. +|.+..++..
T Consensus       170 ~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~le~~  204 (229)
T d2bzga1         170 SYDPTKHPGPPFYVPHAEIERLFGK-ICNIRCLEKV  204 (229)
T ss_dssp             ECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred             ccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEEEEEe
Confidence            543 335577888999999999976 7877666543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.90  E-value=2.4e-23  Score=168.86  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=120.4

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCee
Q 024008           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD  176 (274)
                      .++++... .++.+|||||||+|..+..+++.+.+|+|+|+|+.+++.|+++....+. ++++|+++|+.+ +.++++||
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc-ccccccccccccccccccccc
Confidence            34444444 4458999999999999999999999999999999999999999877665 579999999998 45678999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCcccCHHHHHHHHhcCCCc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~Gf~  242 (274)
                      +|++..+++|+++  ...++.++.++|+|||++++.++.....              .......++..++.++++++||+
T Consensus        84 ~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  161 (231)
T d1vl5a_          84 IVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFE  161 (231)
T ss_dssp             EEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCE
T ss_pred             cccccccccccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCE
Confidence            9999999999953  4678999999999999999977654322              11112345789999999999999


Q ss_pred             EEEEeecc
Q 024008          243 AISIVDNK  250 (274)
Q Consensus       243 ~~~~~~~~  250 (274)
                      ++++....
T Consensus       162 ~~~~~~~~  169 (231)
T d1vl5a_         162 LEELHCFH  169 (231)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            98876643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.89  E-value=2.6e-22  Score=159.13  Aligned_cols=141  Identities=15%  Similarity=0.227  Sum_probs=117.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      ..++++|||+|||+|..+..+++.|++|+|+|+|+.+++.++++....++ +++.+...|+....++++||+|++..+++
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVVMM  106 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeeeee
Confidence            34567999999999999999999999999999999999999999887766 36999999999877789999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---VGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      +++++....+++++.++|+|||++++..+.....   ..+.++.++..++.+++  +||+++...+.
T Consensus       107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~--~~~~i~~~~e~  171 (198)
T d2i6ga1         107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYY--EGWDMLKYNED  171 (198)
T ss_dssp             GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCTTHHHHHT--TTSEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCHHHHHHHh--CCCeEEEeeec
Confidence            9988888999999999999999999877654322   12334556788888888  48988765543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.89  E-value=8.4e-23  Score=161.48  Aligned_cols=160  Identities=19%  Similarity=0.314  Sum_probs=127.8

Q ss_pred             CCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-----------Ccce
Q 024008           92 GQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-----------AKFV  159 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-----------~~~v  159 (274)
                      .+.++.+.+++..+. .++.+|||+|||+|..+..|++.|++|+|+|+|+.+++.|+++....+.           ...+
T Consensus         3 ~~~~~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (201)
T d1pjza_           3 SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI   82 (201)
T ss_dssp             SSSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred             hhHHHHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence            344566777776664 4567999999999999999999999999999999999999999865432           1346


Q ss_pred             EEEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-CCCCCCCcccCHHHHHHHH
Q 024008          160 SFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-DHVGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       160 ~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~  236 (274)
                      +|..+|+....+  ...||+|++..++++++++....+++++.++|||||.+++..+... ....++++..+.+++.+++
T Consensus        83 ~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~  162 (201)
T d1pjza_          83 EIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVM  162 (201)
T ss_dssp             EEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTS
T ss_pred             ceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHh
Confidence            888899887443  4689999999999999988889999999999999999877665543 3345667788999999988


Q ss_pred             hcCCCcEEEEeecccc
Q 024008          237 QPMGFQAISIVDNKLA  252 (274)
Q Consensus       237 ~~~Gf~~~~~~~~~~~  252 (274)
                      .. +|++..+......
T Consensus       163 ~~-~~~i~~~~~~~~~  177 (201)
T d1pjza_         163 SG-NWEVTKVGGQDTL  177 (201)
T ss_dssp             CS-SEEEEEEEESSCT
T ss_pred             CC-CcEEEEEEEeccc
Confidence            64 7887666655433

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=2.2e-22  Score=163.62  Aligned_cols=145  Identities=16%  Similarity=0.184  Sum_probs=119.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.|+++....+. +++.++++|+.+ +.++++||+|++..++
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccccccccceeeeecee
Confidence            45678999999999999999999889999999999999999999887665 469999999988 4567899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +++++  ...+++++.++|+|||++++.++.....              ........+..++..+++.+||.+..+....
T Consensus        93 ~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~  170 (234)
T d1xxla_          93 HHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN  170 (234)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeEEEEee
Confidence            99853  5689999999999999999877654321              1111223578899999999999988887755


Q ss_pred             ccc
Q 024008          251 LAI  253 (274)
Q Consensus       251 ~~~  253 (274)
                      .+.
T Consensus       171 ~~~  173 (234)
T d1xxla_         171 LPI  173 (234)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            433

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.2e-22  Score=160.15  Aligned_cols=141  Identities=13%  Similarity=0.137  Sum_probs=117.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..++.. +.+|+|+|+|+.+++.|+++....+. .+++|.++|+.+. .+.++||+|++..+++
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccccccc
Confidence            3479999999999999988765 45899999999999999999876643 4689999999884 4568999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      |++++....++.++.++|+|||.+++.+......    .....+..+.+++.++++++||+++.....
T Consensus       139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q  206 (222)
T d2ex4a1         139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ  206 (222)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence            9988777889999999999999999987544332    112223358999999999999999887763

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=4.2e-22  Score=163.10  Aligned_cols=152  Identities=16%  Similarity=0.130  Sum_probs=123.0

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024008           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  173 (274)
                      ..+..+..... .++.+|||||||+|..+..+++ .+.+|+|+|+|+.+++.|+++....++.++++|+.+|+.+..+++
T Consensus        20 ~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~   99 (245)
T d1nkva_          20 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE   99 (245)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence            33444554443 4568999999999999999887 578999999999999999999999988889999999999977789


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------CCCCcccCHHHHHHHHhcCCCc
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------GGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~Gf~  242 (274)
                      +||+|++..+++|++  +...++++++++|||||++++.........           .......+..++...++++||.
T Consensus       100 ~fD~v~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~  177 (245)
T d1nkva_         100 KCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYD  177 (245)
T ss_dssp             CEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBC
T ss_pred             ceeEEEEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCE
Confidence            999999999999995  346789999999999999998764322110           0111235788999999999999


Q ss_pred             EEEEeec
Q 024008          243 AISIVDN  249 (274)
Q Consensus       243 ~~~~~~~  249 (274)
                      ++.....
T Consensus       178 ~v~~~~~  184 (245)
T d1nkva_         178 VVEMVLA  184 (245)
T ss_dssp             CCEEEEC
T ss_pred             EEEEEeC
Confidence            8876554

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.87  E-value=1.1e-21  Score=163.93  Aligned_cols=142  Identities=17%  Similarity=0.173  Sum_probs=119.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||||||+|..+..+++ .+++|+|+|+++.+++.|+++....++.++++|+.+|+.+ +.++++||+|++..++
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  145 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  145 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchh
Confidence            3568999999999999999987 5889999999999999999999888888899999999998 4567899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-----------CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-----------PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +|++  +...++.++.++|+|||++++.++...+....           .+...+..++.++++++||..+.+.+..
T Consensus       146 ~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~  220 (282)
T d2o57a1         146 LHSP--DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP  220 (282)
T ss_dssp             GGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred             hhcc--CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEECc
Confidence            9996  34678999999999999999877654332111           1223478999999999999988887654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.86  E-value=5.5e-21  Score=157.09  Aligned_cols=146  Identities=15%  Similarity=0.089  Sum_probs=121.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      +..+|||||||+|..+..+++  ++.+++++|+ +++++.++++....++.++++++.+|+++..+ .+||+|++..+++
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~-~~~D~v~~~~vlh  157 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKADAIILSFVLL  157 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCEEEEEEESCGG
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc-cchhheeeccccc
Confidence            347999999999999999988  6789999998 67899999999998888899999999987544 5799999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC---------------CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP---------------PYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      +++++....++++++++|+|||++++.+..........               ....+.+++.++++++||+++++....
T Consensus       158 ~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~  237 (253)
T d1tw3a2         158 NWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLP  237 (253)
T ss_dssp             GSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECC
Confidence            99988888999999999999999999886543221111               012378999999999999999998866


Q ss_pred             cccCC
Q 024008          251 LAIGP  255 (274)
Q Consensus       251 ~~~~~  255 (274)
                      .+..+
T Consensus       238 ~p~~~  242 (253)
T d1tw3a2         238 SPTIP  242 (253)
T ss_dssp             CSSSS
T ss_pred             CCCCC
Confidence            55544

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.86  E-value=3e-21  Score=158.61  Aligned_cols=147  Identities=16%  Similarity=0.087  Sum_probs=117.8

Q ss_pred             HHHHhcCCC-CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCe
Q 024008           99 VHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELF  175 (274)
Q Consensus        99 ~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~f  175 (274)
                      ..++..... ++.+|||+|||+|..+..++.+ ..+|+++|+++.+++.|+++....   ++++|.++|+.++ .++++|
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCcc
Confidence            445555533 4479999999999999988875 448999999999999999987654   4689999999885 446789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      |+|++..+++|+++++...++.++.++|+|||.+++.+......     ........+.+++.++++++||++++...
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence            99999999999998888899999999999999999876433211     11122345889999999999999988665

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.86  E-value=2.8e-21  Score=156.16  Aligned_cols=151  Identities=17%  Similarity=0.183  Sum_probs=120.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  173 (274)
                      +..++.....++.+|||+|||+|..+..+++    ++++|+|+|+|+.+++.|+++....+...++.+..+|+.+. +.+
T Consensus        29 i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-~~~  107 (225)
T d1im8a_          29 IGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-EIK  107 (225)
T ss_dssp             HHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-CCC
T ss_pred             HHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-ccc
Confidence            4444444456778999999999999988875    67899999999999999999988776667788888888764 346


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------------CC---------------
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------------GG---------------  222 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~----------------~~---------------  222 (274)
                      .+|+|++..++++++.++...++++++++|+|||.+++.+.......                .+               
T Consensus       108 ~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (225)
T d1im8a_         108 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALEN  187 (225)
T ss_dssp             SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHH
T ss_pred             cceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhc
Confidence            79999999999999888888999999999999999999765432210                00               


Q ss_pred             CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          223 PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      .....+.+++.++++++||+.+++...
T Consensus       188 ~~~~~s~~~~~~~L~~aGF~~v~~~~~  214 (225)
T d1im8a_         188 VMRTDSIETHKVRLKNVGFSQVELWFQ  214 (225)
T ss_dssp             HCCCCCHHHHHHHHHHHTCSEEEEEEE
T ss_pred             ccCCCCHHHHHHHHHHcCCCceEEeee
Confidence            022357889999999999998887643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.85  E-value=1.5e-21  Score=159.74  Aligned_cols=150  Identities=18%  Similarity=0.126  Sum_probs=119.0

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  177 (274)
                      +...+.....++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.|+++....+.  +++++++|+......++||+
T Consensus        27 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~  104 (246)
T d1y8ca_          27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDL  104 (246)
T ss_dssp             HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEE
T ss_pred             HHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc--cceeeccchhhhcccccccc
Confidence            4455555556678999999999999999999999999999999999999999877653  69999999998766789999


Q ss_pred             EEec-cccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCC------CC------------------------------
Q 024008          178 IFDY-TFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPIS------DH------------------------------  219 (274)
Q Consensus       178 v~~~-~~~~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~------~~------------------------------  219 (274)
                      |+|. .+++++ +.+++..++++++++|+|||.+++...+..      ..                              
T Consensus       105 i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (246)
T d1y8ca_         105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFF  184 (246)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred             cceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEeeccCCcceeEEEEEE
Confidence            9986 577776 457888999999999999999887443210      00                              


Q ss_pred             --CCC---------CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          220 --VGG---------PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       220 --~~~---------~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                        ..+         ....++.+++.++++++||+.+.+...
T Consensus       185 ~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~  225 (246)
T d1y8ca_         185 VRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC  225 (246)
T ss_dssp             EECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred             EecCCceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEec
Confidence              000         011247899999999999998877653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=1.4e-20  Score=154.17  Aligned_cols=115  Identities=22%  Similarity=0.314  Sum_probs=98.8

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      .+..++... ..++.+|||+|||+|..+..+++.+++|+|+|+|+.+++.|+++....+.  ++++.++|+.+...+++|
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc--cchheehhhhhccccccc
Confidence            455555544 34457999999999999999999999999999999999999999887653  699999999987667899


Q ss_pred             eEEEec-ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          176 DLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~-~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      |+|++. .++++++.++...++++++++|+|||++++..
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            999986 67888887788899999999999999998743

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=9.2e-21  Score=152.64  Aligned_cols=116  Identities=24%  Similarity=0.286  Sum_probs=99.9

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCee
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD  176 (274)
                      +..++.....+..+|||||||+|..+..+++.+.+|+|+|+|+.+++.|+++....+  .++.++.+|+.+ ..+.++||
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~~~~~~fD  104 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFD  104 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEE
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc--ccccccccccccccccCcCce
Confidence            444554433466899999999999999999999999999999999999999987765  457889999988 55678999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      +|++..+++|+++.+...+++++.++|+|||++++....
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999999999998778889999999999999999887643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=2.2e-20  Score=155.66  Aligned_cols=163  Identities=15%  Similarity=0.123  Sum_probs=129.0

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      +..+++.+. .++.+|||||||+|..+..+++ .|++|+|+++|+++++.+++++...++.+++.+...|..  .++++|
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~--~~~~~f  127 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE--EFDEPV  127 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG--GCCCCC
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc--cccccc
Confidence            444555554 4568999999999999998886 688999999999999999999999988889999998874  446889


Q ss_pred             eEEEecccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------C-----------------CCC
Q 024008          176 DLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHV-------G-----------------GPP  224 (274)
Q Consensus       176 D~v~~~~~~~~~~~-------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-------~-----------------~~~  224 (274)
                      |.|++..+++|+.+       +....+++++.++|+|||++++..+...+..       .                 ...
T Consensus       128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg  207 (291)
T d1kpia_         128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG  207 (291)
T ss_dssp             SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred             ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence            99999999999864       4578999999999999999998766543210       0                 001


Q ss_pred             cccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHHhhh
Q 024008          225 YKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      ...+..++..+++.+||++..+......+     .+++..|++
T Consensus       208 ~lps~~~~~~~~e~~gl~v~~~~~~~~hY-----a~TL~~W~~  245 (291)
T d1kpia_         208 RLPRISQVDYYSSNAGWKVERYHRIGANY-----VPTLNAWAD  245 (291)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEEECGGGH-----HHHHHHHHH
T ss_pred             CCCCHHHHHhhhcccccccceeeeccccH-----HHHHHHHHH
Confidence            22478999999999999999887765444     356666654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.84  E-value=1.8e-20  Score=151.28  Aligned_cols=135  Identities=17%  Similarity=0.151  Sum_probs=111.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      .++++|||||||+|..+..+++.+.+|+|+|+|+++++.|+++..     .+++++.+|+....++++||+|++..+++|
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~fD~I~~~~vleh   93 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLPRRYDNIVLTHVLEH   93 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc-----cccccccccccccccccccccccccceeEe
Confidence            456799999999999999999999999999999999999998863     359999999988777789999999999999


Q ss_pred             cChhHHHHHHHHHH-hcccCCcEEEEEEccCCCC----------------------CCCCCcccCHHHHHHHHhcCCCcE
Q 024008          187 IEPEMRAAWAQKIK-DFLKPDGELITLMFPISDH----------------------VGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       187 ~~~~~~~~~l~~l~-~~L~~gG~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      +++  ...++.++. ++|+|||.+++...+....                      ..+....++.+++.++++++||++
T Consensus        94 ~~d--~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i  171 (225)
T d2p7ia1          94 IDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV  171 (225)
T ss_dssp             CSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             cCC--HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEE
Confidence            964  357788987 7999999999976432210                      011123468999999999999999


Q ss_pred             EEEee
Q 024008          244 ISIVD  248 (274)
Q Consensus       244 ~~~~~  248 (274)
                      +....
T Consensus       172 ~~~~~  176 (225)
T d2p7ia1         172 TYRSG  176 (225)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88664

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=2.4e-20  Score=154.91  Aligned_cols=151  Identities=17%  Similarity=0.132  Sum_probs=122.8

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  174 (274)
                      .+..+++.+. .++.+|||||||+|..+..+++ .|.+|+|+|+|+++++.|++++...++..++.+...|...+  +++
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~~~  117 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEP  117 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--CCC
T ss_pred             HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--ccc
Confidence            3555666554 4568999999999999999887 58899999999999999999999998888888888887644  478


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------------CCCCCcccCH
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------------VGGPPYKVSV  229 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------------------~~~~~~~~~~  229 (274)
                      ||.|++..+++|+.......+++++.++|||||++++........                         -.+ ....+.
T Consensus       118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPg-g~lPS~  196 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPG-GRLPST  196 (280)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTT-CCCCCH
T ss_pred             hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCC-Ccccch
Confidence            999999999999988888899999999999999999865332211                         001 122478


Q ss_pred             HHHHHHHhcCCCcEEEEeecc
Q 024008          230 SDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       230 ~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                      .++.++++.+||+++.+....
T Consensus       197 ~~l~~~~e~aGf~v~~~~~~~  217 (280)
T d2fk8a1         197 EMMVEHGEKAGFTVPEPLSLR  217 (280)
T ss_dssp             HHHHHHHHHTTCBCCCCEECH
T ss_pred             HhhhhhHHhhccccceeeecc
Confidence            999999999999998887643

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=6.7e-20  Score=152.25  Aligned_cols=163  Identities=19%  Similarity=0.175  Sum_probs=128.5

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      +..+++.+. .++.+|||||||+|..+..+++ .|++|+|+++|+++++.|+++....++.+++++..+|+...  +++|
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~f  128 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DEPV  128 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--CCCC
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--cccc
Confidence            344445443 4568999999999999998887 78999999999999999999999999989999999998654  3689


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CC--------------------CCCcccCHHH
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VG--------------------GPPYKVSVSD  231 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----~~--------------------~~~~~~~~~~  231 (274)
                      |.|++..+++|+.......+++++.++|+|||++++........    ..                    ......+..+
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~  208 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM  208 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhh
Confidence            99999999999976667889999999999999999866542210    00                    0011237889


Q ss_pred             HHHHHhcCCCcEEEEeecccccCCccchhHHHHhhh
Q 024008          232 YEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       232 ~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      +.++++.+||++.++......+     .+++..|++
T Consensus       209 ~~~~~e~agf~v~~~~~~~~hY-----arTl~~W~~  239 (285)
T d1kpga_         209 VQECASANGFTVTRVQSLQPHY-----AKTLDLWSA  239 (285)
T ss_dssp             HHHHHHTTTCEEEEEEECHHHH-----HHHHHHHHH
T ss_pred             HHHHHHHhchhhcccccchhhH-----HHHHHHHHH
Confidence            9999999999999988765433     255555543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.83  E-value=1.1e-19  Score=149.26  Aligned_cols=149  Identities=17%  Similarity=0.096  Sum_probs=120.3

Q ss_pred             HHhcCCCCC-CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024008          101 LHQSGALPK-GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus       101 ~~~~~~~~~-~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  177 (274)
                      +++....++ .+|||||||+|..+..+++  ++.+++++|+ |++++.+++++...++.+++.++.+|++...+ .+||+
T Consensus        73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p-~~~D~  150 (256)
T d1qzza2          73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTADV  150 (256)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCEEE
T ss_pred             HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc-ccchh
Confidence            333333334 7999999999999999988  6789999997 88999999999988888899999999987554 46999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC----------------CcccCHHHHHHHHhcCCC
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP----------------PYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~Gf  241 (274)
                      |++.+++|+++++....++++++++|+|||++++.++.........                ....+.+++.++++++||
T Consensus       151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf  230 (256)
T d1qzza2         151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL  230 (256)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred             hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCC
Confidence            9999999999988888999999999999999999886422211110                122478999999999999


Q ss_pred             cEEEEeeccc
Q 024008          242 QAISIVDNKL  251 (274)
Q Consensus       242 ~~~~~~~~~~  251 (274)
                      +++++.....
T Consensus       231 ~~~~~~~~~~  240 (256)
T d1qzza2         231 ALASERTSGS  240 (256)
T ss_dssp             EEEEEEEECC
T ss_pred             ceeEEEEeCC
Confidence            9998876443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=8e-20  Score=145.56  Aligned_cols=129  Identities=23%  Similarity=0.279  Sum_probs=105.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~  185 (274)
                      .++.+|||||||+|.++..+.    +++|+|+|+.+++.|+++        +++++++|+.+ +.++++||+|++..+++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc--------ccccccccccccccccccccccccccccc
Confidence            345789999999999988874    468999999999999874        38899999988 45678999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      |+++  ...+++++.++|+|||.+++........             .......++.+++.++++++||+.+++...
T Consensus       103 h~~d--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~  177 (208)
T d1vlma_         103 FVDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT  177 (208)
T ss_dssp             GSSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cccc--cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEEE
Confidence            9963  5689999999999999999987654321             111123468999999999999998887763

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.81  E-value=2.4e-19  Score=147.08  Aligned_cols=147  Identities=18%  Similarity=0.189  Sum_probs=115.2

Q ss_pred             HhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEE
Q 024008          102 HQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLI  178 (274)
Q Consensus       102 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v  178 (274)
                      +.....++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|+++....+...++.|.++|+..  ....++||+|
T Consensus        18 I~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          18 IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             HHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             HHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEE
Confidence            333345678999999999999999988664 8999999999999999998877666789999999976  3356789999


Q ss_pred             Eeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC---------------------CCC-----CC--------
Q 024008          179 FDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS---------------------DHV-----GG--------  222 (274)
Q Consensus       179 ~~~~~~~~~--~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~---------------------~~~-----~~--------  222 (274)
                      ++..+++|+  +.+....++..+.++|+|||++++......                     ...     .+        
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  177 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL  177 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEEcc
Confidence            999999986  345678899999999999999987543210                     000     00        


Q ss_pred             ------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          223 ------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       223 ------~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                            ..+.+..+.+.++++++||++++...
T Consensus       178 ~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~  209 (252)
T d1ri5a_         178 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKG  209 (252)
T ss_dssp             TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred             cccccCcccccCHHHHHHHHHHcCCEEEEEec
Confidence                  01224578999999999999887754

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=5.7e-20  Score=150.11  Aligned_cols=135  Identities=19%  Similarity=0.235  Sum_probs=111.2

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  176 (274)
                      .+.+.+.....++.+|||+|||+|..++.+++.|.+|+|+|+++.+++.|++++..+++  ++++..+|+....+.++||
T Consensus       109 l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~~~~~~~fD  186 (254)
T d2nxca1         109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEAALPFGPFD  186 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHHHGGGCCEE
T ss_pred             HHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccccccccccc
Confidence            34445554567789999999999999999999999999999999999999999998876  4678899987766678999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +|+++...+     ....+++.+.++|||||++++..+-.          ...+++.+.++.+||.+++...
T Consensus       187 ~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil~----------~~~~~v~~~~~~~Gf~~~~~~~  243 (254)
T d2nxca1         187 LLVANLYAE-----LHAALAPRYREALVPGGRALLTGILK----------DRAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             EEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG----------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred             hhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEecch----------hhHHHHHHHHHHCCCEEEEEEE
Confidence            999875443     34677899999999999999865322          2467899999999999887765

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=149.26  Aligned_cols=179  Identities=15%  Similarity=0.088  Sum_probs=122.7

Q ss_pred             ccchhHhhhcCCCCccCCCccHH----HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHH
Q 024008           75 SGGWEKCWEEGLTPWDIGQPAPI----IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEEL  149 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~  149 (274)
                      ..||+.+|......+........    +.+.+.....++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++
T Consensus        14 ~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~   93 (257)
T d2a14a1          14 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKW   93 (257)
T ss_dssp             HHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHH
Confidence            36777777665443322221222    2222222344567999999999999887777655 799999999999999999


Q ss_pred             hhcCCCCcc----------------------------e-EEEEcccCC-----CCCCCCeeEEEecccccccCh--hHHH
Q 024008          150 SSSLPNAKF----------------------------V-SFLKADFFT-----WCPTELFDLIFDYTFFCAIEP--EMRA  193 (274)
Q Consensus       150 ~~~~~~~~~----------------------------v-~~~~~d~~~-----~~~~~~fD~v~~~~~~~~~~~--~~~~  193 (274)
                      +........                            + .....+...     ..+.++||+|++..+++++..  +...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~  173 (257)
T d2a14a1          94 LKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR  173 (257)
T ss_dssp             HHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred             HhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHH
Confidence            876542110                            0 112222211     345678999999999999853  4677


Q ss_pred             HHHHHHHhcccCCcEEEEEEccCCCCC-----CCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          194 AWAQKIKDFLKPDGELITLMFPISDHV-----GGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       194 ~~l~~l~~~L~~gG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      .+++++.++|||||.+++..+......     .-..+.++.+++.++++++||+++++.......
T Consensus       174 ~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~  238 (257)
T d2a14a1         174 AALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSY  238 (257)
T ss_dssp             HHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             HHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEEEecccc
Confidence            899999999999999999876543210     011344689999999999999999886655443

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.79  E-value=8.3e-19  Score=146.04  Aligned_cols=139  Identities=18%  Similarity=0.202  Sum_probs=109.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++   .+.+|+|+|+|+.+++.|+++....+  .+++|..+|+.+....++||+|++..+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~--~~~~f~~~d~~~~~~~~~fD~v~~~~~  103 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIELNDKYDIAICHAF  103 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc--ccccccccccccccccCCceEEEEehh
Confidence            4568999999999999999987   46799999999999999999988775  369999999988655678999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCC---------CC--------------------CCCCCcccCHHHHHH
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS---------DH--------------------VGGPPYKVSVSDYEE  234 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~---------~~--------------------~~~~~~~~~~~~~~~  234 (274)
                      ++|+++  ...+++++.++|||||.+++.+..-.         ..                    ..+.. .....++..
T Consensus       104 l~~~~d--~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~  180 (281)
T d2gh1a1         104 LLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKD-GNIGMKIPI  180 (281)
T ss_dssp             GGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCC-TTGGGTHHH
T ss_pred             hhcCCC--HHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Confidence            999964  35789999999999999998773210         00                    00000 011246778


Q ss_pred             HHhcCCCcEEEEeecc
Q 024008          235 VLQPMGFQAISIVDNK  250 (274)
Q Consensus       235 ~~~~~Gf~~~~~~~~~  250 (274)
                      +++++||+.+++....
T Consensus       181 ~l~eaGf~~i~~~~~~  196 (281)
T d2gh1a1         181 YLSELGVKNIECRVSD  196 (281)
T ss_dssp             HHHHTTCEEEEEEECC
T ss_pred             HHHHcCCeEEEEEEec
Confidence            8999999998876543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-18  Score=141.99  Aligned_cols=189  Identities=12%  Similarity=0.073  Sum_probs=128.0

Q ss_pred             HHHHhhc-ccccchhHhhhcCCCCccCC-Ccc----HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeC
Q 024008           66 LQQLMHI-ESSGGWEKCWEEGLTPWDIG-QPA----PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEI  138 (274)
Q Consensus        66 ~~~~~~~-~~~~~w~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~  138 (274)
                      ++..+.+ ....||+.+|.......... ...    ..+.+.+.....++.+|||+|||+|......+. ...+|+|+|+
T Consensus         6 ~~~~~~~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~   85 (263)
T d2g72a1           6 VASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDF   85 (263)
T ss_dssp             HHHHGGGCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECS
T ss_pred             HHHHHhhcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeC
Confidence            4444454 23468888887644322212 111    233344444456678999999999988755554 4558999999


Q ss_pred             ChHHHHHHHHHhhcCCCCc-----------------------------ceEEEEcccCCC-------CCCCCeeEEEecc
Q 024008          139 SDIAIKKAEELSSSLPNAK-----------------------------FVSFLKADFFTW-------CPTELFDLIFDYT  182 (274)
Q Consensus       139 s~~~~~~a~~~~~~~~~~~-----------------------------~v~~~~~d~~~~-------~~~~~fD~v~~~~  182 (274)
                      |+.+++.+++.+......-                             ......+|+...       ...++||+|++..
T Consensus        86 S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~  165 (263)
T d2g72a1          86 LEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF  165 (263)
T ss_dssp             CHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES
T ss_pred             CHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHH
Confidence            9999999998875443110                             123455666541       2245799999999


Q ss_pred             cccccCh--hHHHHHHHHHHhcccCCcEEEEEEccCCCC--CCC---CCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024008          183 FFCAIEP--EMRAAWAQKIKDFLKPDGELITLMFPISDH--VGG---PPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       183 ~~~~~~~--~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      +++++++  +....+++++.++|||||.+++........  ...   ..+.++.+++.++++++||++++++....+..
T Consensus       166 ~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~  244 (263)
T d2g72a1         166 CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAH  244 (263)
T ss_dssp             CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGG
T ss_pred             HHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEEEeeccCc
Confidence            9999853  467899999999999999999866533221  111   13347999999999999999988776554433

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=2.4e-18  Score=134.62  Aligned_cols=131  Identities=21%  Similarity=0.204  Sum_probs=107.0

Q ss_pred             HHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCee
Q 024008           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (274)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD  176 (274)
                      ..++..+ ..++.+|||+|||+|..++.+++.+.+|+++|+++.+++.|++++...++.++++++++|+.+ ..+...||
T Consensus        23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D  102 (186)
T d1l3ia_          23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID  102 (186)
T ss_dssp             HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred             HHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcC
Confidence            3334333 456689999999999999999998889999999999999999999999988899999999887 45557899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      .|++....+++     ..+++.+.+.|+|||++++.....          -+...+.+.++..||...
T Consensus       103 ~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~~~----------e~~~~~~~~l~~~~~~~~  155 (186)
T d1l3ia_         103 IAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL----------ETKFEAMECLRDLGFDVN  155 (186)
T ss_dssp             EEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH----------HHHHHHHHHHHHTTCCCE
T ss_pred             EEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEeecc----------ccHHHHHHHHHHcCCCeE
Confidence            99988766543     467899999999999998876322          145667788888888543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2.7e-18  Score=139.69  Aligned_cols=110  Identities=21%  Similarity=0.178  Sum_probs=90.2

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCC
Q 024008           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTEL  174 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~  174 (274)
                      ..+..++.....++.+|||+|||+|..+..+++.|++|+|+|+|+.+++.|+++..       ..++.+|+.+ ..++++
T Consensus        30 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~-------~~~~~~~~~~l~~~~~~  102 (246)
T d2avna1          30 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-------KNVVEAKAEDLPFPSGA  102 (246)
T ss_dssp             HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-------SCEEECCTTSCCSCTTC
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc-------ccccccccccccccccc
Confidence            33445555445567899999999999999999999999999999999999998752       2367788887 456789


Q ss_pred             eeEEEec-ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~-~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ||+|++. .+++|+++.  ..+++++.++|+|||.+++...
T Consensus       103 fD~ii~~~~~~~~~~d~--~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         103 FEAVLALGDVLSYVENK--DKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             EEEEEECSSHHHHCSCH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccceeeecchhhhhhhH--HHHHHHHHhhcCcCcEEEEEEC
Confidence            9999986 688988643  5689999999999999998764

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=2.4e-17  Score=129.70  Aligned_cols=112  Identities=21%  Similarity=0.190  Sum_probs=95.0

Q ss_pred             HHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCCCCCCeeEE
Q 024008          101 LHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWCPTELFDLI  178 (274)
Q Consensus       101 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~v  178 (274)
                      +++.+ ..++.+|||+|||+|..+..+++.+.+|+++|+|+.+++.+++++..+++. .++++..+|+.+..++++||+|
T Consensus        44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~I  123 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKI  123 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEE
T ss_pred             HHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEE
Confidence            34333 345689999999999999999998889999999999999999999877764 3689999999887677899999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +++.++++. .+....+++++.+.|+|||.+++..
T Consensus       124 i~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         124 ITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             EECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence            999888754 3455788999999999999988765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=7.4e-18  Score=136.84  Aligned_cols=126  Identities=17%  Similarity=0.162  Sum_probs=103.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..+++   ++.+|+++|.++++++.|++++...+...++++..+|+.+..+++.||.|+.. 
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld-  161 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD-  161 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC-
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec-
Confidence            45678999999999999999887   56799999999999999999998876678899999999987778899999853 


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                          ++  +.+.+++++.++|||||++++.....          -...++.+.++++||..+++.+
T Consensus       162 ----~p--~p~~~l~~~~~~LKpGG~lv~~~P~i----------~Qv~~~~~~l~~~gf~~i~~~E  211 (250)
T d1yb2a1         162 ----IP--DPWNHVQKIASMMKPGSVATFYLPNF----------DQSEKTVLSLSASGMHHLETVE  211 (250)
T ss_dssp             ----CS--CGGGSHHHHHHTEEEEEEEEEEESSH----------HHHHHHHHHSGGGTEEEEEEEE
T ss_pred             ----CC--chHHHHHHHHHhcCCCceEEEEeCCc----------ChHHHHHHHHHHCCCceeEEEE
Confidence                22  22467899999999999998865221          1356777788889998766554

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=2.6e-17  Score=132.39  Aligned_cols=138  Identities=17%  Similarity=0.121  Sum_probs=106.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~  181 (274)
                      ..++.+|||+|||+|..+..+++  ++..|+|+|+|+.+++.+++++...   +++..+.+|...+  ..+..+|++++.
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccccccceeEEee
Confidence            34568999999999999999988  5569999999999999999987665   4688888888773  334567777766


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ..+++.  ++...++.++.+.|||||.+++...........++ ....+++.+.|+++||++++..+.
T Consensus       149 ~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~-~~~~~e~~~~L~~aGF~ive~idL  213 (230)
T d1g8sa_         149 EDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP-KEIFKEQKEILEAGGFKIVDEVDI  213 (230)
T ss_dssp             ECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH-HHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             ccccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH-HHHHHHHHHHHHHcCCEEEEEecC
Confidence            666655  45677899999999999999988765544333322 234577888999999999887653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=8.1e-17  Score=132.27  Aligned_cols=139  Identities=17%  Similarity=0.186  Sum_probs=110.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  175 (274)
                      +...+......+.+|||+|||+|..++.++.  +..+|+++|+|+.+++.|++|+...++ .+++|+.+|+++..+.++|
T Consensus        98 v~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~~~~f  176 (274)
T d2b3ta1          98 VEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQF  176 (274)
T ss_dssp             HHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGTTCCE
T ss_pred             hhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccCCCce
Confidence            3344455455667999999999999998877  678999999999999999999988877 4699999999987777899


Q ss_pred             eEEEecccccccCh-----------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH
Q 024008          176 DLIFDYTFFCAIEP-----------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~~~~-----------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      |+|+++.++..-.+                       .....++....++|+|||.+++.. +..          ..+.+
T Consensus       177 DlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi-g~~----------q~~~v  245 (274)
T d2b3ta1         177 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-GWQ----------QGEAV  245 (274)
T ss_dssp             EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-CSS----------CHHHH
T ss_pred             eEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE-Cch----------HHHHH
Confidence            99999977542110                       234678899999999999998854 111          46789


Q ss_pred             HHHHhcCCCcEEEEee
Q 024008          233 EEVLQPMGFQAISIVD  248 (274)
Q Consensus       233 ~~~~~~~Gf~~~~~~~  248 (274)
                      .++++.+||..+++..
T Consensus       246 ~~~l~~~gf~~i~~~k  261 (274)
T d2b3ta1         246 RQAFILAGYHDVETCR  261 (274)
T ss_dssp             HHHHHHTTCTTCCEEE
T ss_pred             HHHHHHCCCCeEEEEE
Confidence            9999999998655443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.6e-18  Score=136.39  Aligned_cols=156  Identities=18%  Similarity=0.126  Sum_probs=108.3

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCC
Q 024008           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCP  171 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~  171 (274)
                      +.+..+......++++|||||||+|..+..+++. +.++++||+|+.+++.|+++....+  .++.++..|+..   ..+
T Consensus        41 ~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~  118 (229)
T d1zx0a1          41 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP  118 (229)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccc
Confidence            3444454444566789999999999999999885 4689999999999999999987765  467788877654   456


Q ss_pred             CCCeeEEEec-----ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc----cCHHHHHHHHhcCCCc
Q 024008          172 TELFDLIFDY-----TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK----VSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       172 ~~~fD~v~~~-----~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Gf~  242 (274)
                      .++||.|+..     ..++++  .....+++++.++|||||++++.............+.    ...+.+...+.++||+
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~  196 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFR  196 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCC
T ss_pred             cccccceeecccccccccccc--cCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCe
Confidence            7889999843     334444  4567899999999999999877432111100001111    2345666777889998


Q ss_pred             EEEEeecccccCC
Q 024008          243 AISIVDNKLAIGP  255 (274)
Q Consensus       243 ~~~~~~~~~~~~~  255 (274)
                      ...+........+
T Consensus       197 ~~~i~~~~~~~~p  209 (229)
T d1zx0a1         197 RENIRTEVMALVP  209 (229)
T ss_dssp             GGGEEEEEEECCC
T ss_pred             eEEEEEEEeccCC
Confidence            7776654444433

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=6.5e-17  Score=132.72  Aligned_cols=126  Identities=19%  Similarity=0.138  Sum_probs=104.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..+++   ++.+|+++|+++++++.|++++...++.+++.+...|+....+...||.|+.  
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~--  178 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL--  178 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE--
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEe--
Confidence            45678999999999999999987   5679999999999999999999999888899999999877666788999873  


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                         +++  +.+.+++++.++|||||++++.....          ...+++.+.++++||..+++.+
T Consensus       179 ---d~p--~p~~~l~~~~~~LKpGG~lv~~~P~~----------~Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         179 ---DVP--DPWNYIDKCWEALKGGGRFATVCPTT----------NQVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             ---CCS--CGGGTHHHHHHHEEEEEEEEEEESSH----------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred             ---cCC--CHHHHHHHHHhhcCCCCEEEEEeCcc----------cHHHHHHHHHHHCCceeEEEEE
Confidence               333  33578999999999999999876322          2456777888999998777665

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-16  Score=131.67  Aligned_cols=135  Identities=18%  Similarity=0.154  Sum_probs=100.3

Q ss_pred             CeEEEEcCCcchhHHHhhC------C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEE--EEcccC-------CCCCC
Q 024008          110 GRALVPGCGTGYDVVAMAS------P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSF--LKADFF-------TWCPT  172 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~------~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~--~~~d~~-------~~~~~  172 (274)
                      .+|||||||+|..+..+++      +  +..++|+|+|+.+++.|++++.......++.+  ...++.       ...++
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            4899999999998877654      2  33789999999999999999876543334444  333332       23456


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcC
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  239 (274)
                      ++||+|++..+++|+++  ...++++++++|+|||.+++........             .......++.+++.+++++.
T Consensus       122 ~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  199 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL  199 (280)
T ss_dssp             CCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHH
T ss_pred             CceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHC
Confidence            89999999999999953  4689999999999999998887654321             11112235788999999999


Q ss_pred             CCcEEEE
Q 024008          240 GFQAISI  246 (274)
Q Consensus       240 Gf~~~~~  246 (274)
                      ||.....
T Consensus       200 G~~~~~~  206 (280)
T d1jqea_         200 GLKYECY  206 (280)
T ss_dssp             TCCEEEE
T ss_pred             CCceEEE
Confidence            9976543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.3e-16  Score=130.18  Aligned_cols=100  Identities=28%  Similarity=0.319  Sum_probs=85.0

Q ss_pred             hcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEE
Q 024008          103 QSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIF  179 (274)
Q Consensus       103 ~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~  179 (274)
                      .....++.+|||+|||+|..+..+++  ++.+++|+|+|+.+++.|+++.      ++++|+++|+.+ +.+++.||+|+
T Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~  152 (268)
T d1p91a_          79 ERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAII  152 (268)
T ss_dssp             HHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             HhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEe
Confidence            33456678999999999999999987  4679999999999999999875      468999999988 55778999999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~  217 (274)
                      +..+++++         +++.++|||||.+++...+..
T Consensus       153 ~~~~~~~~---------~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         153 RIYAPCKA---------EELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             EESCCCCH---------HHHHHHEEEEEEEEEEEECTT
T ss_pred             ecCCHHHH---------HHHHHHhCCCcEEEEEeeCCc
Confidence            98877653         578999999999999886553

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.65  E-value=2.4e-15  Score=121.84  Aligned_cols=129  Identities=16%  Similarity=0.259  Sum_probs=105.2

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      .+|||||||+|..+..+++  ++.+++.+|+ |..++       .....++++++.+|+++..|  ..|+|+...++|++
T Consensus        83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~~~p--~~D~~~l~~vLh~~  152 (244)
T d1fp1d2          83 STLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFASVP--QGDAMILKAVCHNW  152 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTTCCC--CEEEEEEESSGGGS
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcccccc--cceEEEEehhhhhC
Confidence            7999999999999999987  7889999998 54442       33334789999999987665  45999999999999


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC------------------cccCHHHHHHHHhcCCCcEEEEee
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP------------------YKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +++....+++++++.|+|||++++.++-..+....+.                  ...|.+++.++++++||+.+++..
T Consensus       153 ~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~  231 (244)
T d1fp1d2         153 SDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC  231 (244)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEe
Confidence            9998999999999999999999998875433222111                  123789999999999999998864

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=7.2e-16  Score=128.73  Aligned_cols=115  Identities=19%  Similarity=0.206  Sum_probs=88.8

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCC---cceEEEEcccCC----CC
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA---KFVSFLKADFFT----WC  170 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~----~~  170 (274)
                      +..++..  .++.+|||+|||+|..+..|++.|++|+|+|+|+.+++.|+++....+..   ....+...|+..    ..
T Consensus        48 l~~~l~~--~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T d1xvaa_          48 LLGLLRQ--HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP  125 (292)
T ss_dssp             HHHHHHH--TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred             HHHHhhh--cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC
Confidence            4444442  34579999999999999999999999999999999999999987665432   123455556543    33


Q ss_pred             CCCCeeEEEec-ccccccCh-----hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          171 PTELFDLIFDY-TFFCAIEP-----EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       171 ~~~~fD~v~~~-~~~~~~~~-----~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +.++||+|++. .+++|++.     ++...+++++.++|+|||++++...
T Consensus       126 ~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         126 AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            45789999976 47888743     4577899999999999999988553

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=3.8e-16  Score=127.41  Aligned_cols=126  Identities=16%  Similarity=0.167  Sum_probs=97.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcC--CCCcceEEEEcccCC-CCCCCCeeEEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WCPTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~~~~~fD~v~  179 (274)
                      ..|+.+|||+|||+|.++..|++   +..+|+++|+++++++.|++++...  ...+++.+..+|+.+ ..+++.||.|+
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~  173 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV  173 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEE
Confidence            45678999999999999999987   5679999999999999999988753  345789999999987 46678999998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh-cCCCcEEEEee
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ-PMGFQAISIVD  248 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~~~~~~  248 (274)
                      .     +++  +.+.++.++.++|||||++++.....          -....+.+.++ +.||..+++.+
T Consensus       174 l-----dlp--~P~~~l~~~~~~LkpGG~lv~~~P~i----------~Qv~~~~~~l~~~~~f~~i~~~E  226 (264)
T d1i9ga_         174 L-----DML--APWEVLDAVSRLLVAGGVLMVYVATV----------TQLSRIVEALRAKQCWTEPRAWE  226 (264)
T ss_dssp             E-----ESS--CGGGGHHHHHHHEEEEEEEEEEESSH----------HHHHHHHHHHHHHSSBCCCEEEC
T ss_pred             E-----ecC--CHHHHHHHHHhccCCCCEEEEEeCcc----------ChHHHHHHHHHHcCCeecceEEE
Confidence            4     343  22578899999999999998876322          13445555554 55787655443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=1.6e-15  Score=120.71  Aligned_cols=106  Identities=23%  Similarity=0.172  Sum_probs=87.2

Q ss_pred             HHHHhcC-CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024008           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (274)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~  173 (274)
                      ..+++.+ ..++.+|||+|||+|..+..+++   +..+|+++|+++++++.|+++....+. .++.++.+|..+ ....+
T Consensus        65 a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHcccccc
Confidence            3455555 44568999999999999998876   566999999999999999999988765 468899999877 44457


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +||+|++..+++++++        .+.+.|+|||++++..
T Consensus       144 ~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred             chhhhhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence            8999999999988752        4677899999998855

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=2.7e-15  Score=118.81  Aligned_cols=134  Identities=19%  Similarity=0.152  Sum_probs=94.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCC---CCeeEEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPT---ELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~---~~fD~v~  179 (274)
                      ..|+.+|||+|||+|..+..+++  +..+|+|+|+++.+++.|++++...   +++.++.+|...+ ...   ..+|+|+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEEEEE
Confidence            45678999999999999999887  4459999999999999999998776   4799999998873 222   3455554


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .  .+.+.  .+...++.++.++|||||++++...........++.. ...+..+.++ +||++++...
T Consensus       131 ~--~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~-~~~~~~~~l~-~gf~i~E~i~  193 (209)
T d1nt2a_         131 Q--DIAQK--NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEE-VFKSVLKEME-GDFKIVKHGS  193 (209)
T ss_dssp             E--CCCST--THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHH-HHHHHHHHHH-TTSEEEEEEE
T ss_pred             e--cccCh--hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHH-HHHHHHHHHH-cCCEEEEEEc
Confidence            3  23332  4556789999999999999998875433222221111 1223333343 6999987665

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.59  E-value=8.1e-15  Score=115.44  Aligned_cols=128  Identities=13%  Similarity=0.066  Sum_probs=99.9

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~  183 (274)
                      ...|||||||+|..+..+++  +...++|+|+++.++..|.++....++ .|+.++.+|+..   ..+++.+|.|+...+
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence            35799999999999999988  778999999999999999999988877 479999999876   367889999998877


Q ss_pred             ccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          184 FCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       184 ~~~~~~~~------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      ..+.....      ...+++.+.++|||||.|++..-.          ..-.+.+.+.+.+.|+......
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~----------~~y~~~~~~~~~~~~~~~~~~~  168 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN----------RGLFEYSLKSFSEYGLLLTYVS  168 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC----------HHHHHHHHHHHHHHTCEEEEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC----------hHHHHHHHHHHHHCCCccccCC
Confidence            66543221      147899999999999999886510          0013556677777776654443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5e-15  Score=118.49  Aligned_cols=101  Identities=20%  Similarity=0.167  Sum_probs=83.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCC-CCCCCCeeE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFT-WCPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~-~~~~~~fD~  177 (274)
                      ..++.+|||||||+|+.+..+++   +..+|+++|+++++++.|++++...+.    ..++.+..+|... ....++||.
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~  153 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  153 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence            45678999999999999888776   567999999999999999999876443    2478999999887 445678999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |++..++.+++        +.+.+.|||||++++...
T Consensus       154 I~~~~~~~~ip--------~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         154 IHVGAAAPVVP--------QALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred             hhhhcchhhcC--------HHHHhhcCCCcEEEEEEc
Confidence            99999988875        347789999999998663

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.57  E-value=1.7e-14  Score=116.80  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=104.5

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      .+|||||||+|..+..+++  ++.++++.|. |+.++       ..+..++++++.+|+++..+  .+|+++...++|++
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~~p--~aD~~~l~~vLHdw  151 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTSIP--NADAVLLKYILHNW  151 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTCCC--CCSEEEEESCGGGS
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCcccCceEEEecCcccCCC--CCcEEEEEeecccC
Confidence            6899999999999999988  7889999998 55443       23345789999999987544  57999999999999


Q ss_pred             ChhHHHHHHHHHHhcccCC---cEEEEEEccCCCCCCCC-----------------CcccCHHHHHHHHhcCCCcEEEEe
Q 024008          188 EPEMRAAWAQKIKDFLKPD---GELITLMFPISDHVGGP-----------------PYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~g---G~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +++....+++++++.|+||   |++++.+.-..+....+                 ....|.+++.++++++||+.+++.
T Consensus       152 ~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~  231 (244)
T d1fp2a2         152 TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKIS  231 (244)
T ss_dssp             CHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred             ChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence            9999899999999999998   77888775433221110                 112478999999999999999986


Q ss_pred             ec
Q 024008          248 DN  249 (274)
Q Consensus       248 ~~  249 (274)
                      ..
T Consensus       232 ~~  233 (244)
T d1fp2a2         232 PL  233 (244)
T ss_dssp             EE
T ss_pred             EC
Confidence            53

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.56  E-value=7.9e-15  Score=116.89  Aligned_cols=102  Identities=20%  Similarity=0.178  Sum_probs=85.2

Q ss_pred             HHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEE
Q 024008          101 LHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLI  178 (274)
Q Consensus       101 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v  178 (274)
                      +++.+ ..++.+|||||||+|+.+..+++.+.+|+++|++++.++.|+++....   .++.++.+|... ....++||.|
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD~I  138 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYDRV  138 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEEEE
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHHHH
Confidence            44444 445689999999999999999998889999999999999999987654   589999999877 4445789999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ++..++.+++        +.+.+.|+|||++++..
T Consensus       139 iv~~a~~~ip--------~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         139 VVWATAPTLL--------CKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EESSBBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred             Hhhcchhhhh--------HHHHHhcCCCCEEEEEE
Confidence            9998888775        34678899999998864

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.2e-14  Score=121.97  Aligned_cols=126  Identities=15%  Similarity=0.129  Sum_probs=90.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcC----------CCCcceEEEEcccCCC---
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL----------PNAKFVSFLKADFFTW---  169 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~----------~~~~~v~~~~~d~~~~---  169 (274)
                      ..++.+|||+|||+|.++..|++   +..+|+++|+++++++.|++++...          ...+++++..+|+...   
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            45678999999999999999987   5679999999999999999987642          3446899999999763   


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC--CCcEEEEe
Q 024008          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM--GFQAISIV  247 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Gf~~~~~~  247 (274)
                      .+...||.|+.     +++  +.+.++.++.++|||||++++...+.          -......+.++..  ||..+++.
T Consensus       176 ~~~~~fD~V~L-----D~p--~P~~~l~~~~~~LKpGG~lv~~~P~i----------~Qv~~~~~~l~~~~~~f~~i~~~  238 (324)
T d2b25a1         176 IKSLTFDAVAL-----DML--NPHVTLPVFYPHLKHGGVCAVYVVNI----------TQVIELLDGIRTCELALSCEKIS  238 (324)
T ss_dssp             -----EEEEEE-----CSS--STTTTHHHHGGGEEEEEEEEEEESSH----------HHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             cCCCCcceEee-----cCc--CHHHHHHHHHHhccCCCEEEEEeCCH----------HHHHHHHHHHHHcCCCceeeEEE
Confidence            34568999984     232  22457899999999999999876221          1233444455543  57665554


Q ss_pred             e
Q 024008          248 D  248 (274)
Q Consensus       248 ~  248 (274)
                      +
T Consensus       239 E  239 (324)
T d2b25a1         239 E  239 (324)
T ss_dssp             C
T ss_pred             E
Confidence            4

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=5.2e-14  Score=112.42  Aligned_cols=134  Identities=16%  Similarity=0.155  Sum_probs=97.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v  178 (274)
                      ..++.+|||+|||+|..+..+++   +..+|+|+|+++.+++.+++++...   .++..+..|....    .....+|+|
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~~vD~i  147 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCcccccccccceEEE
Confidence            34678999999999999999988   5679999999999999999998766   4577888887652    234678888


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ++.  +.+.  +....++.++.+.|+|||++++............+.. -..++.+++ +.||++++...
T Consensus       148 ~~d--~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~-v~~~v~~l~-~~gf~iie~i~  211 (227)
T d1g8aa_         148 FED--VAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQ-VFREVEREL-SEYFEVIERLN  211 (227)
T ss_dssp             EEC--CCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHH-HHHHHHHHH-HTTSEEEEEEE
T ss_pred             EEE--cccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHH-HHHHHHHHH-HcCCEEEEEEc
Confidence            753  2222  4567789999999999999998876554332222111 123344444 55999987655

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=3.2e-14  Score=116.17  Aligned_cols=133  Identities=12%  Similarity=0.030  Sum_probs=105.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++++..+++.++++++.+|+.+..+.+.||.|++....
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~  184 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  184 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence            4567899999999999999988855 599999999999999999999999988999999999998778899999876443


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      ..      ..++....+.|++||.+.+..+.......    ....+.+.++.+..||.+..+..
T Consensus       185 ~~------~~~l~~a~~~l~~gG~lh~~~~~~~~~~~----~~~~e~~~~~~~~~g~~v~~~~~  238 (260)
T d2frna1         185 RT------HEFIPKALSIAKDGAIIHYHNTVPEKLMP----REPFETFKRITKEYGYDVEKLNE  238 (260)
T ss_dssp             SG------GGGHHHHHHHEEEEEEEEEEEEEEGGGTT----TTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             ch------HHHHHHHHhhcCCCCEEEEEeccccccch----hhHHHHHHHHHHHcCCceEEEEE
Confidence            21      24567788899999998776544322211    11356777888899998765543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.7e-14  Score=122.14  Aligned_cols=103  Identities=20%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..+++.|+ +|+++|.++ ++..|+++...++..++++++.+|+.+. .++++||+|++..+.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            3578999999999999999999886 899999986 6788999888888888999999999884 567899999998777


Q ss_pred             cccCh-hHHHHHHHHHHhcccCCcEEE
Q 024008          185 CAIEP-EMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       185 ~~~~~-~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      +.+.. .....++..+.++|||||+++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCCCeEEE
Confidence            66543 456778888999999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.8e-14  Score=121.39  Aligned_cols=102  Identities=23%  Similarity=0.232  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024008          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~  185 (274)
                      ++.+|||||||+|.+++.+++.|+ +|+++|.++. ...++++...+++.++++++.+|+.+. .+.++||+|++..+.+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            578999999999999999999886 7999999875 577777777888888999999999984 4568999999987766


Q ss_pred             ccCh-hHHHHHHHHHHhcccCCcEEE
Q 024008          186 AIEP-EMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       186 ~~~~-~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      .+.. .....++..+.++|+|||.++
T Consensus       112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         112 CLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            6543 457789999999999999987

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.52  E-value=8.1e-14  Score=112.88  Aligned_cols=130  Identities=18%  Similarity=0.238  Sum_probs=103.6

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      .+|||||||+|..+..+++  ++.+++++|+.+ .+       ......+++.++.+|+++..|.  .|+++..++++.+
T Consensus        83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~~~~~r~~~~~~d~~~~~P~--ad~~~l~~vlh~~  152 (243)
T d1kyza2          83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VI-------EDAPSYPGVEHVGGDMFVSIPK--ADAVFMKWICHDW  152 (243)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TT-------TTCCCCTTEEEEECCTTTCCCC--CSCEECSSSSTTS
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hh-------hhcccCCceEEecccccccCCC--cceEEEEEEeecC
Confidence            6899999999999999988  788999999854 32       2233347899999999886654  5788889999999


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC-------------------CcccCHHHHHHHHhcCCCcEEEEee
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP-------------------PYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      +++....++++++++|+|||.+++.+.-..+....+                   ....+.+++.++++++||+.+++..
T Consensus       153 ~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~  232 (243)
T d1kyza2         153 SDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHC  232 (243)
T ss_dssp             CHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEE
Confidence            998899999999999999999998875432221111                   1124689999999999999999875


Q ss_pred             c
Q 024008          249 N  249 (274)
Q Consensus       249 ~  249 (274)
                      .
T Consensus       233 ~  233 (243)
T d1kyza2         233 N  233 (243)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=5.5e-14  Score=118.60  Aligned_cols=141  Identities=17%  Similarity=0.064  Sum_probs=105.9

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CC
Q 024008           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CP  171 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~  171 (274)
                      ...++.....++.+|||+|||+|..+..++..|+ +|+++|+++.+++.+++|+..+++.++++++.+|+++.     ..
T Consensus       135 ~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~  214 (324)
T d2as0a2         135 NRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK  214 (324)
T ss_dssp             HHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc
Confidence            3344444445678999999999999999988776 89999999999999999999999888999999998762     23


Q ss_pred             CCCeeEEEecccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH----hcCC
Q 024008          172 TELFDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL----QPMG  240 (274)
Q Consensus       172 ~~~fD~v~~~~~~~~~~~-------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~G  240 (274)
                      .++||+|++.........       .....++..+.++|+|||.++++..+.         .++.+++.+++    ..+|
T Consensus       215 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~---------~~~~~~f~~~v~~a~~~~g  285 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ---------HVDLQMFKDMIIAAGAKAG  285 (324)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT---------TSCHHHHHHHHHHHHHHTT
T ss_pred             cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc---------cCCHHHHHHHHHHHHHHcC
Confidence            578999998765433221       124567888999999999999887443         23555665554    4556


Q ss_pred             CcEEEEe
Q 024008          241 FQAISIV  247 (274)
Q Consensus       241 f~~~~~~  247 (274)
                      -....+.
T Consensus       286 r~~~~~~  292 (324)
T d2as0a2         286 KFLKMLE  292 (324)
T ss_dssp             EEEEESS
T ss_pred             CeEEEee
Confidence            4444443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7e-14  Score=117.49  Aligned_cols=104  Identities=19%  Similarity=0.209  Sum_probs=86.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~  184 (274)
                      .++.+|||||||+|.+++.+++.|+ +|+++|.++.+. .+++.....+..++++++.+|+.+. .+.++||+|++....
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence            4678999999999999999999886 899999999875 4566666666778999999999984 556899999998776


Q ss_pred             cccCh-hHHHHHHHHHHhcccCCcEEEE
Q 024008          185 CAIEP-EMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       185 ~~~~~-~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      +++.. .....++....++|+|||+++-
T Consensus       113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         113 YFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eecccccccHHHHHHHHhcCCCCcEEec
Confidence            66543 4667788888999999999873

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.49  E-value=6.7e-14  Score=110.72  Aligned_cols=110  Identities=20%  Similarity=0.184  Sum_probs=90.1

Q ss_pred             cHHH-HHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC
Q 024008           95 APII-VHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC  170 (274)
Q Consensus        95 ~~~~-~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~  170 (274)
                      .|.+ ..+++.+ ..++.+|||||||+|+.+..+++ .+.+|+++|.+++.++.|++++...+. .++.++.+|... ..
T Consensus        63 ~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          63 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFP  141 (215)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG
T ss_pred             hhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCc
Confidence            4444 3344433 45668999999999999998887 477899999999999999999998876 579999999987 55


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ..++||.|++......++.        .+.+.|+|||++++..
T Consensus       142 ~~~pfD~Iiv~~a~~~ip~--------~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         142 PKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             ccCcceeEEeecccccCCH--------HHHHhcCCCCEEEEEE
Confidence            5688999999998887763        3677899999998865

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.49  E-value=1.7e-13  Score=107.74  Aligned_cols=128  Identities=14%  Similarity=0.076  Sum_probs=96.3

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~  183 (274)
                      ...|||||||+|..+..+|+  +...++|+|+++.++..|.++....++ .|+.++.+|+..   ..+...+|.|++..+
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence            35799999999999999988  688999999999999999998887766 479999999876   356788999987665


Q ss_pred             ccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          184 FCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       184 ~~~~~~~~------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      -.+.-..+      ...+++.+.++|+|||.+++.+-..       .+   -+++.+.+...|+......
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~-------~Y---~~~~le~~~~~~~~~~~~~  170 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR-------GL---FEYSLVSFSQYGMKLNGVW  170 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH-------HH---HHHHHHHHHHHTCEEEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCc-------cH---HHHHHHHHHHCCccccccc
Confidence            43321111      1578999999999999998865100       01   2345566667777655544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.47  E-value=7.2e-14  Score=105.02  Aligned_cols=104  Identities=19%  Similarity=0.131  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~  183 (274)
                      ..+.+|||+|||+|..++.++..|+ +|+++|.++.+++.+++++...+..++++++++|+...  ...++||+|++.++
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            4678999999999999998888776 99999999999999999999988888899999999772  34578999998766


Q ss_pred             ccccChhHHHHHHHHHH--hcccCCcEEEEEE
Q 024008          184 FCAIEPEMRAAWAQKIK--DFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~--~~L~~gG~l~~~~  213 (274)
                      +..   ......++.+.  ++|+|||.+++..
T Consensus        93 y~~---~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          93 YAK---ETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             SHH---HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             hcc---chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            542   34455566654  4699999998765

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-12  Score=106.14  Aligned_cols=130  Identities=14%  Similarity=0.120  Sum_probs=99.2

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCeeEEE
Q 024008          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~fD~v~  179 (274)
                      ..++||+|||+|..+..++.  ++++++|+|+++++++.|++++..+++.+++.+...+....       ...++||+|+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            36899999999999999887  68999999999999999999999999999999988765541       1245799999


Q ss_pred             ecccccccChh---------------------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc
Q 024008          180 DYTFFCAIEPE---------------------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK  226 (274)
Q Consensus       180 ~~~~~~~~~~~---------------------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~  226 (274)
                      |+.++..-...                                 -...++++....++..|++.......          
T Consensus       142 sNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~----------  211 (250)
T d2h00a1         142 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKK----------  211 (250)
T ss_dssp             ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESST----------
T ss_pred             ecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecch----------
Confidence            99988742110                                 12345566667788888776554211          


Q ss_pred             cCHHHHHHHHhcCCCcEEEEee
Q 024008          227 VSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       227 ~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      -+.+++.+.+++.|+..+.+.+
T Consensus       212 ~~l~~i~~~L~~~g~~~i~~ie  233 (250)
T d2h00a1         212 CSLAPLKEELRIQGVPKVTYTE  233 (250)
T ss_dssp             TSHHHHHHHHHHTTCSEEEEEE
T ss_pred             hhHHHHHHHHHHcCCCeEEEEE
Confidence            1578899999999998766655

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=3.3e-13  Score=113.34  Aligned_cols=132  Identities=21%  Similarity=0.071  Sum_probs=100.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~  181 (274)
                      .++.+|||++||+|..+..++..+.+|+++|+|+.+++.|++++..+++. +++++.+|.++.     ...++||+|++.
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            45789999999999999998876779999999999999999999999874 699999998762     234689999987


Q ss_pred             ccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH----HHhcCCCcEEEEee
Q 024008          182 TFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE----VLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~-------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Gf~~~~~~~  248 (274)
                      ........       .....++..+.++|+|||.+++...+.         .++.+++.+    .+..+|-++..+..
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~---------~~~~~~f~~~v~~a~~~a~~~~~~~~~  291 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH---------HMTEPLFYAMVAEAAQDAHRLLRVVEK  291 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT---------TSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc---------ccCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence            65332211       223567889999999999999877543         234555544    45566765555544

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=1.6e-13  Score=105.13  Aligned_cols=106  Identities=18%  Similarity=0.105  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~  182 (274)
                      ..++.+|||+|||+|..++.++..|++++++|.++.+++.+++++...+...++....+|.+.   .....+||+|++..
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP  118 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence            355789999999999999998889999999999999999999999988776666666666532   23456899999987


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ++..=.......+++  ..+|+|||++++..
T Consensus       119 PY~~~~~~~l~~l~~--~~ll~~~g~ivie~  147 (171)
T d1ws6a1         119 PYAMDLAALFGELLA--SGLVEAGGLYVLQH  147 (171)
T ss_dssp             CTTSCTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred             ccccCHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence            765411122233322  35799999888754

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.9e-13  Score=112.93  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=86.5

Q ss_pred             cHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcC-------CC-CcceEEEE
Q 024008           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSL-------PN-AKFVSFLK  163 (274)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~-------~~-~~~v~~~~  163 (274)
                      ...+.++++.... ++.+|||+|||+|..+..+++ .+ .+++|||+++.+++.|+++....       +. ..+++|++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            4556677777654 458999999999999998876 44 48999999999999998875542       11 24699999


Q ss_pred             cccCCCC-CCC--CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          164 ADFFTWC-PTE--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       164 ~d~~~~~-~~~--~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +|+.+.. .+.  .+|+|+++.. .+.  +.....+.++.+.|||||++++..
T Consensus       217 gd~~~~~~~~~~~~advi~~~~~-~f~--~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFVNNF-AFG--PEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEECCT-TTC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             CcccccccccccCcceEEEEcce-ecc--hHHHHHHHHHHHhCCCCcEEEEec
Confidence            9998732 122  3578887544 333  455678899999999999998754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=3e-13  Score=107.71  Aligned_cols=101  Identities=17%  Similarity=0.210  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC----C----CCeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCC-CCCC
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS----P----ERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFT-WCPT  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~----~----~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~-~~~~  172 (274)
                      ..++.+|||||||+|+.+..+++    .    +.+|+++|.+++.++.|+++....+.    ..++.+..+|... ..+.
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~  157 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  157 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence            34668999999999999988776    2    34899999999999999988643211    1479999999987 4556


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ++||.|++...+..++        +.+.+.|+|||++++...
T Consensus       158 ~~fD~Iiv~~a~~~~p--------~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         158 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG  191 (223)
T ss_dssp             CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred             cceeeEEEEeechhch--------HHHHHhcCCCcEEEEEEe
Confidence            7899999999988776        246789999999988653

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.38  E-value=2.2e-12  Score=107.97  Aligned_cols=136  Identities=12%  Similarity=0.017  Sum_probs=102.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~fD~v  178 (274)
                      ..++.+|||++||+|..+..++..|+ .|+++|+++.+++.+++|+..+++. .+++|+.+|+++..     ..++||+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            34578999999999999998888777 7999999999999999999988874 57999999998732     34689999


Q ss_pred             Eecccccc-----cC--hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH----HHHHhcCCCcEEEEe
Q 024008          179 FDYTFFCA-----IE--PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY----EEVLQPMGFQAISIV  247 (274)
Q Consensus       179 ~~~~~~~~-----~~--~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Gf~~~~~~  247 (274)
                      ++..+-..     ..  ......++..+.++|+|||+++++..+..         ++.+++    .+.+..+|..+..+.
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~---------~~~~~f~~~v~~a~~~~~~~~~~~~  292 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN---------MTVSQFKKQIEKGFGKQKHTYLDLQ  292 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT---------SCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CCHHHHHHHHHHHHHHcCCeEEEec
Confidence            98654211     11  02345788999999999999999875432         244444    455566788777665


Q ss_pred             ecc
Q 024008          248 DNK  250 (274)
Q Consensus       248 ~~~  250 (274)
                      ..+
T Consensus       293 ~~~  295 (317)
T d2b78a2         293 QLP  295 (317)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            433

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.36  E-value=2e-12  Score=100.87  Aligned_cols=105  Identities=21%  Similarity=0.284  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCcchhHHHhh----C----C--CCeEEEEeCChHHHHHHHHHhhcC------------------CC----
Q 024008          108 PKGRALVPGCGTGYDVVAMA----S----P--ERYVVGLEISDIAIKKAEELSSSL------------------PN----  155 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~----~----~--~~~v~~iD~s~~~~~~a~~~~~~~------------------~~----  155 (274)
                      ++.+|+++|||+|.....++    +    .  ..+++|+|+++.+++.|+...-..                  +.    
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            34699999999998643332    2    1  237999999999999998532111                  00    


Q ss_pred             --------CcceEEEEcccCC--CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008          156 --------AKFVSFLKADFFT--WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       156 --------~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~  212 (274)
                              ...+.+...+...  ..+.++||+|+|.+++.+++++....++++++++|+|||+|++.
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                    0124555565554  23457899999999999999999999999999999999998875

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.1e-12  Score=100.11  Aligned_cols=104  Identities=20%  Similarity=0.216  Sum_probs=87.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCe
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~f  175 (274)
                      ...+++|||+|||+|+.+.++++   .+.+++.+|.+++..+.|++++...++.++++++.+|+.+.       ...++|
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            34578999999999999999988   36799999999999999999999999989999999998662       235689


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+|+...     +.+....+++.+.+.|+|||.+++-+.
T Consensus       137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         137 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            9999542     334456778899999999999988553

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.35  E-value=1.9e-12  Score=107.22  Aligned_cols=107  Identities=16%  Similarity=0.065  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCC-----CCCCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC-----PTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~-----~~~~fD~v~~  180 (274)
                      .++.+|||++||+|..+..++..|++|++||.|+.+++.|++|+..+++.+ +++|+++|+++..     ..++||+|++
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            346799999999999999999999999999999999999999998877654 6999999998732     3478999998


Q ss_pred             ccc-ccccC-------hhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          181 YTF-FCAIE-------PEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~-~~~~~-------~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ... +..-.       .+....++..+..+|+|||.+++..
T Consensus       211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            654 21110       1344567788899999999766554

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=1.8e-11  Score=95.84  Aligned_cols=130  Identities=12%  Similarity=0.073  Sum_probs=91.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  184 (274)
                      ...+.+|||+|||+|..+..++..|+ +|+|+|+++.+++.+++++...+  .+.+++.+|....  .++||+|+++..+
T Consensus        44 dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~--~~~~~~~~d~~~~--~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          44 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK--GKFKVFIGDVSEF--NSRVDIVIMNPPF  119 (201)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT--TSEEEEESCGGGC--CCCCSEEEECCCC
T ss_pred             CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC--CCceEEECchhhh--CCcCcEEEEcCcc
Confidence            56788999999999999998888775 89999999999999999988776  4588999998764  4689999999887


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      .......-..++..   .+.+++.++.......         ....-+..+....||.+........
T Consensus       120 ~~~~~~~d~~~l~~---~~~~~~~v~~ih~~~~---------~~~~~i~~~~~~~g~~i~~~~~~~f  174 (201)
T d1wy7a1         120 GSQRKHADRPFLLK---AFEISDVVYSIHLAKP---------EVRRFIEKFSWEHGFVVTHRLTTKI  174 (201)
T ss_dssp             SSSSTTTTHHHHHH---HHHHCSEEEEEEECCH---------HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccccccccHHHHHH---HHhhcccchhcccchH---------HHHHHHHHHHhhcCceEEEEEEecc
Confidence            65422111122333   3334555444331110         1234466778888988766555433

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.32  E-value=3.9e-12  Score=98.88  Aligned_cols=74  Identities=20%  Similarity=0.183  Sum_probs=63.1

Q ss_pred             CCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          105 GALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       105 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      ....+++|||+|||+|.+++.++..|+ +|+++|+++.+++.|++|.      .+++++.+|+.+.  +++||+|+++.+
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l--~~~fD~Vi~NPP  116 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEI--SGKYDTWIMNPP  116 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGC--CCCEEEEEECCC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhc--CCcceEEEeCcc
Confidence            356789999999999999988888775 7999999999999999987      4589999999764  378999999988


Q ss_pred             ccc
Q 024008          184 FCA  186 (274)
Q Consensus       184 ~~~  186 (274)
                      +..
T Consensus       117 fg~  119 (197)
T d1ne2a_         117 FGS  119 (197)
T ss_dssp             C--
T ss_pred             cch
Confidence            754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=5.3e-12  Score=102.96  Aligned_cols=122  Identities=11%  Similarity=0.106  Sum_probs=93.5

Q ss_pred             CCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024008          109 KGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~  185 (274)
                      ..+|+|+|||+|..+..+++ +.++|+++|+|+.+++.|++|+...+..+++.+..+|+....+  .++||+|+++.++-
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI  190 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV  190 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence            46899999999999988877 7789999999999999999999999888889999999988443  36899999997753


Q ss_pred             cc----Ch-----hH---------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024008          186 AI----EP-----EM---------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       186 ~~----~~-----~~---------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf  241 (274)
                      .-    +.     +.         +..+-+-+.++|+|||.+++.. +..          ..+.+.+++++.||
T Consensus       191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei-g~~----------Q~~~v~~l~~~~g~  253 (271)
T d1nv8a_         191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI-GED----------QVEELKKIVSDTVF  253 (271)
T ss_dssp             CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC-CTT----------CHHHHTTTSTTCEE
T ss_pred             CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE-CHH----------HHHHHHHHHHhCCE
Confidence            21    10     00         1111122467899999877765 211          46788889999887

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=1e-11  Score=106.66  Aligned_cols=116  Identities=24%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             cHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC-------C-CcceEE-E
Q 024008           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP-------N-AKFVSF-L  162 (274)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~-------~-~~~v~~-~  162 (274)
                      ...+.++++.... ++.++||+|||+|..+..++.  ...+++|||+++.+++.|+++....+       . ...+.+ .
T Consensus       202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            4467777877754 557999999999999999987  34589999999999999998875421       1 112333 3


Q ss_pred             EcccCCCC----CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          163 KADFFTWC----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       163 ~~d~~~~~----~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .+++....    .-..+|+|+++.. ++.  +.+...+.++.+.|||||+|++..
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn~-~f~--~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNNF-LFD--EDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCT-TCC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eechhhccccccccccceEEEEecc-cCc--hHHHHHHHHHHHhcCCCcEEEEec
Confidence            44444311    1135788887653 222  566788999999999999998754

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.27  E-value=6.8e-12  Score=96.73  Aligned_cols=115  Identities=15%  Similarity=0.048  Sum_probs=89.3

Q ss_pred             HHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---
Q 024008           96 PIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---  169 (274)
Q Consensus        96 ~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---  169 (274)
                      ..-++++..+  ...+.+|||++||+|.+++.++..|+ +|+++|.++.+++.+++++...+..++++++.+|+.+.   
T Consensus        27 ~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~  106 (182)
T d2fhpa1          27 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ  106 (182)
T ss_dssp             HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhh
Confidence            3334444432  34678999999999999999999888 79999999999999999998777767899999999762   


Q ss_pred             --CCCCCeeEEEecccccccChhHHHHHHHHHHh--cccCCcEEEEEE
Q 024008          170 --CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKD--FLKPDGELITLM  213 (274)
Q Consensus       170 --~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~--~L~~gG~l~~~~  213 (274)
                        ....+||+|++..++..-   .....++.+.+  +|+++|++++..
T Consensus       107 ~~~~~~~fDlIflDPPY~~~---~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         107 FYEEKLQFDLVLLDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             HHHTTCCEEEEEECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             hcccCCCcceEEechhhhhh---HHHHHHHHHHHCCCCCCCEEEEEEc
Confidence              234589999988876532   23456666654  699999887654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=6e-12  Score=99.56  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=84.4

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---  170 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---  170 (274)
                      .+..++.  ..++.+|||+|||+|..+.++++   .+.+++++|+++..++.|++++...++.++++++.+|..+..   
T Consensus        47 lL~~lv~--~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l  124 (214)
T d2cl5a1          47 IMDAVIR--EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQL  124 (214)
T ss_dssp             HHHHHHH--HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGH
T ss_pred             HHHHHHH--hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccch
Confidence            3444444  34568999999999999999987   467999999999999999999999888889999999987632   


Q ss_pred             ----CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          171 ----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       171 ----~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                          ..+.||+|+.-+.-..   ......+.+..++|+|||++++
T Consensus       125 ~~~~~~~~~D~ifiD~~~~~---~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         125 KKKYDVDTLDMVFLDHWKDR---YLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HHHSCCCCEEEEEECSCGGG---HHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hhcccccccceeeecccccc---cccHHHHHHHhCccCCCcEEEE
Confidence                3467999996532211   1122346677789999998765

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=2.9e-11  Score=93.68  Aligned_cols=132  Identities=18%  Similarity=0.212  Sum_probs=98.1

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--
Q 024008           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--  168 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--  168 (274)
                      .....+..++.  ..++..+||++||+|..+..+++  ++.+++|+|.++.+++.|+++....+  .++.++.+++.+  
T Consensus        10 Vll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~   85 (192)
T d1m6ya2          10 VMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREAD   85 (192)
T ss_dssp             TTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHH
T ss_pred             hHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHH
Confidence            33344444443  56678999999999999998877  67899999999999999999987754  679999999876  


Q ss_pred             ----CCCCCCeeEEEecccccc--c-----ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024008          169 ----WCPTELFDLIFDYTFFCA--I-----EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       169 ----~~~~~~fD~v~~~~~~~~--~-----~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                          ....++||.|+.-..+..  +     .-......+....++|+|||.+++..|+..          ....+.+.+.
T Consensus        86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~----------Edr~vk~~f~  155 (192)
T d1m6ya2          86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL----------EDRIVKETFR  155 (192)
T ss_dssp             HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH----------HHHHHHHHHH
T ss_pred             HHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH----------HHHHHHHHHh
Confidence                233478999986533321  1     113456888999999999999999886542          2345666666


Q ss_pred             c
Q 024008          238 P  238 (274)
Q Consensus       238 ~  238 (274)
                      .
T Consensus       156 ~  156 (192)
T d1m6ya2         156 N  156 (192)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.25  E-value=1.2e-11  Score=98.38  Aligned_cols=102  Identities=14%  Similarity=0.187  Sum_probs=86.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--------CCCCe
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------PTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~f  175 (274)
                      ..+.+|||+|+++|+.+.++++   .+.+++.+|.+++..+.|+++....+..++++++.+|+.+..        ..++|
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            4578999999999999999986   467999999999999999999999999899999999997621        14589


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      |+|+.-.     +......+++.+.+.|+|||.+++-.
T Consensus       138 D~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         138 DFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             SEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             eEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence            9999532     23455678899999999999998854

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=2.5e-11  Score=93.68  Aligned_cols=103  Identities=10%  Similarity=0.044  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~  183 (274)
                      ..+.+|||++||+|..++.++.+|+ +|+.||.++.+++.+++++...+. .+++++.+|++..  ....+||+|++..+
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPP  120 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP  120 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCc
Confidence            3567999999999999999888887 899999999999999999987655 4689999998872  34568999999888


Q ss_pred             ccccChhHHHHHHHHHHh--cccCCcEEEEEE
Q 024008          184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~--~L~~gG~l~~~~  213 (274)
                      +..-   ....++..+.+  +|+++|.+++..
T Consensus       121 Y~~~---~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         121 FRRG---LLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             SSTT---THHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cccc---hHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            6642   33455566654  699999988865

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.8e-09  Score=91.86  Aligned_cols=142  Identities=19%  Similarity=0.185  Sum_probs=102.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEec
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~  181 (274)
                      .++.+|||+-||+|.++..|++.+.+|+|+|.++.+++.|++++..++. .+++|+.+|.....     ....+|+|+..
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhhhhhhhhhhccCceEEeC
Confidence            3457999999999999999999999999999999999999999998887 47999999987732     23579999965


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhH
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK  261 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~  261 (274)
                      ..=..+     ..++..+.+ ++|.-++++++.+.           |...=.+.|.+.||++..+...+. ++.-...|.
T Consensus       290 PPR~G~-----~~~~~~l~~-~~~~~ivYVSCnp~-----------TlaRDl~~l~~~gy~l~~i~~~D~-FP~T~HvE~  351 (358)
T d1uwva2         290 PARAGA-----AGVMQQIIK-LEPIRIVYVSCNPA-----------TLARDSEALLKAGYTIARLAMLDM-FPHTGHLES  351 (358)
T ss_dssp             CCTTCC-----HHHHHHHHH-HCCSEEEEEESCHH-----------HHHHHHHHHHHTTCEEEEEEEECC-STTSSCCEE
T ss_pred             CCCccH-----HHHHHHHHH-cCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCeEeEEEEEec-CCCCccEEE
Confidence            443322     235566665 36777787877322           332333455667999999887553 222335666


Q ss_pred             HHHhhh
Q 024008          262 LGRWKR  267 (274)
Q Consensus       262 ~~~~~~  267 (274)
                      +..+.|
T Consensus       352 v~~l~R  357 (358)
T d1uwva2         352 MVLFSR  357 (358)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            665544

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=6.2e-10  Score=93.61  Aligned_cols=134  Identities=14%  Similarity=0.149  Sum_probs=96.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~  179 (274)
                      .++.+|||.+||+|.++..+..       ...+++|+|+++.++..|+.+....+  ....+..+|.....+..+||+|+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~fD~vi  193 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR--QKMTLLHQDGLANLLVDPVDVVI  193 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--CCCEEEESCTTSCCCCCCEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh--hhhhhhccccccccccccccccc
Confidence            3457999999999999987753       23379999999999999998876654  35778888887777778999999


Q ss_pred             ecccccccChhH----------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008          180 DYTFFCAIEPEM----------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       180 ~~~~~~~~~~~~----------------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      ++.++.......                ...++.++.+.|+|||++.++.......      .-....+++.+.+.+ .+
T Consensus       194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~------~~~~~~lR~~L~~~~-~i  266 (328)
T d2f8la1         194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG------TSDFAKVDKFIKKNG-HI  266 (328)
T ss_dssp             EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG------STTHHHHHHHHHHHE-EE
T ss_pred             cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcccc------CchhHHHHHHHHhCC-cE
Confidence            999885432111                2347899999999999987766432111      114556777766654 44


Q ss_pred             EEEeec
Q 024008          244 ISIVDN  249 (274)
Q Consensus       244 ~~~~~~  249 (274)
                      ..+...
T Consensus       267 ~~ii~l  272 (328)
T d2f8la1         267 EGIIKL  272 (328)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            444443

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=8.3e-09  Score=80.35  Aligned_cols=128  Identities=14%  Similarity=0.164  Sum_probs=98.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008          106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  183 (274)
                      ..++.+|+|+|||.|..++.++  .+..+++.+|.+..-+...++.....++. +++++...+.+.....+||+|++..+
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fD~V~sRA~  141 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF  141 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS
T ss_pred             hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhccccccceehhhhh
Confidence            3456799999999999887776  48889999999999999999988887774 79999999998777778999998877


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~  253 (274)
                      -.      ...+++-+...++++|.+++.-...           ..+|+..+  ..+|+...+.....+.
T Consensus       142 ~~------~~~ll~~~~~~l~~~g~~~~~KG~~-----------~~eEl~~~--~~~~~~~~~~~~~~p~  192 (207)
T d1jsxa_         142 AS------LNDMVSWCHHLPGEQGRFYALKGQM-----------PEDEIALL--PEEYQVESVVKLQVPA  192 (207)
T ss_dssp             SS------HHHHHHHHTTSEEEEEEEEEEESSC-----------CHHHHHTS--CTTEEEEEEEEEECC-
T ss_pred             cC------HHHHHHHHHHhcCCCcEEEEECCCC-----------HHHHHHhh--hcCCEEEEEEEecCCC
Confidence            32      2467788899999999998877211           34555332  2478776666655443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=2.2e-09  Score=82.43  Aligned_cols=104  Identities=14%  Similarity=0.122  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCC----CCCCCCeeEEEe
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFT----WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~----~~~~~~fD~v~~  180 (274)
                      ..+.+|||+.||||.+++..+.+|+ .|+.||.++.++...++++...+..+ ...+...|...    .....+||+|++
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            3567999999999999999999998 89999999999999999998776533 46667776654    223457999999


Q ss_pred             cccccccChhHHHHHHHHHHh--cccCCcEEEEEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKD--FLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~--~L~~gG~l~~~~  213 (274)
                      -.++..   ......+..+..  +|+++|++++..
T Consensus       122 DPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         122 DPPFHF---NLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             CCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             chhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            888764   234556676654  799999888865

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.94  E-value=2.7e-09  Score=87.16  Aligned_cols=108  Identities=19%  Similarity=0.132  Sum_probs=80.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCC---------CCcceEEEEcccCC-CCCCCC
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSFLKADFFT-WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~-~~~~~~  174 (274)
                      ...+.+||.+|+|.|..+..+.+ ...+++++|+++.+++.|++......         ..++++++.+|... ....++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            34568999999999999998877 44589999999999999998765332         24789999999976 223478


Q ss_pred             eeEEEecccccccChhH--HHHHHHHHHhcccCCcEEEEEE
Q 024008          175 FDLIFDYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~--~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ||+|+.-..-..-+...  ...+++.+.+.|+|||++++-.
T Consensus       150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            99999643321111111  2578899999999999988765

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=5.3e-09  Score=86.81  Aligned_cols=107  Identities=14%  Similarity=0.144  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC--C--CCcceEEEEcccCCC--CCCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL--P--NAKFVSFLKADFFTW--CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~--~~~~~fD~v  178 (274)
                      ..+++||.||+|.|..+..+++  +..+|+++|+++++++.|++.++..  +  ..++++++.+|....  ...++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            4468999999999999998877  3559999999999999999987431  1  246899999999882  345689999


Q ss_pred             Eeccc--cccc-Chh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTF--FCAI-EPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~--~~~~-~~~--~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +.-..  +..- +..  ....+++.+.+.|+|||++++-.
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            96432  2111 111  12568899999999999988754

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.83  E-value=1e-08  Score=81.65  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=67.5

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCC
Q 024008           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE  173 (274)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~  173 (274)
                      ..+..+++... .++.+|||||||+|.++..|++.+.+++++|+++..++.++++....   ++++++.+|+.+.. +..
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~~   84 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN   84 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccccc
Confidence            33455555553 45689999999999999999998899999999999999999987655   57999999999843 333


Q ss_pred             CeeEEEeccccc
Q 024008          174 LFDLIFDYTFFC  185 (274)
Q Consensus       174 ~fD~v~~~~~~~  185 (274)
                      ....|+++-.+.
T Consensus        85 ~~~~vv~NLPYn   96 (235)
T d1qama_          85 QSYKIFGNIPYN   96 (235)
T ss_dssp             CCCEEEEECCGG
T ss_pred             ccceeeeeehhh
Confidence            334566655554

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=1.6e-08  Score=80.20  Aligned_cols=133  Identities=17%  Similarity=0.179  Sum_probs=100.6

Q ss_pred             CCCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEec
Q 024008          108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v~~~  181 (274)
                      ...+|+|+|+|.|.-++.++  .+..+++.+|-+..-+...+......++. ++.++...+...    ...++||+|++.
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~sR  148 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR  148 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEEh
Confidence            34799999999998887665  48889999999999999988887777764 688888877652    224689999998


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~  255 (274)
                      .+-.      ...+++-....+++||.+++.-        |..+.-..++..+.+...|+++..+..+..+...
T Consensus       149 Ava~------l~~ll~~~~~~l~~~g~~i~~K--------G~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~  208 (239)
T d1xdza_         149 AVAR------LSVLSELCLPLVKKNGLFVALK--------AASAEEELNAGKKAITTLGGELENIHSFKLPIEE  208 (239)
T ss_dssp             CCSC------HHHHHHHHGGGEEEEEEEEEEE--------CC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTC
T ss_pred             hhhC------HHHHHHHHhhhcccCCEEEEEC--------CCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCC
Confidence            6633      2467888999999999998877        3322223445556778889999888887665443

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.80  E-value=2.6e-08  Score=75.98  Aligned_cols=125  Identities=16%  Similarity=0.222  Sum_probs=95.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeEEE
Q 024008          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD~v~  179 (274)
                      ..+++.++|+.+|.|+.+..+++.+.+|+|+|.++.++..+++..     ..++.++..++.+.      ...+++|.|+
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~-----~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH-----LPGLTVVQGNFRHLKRHLAALGVERVDGIL   90 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc-----ccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence            567789999999999999999998889999999999999998753     25799999888761      2346799999


Q ss_pred             eccccccc--Ch-----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008          180 DYTFFCAI--EP-----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       180 ~~~~~~~~--~~-----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~  245 (274)
                      ...-+...  +.     ......++...+.|++||.+++..++..          ....+.+.+++.++..+.
T Consensus        91 ~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~----------Ed~ivk~~~~e~~~k~i~  153 (182)
T d1wg8a2          91 ADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL----------EDRVVKRFLRESGLKVLT  153 (182)
T ss_dssp             EECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH----------HHHHHHHHHHHHCSEESC
T ss_pred             EEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc----------hhHHHHHHHhhccceecc
Confidence            75433221  11     2345678899999999999999886442          355688888988876543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=4e-08  Score=79.89  Aligned_cols=135  Identities=15%  Similarity=0.108  Sum_probs=93.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhc---CCCCcceEEEEcccCC--CCCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFT--WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~-~~~v~~iD~s~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~--~~~~~~fD~v~  179 (274)
                      ..+.+||-+|.|.|..+..+.+ . ..+++++|+++++++.|++..+.   .-..++++++.+|...  ....++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4568999999999999999987 3 45999999999999999998753   1124789999999987  23457899999


Q ss_pred             ecccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .-..-..-...  ....+++.+.+.|+|||+++.-..++...      .-....+.+.+++. |..+..-.
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~------~~~~~~i~~tl~~~-F~~v~~y~  217 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT------PELITNVQRDVKEI-FPITKLYT  217 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC------HHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcccc------HHHHHHHHHhhhhh-cCceEEEE
Confidence            65321110000  12467899999999999988765222110      01234566666665 55544443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=1e-08  Score=84.05  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~fD~v~  179 (274)
                      ..+.+||-||.|.|..+..+.+  +..+|+++|+++.+++.+++..+...   ..++++++.+|....  ...++||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            4468999999999999999988  34589999999999999999765421   247899999999872  3356899999


Q ss_pred             eccccccc-Chh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAI-EPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~-~~~--~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .-..-... +..  ....+++.+.+.|+|||++++-.
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            64321110 101  12578899999999999998765

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=4e-08  Score=80.48  Aligned_cols=107  Identities=15%  Similarity=0.165  Sum_probs=81.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcC---CCCcceEEEEcccCCC---CCCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFTW---CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~---~~~~~fD~v  178 (274)
                      ..+.+||-+|.|.|..+..+.+ .+ .+++++|+++++++.+++..+..   ...++++++.+|....   ...++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            4457999999999999999988 34 58999999999999999976431   1247899999998872   334689999


Q ss_pred             EecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +.-..=..-...  ....+++.+.+.|+|||++++-.
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            964321110111  12568899999999999999875

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.70  E-value=1.9e-08  Score=82.89  Aligned_cols=107  Identities=21%  Similarity=0.227  Sum_probs=79.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~fD~v~  179 (274)
                      ..+.+||-||.|.|..+..+.+ .+ .+|+++|+++.+++.+++..+...   ..++++++.+|..+.  ...++||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            4468999999999999999988 33 599999999999999999876532   147899999999872  3457899999


Q ss_pred             ecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .-..-..-+..  ....+++.+.+.|+|||+++.-.
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            75332111111  13578899999999999998865

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.68  E-value=2.4e-08  Score=78.65  Aligned_cols=129  Identities=26%  Similarity=0.348  Sum_probs=86.9

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024008           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  172 (274)
                      ....++... ..++.+|||.|||+|.++..+.+   ....++|+|+++..+..          ..+..++.+|.......
T Consensus         7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~~~   76 (223)
T d2ih2a1           7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWEPG   76 (223)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCCCS
T ss_pred             HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhccccc
Confidence            333344433 34457999999999999887765   45689999999864322          23467888898887777


Q ss_pred             CCeeEEEecccccccCh---------------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc
Q 024008          173 ELFDLIFDYTFFCAIEP---------------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY  225 (274)
Q Consensus       173 ~~fD~v~~~~~~~~~~~---------------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~  225 (274)
                      .+||+|+++..+.....                           +....++.+..+.|++||++.++.....-.  +   
T Consensus        77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~--~---  151 (223)
T d2ih2a1          77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLV--L---  151 (223)
T ss_dssp             SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGT--C---
T ss_pred             cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeecc--C---
Confidence            89999999988643210                           012466789999999999988776432111  0   


Q ss_pred             ccCHHHHHHHHhcCCC
Q 024008          226 KVSVSDYEEVLQPMGF  241 (274)
Q Consensus       226 ~~~~~~~~~~~~~~Gf  241 (274)
                       -..+.+++.+.+.+.
T Consensus       152 -~~~~~lR~~l~~~~~  166 (223)
T d2ih2a1         152 -EDFALLREFLAREGK  166 (223)
T ss_dssp             -GGGHHHHHHHHHHSE
T ss_pred             -cchHHHHHHHHhcCC
Confidence             123566666666543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.1e-08  Score=79.60  Aligned_cols=107  Identities=21%  Similarity=0.245  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC---CCCcceEEEEcccCCC--CCCCCeeEEE
Q 024008          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~--~~~~~fD~v~  179 (274)
                      ..+++||-+|.|.|..+..+.+  ...+++++|+++.+++.|++..+..   ...++++++.+|....  ...++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            3458999999999999999988  3459999999999999999977431   1247899999999872  3456899999


Q ss_pred             ecccccccC-hh--HHHHHHHHHHhcccCCcEEEEEEc
Q 024008          180 DYTFFCAIE-PE--MRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~-~~--~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .-.. .... ..  ....+++.+.+.|+|||++++-..
T Consensus       157 ~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  193 (285)
T d2o07a1         157 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  193 (285)
T ss_dssp             EECC------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence            7532 1111 11  124678999999999999988653

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.63  E-value=4.4e-09  Score=84.26  Aligned_cols=94  Identities=12%  Similarity=0.129  Sum_probs=70.7

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCe
Q 024008           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~f  175 (274)
                      +..+++... .++.+|||||||+|.++..|++.+.++++||+++.+++.++++....   ++++++.+|+.+. .+...+
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~~~~~~   94 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhc---cchhhhhhhhhcccccccee
Confidence            445555443 45679999999999999999998899999999999988887766543   5799999999984 344566


Q ss_pred             eEEEecccccccChhHHHHH
Q 024008          176 DLIFDYTFFCAIEPEMRAAW  195 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~  195 (274)
                      +.|+++..++ +..+....+
T Consensus        95 ~~vv~NLPY~-Ist~il~~~  113 (245)
T d1yuba_          95 YKIVGNIPYH-LSTQIIKKV  113 (245)
T ss_dssp             EEEEEECCSS-SCHHHHHHH
T ss_pred             eeEeeeeehh-hhHHHHHHH
Confidence            7777776654 554443333

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=7.8e-07  Score=72.03  Aligned_cols=86  Identities=20%  Similarity=0.170  Sum_probs=68.7

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024008           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  177 (274)
                      ...++... .++..|||||+|+|.++..|++.+.+++++|+++..++..++.........+++++.+|+.....+. ++.
T Consensus        11 ~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~-~~~   89 (278)
T d1zq9a1          11 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF-FDT   89 (278)
T ss_dssp             HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC-CSE
T ss_pred             HHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh-hhh
Confidence            33444433 3568999999999999999999889999999999999999998877655578999999998855433 467


Q ss_pred             EEeccccc
Q 024008          178 IFDYTFFC  185 (274)
Q Consensus       178 v~~~~~~~  185 (274)
                      |+++..++
T Consensus        90 vV~NLPY~   97 (278)
T d1zq9a1          90 CVANLPYQ   97 (278)
T ss_dssp             EEEECCGG
T ss_pred             hhcchHHH
Confidence            77776655

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.50  E-value=2.6e-07  Score=79.90  Aligned_cols=150  Identities=15%  Similarity=0.117  Sum_probs=101.4

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC----C-----------CCeEEEEeCChHHHHHHHHHhhcCCCC
Q 024008           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----P-----------ERYVVGLEISDIAIKKAEELSSSLPNA  156 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~----~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~~  156 (274)
                      +|...+..++... ..++.+|+|..||+|.++..+.+    .           ...++|+|+++.....|+.+..-.+..
T Consensus       146 TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         146 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            4444444444433 33457999999999999987765    1           135999999999999999887766542


Q ss_pred             -cceEEEEcccCCCCCCCCeeEEEecccccccCh---------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCC
Q 024008          157 -KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP---------------EMRAAWAQKIKDFLKPDGELITLMFPISDHV  220 (274)
Q Consensus       157 -~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~---------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~  220 (274)
                       .+..+...|.....+..+||+|+++.++..-..               ..-..++.++.+.|++||++.++........
T Consensus       226 ~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~  305 (425)
T d2okca1         226 TDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFE  305 (425)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHC
T ss_pred             cccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhh
Confidence             346788889887777789999999999854211               1124689999999999999887764321100


Q ss_pred             CCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          221 GGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .     -....+++.+-+.+ .+..+..
T Consensus       306 ~-----~~~~~iR~~Ll~~~-~i~aIi~  327 (425)
T d2okca1         306 A-----GAGETIRKRLLQDF-NLHTILR  327 (425)
T ss_dssp             S-----THHHHHHHHHHHHE-EEEEEEE
T ss_pred             h-----hhHHHHHHHHHHhc-chhHhhc
Confidence            0     02345666666643 3444444

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=8.4e-07  Score=73.36  Aligned_cols=135  Identities=12%  Similarity=0.060  Sum_probs=98.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~  181 (274)
                      ..++.+|||+.||.|.=+..++.   ....+++.|.++..+...+.+....+. .++.+...|.... .....||.|+.-
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~~~~~fD~ILvD  192 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKILLD  192 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hccccccccccccccccccccEEEEc
Confidence            56778999999999998777765   456899999999999999999888776 3577777776653 335689999974


Q ss_pred             cccccc-------------ChhH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024008          182 TFFCAI-------------EPEM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       182 ~~~~~~-------------~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf  241 (274)
                      ......             ..+.       -.+++.+..+.|+|||.++.++.+....       -..+.+.++++..+|
T Consensus       193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e-------ENE~VV~~~L~~~~~  265 (313)
T d1ixka_         193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE-------ENEFVIQWALDNFDV  265 (313)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-------GTHHHHHHHHHHSSE
T ss_pred             cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH-------hHHHHHHHHHhcCCC
Confidence            332111             1111       1477889999999999998888665322       246777788888888


Q ss_pred             cEEEEee
Q 024008          242 QAISIVD  248 (274)
Q Consensus       242 ~~~~~~~  248 (274)
                      +++.+..
T Consensus       266 ~~~~~~~  272 (313)
T d1ixka_         266 ELLPLKY  272 (313)
T ss_dssp             EEECCCS
T ss_pred             EEeeccc
Confidence            7765543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.31  E-value=5.6e-07  Score=71.04  Aligned_cols=105  Identities=11%  Similarity=0.085  Sum_probs=68.7

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-
Q 024008           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-  169 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  169 (274)
                      .+.+++.  ..++.+|||||++.|..+..++.      ...+++++|+++........      ...+++++.+|..+. 
T Consensus        71 ~~~eli~--~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~  142 (232)
T d2bm8a1          71 VYHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLT  142 (232)
T ss_dssp             HHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSG
T ss_pred             HHHHHHH--HhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccHH
Confidence            3445555  34578999999999998876653      45799999998753322211      126799999998652 


Q ss_pred             ----CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          170 ----CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       170 ----~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                          .....+|+|+.-.. | ........+  .+...|++||++++.+
T Consensus       143 ~~~~l~~~~~dlIfID~~-H-~~~~v~~~~--~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         143 TFEHLREMAHPLIFIDNA-H-ANTFNIMKW--AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             GGGGGSSSCSSEEEEESS-C-SSHHHHHHH--HHHHTCCTTCEEEECS
T ss_pred             HHHHHHhcCCCEEEEcCC-c-chHHHHHHH--HHhcccCcCCEEEEEc
Confidence                22346788775433 2 222222222  3568999999999876

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=5.4e-06  Score=62.70  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=85.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCC
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~  173 (274)
                      ..++.+|||+||+.|.++..+.+   ....++++|+.+-         ..   .+++.++.+|+...         ....
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~---i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP---IVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC---CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc---cCCceEeecccccchhhhhhhhhccCc
Confidence            35668999999999999998876   4468999998662         11   14689999999761         2346


Q ss_pred             CeeEEEecccccccCh---------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          174 LFDLIFDYTFFCAIEP---------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~---------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      ++|+|++-.....-..         ......+.-+.++|++||.+++=.|...          ...++...++. =|+.+
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~----------~~~~l~~~l~~-~F~~V  156 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE----------GFDEYLREIRS-LFTKV  156 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST----------THHHHHHHHHH-HEEEE
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc----------cHHHHHHHHHh-hcCEE
Confidence            8999999876543211         2234667788899999999999776432          35567777776 36655


Q ss_pred             EEee
Q 024008          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      .+..
T Consensus       157 ~~~K  160 (180)
T d1ej0a_         157 KVRK  160 (180)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            5443

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.9e-07  Score=73.68  Aligned_cols=60  Identities=8%  Similarity=-0.022  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  169 (274)
                      .++..|||||||+|.++..|++.+.+++++|+++..++..++.....   ++++++.+|+...
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~   79 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTF   79 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGC
T ss_pred             CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhh
Confidence            45689999999999999999999999999999999999998755333   6899999999874

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=4.3e-06  Score=68.03  Aligned_cols=132  Identities=17%  Similarity=0.208  Sum_probs=93.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~  181 (274)
                      ..++.+|||+.+|.|.=+..++.  ....++++|+++..+...++++...+.. ++.....|...  ....+.||.|++-
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccccEEEEe
Confidence            56678999999999999988876  4468999999999999999999988764 34444444433  2345689999974


Q ss_pred             ccccc---c--ChhH---------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-C
Q 024008          182 TFFCA---I--EPEM---------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-G  240 (274)
Q Consensus       182 ~~~~~---~--~~~~---------------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G  240 (274)
                      .....   +  .++.               -..++.+..+.|+|||+++.++.+....       -+.+.+.++++.+ +
T Consensus       179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~-------ENE~vv~~~l~~~~~  251 (284)
T d1sqga2         179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-------ENSLQIKAFLQRTAD  251 (284)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-------GTHHHHHHHHHHCTT
T ss_pred             ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh-------hCHHHHHHHHHhCCC
Confidence            33211   1  1111               1578899999999999999888765422       2466677777764 4


Q ss_pred             CcEEE
Q 024008          241 FQAIS  245 (274)
Q Consensus       241 f~~~~  245 (274)
                      |+++.
T Consensus       252 ~~~~~  256 (284)
T d1sqga2         252 AELCE  256 (284)
T ss_dssp             CEECS
T ss_pred             cEEec
Confidence            65543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.8e-05  Score=64.57  Aligned_cols=134  Identities=9%  Similarity=0.045  Sum_probs=91.7

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-
Q 024008           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-  171 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  171 (274)
                      .....++.  ..++.+|||+.||.|.-+..++.   ....++++|+++..+...++++...+.. ++.+...|.....+ 
T Consensus        84 ~l~~~~L~--~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~  160 (293)
T d2b9ea1          84 CLPAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPS  160 (293)
T ss_dssp             GHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTT
T ss_pred             cccccccC--CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhccc
Confidence            33444443  56678999999999998877765   5669999999999999999999988864 68899998876432 


Q ss_pred             ---CCCeeEEEeccccccc------Ch------------hHH----HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc
Q 024008          172 ---TELFDLIFDYTFFCAI------EP------------EMR----AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK  226 (274)
Q Consensus       172 ---~~~fD~v~~~~~~~~~------~~------------~~~----~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~  226 (274)
                         .++||.|++-......      ++            ..+    ..++.... .++|||.++.++.+....       
T Consensus       161 ~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~-------  232 (293)
T d2b9ea1         161 DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE-------  232 (293)
T ss_dssp             CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG-------
T ss_pred             ccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh-------
Confidence               2579999975442211      00            001    23344444 479999988877655322       


Q ss_pred             cCHHHHHHHHhcCC
Q 024008          227 VSVSDYEEVLQPMG  240 (274)
Q Consensus       227 ~~~~~~~~~~~~~G  240 (274)
                      -+.+.+..+++.++
T Consensus       233 ENe~vV~~~L~~~~  246 (293)
T d2b9ea1         233 ENEDVVRDALQQNP  246 (293)
T ss_dssp             GTHHHHHHHHTTST
T ss_pred             HhHHHHHHHHHhCC
Confidence            24666667777654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.13  E-value=1.1e-05  Score=63.26  Aligned_cols=121  Identities=14%  Similarity=0.120  Sum_probs=74.3

Q ss_pred             ccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024008           94 PAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (274)
Q Consensus        94 ~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  170 (274)
                      ....+..+.+.. ..+.++|+|+|||.|.++..++..  ...+.|+++--..-+.. ......+ -+-+++...+-....
T Consensus        51 ~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P-~~~~~~~-~ni~~~~~~~dv~~l  128 (257)
T d2p41a1          51 GSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP-IPMSTYG-WNLVRLQSGVDVFFI  128 (257)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCSTT-GGGEEEECSCCTTTS
T ss_pred             HHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCC-ccccccc-cccccchhhhhHHhc
Confidence            344455555444 345579999999999999999874  35788888732210000 0001111 123555555444455


Q ss_pred             CCCCeeEEEecccccccCh----hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          171 PTELFDLIFDYTFFCAIEP----EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       171 ~~~~fD~v~~~~~~~~~~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                      +++..|+|+|-..-..-..    ...-.+++-+.++|+|||-+++=.+.+
T Consensus       129 ~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p  178 (257)
T d2p41a1         129 PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  178 (257)
T ss_dssp             CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence            6788999998765432111    122367788889999999998877654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=2.8e-06  Score=75.21  Aligned_cols=122  Identities=15%  Similarity=0.095  Sum_probs=81.9

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC----CC----------------CeEEEEeCChHHHHHHHHHhh
Q 024008           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----PE----------------RYVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~----~~----------------~~v~~iD~s~~~~~~a~~~~~  151 (274)
                      +|...+..++... ..++.+|+|..||+|.++..+.+    ..                ..++|+|+++.+...|+-+.-
T Consensus       148 TP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         148 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             cccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            3444444333333 34457999999999999876544    11                258999999999999998876


Q ss_pred             cCCCCc----ceEEEEcccCC--CCCCCCeeEEEecccccccCh------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024008          152 SLPNAK----FVSFLKADFFT--WCPTELFDLIFDYTFFCAIEP------------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       152 ~~~~~~----~v~~~~~d~~~--~~~~~~fD~v~~~~~~~~~~~------------~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      -.+...    ...+..++...  .....+||+|+++.++..-..            ..-..++.++.+.|++||++.++.
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  307 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence            554322    12344455443  223468999999998853210            112358999999999999988776


Q ss_pred             c
Q 024008          214 F  214 (274)
Q Consensus       214 ~  214 (274)
                      .
T Consensus       308 P  308 (524)
T d2ar0a1         308 P  308 (524)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=98.07  E-value=1.4e-05  Score=66.55  Aligned_cols=141  Identities=13%  Similarity=0.162  Sum_probs=99.7

Q ss_pred             CeEEEEcCCcchhHHHhhC------------------CCCeEEEEeCChHHHHHHHHHhhcCCCC-cc--eEEEEcccCC
Q 024008          110 GRALVPGCGTGYDVVAMAS------------------PERYVVGLEISDIAIKKAEELSSSLPNA-KF--VSFLKADFFT  168 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~------------------~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~--v~~~~~d~~~  168 (274)
                      .+|.|+||.+|.+++.+..                  +..+|..-|+...-.+..-+.++..... .+  +.-+.+.+..
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            5899999999999843332                  2347888898776666665555443221 12  3335677776


Q ss_pred             -CCCCCCeeEEEecccccccCh-------------------------------hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008          169 -WCPTELFDLIFDYTFFCAIEP-------------------------------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       169 -~~~~~~fD~v~~~~~~~~~~~-------------------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~  216 (274)
                       .+|+++.|++++..++|+++.                               .++..+|..=.+-|+|||++++..++.
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr  212 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence             889999999999999988641                               134567888888899999999988765


Q ss_pred             CCCC----------------------------------CCCCcccCHHHHHHHHhcCC-CcEEEEeecc
Q 024008          217 SDHV----------------------------------GGPPYKVSVSDYEEVLQPMG-FQAISIVDNK  250 (274)
Q Consensus       217 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~G-f~~~~~~~~~  250 (274)
                      .+..                                  .-|.|..+.+|+.+.++..| |++..++...
T Consensus       213 ~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~  281 (359)
T d1m6ex_         213 RSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE  281 (359)
T ss_dssp             SSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEE
T ss_pred             CCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeee
Confidence            4320                                  01245568999999999887 8888776544

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.06  E-value=2.6e-06  Score=71.94  Aligned_cols=101  Identities=15%  Similarity=-0.038  Sum_probs=75.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCc--------------ceEEEEcccCCC--
Q 024008          108 PKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAK--------------FVSFLKADFFTW--  169 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~--------------~v~~~~~d~~~~--  169 (274)
                      .+.+|||..||+|..++..+. .+. .|++.|+|+.+++.+++|+..++..+              .+.+...|+...  
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            467999999999999986554 444 89999999999999999997765422              355566665442  


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       170 ~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .....||+|..-. |..     ...+++...+.++.||.+.++.-
T Consensus       125 ~~~~~fDvIDiDP-fGs-----~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP-FGS-----PMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC-SSC-----CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhcCcCCcccCCC-CCC-----cHHHHHHHHHHhccCCEEEEEec
Confidence            2346799888543 331     13578889999999999998763

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.57  E-value=3.5e-05  Score=60.89  Aligned_cols=77  Identities=16%  Similarity=0.050  Sum_probs=60.7

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC--------CCcceEEEEcccCCCC--CCCCeeEEE
Q 024008          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP--------NAKFVSFLKADFFTWC--PTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~--------~~~~v~~~~~d~~~~~--~~~~fD~v~  179 (274)
                      .+|||+-||.|..+..++..|++|+++|-++......++.+....        ...+++++.+|..+..  ....||+|+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY  169 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence            489999999999999999999999999999987777665543221        1247999999987632  346799999


Q ss_pred             ecccccc
Q 024008          180 DYTFFCA  186 (274)
Q Consensus       180 ~~~~~~~  186 (274)
                      .-..|..
T Consensus       170 lDPMFp~  176 (250)
T d2oyra1         170 LDPMFPH  176 (250)
T ss_dssp             ECCCCCC
T ss_pred             ECCCCcc
Confidence            8877754

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=97.36  E-value=0.012  Score=47.27  Aligned_cols=137  Identities=6%  Similarity=-0.047  Sum_probs=93.9

Q ss_pred             CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC---------CCCCCeeE
Q 024008          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW---------CPTELFDL  177 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---------~~~~~fD~  177 (274)
                      ..|+.+|||-=.-...+.. .+.+++=+|. |++++.-++.+...+.  ..+..++..|+...         ...+.--+
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl  169 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  169 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence            5677799887665555532 4567887885 8888877777765443  34567788888651         12244567


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------CC----C--CCcccCHHHH
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------VG----G--PPYKVSVSDY  232 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------------~~----~--~~~~~~~~~~  232 (274)
                      +++-++++|++++....+++.+.+...||+.+++...+....                   ..    .  ..+..+..++
T Consensus       170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (297)
T d2uyoa1         170 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAVV  249 (297)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCCH
T ss_pred             EEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCchhhH
Confidence            777889999999999999999999999999988754332211                   00    0  0112345678


Q ss_pred             HHHHhcCCCcEEEEe
Q 024008          233 EEVLQPMGFQAISIV  247 (274)
Q Consensus       233 ~~~~~~~Gf~~~~~~  247 (274)
                      .++|..+||++....
T Consensus       250 ~~~l~~~Gw~~~~~~  264 (297)
T d2uyoa1         250 ADWLNRHGWRATAQS  264 (297)
T ss_dssp             HHHHTTTTEEEEEEE
T ss_pred             HHHHHhCCCEEEEec
Confidence            899999999866543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.32  E-value=0.00052  Score=50.69  Aligned_cols=96  Identities=17%  Similarity=0.088  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----------CCCC
Q 024008          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----------CPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~~  173 (274)
                      ..++.+||-+||| .|..+..+++ .|++|+++|.+++.++.|++.-.      ...+...+....          ....
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga------~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA------DVTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC------SEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC------cEEEeccccccccchhhhhhhccccc
Confidence            4567899999988 4555666666 78999999999999999987542      122222111110          1135


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      .+|+|+..-.     .   ...++...++++++|.+++....
T Consensus        98 g~D~vid~~g-----~---~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          98 LPNVTIDCSG-----N---EKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             CCceeeecCC-----C---hHHHHHHHHHHhcCCceEEEecC
Confidence            6899984321     1   24567888999999999886643

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.30  E-value=0.00024  Score=56.03  Aligned_cols=59  Identities=15%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhh
Q 024008           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~  151 (274)
                      .|...+..++.....++..|||.-||+|..+.+..+.|.+.+|+|++++.++.|++++.
T Consensus       197 kP~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            45667778887777888999999999999999999999999999999999999999874

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.24  E-value=0.00037  Score=56.69  Aligned_cols=64  Identities=9%  Similarity=-0.044  Sum_probs=56.8

Q ss_pred             cCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008           90 DIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      ....|...+.+++.....+++.|||.-||+|..+.+....|.+.+|+|++++.++.|++++...
T Consensus       232 pt~kP~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         232 PARFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             SSCCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCcCchHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            3456678888888877788899999999999999999999999999999999999999988654

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.23  E-value=0.00025  Score=55.85  Aligned_cols=106  Identities=15%  Similarity=0.081  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC------CC------------------------------------CeEEEEeCChHHHHH
Q 024008          108 PKGRALVPGCGTGYDVVAMAS------PE------------------------------------RYVVGLEISDIAIKK  145 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~------~~------------------------------------~~v~~iD~s~~~~~~  145 (274)
                      .+..++|.-||+|.+.+..+.      +|                                    ..++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            345799999999999876553      11                                    246788999999988


Q ss_pred             H---HHHhhcCCCCcceEEEEcccCCCC------CCCCeeEEEecccccc-cC------hhHHHHHHHHHHhcccCCcEE
Q 024008          146 A---EELSSSLPNAKFVSFLKADFFTWC------PTELFDLIFDYTFFCA-IE------PEMRAAWAQKIKDFLKPDGEL  209 (274)
Q Consensus       146 a---~~~~~~~~~~~~v~~~~~d~~~~~------~~~~fD~v~~~~~~~~-~~------~~~~~~~l~~l~~~L~~gG~l  209 (274)
                      |   ++|+...++...+.+...|+++..      ++...++|++|..+.. +.      .+....+...+.+.+.....+
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~  209 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  209 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEE
Confidence            8   468888888888999999998732      3466899999988765 31      234667778888888766666


Q ss_pred             EEEE
Q 024008          210 ITLM  213 (274)
Q Consensus       210 ~~~~  213 (274)
                      +++.
T Consensus       210 ~it~  213 (249)
T d1o9ga_         210 AVTD  213 (249)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            6654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.00023  Score=52.65  Aligned_cols=96  Identities=13%  Similarity=0.085  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC--CCCCCCeeEEEe
Q 024008          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT--WCPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~--~~~~~~fD~v~~  180 (274)
                      ..++.+||-+|+| .|..+..+++ .|++++++|.+++.++.+++.-..       .++.. +-.+  ....+.+|.|+.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~-------~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-------HYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-------EEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc-------EEeeccchHHHHHhhhcccceEEE
Confidence            4567899999998 5666677766 789999999999999999876311       12221 1111  122357998886


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      .-.-.. +     ..+....++++++|++++...
T Consensus        98 ~~~~~~-~-----~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          98 CASSLT-D-----IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             CCSCST-T-----CCTTTGGGGEEEEEEEEECCC
T ss_pred             EecCCc-c-----chHHHHHHHhhccceEEEecc
Confidence            422111 0     013457889999999988653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.88  E-value=0.00029  Score=52.49  Aligned_cols=94  Identities=15%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCe
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~----~~~~~~f  175 (274)
                      ..++.+||=+|||. |..+..+++ .|+ +|+++|.++..++.+++.-.       ..++..   +..+    ......+
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-------~~~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-------TDILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-------SEEECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-------cccccccchhHHHHHHHHhhccCc
Confidence            45667899999986 777777777 676 79999999999999987531       112211   1111    1223569


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+|+..-.-        ...++...++++|+|.+++...
T Consensus        98 D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          98 DRVIMAGGG--------SETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             EEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEccCC--------HHHHHHHHHHHhcCCEEEEEee
Confidence            999853221        1245778899999999988654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.84  E-value=0.00071  Score=53.90  Aligned_cols=62  Identities=16%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      ..|...+..++.....++..|||.-||+|..+.+....|.+++|+|+++..++.|++++...
T Consensus       191 ~kP~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         191 QKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             ccchhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            34566678888777778899999999999999999999999999999999999999988653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.00036  Score=52.30  Aligned_cols=96  Identities=18%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC-------CCCCCCCee
Q 024008          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF-------TWCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-------~~~~~~~fD  176 (274)
                      .++.+||-+|||. |..+..+++ .|+ +|+++|.+++.++.+++.-...    -++....|..       +......+|
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~----vi~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL----TLNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE----EEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE----EEeccccchHHHHHHHHHhhCCCCce
Confidence            4568999999874 566667766 787 8999999999999997653110    0111111111       112234699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+..-  ..      ...++...+++++||++++...
T Consensus       103 vvid~v--G~------~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         103 FILEAT--GD------SRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             EEEECS--SC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             EEeecC--Cc------hhHHHHHHHHhcCCCEEEEEee
Confidence            998432  11      1245778899999999987654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.0015  Score=53.52  Aligned_cols=57  Identities=18%  Similarity=0.046  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .+..|||||+|.|.++..|.+.  ..+++++|+++..++..++....    ++++++.+|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~----~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG----SPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT----SSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC----CCcEEEeCchhh
Confidence            3568999999999999999874  34899999999999999887642    468999999875

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0011  Score=54.34  Aligned_cols=132  Identities=16%  Similarity=0.067  Sum_probs=81.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEec
Q 024008          109 KGRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~~  181 (274)
                      +.+|+|+-||.|.+...+...|.   .+.++|+++.+++..+.+.+      ...++.+|+.+...    ...+|++++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dll~gg   75 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccEEEee
Confidence            56899999999999988877675   36789999999999888873      34566777765321    2368999988


Q ss_pred             ccccccCh--------hHHHHHHHHHHhcc-----cCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008          182 TFFCAIEP--------EMRAAWAQKIKDFL-----KPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~--------~~~~~~l~~l~~~L-----~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  248 (274)
                      .....++.        +.+..++-.+.+++     +|  .+++.+......     .....+.+.+.|+..||.+....-
T Consensus        76 pPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kP--k~~i~ENV~~l~-----~~~~~~~i~~~l~~~GY~v~~~vl  148 (343)
T d1g55a_          76 PPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGFE-----VSSTRDLLIQTIENCGFQYQEFLL  148 (343)
T ss_dssp             CC------------------CHHHHHHHHGGGCSSCC--SEEEEEEETTGG-----GSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccccccccccccccccccccccchhhhhHhhhcCCC--ceeeeeccCCcc-----cchhhHHHHhhhhccccccceeee
Confidence            77655532        12223333344443     34  344545322111     011357888899999998866544


Q ss_pred             ccccc
Q 024008          249 NKLAI  253 (274)
Q Consensus       249 ~~~~~  253 (274)
                      ....+
T Consensus       149 na~dy  153 (343)
T d1g55a_         149 SPTSL  153 (343)
T ss_dssp             CGGGG
T ss_pred             ecccc
Confidence            44433

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.64  E-value=0.00046  Score=52.41  Aligned_cols=101  Identities=16%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEE----cccCC----CCCCCC
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK----ADFFT----WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~----~d~~~----~~~~~~  174 (274)
                      ..++.+||-+|||. |..+..+++ .++ +|+++|.+++.++.|++.-.        +...    .|+.+    ......
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga--------~~~~~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF--------EIADLSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC--------EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc--------cEEEeCCCcCHHHHHHHHhCCCC
Confidence            45678999999998 555566665 555 89999999999999987631        1111    11111    112346


Q ss_pred             eeEEEecccccc-------cChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCA-------IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~-------~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+++..--...       +........++...++++|||.+++.-.
T Consensus        95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            899985422110       1111123578999999999999988754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.59  E-value=0.029  Score=38.93  Aligned_cols=104  Identities=15%  Similarity=0.146  Sum_probs=67.5

Q ss_pred             eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024008          111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~  181 (274)
                      +|+=+|+  |..+..+++    .|..|+.+|.+++.++.+++..       .+.++.+|..+.     ..-..+|.+++.
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            5666766  666655554    7899999999999998877653       267889999871     233568888853


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                           .+.+....++..+.+.+.+...+ ...              ...+..+.+++.|-..
T Consensus        73 -----t~~d~~N~~~~~~~k~~~~~~iI-~~~--------------~~~~~~~~l~~~G~d~  114 (132)
T d1lssa_          73 -----TGKEEVNLMSSLLAKSYGINKTI-ARI--------------SEIEYKDVFERLGVDV  114 (132)
T ss_dssp             -----CSCHHHHHHHHHHHHHTTCCCEE-EEC--------------SSTTHHHHHHHTTCSE
T ss_pred             -----CCcHHHHHHHHHHHHHcCCceEE-EEe--------------cCHHHHHHHHHCCCCE
Confidence                 22233344555666677777443 322              2334566788888754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0013  Score=48.63  Aligned_cols=94  Identities=15%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~  179 (274)
                      .++.+||-.|+  |.|..+..+++ .|+++++++-+++..+.+++.-    -..-++....|+.+    ......+|+|+
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~G----a~~vi~~~~~~~~~~i~~~t~~~g~d~v~  102 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNG----AHEVFNHREVNYIDKIKKYVGEKGIDIII  102 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT----CSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccccC----cccccccccccHHHHhhhhhccCCceEEe
Confidence            45689999996  56677777777 8899999998998888887542    11111111112211    12346799998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ....         ...++...++++|+|.++.+.
T Consensus       103 d~~g---------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2         103 EMLA---------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             ESCH---------HHHHHHHHHHEEEEEEEEECC
T ss_pred             eccc---------HHHHHHHHhccCCCCEEEEEe
Confidence            5321         235678889999999998763

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.52  E-value=0.0075  Score=48.94  Aligned_cols=135  Identities=15%  Similarity=-0.028  Sum_probs=85.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~  183 (274)
                      ..+.+|||+-||.|.+...|.+.|++ +.++|+++.+++..+.|.+..        ..+|+.+...  -..+|+++....
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~~~~~Dll~ggpP   80 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKTIPDHDILCAGFP   80 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGGSCCCSEEEEECC
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhhcceeeeeecccc
Confidence            34689999999999999999889985 566999999999999998543        2467766322  246899998766


Q ss_pred             ccccCh------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008          184 FCAIEP------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       184 ~~~~~~------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~  251 (274)
                      ...++.            ..... +-++.+.++|.=  ++.+....-.  ........+.+.+.|++.||.+....-...
T Consensus        81 Cq~fS~ag~~~g~~d~r~~l~~~-~~~~i~~~kP~~--~~lENV~~~~--~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~  155 (327)
T d2c7pa1          81 CQAFSISGKQKGFEDSRGTLFFD-IARIVREKKPKV--VFMENVKNFA--SHDNGNTLEVVKNTMNELDYSFHAKVLNAL  155 (327)
T ss_dssp             CTTTCTTSCCCGGGSTTSCHHHH-HHHHHHHHCCSE--EEEEEEGGGG--TGGGGHHHHHHHHHHHHTTBCCEEEEEEGG
T ss_pred             cchhhhhhhhcCCcccchhHHHH-HHHHHhccCCcE--Eecccchhhh--hhccchhhHHhhhHHHhcCCcceeeEecHH
Confidence            544421            12222 334555677753  3333211100  001112357788899999998776555444


Q ss_pred             ccC
Q 024008          252 AIG  254 (274)
Q Consensus       252 ~~~  254 (274)
                      .++
T Consensus       156 ~~G  158 (327)
T d2c7pa1         156 DYG  158 (327)
T ss_dssp             GGT
T ss_pred             HcC
Confidence            443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.46  E-value=0.0097  Score=47.96  Aligned_cols=134  Identities=14%  Similarity=0.033  Sum_probs=83.5

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccccc
Q 024008          110 GRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCA  186 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~  186 (274)
                      ++|||+-||.|.+...+.+.|++ +.++|+++.+.+..+.|.+       ..++.+|+.+...  -...|++++......
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~~~~~~dll~~g~PCq~   73 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGGPPCQS   73 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGGGSCCCSEEEECCCCTT
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHhHcccccEEeecccccc
Confidence            47999999999999988888885 5599999999988888863       3467789887432  246899998766554


Q ss_pred             cCh--------hHHHHHH---HHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024008          187 IEP--------EMRAAWA---QKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       187 ~~~--------~~~~~~l---~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~  254 (274)
                      ++.        +.+..++   -++.+.++|.  +++.+....-.  ..........+.+.+...||.+....-....++
T Consensus        74 fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~~~~--~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~G  148 (324)
T d1dcta_          74 WSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMM--AQRHNKAVQEFIQEFDNAGYDVHIILLNANDYG  148 (324)
T ss_dssp             TSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEGGGG--SGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGT
T ss_pred             cccccccccccccccchHHHHHHHHHhhCCc--eeecccccccc--ccccchhhHHHHhHHhhCCCccceeeeeccccc
Confidence            421        2222222   3355566774  33333211100  001112345666777777887766555444443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.024  Score=41.14  Aligned_cols=94  Identities=20%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEec
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~  181 (274)
                      ..++.+||=+|||. |..+.++++ .|++++++|.+++..+.+++.-.       ..++..+-..  ....+.+|+++..
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa-------d~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA-------DEVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-------SEEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC-------cEEEECchhhHHHHhcCCCceeeee
Confidence            45668999999864 455566666 88999999999988888876532       1122211111  2223579998854


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      -.-.        ..+....+.++++|++++...
T Consensus       101 ~g~~--------~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         101 VAAP--------HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             CSSC--------CCHHHHHTTEEEEEEEEECCC
T ss_pred             eecc--------hhHHHHHHHHhcCCEEEEecc
Confidence            2211        124677889999999988653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.75  E-value=0.0092  Score=43.96  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccC-C----CCCCCC
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFF-T----WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~-~----~~~~~~  174 (274)
                      ..++.+||=+|||. |..+..+++ .|+ .|+++|.+++.++.|++.-.       ..++..   |-. .    ....+.
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-------TDCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-------SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC-------CcccCCccchhhhhhhHhhhhcCC
Confidence            34568999999998 777777777 777 79999999999999887632       112211   110 0    112357


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~  214 (274)
                      +|+|+-.--        ....++...+++++| |.+++.-.
T Consensus        99 ~d~vie~~G--------~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          99 VDYSLDCAG--------TAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             BSEEEESSC--------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CcEEEEecc--------cchHHHHHHHHhhcCCeEEEecCC
Confidence            999984211        134578899999996 99888654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.72  E-value=0.078  Score=38.28  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=61.6

Q ss_pred             CCCCCeEEEEcCC--cchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCC
Q 024008          106 ALPKGRALVPGCG--TGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G--~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~  174 (274)
                      ..++.+||=+||+  .|..+..+++ .+ ..|+++|.+++.++.+++.-.       ..++..+-.+       ......
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA-------DYVINASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC-------ceeeccCCcCHHHHHHHHhhccc
Confidence            4456799999973  4555555555 55 599999999999999987631       1222222211       122456


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ||+|+....-        ...++...++++|||.+++...
T Consensus        98 ~d~vid~~g~--------~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          98 VDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             EEEEEESCCC--------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             chhhhccccc--------chHHHhhhhhcccCCEEEEecc
Confidence            9999853221        2345778899999999988754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.70  E-value=0.034  Score=40.18  Aligned_cols=92  Identities=15%  Similarity=0.092  Sum_probs=57.1

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeE
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD~  177 (274)
                      ..++.+||=+|+|. |..+..+++ .|.+|+++|.+++.++.+++.-.       ..++..+-.+.      ...+.++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA-------SLTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc-------cccccccchhHHHHHHHhhcCCccc
Confidence            45678898899875 344455555 78999999999999999876531       12222221110      11123344


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      |++...         ...++...++|+++|++++..
T Consensus        98 i~~~~~---------~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          98 LVTAVS---------NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EECCSC---------HHHHHHHHTTEEEEEEEEECC
T ss_pred             cccccc---------chHHHHHHHHhcCCcEEEEEE
Confidence            442221         234677889999999998864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.64  E-value=0.036  Score=40.03  Aligned_cols=87  Identities=17%  Similarity=0.155  Sum_probs=57.3

Q ss_pred             CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      ++|.=||+|.  +.++..|.+.|.+|+++|.+++.++.+++.-.       +.....+. +.  -...|+|+..     .
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~-------~~~~~~~~-~~--~~~~DiIila-----v   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-------VDEAGQDL-SL--LQTAKIIFLC-----T   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-------CSEEESCG-GG--GTTCSEEEEC-----S
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc-------cceeeeec-cc--cccccccccc-----C
Confidence            3567787762  23445666689999999999998888766421       11112222 11  2457988842     3


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEE
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      ++.....+++++...++++.+++-
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             cHhhhhhhhhhhhhhcccccceee
Confidence            556778899999999998887654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.60  E-value=0.14  Score=39.85  Aligned_cols=60  Identities=20%  Similarity=0.115  Sum_probs=46.9

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=.|++.|.   .+..|++.|++|+.++.+++.++.+.+.....+  .++.++.+|+.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~   66 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLS   66 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCC
Confidence            567889999998763   345666799999999999999888888777665  457778888753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.11  Score=40.37  Aligned_cols=62  Identities=19%  Similarity=0.115  Sum_probs=49.2

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++.+|=.|++.|.-   +..|++.|++|+.++.+++.++.+.+.+...+...++.++.+|+.+
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~   72 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN   72 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC
Confidence            4577899999888743   4556669999999999999998888877766555578888999875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.073  Score=37.78  Aligned_cols=110  Identities=11%  Similarity=-0.026  Sum_probs=67.6

Q ss_pred             CeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024008          110 GRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~  180 (274)
                      .+|+=+|+  |..+..+++    .+..++.+|.+++......+.....    .+.++.+|..+.     ..-+..|.|++
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHhccccCCEEEE
Confidence            35666666  455554444    7889999999987554444433332    488999999872     12346788875


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                      ..     +.+.....+-...+.+.|...++...              ...+..+.++.+|-..+
T Consensus        78 ~~-----~~d~~n~~~~~~~r~~~~~~~iia~~--------------~~~~~~~~l~~~Gad~v  122 (153)
T d1id1a_          78 LS-----DNDADNAFVVLSAKDMSSDVKTVLAV--------------SDSKNLNKIKMVHPDII  122 (153)
T ss_dssp             CS-----SCHHHHHHHHHHHHHHTSSSCEEEEC--------------SSGGGHHHHHTTCCSEE
T ss_pred             cc-----ccHHHHHHHHHHHHHhCCCCceEEEE--------------cCHHHHHHHHHCCCCEE
Confidence            32     22333444455666677887777765              23455566777776543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.088  Score=38.06  Aligned_cols=95  Identities=19%  Similarity=0.061  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCC
Q 024008          106 ALPKGRALVPGCGTGYDV-VAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~  173 (274)
                      ..++.+||=+|||..... ..+++ .|+ +|+++|.++..++.|++.-..       .++..+-...         ....
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-------LVLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-------ccccccccccccccccccccCCC
Confidence            456689999999765443 44444 777 899999999999999875311       1111111110         1124


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      .+|+|+..-.     .   ...++...+++++||++++....
T Consensus        97 g~Dvvid~~G-----~---~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          97 KPEVTIECTG-----A---EASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             CceEEEeccC-----C---chhHHHHHHHhcCCCEEEEEecC
Confidence            6899884321     1   24578899999999999887643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.16  E-value=0.027  Score=39.07  Aligned_cols=104  Identities=13%  Similarity=0.028  Sum_probs=61.5

Q ss_pred             EEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecc
Q 024008          112 ALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT  182 (274)
Q Consensus       112 vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~~  182 (274)
                      ++=+|+  |..+..+++    .|..|+++|.+++.++.++...        ...+.+|..+..     .-...|.+++. 
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~--------~~~~~gd~~~~~~l~~a~i~~a~~vi~~-   71 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA--------THAVIANATEENELLSLGIRNFEYVIVA-   71 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC--------SEEEECCTTCTTHHHHHTGGGCSEEEEC-
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC--------CcceeeecccchhhhccCCccccEEEEE-
Confidence            444555  555555544    8999999999999888774322        456778887621     12357776642 


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~  244 (274)
                          ++.+.....+-.+.+.+.+...++...              ...+..+.|+..|-..+
T Consensus        72 ----~~~~~~~~~~~~~~~~~~~~~~iiar~--------------~~~~~~~~l~~~Gad~v  115 (134)
T d2hmva1          72 ----IGANIQASTLTTLLLKELDIPNIWVKA--------------QNYYHHKVLEKIGADRI  115 (134)
T ss_dssp             ----CCSCHHHHHHHHHHHHHTTCSEEEEEC--------------CSHHHHHHHHHHTCSEE
T ss_pred             ----cCchHHhHHHHHHHHHHcCCCcEEeec--------------ccHhHHHHHHHCCCCEE
Confidence                222222233334444455566666554              34456777888887644

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.10  E-value=0.056  Score=44.51  Aligned_cols=44  Identities=20%  Similarity=0.173  Sum_probs=34.9

Q ss_pred             CeEEEEcCCcchhHHHhhC---------CCCeEEEEeCChHHHHHHHHHhhcC
Q 024008          110 GRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~---------~~~~v~~iD~s~~~~~~a~~~~~~~  153 (274)
                      ..|+|+|+|+|.++..+.+         ....++.+|.|+...+.-++++...
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~  133 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI  133 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC
T ss_pred             ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc
Confidence            5899999999999876654         2347999999999888877776543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.0088  Score=44.04  Aligned_cols=94  Identities=12%  Similarity=0.124  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCC--cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008          107 LPKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G--~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~  179 (274)
                      .++.+||=.|+|  .|..+..+++ .|++|++++.+++..+.+++.-..    .-++....|+.+    .-....+|+|+
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~----~vi~~~~~d~~~~v~~~t~g~g~d~v~  102 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW----QVINYREEDLVERLKEITGGKKVRVVY  102 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe----EEEECCCCCHHHHHHHHhCCCCeEEEE
Confidence            456788888665  5667777877 789999999999999998865311    111111122221    12346799988


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ....-         ..+.....+++++|.+++..
T Consensus       103 d~~g~---------~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2         103 DSVGR---------DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             ECSCG---------GGHHHHHHTEEEEEEEEECC
T ss_pred             eCccH---------HHHHHHHHHHhcCCeeeecc
Confidence            54321         13467889999999887654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.86  E-value=0.052  Score=37.39  Aligned_cols=100  Identities=13%  Similarity=0.019  Sum_probs=65.1

Q ss_pred             CCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEecccccccCh
Q 024008          117 CGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYTFFCAIEP  189 (274)
Q Consensus       117 ~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~~~~~~~~~  189 (274)
                      ||.|..+..+++  .+..++.+|.++...+.++..        .+.++.+|..+.     ..-++.+.+++.     .++
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~-----~~~   72 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKANVRGARAVIVN-----LES   72 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHTTCTTCSEEEEC-----CSS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHhhhhcCcEEEEe-----ccc
Confidence            456777777776  567899999999988766432        378899998871     223567777742     223


Q ss_pred             hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008          190 EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       190 ~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~  243 (274)
                      +.....+-...+.+.|...++...              ...+..+.++.+|-..
T Consensus        73 d~~n~~~~~~~r~~~~~~~iia~~--------------~~~~~~~~l~~~G~d~  112 (129)
T d2fy8a1          73 DSETIHCILGIRKIDESVRIIAEA--------------ERYENIEQLRMAGADQ  112 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSCEEEEC--------------SSGGGHHHHHHHHCSE
T ss_pred             hhhhHHHHHHHHHHCCCceEEEEE--------------cCHHHHHHHHHCCCCE
Confidence            344445566667788888777765              2334445566667554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.75  E-value=0.35  Score=37.41  Aligned_cols=60  Identities=18%  Similarity=0.165  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~   65 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTS   65 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            467888888887763   345666799999999999999998888877665  468888889865

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.59  E-value=0.5  Score=36.60  Aligned_cols=59  Identities=22%  Similarity=0.188  Sum_probs=45.4

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++.+|=-|++.|.-   +..|++.|++|+.+|.+++.++.+.+.+...   .++.++.+|+.+
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~   65 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTK   65 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCC
Confidence            5678889999887732   3455669999999999999888887776544   357788888865

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.57  E-value=0.043  Score=40.26  Aligned_cols=94  Identities=13%  Similarity=0.022  Sum_probs=61.3

Q ss_pred             CCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024008          108 PKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~  181 (274)
                      ++.+||=-|+  |.|..+.++++ .|++|+++--+++-.+.+++.-...    -++. ..+..+   ....+.||+|+..
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~----vi~~-~~~~~~~~~~~~~~gvD~vid~  105 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE----VLAR-EDVMAERIRPLDKQRWAAAVDP  105 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE----EEEC-C---------CCSCCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce----eeec-chhHHHHHHHhhccCcCEEEEc
Confidence            3578998885  55567778877 8999999999888888887653221    1111 111111   2234689999854


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                      -.-         ..+....++|++||+++.+...
T Consensus       106 vgg---------~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         106 VGG---------RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             STT---------TTHHHHHHTEEEEEEEEECSCC
T ss_pred             CCc---------hhHHHHHHHhCCCceEEEeecc
Confidence            221         2357889999999999887654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.45  E-value=0.51  Score=36.20  Aligned_cols=60  Identities=18%  Similarity=0.083  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      +.++.+|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~   70 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSK   70 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            456778888887762   245666689999999999999988888877665  468888999875

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.25  Score=37.84  Aligned_cols=73  Identities=21%  Similarity=0.247  Sum_probs=54.3

Q ss_pred             CCCCCeEEEEcCCcc---hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCe
Q 024008          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G---~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~f  175 (274)
                      .+.++++|=-|++.|   ..+..|++.|++|+.+|.+++.++...+..      ..+..+..|+.+.       ..-++.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~i   77 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPV   77 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence            456889999998877   334566679999999999998887776554      2467888898761       233689


Q ss_pred             eEEEecccc
Q 024008          176 DLIFDYTFF  184 (274)
Q Consensus       176 D~v~~~~~~  184 (274)
                      |+++.+...
T Consensus        78 DilVnnAg~   86 (244)
T d1pr9a_          78 DLLVNNAAV   86 (244)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEecccc
Confidence            999976543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.36  E-value=0.1  Score=38.09  Aligned_cols=92  Identities=18%  Similarity=0.174  Sum_probs=61.5

Q ss_pred             CCCCeEEEEcCCc--chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc--CC----CCCCCCeeE
Q 024008          107 LPKGRALVPGCGT--GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF--FT----WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~--G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~----~~~~~~fD~  177 (274)
                      .++.+||=.|++.  |..+.++++ .|++|+++.-+++..+.+++.-..      ..+...|.  .+    ......+|+
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~------~vi~~~~~~~~~~~~~~~~~~Gvd~  101 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD------AAFNYKTVNSLEEALKKASPDGYDC  101 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------EEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh------hhcccccccHHHHHHHHhhcCCCce
Confidence            4568999877754  566677777 899999999999888888765311      11211111  11    123457999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      |+..     ..    ...++...++|+++|.++.+-
T Consensus       102 v~D~-----vG----~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2         102 YFDN-----VG----GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             EEES-----SC----HHHHHHHGGGEEEEEEEEECC
T ss_pred             eEEe-----cC----chhhhhhhhhccCCCeEEeec
Confidence            9842     21    235688999999999998764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.28  E-value=0.0078  Score=44.19  Aligned_cols=92  Identities=16%  Similarity=0.104  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec
Q 024008          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~  181 (274)
                      ..++.+||=.|+  |.|..+..+++ .|+++++++-+++..+.+++.-.     + ..+-..+... ......+|+|+..
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa-----~-~~i~~~~~~~~~~~~~g~D~v~d~   98 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA-----E-EAATYAEVPERAKAWGGLDLVLEV   98 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC-----S-EEEEGGGHHHHHHHTTSEEEEEEC
T ss_pred             CCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccccc-----c-eeeehhhhhhhhhccccccccccc
Confidence            346678998884  34667777777 78999999999988888876421     1 1111111111 1123579999852


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                        ..    +    .+....++|+++|.++.+.
T Consensus        99 --~G----~----~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          99 --RG----K----EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             --SC----T----THHHHHTTEEEEEEEEEC-
T ss_pred             --cc----h----hHHHHHHHHhcCCcEEEEe
Confidence              12    1    1466789999999988754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.12  E-value=0.12  Score=38.02  Aligned_cols=92  Identities=12%  Similarity=0.020  Sum_probs=56.2

Q ss_pred             CeEEEEc--CCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecc
Q 024008          110 GRALVPG--CGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG--~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~  182 (274)
                      .+||=.|  .|.|..+.++++ .|+ .|+++.-+++............   .-++....|+.+   ...+..+|+|+..-
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad---~vi~~~~~~~~~~~~~~~~~GvDvv~D~v  108 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD---AAVNYKTGNVAEQLREACPGGVDVYFDNV  108 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS---EEEETTSSCHHHHHHHHCTTCEEEEEESS
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce---EEeeccchhHHHHHHHHhccCceEEEecC
Confidence            5788866  678899999998 777 5777777776555544333111   111111112221   11235799998432


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                           -    ...++...++|+++|+++.+-
T Consensus       109 -----G----g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         109 -----G----GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             -----C----HHHHHHHHTTEEEEEEEEEC-
T ss_pred             -----C----chhHHHHhhhccccccEEEec
Confidence                 1    235688999999999998754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.02  E-value=0.16  Score=36.21  Aligned_cols=93  Identities=18%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCC---CCCCCCeeE
Q 024008          106 ALPKGRALVPGCGTGYDV-VAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFT---WCPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~---~~~~~~fD~  177 (274)
                      ..++.+||=.|||.-..+ ..+++ .|++|+++|.+++.++.+++.-..       .++.   .|...   ....+.+|+
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~-------~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD-------LVVNPLKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS-------EEECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc-------eecccccchhhhhcccccCCCceE
Confidence            456789999998775443 34444 788999999999999988774311       1111   11111   011233444


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |++.     ..    ...+....++++++|.+++...
T Consensus        98 v~~~-----~~----~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          98 VVTA-----VS----KPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             EESS-----CC----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             Eeec-----CC----HHHHHHHHHHhccCCceEeccc
Confidence            4422     11    2356889999999999988653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.01  E-value=0.086  Score=38.30  Aligned_cols=94  Identities=12%  Similarity=0.089  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcCCcch-hHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC------CCCCCCee
Q 024008          106 ALPKGRALVPGCGTGY-DVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~-~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~fD  176 (274)
                      ..++.+||=+|||.-. .+..+++ .|. .++++|.++..++.+++.-.       ..++..+-.+      ...++.||
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-------~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-------eEEEeCCCcCHHHHHHHHcCCCCc
Confidence            4456799999997543 3445555 455 77889999999999987631       2233222211      11235799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      +|+..-.        ....++...++++|+|.+++...
T Consensus        99 ~vid~~G--------~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          99 FALESTG--------SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEEECSC--------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEEcCC--------cHHHHHHHHhcccCceEEEEEee
Confidence            9984311        12456788999999999987653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.01  E-value=0.13  Score=36.94  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=56.3

Q ss_pred             eEEEEcCCc-ch-hHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008          111 RALVPGCGT-GY-DVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       111 ~vLDiG~G~-G~-~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  186 (274)
                      +|+=||||. |. ++..|.+.+.  +|+++|.+++.++.+++.-.       +.....+... ......|+|+..     
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-------~~~~~~~~~~-~~~~~~dlIila-----   69 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-------IDEGTTSIAK-VEDFSPDFVMLS-----   69 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-------CSEEESCGGG-GGGTCCSEEEEC-----
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-------chhhhhhhhh-hhcccccccccc-----
Confidence            577898875 32 2344555554  89999999999999887631       2222222221 112356888843     


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEE
Q 024008          187 IEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       187 ~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                      .++.....++.++...++++..+.-
T Consensus        70 ~p~~~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          70 SPVRTFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCchhhhhhhhhhhccccccccccc
Confidence            3445667888999999998876654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.2  Score=38.53  Aligned_cols=78  Identities=13%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  171 (274)
                      .+.++.+|=-|++.|.   .+..+++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..           .
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            3557788888888873   456677799999999999999988888877655  56888999987621           1


Q ss_pred             CCCeeEEEeccccc
Q 024008          172 TELFDLIFDYTFFC  185 (274)
Q Consensus       172 ~~~fD~v~~~~~~~  185 (274)
                      .+..|+++.+....
T Consensus        82 ~g~idilinnag~~   95 (244)
T d1yb1a_          82 IGDVSILVNNAGVV   95 (244)
T ss_dssp             TCCCSEEEECCCCC
T ss_pred             cCCCceeEeecccc
Confidence            24567766654443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.95  E-value=0.46  Score=36.63  Aligned_cols=76  Identities=16%  Similarity=0.148  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~  172 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.......+...++.++.+|+.+...           -
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            456788888988774   35667779999999999999888877666543333468888999876211           1


Q ss_pred             CCeeEEEecc
Q 024008          173 ELFDLIFDYT  182 (274)
Q Consensus       173 ~~fD~v~~~~  182 (274)
                      ++.|+++.+.
T Consensus        82 G~iDiLVnnA   91 (258)
T d1iy8a_          82 GRIDGFFNNA   91 (258)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4677777654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.89  E-value=0.096  Score=40.79  Aligned_cols=90  Identities=11%  Similarity=0.046  Sum_probs=59.8

Q ss_pred             ceEEEEcccCC---CCCCCCeeEEEeccccccc--------C-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc
Q 024008          158 FVSFLKADFFT---WCPTELFDLIFDYTFFCAI--------E-PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY  225 (274)
Q Consensus       158 ~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~--------~-~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~  225 (274)
                      +--|+.+|..+   ..+++++|+|++...+.--        + .+....++.++.++|+|+|.+++.........  ...
T Consensus         4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~--~~~   81 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGE--AGS   81 (279)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCC--TTB
T ss_pred             cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcccccc--ccc
Confidence            34577788876   5678999999999876421        0 13356788999999999999988663322111  111


Q ss_pred             ccCHHHHHHHHhcCCCcEEEEeec
Q 024008          226 KVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       226 ~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      ......+..+++..||.......+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~  105 (279)
T d1eg2a_          82 GDLISIISHMRQNSKMLLANLIIW  105 (279)
T ss_dssp             CCHHHHHHHHHHHCCCEEEEEEEE
T ss_pred             cchhhHHHHHHhccCceeeeeeee
Confidence            123455667788889988766543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.87  E-value=0.021  Score=41.98  Aligned_cols=94  Identities=20%  Similarity=0.162  Sum_probs=59.2

Q ss_pred             CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008          107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~  179 (274)
                      .++.+||=.|  .|.|..+.++++ .|++++++.-+++..+.+++.    +-..-+.....|+.+    ......||+|+
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~   99 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVEYVGDSRSVDFADEILELTDGYGVDVVL   99 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCSEEEETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----cccccccCCccCHHHHHHHHhCCCCEEEEE
Confidence            4567898877  455667777777 788999998888877777643    211101111112211    12346799999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      ....     .    ..++.+.++|+++|+++...
T Consensus       100 d~~g-----~----~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_         100 NSLA-----G----EAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             ECCC-----T----HHHHHHHHTEEEEEEEEECS
T ss_pred             eccc-----c----hHHHHHHHHhcCCCEEEEEc
Confidence            5332     1    24567889999999988753

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.78  E-value=0.61  Score=35.91  Aligned_cols=60  Identities=22%  Similarity=0.055  Sum_probs=47.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~   68 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSS   68 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCC
Confidence            567888988887763   345666699999999999999988887776654  467888888864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.77  E-value=0.3  Score=35.04  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCcchhH-HHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC--C----CCCCCCeeE
Q 024008          107 LPKGRALVPGCGTGYDV-VAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF--T----WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~-~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~----~~~~~~fD~  177 (274)
                      .++.+||-+|+|..... ..+++ .| ..++++|.+++.++.+++.-.       ..++..+-.  +    ......+|+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-------~~~i~~~~~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-------DHVVDARRDPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-------SEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-------ceeecCcccHHHHHHHhhCCCCceE
Confidence            45689999999765554 45554 45 488999999999998887542       122222111  1    122356999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      |+..-.-        ...++...+++++||++++...
T Consensus       104 vid~~g~--------~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         104 AMDFVGS--------QATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEESSCC--------HHHHHHGGGGEEEEEEEEECCC
T ss_pred             EEEecCc--------chHHHHHHHHHhCCCEEEEEeC
Confidence            8843221        2346888999999999998654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.71  E-value=0.036  Score=40.76  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcCCcchh-HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCC-----cceEEEEcccCCCCC--------
Q 024008          107 LPKGRALVPGCGTGYD-VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNA-----KFVSFLKADFFTWCP--------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~-~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~--------  171 (274)
                      .++.+||=+|+|.-.. +...+. .|++|+++|.++..++..+......-..     ...+-..+.......        
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            4568999999997544 444444 8999999999999998888765322100     000000000000000        


Q ss_pred             -----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024008          172 -----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       172 -----~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                           -...|+|+....+..-..+  .-+-+++.+.+|||..++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP--~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAP--VLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCC--CCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCCcccc--eeehHHHHHhcCCCcEEE
Confidence                 1357999976543321111  112367889999999876

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.57  E-value=0.046  Score=42.18  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=56.4

Q ss_pred             EEEEcccCC---CCCCCCeeEEEeccccccc--------Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024008          160 SFLKADFFT---WCPTELFDLIFDYTFFCAI--------EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (274)
Q Consensus       160 ~~~~~d~~~---~~~~~~fD~v~~~~~~~~~--------~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~  224 (274)
                      ++..+|..+   ..+++++|+|++...+..-        +.    +....++.++.++|+|||.+++....         
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---------   76 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---------   76 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---------
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---------
Confidence            477888876   4677899999998876321        11    22456788999999999988765521         


Q ss_pred             cccCHHHHHHHHhcCCCcEEEEeecc
Q 024008          225 YKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~Gf~~~~~~~~~  250 (274)
                        .....+...+...||.......+.
T Consensus        77 --~~~~~~~~~~~~~g~~~~~~iiW~  100 (256)
T d1g60a_          77 --FNCAFICQYLVSKGMIFQNWITWD  100 (256)
T ss_dssp             --HHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             --hhhhhhhhhhhcccceeeeeeEee
Confidence              134567778888999887765443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.53  E-value=0.37  Score=37.26  Aligned_cols=61  Identities=15%  Similarity=-0.012  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~   68 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASL   68 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCC
Confidence            3567889999988774   455666799999999999998888877776654  468888888864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.44  E-value=0.82  Score=35.45  Aligned_cols=76  Identities=12%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~-----------~  171 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+..           .
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            457788888887773   3456666999999999999999888887766543 346889999987621           1


Q ss_pred             CCCeeEEEecc
Q 024008          172 TELFDLIFDYT  182 (274)
Q Consensus       172 ~~~fD~v~~~~  182 (274)
                      .++.|+++.+.
T Consensus        82 ~G~iDilVnnA   92 (274)
T d1xhla_          82 FGKIDILVNNA   92 (274)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCceEEEeec
Confidence            14577777664

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.35  E-value=0.091  Score=38.05  Aligned_cols=92  Identities=18%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             CCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024008          109 KGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY  181 (274)
Q Consensus       109 ~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~  181 (274)
                      +..||=-|  .|.|..+.++++ .|++|+++.-+++..+.+++.-..      ..+...|...    ....+.+|+|+..
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad------~vi~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS------EVISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS------EEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc------ceEeccchhchhhhcccCCCceEEEec
Confidence            45788766  456677788888 799999999988888888776422      1122222221    2234679998843


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~  215 (274)
                           +.    ...+.+..++|+++|+++++-..
T Consensus        98 -----vg----g~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          98 -----VG----GKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             -----CC----THHHHHHHTTEEEEEEEEECCCS
T ss_pred             -----Cc----HHHHHHHHHHhccCceEEEeecc
Confidence                 22    13467899999999999886543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.26  E-value=0.66  Score=35.52  Aligned_cols=59  Identities=15%  Similarity=0.070  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.....   .++.++.+|+.+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~   65 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSD   65 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCC
Confidence            457788888877663   24556669999999999999888887776443   468889999875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.26  E-value=0.74  Score=35.12  Aligned_cols=58  Identities=26%  Similarity=0.181  Sum_probs=44.2

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+...     .++.++.+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~   63 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQ   63 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCC
Confidence            3567888888988773   445666799999999999988877766653     457788888864

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.25  E-value=0.53  Score=35.90  Aligned_cols=71  Identities=21%  Similarity=0.255  Sum_probs=52.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCee
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~fD  176 (274)
                      +.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+..      ..+..+.+|+.+.       ..-++.|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVD   76 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence            567888988887763   34556669999999999988777666554      2477888998762       2236899


Q ss_pred             EEEeccc
Q 024008          177 LIFDYTF  183 (274)
Q Consensus       177 ~v~~~~~  183 (274)
                      +++.+..
T Consensus        77 ilVnnAg   83 (242)
T d1cyda_          77 LLVNNAA   83 (242)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9997643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=1.3  Score=33.77  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=47.5

Q ss_pred             CCCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .++++++|=-|++.|.-   +..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~   71 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITS   71 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence            45678888888776632   45666799999999999999988888777654  468888999875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.80  E-value=0.04  Score=39.94  Aligned_cols=97  Identities=14%  Similarity=0.136  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCCcc-hhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024008          107 LPKGRALVPGCGTG-YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G-~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~  183 (274)
                      .++.+|+=+|+|.= ..+...+. .|++|+++|.+++.++..+.....     +++....+-... ..-...|+|+....
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aal  104 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVL  104 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeee
Confidence            45689999999974 44444444 899999999999999988877643     355544433221 11135799997654


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEE
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~  210 (274)
                      +..-..+  .-+-+++.+.+|||..++
T Consensus       105 ipG~~aP--~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         105 VPGRRAP--ILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CTTSSCC--CCBCHHHHTTSCTTCEEE
T ss_pred             cCCcccC--eeecHHHHhhcCCCcEEE
Confidence            3221111  112367889999999876

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=1.3  Score=33.77  Aligned_cols=56  Identities=20%  Similarity=0.137  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      +.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+..      .++.++.+|+.+
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~   62 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQ   62 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCC
Confidence            467889999987773   34556669999999999998887776654      346778888765

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.77  E-value=1.5  Score=33.81  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~  168 (274)
                      ++++++|=.|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~   68 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT   68 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC
Confidence            456788888887763   3456666999999999999999988888766543 2468889999875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.73  E-value=1.2  Score=33.84  Aligned_cols=55  Identities=18%  Similarity=0.213  Sum_probs=40.6

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.-   +..|++.|++|+.+|.+++.++.+.+..       +..++.+|+.+
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~   60 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVAD   60 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCC
Confidence            4567888888877732   4556669999999999998887776543       35677788764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.63  E-value=1  Score=34.39  Aligned_cols=60  Identities=18%  Similarity=0.055  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhh-cCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+. ..+  .++.++.+|+.+
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~   66 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSN   66 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCC
Confidence            457889999988773   355666799999999999988776665443 222  457888899875

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.53  E-value=1.1  Score=34.27  Aligned_cols=57  Identities=18%  Similarity=0.080  Sum_probs=42.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+.     .++.++.+|+.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----~~~~~~~~Dvt~   62 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG-----PAACAIALDVTD   62 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CceEEEEeeCCC
Confidence            456788888887763   345666699999999999988777665542     357788888875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.36  E-value=0.27  Score=35.64  Aligned_cols=98  Identities=11%  Similarity=0.060  Sum_probs=56.9

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeE
Q 024008          106 ALPKGRALVPGCGTGYDV-VAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~  177 (274)
                      ..++.+|+=+|||..... ..+++ .| .+|+++|.+++.++.|++.-...    .++....|...     ......+|+
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~----~in~~~~~~~~~~~~~~~~g~G~d~  102 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE----CISPKDSTKPISEVLSEMTGNNVGY  102 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSE----EECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcE----EECccccchHHHHHHHHhccccceE
Confidence            345689999999865443 34444 66 48999999999999999885321    11111111110     112357898


Q ss_pred             EEecccccccChhHHHHHHHH-HHhcccCCcEEEEEEcc
Q 024008          178 IFDYTFFCAIEPEMRAAWAQK-IKDFLKPDGELITLMFP  215 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~-l~~~L~~gG~l~~~~~~  215 (274)
                      ++....    .    ...+.. +..+++.+|.+++....
T Consensus       103 vi~~~g----~----~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2         103 TFEVIG----H----LETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             EEECSC----C----HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             EEEeCC----c----hHHHHHHHHHhhcCCeEEEEEEcc
Confidence            884221    1    122333 44444566888886543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.33  E-value=1.5  Score=33.55  Aligned_cols=57  Identities=12%  Similarity=0.084  Sum_probs=43.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+.+   +  .++.++.+|+.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~   62 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---G--DAARYQHLDVTI   62 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---G--GGEEEEECCTTC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEcccCC
Confidence            567889999988873   35666779999999999998776655443   2  468888999875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=2.1  Score=33.49  Aligned_cols=63  Identities=19%  Similarity=0.087  Sum_probs=45.0

Q ss_pred             CCCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcC---CCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~  168 (274)
                      .++++.+|=-|++.|.-   +..|++.|++|+.+|.+++.++.+.+.+...   ....++.++.+|+.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~   77 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN   77 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC
Confidence            35678899888877743   3455669999999999998887776655422   112467888888875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=1.6  Score=33.01  Aligned_cols=57  Identities=18%  Similarity=0.125  Sum_probs=41.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+.+.     .+..++.+|+.+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~   61 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTD   61 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecC
Confidence            456778888877663   345566699999999999988887766653     346777788764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=90.75  E-value=0.12  Score=40.95  Aligned_cols=92  Identities=15%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             ceEEEEcccCC---CCCCCCeeEEEeccccccc-----C---h----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC
Q 024008          158 FVSFLKADFFT---WCPTELFDLIFDYTFFCAI-----E---P----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGG  222 (274)
Q Consensus       158 ~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~-----~---~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~  222 (274)
                      .-.++.+|..+   ..+++++|+|+...++...     +   .    +.+...+..++++|+|+|.+++...........
T Consensus        12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~   91 (320)
T d1booa_          12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP   91 (320)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred             CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchhhcccc
Confidence            34788998876   5678999999998776421     1   0    235678899999999999998866332111100


Q ss_pred             CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008          223 PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~Gf~~~~~~~~  249 (274)
                      .........+...+...|+........
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (320)
T d1booa_          92 ARSIYNFRVLIRMIDEVGFFLAEDFYW  118 (320)
T ss_dssp             EECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             cccchhHHHHHHHHHhcCceEeeeeec
Confidence            011123456666778888866655443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.12  Score=37.86  Aligned_cols=89  Identities=18%  Similarity=0.169  Sum_probs=58.8

Q ss_pred             CeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc---cCCCCCCCCeeEEEeccc
Q 024008          110 GRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~fD~v~~~~~  183 (274)
                      .+||=.|+  |.|..+.++++ .|++|+++.-+++..+.+++.-..       .++.-+   .........+|.|+.   
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad-------~vi~~~~~~~~~~l~~~~~~~vvD---  102 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS-------RVLPRDEFAESRPLEKQVWAGAID---  102 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE-------EEEEGGGSSSCCSSCCCCEEEEEE---
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc-------cccccccHHHHHHHHhhcCCeeEE---
Confidence            47776553  35566777877 899999999999988888765321       122222   122333456888763   


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                        .+.    ...+.+..+.|+++|+++.+..
T Consensus       103 --~Vg----g~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         103 --TVG----DKVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             --SSC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             --Ecc----hHHHHHHHHHhccccceEeecc
Confidence              222    2356889999999999988753

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=90.60  E-value=0.24  Score=40.95  Aligned_cols=47  Identities=11%  Similarity=0.121  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCC
Q 024008          108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~  154 (274)
                      +...++|||+-.|..+..++.    ...+|+++|+++...+..++++..+.
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            457899999999998876654    34599999999999999999876543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.25  E-value=1.5  Score=33.38  Aligned_cols=57  Identities=21%  Similarity=0.165  Sum_probs=41.6

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.+|.+++.++...+.+.     .+..++.+|+.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~   63 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSS   63 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CCeEEEEeecCC
Confidence            456788888877662   345566699999999999988877766552     346677788764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.87  E-value=0.24  Score=36.43  Aligned_cols=75  Identities=12%  Similarity=-0.072  Sum_probs=53.6

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEE
Q 024008          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v  178 (274)
                      .+++++||=.|++.|.   .+..+++.|++|+.++.+++.++...+.+...   .++.+...|..+.    ..-+..|++
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc---cchhhhhhhcccHHHHHHHhcCcCee
Confidence            5678899999977663   24556669999999999999888887776554   2456677776641    112568999


Q ss_pred             Eeccc
Q 024008          179 FDYTF  183 (274)
Q Consensus       179 ~~~~~  183 (274)
                      +.+..
T Consensus        97 in~Ag  101 (191)
T d1luaa1          97 FTAGA  101 (191)
T ss_dssp             EECCC
T ss_pred             eecCc
Confidence            97754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.65  E-value=2.2  Score=32.72  Aligned_cols=60  Identities=17%  Similarity=0.076  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC-hHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+..|.+ ++.++...+.+...+  .++.++.+|+.+
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~   79 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGV   79 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCC
Confidence            557888888887774   455666799999999986 556666666665554  457788888764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=89.55  E-value=0.83  Score=32.61  Aligned_cols=95  Identities=18%  Similarity=0.167  Sum_probs=58.1

Q ss_pred             CeEEEEcCCcchhHH--HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEE------EEcccCCCCCCCCeeEEEec
Q 024008          110 GRALVPGCGTGYDVV--AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSF------LKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~--~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~------~~~d~~~~~~~~~fD~v~~~  181 (274)
                      ++|-=||+|.-..+.  .|++.|.+|+.+|.+++.++..++.-......+....      ...|..+..  ...|+|+..
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~aD~iii~   79 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV--KDADVILIV   79 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH--TTCSEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh--cCCCEEEEE
Confidence            467778888765543  4455899999999999988887765321100001111      111211111  457888853


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~  211 (274)
                           .+......+++++...++++..+++
T Consensus        80 -----v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          80 -----VPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             -----SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             -----EchhHHHHHHHHhhhccCCCCEEEE
Confidence                 2333456788999999999886654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.34  E-value=2.7  Score=31.89  Aligned_cols=69  Identities=20%  Similarity=0.189  Sum_probs=48.9

Q ss_pred             EEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCCeeE
Q 024008          112 ALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELFDL  177 (274)
Q Consensus       112 vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~~fD~  177 (274)
                      +|=-|++.|.-   +..|++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..           .-++.|+
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            46667765532   34556699999999999999988887776655  46888899987621           1246777


Q ss_pred             EEecc
Q 024008          178 IFDYT  182 (274)
Q Consensus       178 v~~~~  182 (274)
                      ++.+.
T Consensus        82 lVnnA   86 (255)
T d1gega_          82 IVNNA   86 (255)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            77654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.25  E-value=1.6  Score=33.31  Aligned_cols=61  Identities=21%  Similarity=0.110  Sum_probs=44.3

Q ss_pred             CCCCCeEEEEcCCcc---hhHHHhhCCCCeEEEE-eCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGL-EISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G---~~~~~l~~~~~~v~~i-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++.++++|=-|++.|   ..+..|++.|++|+.. .-+....+.+.+.+...+  .++.++.+|+.+
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~   67 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISK   67 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCC
Confidence            356788898886665   4455666699998875 566777777777776665  468889999864

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=88.92  E-value=2.6  Score=31.94  Aligned_cols=54  Identities=20%  Similarity=0.180  Sum_probs=37.9

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++..+.+++.        +..++.+|+.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~--------~~~~~~~Dv~~   59 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI--------GGAFFQVDLED   59 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH--------TCEEEECCTTC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--------CCeEEEEeCCC
Confidence            467888888877663   2456666999999999998776655432        24566777764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.83  E-value=0.27  Score=35.58  Aligned_cols=99  Identities=13%  Similarity=-0.031  Sum_probs=58.2

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC--C---CCCCCCeeE
Q 024008          106 ALPKGRALVPGCGTGYDV-VAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF--T---WCPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~---~~~~~~fD~  177 (274)
                      ..++.+||=+|||..... ..+++ .|+ +|+++|.+++.++.+++.-...    -++....|..  .   ....+.+|.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~----~i~~~~~d~~~~~~~~~~~~~G~d~  100 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE----CLNPKDYDKPIYEVICEKTNGGVDY  100 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE----EECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE----EEcCCCchhHHHHHHHHhcCCCCcE
Confidence            456689999999865544 44454 565 8999999999999998753211    1111112211  0   112346899


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccC-CcEEEEEEccC
Q 024008          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKP-DGELITLMFPI  216 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~-gG~l~~~~~~~  216 (274)
                      |+..-.-        ...+......+.+ +|.+++.....
T Consensus       101 vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2         101 AVECAGR--------IETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             EEECSCC--------HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             EEEcCCC--------chHHHHHHHHHHHhcCceEEEEEec
Confidence            8843211        2334556665654 68888766433

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.81  E-value=1.3  Score=35.32  Aligned_cols=115  Identities=11%  Similarity=0.186  Sum_probs=73.4

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC--------------------
Q 024008           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL--------------------  153 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~--------------------  153 (274)
                      ..+.+++..  .+...|+-+|||.=.....+..  ++.+++=+|. |+.++.=++.+...                    
T Consensus        86 ~~v~~Fl~~--~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~  162 (328)
T d1rjda_          86 AAILEFLVA--NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFL  162 (328)
T ss_dssp             HHHHHHHHH--CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEE
T ss_pred             HHHHHHHHH--CCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhcccccccccccccc
Confidence            335555543  2345899999999777766654  4445555665 44444333332210                    


Q ss_pred             CCCcceEEEEcccCCC----------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008          154 PNAKFVSFLKADFFTW----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       154 ~~~~~v~~~~~d~~~~----------~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~  214 (274)
                      ..+++..++.+|+.+.          ......-++++=.++.+++++....+++.+.+... ++.+++.+.
T Consensus       163 ~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~  232 (328)
T d1rjda_         163 IDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDP  232 (328)
T ss_dssp             EECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEE
T ss_pred             CCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEecc
Confidence            0135678888998761          12234567888899999999988999998888775 455666553

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.81  Score=35.01  Aligned_cols=78  Identities=14%  Similarity=0.040  Sum_probs=56.3

Q ss_pred             CCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCC
Q 024008          109 KGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTEL  174 (274)
Q Consensus       109 ~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~~  174 (274)
                      ++.+|=-|++.|.-   +..|++.|++|+.+|.+++.++.+...+.......++.++.+|+.+..           .-++
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            56778888776632   345556999999999999988888777655433357899999998721           1257


Q ss_pred             eeEEEecccccc
Q 024008          175 FDLIFDYTFFCA  186 (274)
Q Consensus       175 fD~v~~~~~~~~  186 (274)
                      .|+++.+.....
T Consensus        83 iDilVnnAg~~~   94 (254)
T d2gdza1          83 LDILVNNAGVNN   94 (254)
T ss_dssp             CCEEEECCCCCC
T ss_pred             cCeecccccccc
Confidence            999998765544

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=88.74  E-value=2.4  Score=31.87  Aligned_cols=57  Identities=18%  Similarity=0.149  Sum_probs=41.5

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      +.++.+|=.|++.|.-   +..|++.|++|+.++.+.+.++...+.+   +  .++.++.+|+.+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dls~   62 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---E--AEAIAVVADVSD   62 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---C--SSEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CceEEEEecCCC
Confidence            5678889889887633   4555669999999999998776555443   2  457788888864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=88.36  E-value=1.7  Score=33.22  Aligned_cols=60  Identities=15%  Similarity=0.060  Sum_probs=42.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHh-hcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.+..+.+.+ ...+  .++.++.+|+.+
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~   70 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSN   70 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCC
Confidence            557788888977663   34566669999999999887665554443 2222  458888899875

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.95  E-value=4.3  Score=30.65  Aligned_cols=78  Identities=14%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCcch---hHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024008          108 PKGRALVPGCGTGY---DVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  181 (274)
                      .++.+|=-|++.|.   .+..|++   .|++|+.++.+++.++.+.+.+...+...++.++.+|+.+             
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~-------------   71 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT-------------   71 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS-------------
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC-------------
Confidence            34455555766653   2344554   6899999999999998887766543333467888888752             


Q ss_pred             ccccccChhHHHHHHHHHHhcccC
Q 024008          182 TFFCAIEPEMRAAWAQKIKDFLKP  205 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~l~~~L~~  205 (274)
                             ++....+++.+.+..+.
T Consensus        72 -------~~~v~~l~~~~~~~~~~   88 (259)
T d1oaaa_          72 -------EAGVQRLLSAVRELPRP   88 (259)
T ss_dssp             -------HHHHHHHHHHHHHSCCC
T ss_pred             -------HHHHHHHHHHHHHhhhh
Confidence                   34555666766665543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=87.75  E-value=2.8  Score=31.60  Aligned_cols=58  Identities=19%  Similarity=0.150  Sum_probs=38.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.+|.++..  .+.......+  .++.++.+|+.+
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g--~~~~~~~~Dvs~   63 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLG--RRVLTVKCDVSQ   63 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcC--CcEEEEEeeCCC
Confidence            456788888877663   345666699999999987642  2222333333  468888999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=87.27  E-value=1.8  Score=30.77  Aligned_cols=94  Identities=14%  Similarity=0.064  Sum_probs=55.7

Q ss_pred             CCCCCeEEEEcCCcchh-HHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCe
Q 024008          106 ALPKGRALVPGCGTGYD-VVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~-~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~f  175 (274)
                      ..++.+||=+|+|.+.. +..+++ .+ .+|+++|.+++..+.+++.-...      .+...+..+       ....+.+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~------~i~~~~~~~~~~~~~~~~~~~G~   99 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE------CVNPQDYKKPIQEVLTEMSNGGV   99 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE------EECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee------EEecCCchhHHHHHHHHHhcCCC
Confidence            44568999999975443 333343 55 59999999999999988764211      111111111       1223579


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEE
Q 024008          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~  213 (274)
                      |+|+......        ..++.....++++ |.+++..
T Consensus       100 D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2         100 DFSFEVIGRL--------DTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             SEEEECSCCH--------HHHHHHHHHBCTTTCEEEECS
T ss_pred             CEEEecCCch--------hHHHHHHHHHhcCCcceEEec
Confidence            9998543222        2345666777776 5555544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.98  E-value=0.98  Score=34.71  Aligned_cols=77  Identities=14%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCC-----------C
Q 024008          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~-----------~  171 (274)
                      ++++.+|=-|++.|.-   +..|++.|++|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+..           .
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            4567788888876633   455666999999999999999888877765543 346899999998621           1


Q ss_pred             CCCeeEEEeccc
Q 024008          172 TELFDLIFDYTF  183 (274)
Q Consensus       172 ~~~fD~v~~~~~  183 (274)
                      .++.|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (264)
T d1spxa_          83 FGKLDILVNNAG   94 (264)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCCEeecccc
Confidence            257999987743

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=86.40  E-value=1.7  Score=33.36  Aligned_cols=60  Identities=18%  Similarity=0.080  Sum_probs=43.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCCh-HHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.++.+. ..++...+.+...+  .++.++.+|+.+
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~   68 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTV   68 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            456788888887773   3456666999999999874 45666666655554  467888899875

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.53  E-value=2.9  Score=31.71  Aligned_cols=56  Identities=13%  Similarity=-0.006  Sum_probs=41.9

Q ss_pred             eEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          111 RALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       111 ~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      .+|=-|++.|.   .+..|++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+
T Consensus         4 ValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~   62 (257)
T d2rhca1           4 VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRS   62 (257)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCC
Confidence            44666766553   235556699999999999999988888776655  468888999864

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.18  E-value=2.6  Score=32.07  Aligned_cols=61  Identities=21%  Similarity=0.134  Sum_probs=41.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC-hHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.++.+ ++.++.+.+...... ..++.++.+|+.+
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~   66 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSK   66 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTS
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence            346778877877764   345666799999999986 556666555443221 1358888999875

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=85.14  E-value=0.66  Score=33.73  Aligned_cols=98  Identities=9%  Similarity=0.053  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcCC---cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCC
Q 024008          107 LPKGRALVPGCG---TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G---~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~  173 (274)
                      .++.+||=+.+|   .|..+..+++ .|++++++--+++..+...+.++..|-+.-+..-..|..+.         ....
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~  106 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG  106 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccC
Confidence            344677776333   4566777777 78898887544444433333333333211111111122111         0135


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      .+|+|+..     +..    ..+....++|+++|.++.+-
T Consensus       107 ~vdvv~D~-----vg~----~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         107 EAKLALNC-----VGG----KSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             CEEEEEES-----SCH----HHHHHHHHTSCTTCEEEECC
T ss_pred             CceEEEEC-----CCc----chhhhhhhhhcCCcEEEEEC
Confidence            68998832     222    23467789999999988753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.75  E-value=2.8  Score=29.46  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC-------CCCCCC
Q 024008          106 ALPKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT-------WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-------~~~~~~  174 (274)
                      ..++.+||=.|||. |..+..+++ .| ..|+++|.+++..+.+++.-..       .++.. +-.+       ....+.
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-------~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-------EEEeCCchhhHHHHHHHHHcCCC
Confidence            35668999888873 233445555 56 4899999999999988876421       12211 1111       112357


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~  213 (274)
                      +|+|+..-.     .   ...++....++++||.+++..
T Consensus        99 ~D~vid~~G-----~---~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          99 VDYSFECIG-----N---VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             BSEEEECSC-----C---HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEeeecCC-----C---HHHHHHHHHhhcCCceeEEEE
Confidence            999985321     1   235677888999998776654

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.58  E-value=2.5  Score=31.85  Aligned_cols=56  Identities=21%  Similarity=0.346  Sum_probs=38.5

Q ss_pred             CeEEEEcCCcchh---HHHhh---CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          110 GRALVPGCGTGYD---VVAMA---SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       110 ~~vLDiG~G~G~~---~~~l~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ++||=-|++.|.-   +..|+   +.|++|+.++.+++.++.+++.....   .++.++.+|+.+
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dvs~   64 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH---SNIHILEIDLRN   64 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC---TTEEEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC---CcEEEEEEEecc
Confidence            4688788777632   22333   47889999999887776666544443   468888998864

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.45  E-value=2.8  Score=31.28  Aligned_cols=65  Identities=11%  Similarity=0.060  Sum_probs=45.1

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEE
Q 024008          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v  178 (274)
                      ++++++|=-|++.|.-   +..|++.|++|+.+|.+++.++..           ..+++.+|+.+.     ..-++.|++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~-----------~~~~~~~Dv~~~~~~~~~~~g~iD~l   70 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-----------GHRYVVCDLRKDLDLLFEKVKEVDIL   70 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-----------CSEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc-----------CCcEEEcchHHHHHHHHHHhCCCcEE
Confidence            4577899999877633   355666999999999998755432           145677887652     123679998


Q ss_pred             Eecc
Q 024008          179 FDYT  182 (274)
Q Consensus       179 ~~~~  182 (274)
                      +.+.
T Consensus        71 VnnA   74 (234)
T d1o5ia_          71 VLNA   74 (234)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            8764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=82.95  E-value=2.8  Score=29.73  Aligned_cols=121  Identities=11%  Similarity=0.015  Sum_probs=66.2

Q ss_pred             EEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE-cc-cCCCCCCCCeeEEEeccccccc
Q 024008          112 ALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-AD-FFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       112 vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d-~~~~~~~~~fD~v~~~~~~~~~  187 (274)
                      |==||+|.  ..++..|++.|++|++.|.+++..+...+.........+..... .| +.....  ..+.+....    .
T Consensus         4 IGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~   77 (178)
T d1pgja2           4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLK--KPRKALILV----Q   77 (178)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBC--SSCEEEECC----C
T ss_pred             EEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcc--cceEEEEee----c
Confidence            44455544  22334455589999999999998887776654433222222211 11 111111  122222111    1


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~  247 (274)
                      +.......+..+...+++|.+++-..  .       ...-+..++.+.+...|+..++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~iii~~s--t-------~~~~~~~~~~~~l~~~~~~~ldap  128 (178)
T d1pgja2          78 AGAATDSTIEQLKKVFEKGDILVDTG--N-------AHFKDQGRRAQQLEAAGLRFLGMG  128 (178)
T ss_dssp             CSHHHHHHHHHHHHHCCTTCEEEECC--C-------CCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CcchhhhhhhhhhhhccccceecccC--c-------cchhHHHHHHHHHhhcceeEeccc
Confidence            22455677788999999988765432  1       111235677778888888776653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.80  E-value=6.1  Score=29.48  Aligned_cols=55  Identities=18%  Similarity=0.200  Sum_probs=40.5

Q ss_pred             EEEEcCCcch---hHHHhhCCCCe-------EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008          112 ALVPGCGTGY---DVVAMASPERY-------VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       112 vLDiG~G~G~---~~~~l~~~~~~-------v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  168 (274)
                      ||=-|++.|.   .+..|++.|++       ++.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~   68 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISD   68 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTS
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCC
Confidence            4566777663   23455567775       8999999999988887776665  468888999876

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=82.24  E-value=1.4  Score=34.14  Aligned_cols=78  Identities=17%  Similarity=0.044  Sum_probs=54.9

Q ss_pred             CCCCCeEEEEcCCcc---hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G---~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  171 (274)
                      .++++++|=-|++.|   ..+..|++.|++|+.+|.++..++.+.+.+.... ..++.++.+|+.+..           .
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhh
Confidence            356788999998776   3445666699999999999988776665543321 145888999997621           1


Q ss_pred             CCCeeEEEecccc
Q 024008          172 TELFDLIFDYTFF  184 (274)
Q Consensus       172 ~~~fD~v~~~~~~  184 (274)
                      .+..|+++.+...
T Consensus       101 ~g~iDilvnnAg~  113 (294)
T d1w6ua_         101 AGHPNIVINNAAG  113 (294)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             ccccchhhhhhhh
Confidence            3678999877543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.71  E-value=3.8  Score=30.75  Aligned_cols=75  Identities=21%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCc--c---hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----------CC
Q 024008          107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----------WC  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~--G---~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------~~  170 (274)
                      +.++++|=-|++.  |   ..+..|++.|++|+..+.+++..+.+.+.....+   +......|...           ..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcC---CcceeecccchHHHHHHHHHHhhh
Confidence            4678899888765  5   2456777899999999999887777766665543   35556666554           12


Q ss_pred             CCCCeeEEEecccc
Q 024008          171 PTELFDLIFDYTFF  184 (274)
Q Consensus       171 ~~~~fD~v~~~~~~  184 (274)
                      .....|.++.+..+
T Consensus        80 ~~~~~d~~v~~a~~   93 (258)
T d1qsga_          80 VWPKFDGFVHSIGF   93 (258)
T ss_dssp             TCSSEEEEEECCCC
T ss_pred             cccccceEEEeecc
Confidence            23578888876443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.50  E-value=1.4  Score=28.21  Aligned_cols=66  Identities=11%  Similarity=0.060  Sum_probs=39.1

Q ss_pred             CeEEEEc-CCcchh--HHHhhCCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008          110 GRALVPG-CGTGYD--VVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG-~G~G~~--~~~l~~~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  185 (274)
                      .+|.=+| ||+|-.  +..|.+.|+.|+|.|.... .....    ...|    +.+..+......  ...|+|+.+..+.
T Consensus         9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L----~~~G----i~v~~g~~~~~i--~~~d~vV~S~AI~   78 (96)
T d1p3da1           9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRL----AQAG----AKIYIGHAEEHI--EGASVVVVSSAIK   78 (96)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHH----HHTT----CEEEESCCGGGG--TTCSEEEECTTSC
T ss_pred             CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHH----HHCC----CeEEECCccccC--CCCCEEEECCCcC
Confidence            5677776 455544  4556669999999998632 22222    2233    455555443322  3468998877654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.43  E-value=5.6  Score=29.74  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=34.8

Q ss_pred             CCeEEEEcCCcc---hhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC
Q 024008          109 KGRALVPGCGTG---YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF  167 (274)
Q Consensus       109 ~~~vLDiG~G~G---~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  167 (274)
                      +++||=-|++.|   ..+..|++.|+  +|+++.-+.+.++..++.   .  ..++.++.+|+.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~---~--~~~~~~~~~Dvs   61 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---K--DSRVHVLPLTVT   61 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC---C--CTTEEEEECCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh---h--CCceEEEEEecC
Confidence            467888888777   33456666775  688877777655544321   1  245777877775