Citrus Sinensis ID: 024014

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MKKMMMLTKNHRLPHLHAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccEcccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHHccccccccEcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkkmmmltknhrlphlhagnhgqknqnvqqgasamptirdecftqppqlelvghsiacasnpyqdpyyggmmaayghqpvgypqfvgmpharmplplemaqepvyvNAKQYMGILRRRQARAKAELEKKLIKVrkpylhesrHQHAMRRargsggrfakktddaskgnsekkgggsgirpslsgsssgsepvpsdsaetwnssasqqdvggsqahNMHEARNhananggyqnhglqastyhshlgdrgetgdcsgkqwgsissnqasqrplaiq
Flexible Loop (DISEMBL)
MKKMMMLTKNHRLPHLHAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIkvrkpylhesrhqhamrrargsggrfakktddaskgnsekkgggsgirpslsgsssgsePVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWgsissnqasqrplaiq
Low Complexity Region (SEG)
MKKMMMLTKNHRLPHLHAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDAskgnsekkgggsgirpslsgsssgsepvpsdsAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ
Disordered region (IsUnstruct)
****************************************ECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQ**********LIK**********************************************************************************************************************************************
Disordered Region (DISOPRED)
*********************************************************CASNPYQDPYYGGMMAAYG**********************MAQEPVYVNAKQYMGILRRRQAR*********************************************************************************************************************************************************
Disordered Region (DISEMBL)
MKKMMMLTKNHRLPHLHAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLH***************************************************************************HNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGS**************
Disordered Region (DISPRO)
*****************************************CFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRAR*S**RFA********************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKMMMLTKNHRLPHLHAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q945M9	303	Nuclear transcription fac	yes	no	0.762	0.689	0.515	6e-58
Q9LXV5	272	Nuclear transcription fac	no	no	0.645	0.650	0.602	2e-53
Q93ZH2	340	Nuclear transcription fac	no	no	0.346	0.279	0.591	8e-27
Q84JP1	190	Nuclear transcription fac	no	no	0.492	0.710	0.489	9e-26
Q8VY64	198	Nuclear transcription fac	no	no	0.397	0.550	0.521	1e-24
Q9LNP6	328	Nuclear transcription fac	no	no	0.328	0.274	0.581	1e-24
Q9LVJ7	308	Nuclear transcription fac	no	no	0.372	0.331	0.546	4e-24
Q9SYH4	308	Nuclear transcription fac	no	no	0.518	0.461	0.407	4e-24
Q8LFU0	269	Nuclear transcription fac	no	no	0.456	0.464	0.445	9e-20
Q9M9X4	295	Nuclear transcription fac	no	no	0.412	0.383	0.436	2e-19

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  224 bits (571), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 135/262 (51%), Positives = 158/262 (60%), Gaps = 53/262 (20%)

Query: 18  AGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACAS-NPYQDPYYGGMMAAYG 76
           AG++  KNQ         P         PP  +LVGH++  AS NPYQDPYY G+M AYG
Sbjct: 90  AGDYSDKNQESLHHGITQP---------PPHPQLVGHTVGWASSNPYQDPYYAGVMGAYG 140

Query: 77  HQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKP 136
           H P+G+  + GMPH+RMPLP EMAQEPV+VNAKQY  ILRRRQARAKAELEKKLIK RKP
Sbjct: 141 HHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKP 200

Query: 137 YLHESRHQHAMRRARGSGGRFAKKTD-DASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSD 195
           YLHESRHQHAMRR RG+GGRFAKKT+ +ASK  +E+K  G   +   S SSS      SD
Sbjct: 201 YLHESRHQHAMRRPRGTGGRFAKKTNTEASKRKAEEKSNGHVTQ---SPSSSN-----SD 252

Query: 196 SAETWNSSASQQDVGGSQAHNMHEARNHANANGGY---QNHGLQASTYHSHLGDRGETGD 252
             E W                          NG Y   Q   +Q+S Y      R E G+
Sbjct: 253 QGEAW--------------------------NGDYRTPQGDEMQSSAY-----KRREEGE 281

Query: 253 CSGKQWGSISSNQASQRPLAIQ 274
           CSG+QW S+SSN  SQ  LAI+
Sbjct: 282 CSGQQWNSLSSNHPSQARLAIK 303

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/186 (60%), Positives = 136/186 (73%), Gaps = 9/186 (4%)

Query: 20  NHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQP 79
           NHG +  +    A ++  + D+   QPP  ELVGH IAC  NPYQDPYYGG+M AYGHQ 
Sbjct: 95  NHGMEGNDP---ALSIRNMHDQPLVQPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQ 149

Query: 80  VGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLH 139
           +G+  ++GMP  R  LPL+MAQEPVYVNAKQY GILRRR+ARAKAELE+K+I+ RKPYLH
Sbjct: 150 LGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLH 209

Query: 140 ESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAET 199
           ESRH+HAMRRAR SGGRFAKK++  +    E  GG    R S + +SSGSE V +DS ET
Sbjct: 210 ESRHKHAMRRARASGGRFAKKSEVEA---GEDAGGRDRERGSAT-NSSGSEQVETDSNET 265

Query: 200 WNSSAS 205
            NSS +
Sbjct: 266 LNSSGA 271

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  120 bits (302), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 71/98 (72%), Gaps = 3/98 (3%)

Query: 63  YQDPYYGGMMAA--YGHQPVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQ 119
           Y DP+YGG++AA      P   PQ V M   R+PLP E+ + +PV+VNAKQY  I+RRRQ
Sbjct: 137 YADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQ 196

Query: 120 ARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 157
            RAK E + KLI+ RKPYLHESRH HA++R RGSGGRF
Sbjct: 197 QRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRF 234

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  117 bits (293), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 90/139 (64%), Gaps = 4/139 (2%)

Query: 55  SIACASNPYQDPYYGGMMAAYGHQPVG-YPQFVGMPHARMPLPLEMAQEPVYVNAKQYMG 113
           S+A    PY DPYY  + A       G + Q +G+    +PLP +  +EPV+VNAKQY G
Sbjct: 52  SMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHG 111

Query: 114 ILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDASKGNS-E 170
           ILRRRQ+RA+ E + K+IK RKPYLHESRH HA+RR RG GGRF  AKK D+  + +S E
Sbjct: 112 ILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHE 171

Query: 171 KKGGGSGIRPSLSGSSSGS 189
           +K   S  + +++ SS  S
Sbjct: 172 EKSNLSAGKSAMAASSGTS 190

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 73/115 (63%), Gaps = 6/115 (5%)

Query: 62  PYQDPYYGGMMAAYGHQPVGYP----QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRR 117
           PY DPYY  + A   + P  YP    Q +GM    +PL  +  +EPV+VNAKQY GILRR
Sbjct: 54  PYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRR 113

Query: 118 RQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDASKGNSE 170
           RQ+RAK E   + IK +KPY+HESRH HA+RR RG GGRF  AKK +   K   E
Sbjct: 114 RQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKEEEE 168

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 71/98 (72%), Gaps = 8/98 (8%)

Query: 63  YQDPYYGGMM-AAYGHQPVGY-PQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQ 119
           Y DP++GG+M AAY  Q   + PQ       R+PLP ++ + EPV+VNAKQ+  I+RRRQ
Sbjct: 135 YADPHFGGLMPAAYLPQATIWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIMRRRQ 189

Query: 120 ARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 157
            RAK E + KLIK RKPYLHESRH HA++R RGSGGRF
Sbjct: 190 QRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRF 227

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 74/108 (68%), Gaps = 6/108 (5%)

Query: 56  IACASNPYQ---DPYYGGMMAA-YGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAK 109
           I  AS P      P++ G ++  Y  Q  V +PQ  G+  +RMPLP  + + EP++VNAK
Sbjct: 119 IEAASWPLHGNVTPHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAK 178

Query: 110 QYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 157
           QY  ILRRR+ RAK E + KLIKVRKPYLHESRH HA++R RGSGGRF
Sbjct: 179 QYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRF 226

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 10/152 (6%)

Query: 20  NHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMA-AYGHQ 78
           N G+  +N  +  +    +  +     P    +  S+ CA    +  ++ G +A  Y   
Sbjct: 96  NLGKPIENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCA----ETSHFNGFLAPEYAST 151

Query: 79  PVGYP--QFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVRK 135
           P   P  + +G+  +R+PLP  + + EP++VNAKQY  ILRRR+ RAK E + KLIK RK
Sbjct: 152 PTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRK 211

Query: 136 PYLHESRHQHAMRRARGSGGRF--AKKTDDAS 165
           PYLHESRH HA++RARGSGGRF   KK  ++S
Sbjct: 212 PYLHESRHLHALKRARGSGGRFLNTKKLQESS 243

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 86/146 (58%), Gaps = 21/146 (14%)

Query: 62  PYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQE---PVYVNAKQYMGILRRR 118
           P+ + YYG +++AYG Q             R+ +PL+M  E    +YVN+KQY GI+RRR
Sbjct: 101 PHVEQYYG-VVSAYGSQ---------RSSGRVMIPLKMETEEDGTIYVNSKQYHGIIRRR 150

Query: 119 QARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFA-KKTDDASKGNSEKKGGGSG 177
           Q+RAKAE   KL + RKPY+H SRH HAMRR RGSGGRF   KT DA+K +       S 
Sbjct: 151 QSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTKTADAAKQSKPSNSQSSE 207

Query: 178 I----RPSLSGSSSGSEPVPSDSAET 199
           +      +++ S   +E   SDSA T
Sbjct: 208 VFHPENETINSSREANESNLSDSAVT 233

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 82/142 (57%), Gaps = 29/142 (20%)

Query: 43  FTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQE 102
           F+QPP              PY +  Y G+++AYG Q            +R+ LPL M  E
Sbjct: 96  FSQPP---------IYTKYPYGEQQYYGVVSAYGSQ------------SRVMLPLNMETE 134

Query: 103 --PVYVNAKQYMGILRRRQARAKAE--LEKKLI--KVRKPYLHESRHQHAMRRARGSGGR 156
              +YVN+KQY GI+RRRQ+RAKA   L++K +  + RKPY+H SRH HA+RR RGSGGR
Sbjct: 135 DSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGR 194

Query: 157 F--AKKTDDASKGNSEKKGGGS 176
           F   K  +  + G + KKG GS
Sbjct: 195 FLNTKSQNLENSGTNAKKGDGS 216

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
356566267	338	PREDICTED: nuclear transcription factor	0.875	0.710	0.695	1e-85
255544876	350	Nuclear transcription factor Y subunit A	0.927	0.725	0.689	1e-85
356527208	336	PREDICTED: nuclear transcription factor	0.872	0.711	0.685	5e-83
357460373	289	Nuclear transcription factor Y subunit [	0.868	0.823	0.664	2e-82
356552340	327	PREDICTED: nuclear transcription factor	0.890	0.746	0.660	2e-82
388523189	329	nuclear transcription factor Y subunit A	0.868	0.723	0.664	6e-82
356527210	338	PREDICTED: nuclear transcription factor	0.861	0.698	0.691	7e-82
357460371	349	Nuclear transcription factor Y subunit [	0.868	0.681	0.664	7e-82
297746308	306	unnamed protein product [Vitis vinifera]	0.919	0.823	0.639	1e-79
449450972	341	PREDICTED: nuclear transcription factor	0.912	0.733	0.652	2e-79

>gi|356566267|ref|XP_003551355.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Glycine max]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/243 (69%), Positives = 191/243 (78%), Gaps = 3/243 (1%)

Query: 18  AGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGH 77
            GN+GQ+ Q +Q  AS+ P++R+EC TQ PQLELVGHSIACA+NPYQDPYYGGMMAAYGH
Sbjct: 92  TGNYGQEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGH 151

Query: 78  QPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPY 137
           Q +GY  F+GMPHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KLIK RKPY
Sbjct: 152 QQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPY 211

Query: 138 LHESRHQHAMRRARGSGGRFAKKTDDASKGNS--EKKGGGSGIRPSLSGSSSGSEPVPSD 195
           LHESRHQHAMRRARG+GGRFAKKTD     +S  EK  G   +  S S SSSGSEP+ SD
Sbjct: 212 LHESRHQHAMRRARGTGGRFAKKTDGEGSNHSGKEKDNGTDSVLSSQSISSSGSEPLHSD 271

Query: 196 SAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNH-GLQASTYHSHLGDRGETGDCS 254
           SAETWNS   QQD   S+ HN  +A  + N +G Y NH GLQ+S YHS  G+R E  DCS
Sbjct: 272 SAETWNSPNMQQDARASKVHNRFKAPCYQNGSGSYHNHNGLQSSVYHSSSGERLEERDCS 331

Query: 255 GKQ 257
           G+Q
Sbjct: 332 GQQ 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544876|ref|XP_002513499.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis] gi|223547407|gb|EEF48902.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 178/258 (68%), Positives = 199/258 (77%), Gaps = 4/258 (1%)

Query: 20  NHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQP 79
           N GQ+N+N+Q  A +M  +RDE  TQP QLELVGHSIACASNPYQDPYYGGMMA YGHQP
Sbjct: 94  NGGQENRNLQHVAPSMTAMRDEGLTQPTQLELVGHSIACASNPYQDPYYGGMMAPYGHQP 153

Query: 80  VGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLH 139
           +GYP F+G    RM LP E+AQEPVYVNAKQY GILRRRQARAKAE EKKLIKVRKPYLH
Sbjct: 154 LGYP-FLGGHQVRMALPNEIAQEPVYVNAKQYPGILRRRQARAKAEHEKKLIKVRKPYLH 212

Query: 140 ESRHQHAMRRARGSGGRFAKKT-DDASKGNSEKKGGGSGIRP-SLSGSSSGSEPVPSDSA 197
           ESRHQHAMRRARGSGGRFAKKT  D SK N E     +G  P S SGSSSGSE +PSDSA
Sbjct: 213 ESRHQHAMRRARGSGGRFAKKTGGDDSKNNKEGTANDTGAIPSSQSGSSSGSEQLPSDSA 272

Query: 198 ETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNH-GLQASTYHSHLGDRGETGDCSGK 256
           +TWN     Q++  ++ ++  EARNH N    YQNH GLQ   +H H G++GE  DCSG+
Sbjct: 273 QTWNLPHGDQELRSARVYDTSEARNHINGGSHYQNHSGLQTLKHHPHSGEKGEDEDCSGQ 332

Query: 257 QWGSISSNQASQRPLAIQ 274
           Q GSISSNQ SQRPLAIQ
Sbjct: 333 QRGSISSNQVSQRPLAIQ 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527208|ref|XP_003532204.1| PREDICTED: nuclear transcription factor Y subunit A-1-like isoform 1 [Glycine max]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/242 (68%), Positives = 188/242 (77%), Gaps = 3/242 (1%)

Query: 18  AGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGH 77
            GN+ Q+ Q +Q  AS+ P++R+EC TQ PQLELVGHSIAC++NPYQDPYYGGMMAAYGH
Sbjct: 92  TGNYEQEQQGMQHTASSPPSMREECLTQTPQLELVGHSIACSTNPYQDPYYGGMMAAYGH 151

Query: 78  QPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPY 137
           Q +GY  F+GMPHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KLIK RKPY
Sbjct: 152 QQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPY 211

Query: 138 LHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSA 197
           LHESRHQHAMRRARG+GGRFAKKT D    N   K   +G     S SSSGSEP+ SDSA
Sbjct: 212 LHESRHQHAMRRARGTGGRFAKKT-DGEGSNHLGKEKDNGTDSVQSISSSGSEPLHSDSA 270

Query: 198 ETWNSSASQQDVGGSQAHN-MHEARNHANANGGYQNH-GLQASTYHSHLGDRGETGDCSG 255
           ETWNS   QQD   S+ HN   EA ++ N +G Y NH GLQ+S YHS  G+R E  DCSG
Sbjct: 271 ETWNSPNMQQDARASKVHNSRFEAPSYQNGSGSYHNHNGLQSSVYHSSSGERVEERDCSG 330

Query: 256 KQ 257
           +Q
Sbjct: 331 QQ 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460373|ref|XP_003600468.1| Nuclear transcription factor Y subunit [Medicago truncatula] gi|355489516|gb|AES70719.1| Nuclear transcription factor Y subunit [Medicago truncatula]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/262 (66%), Positives = 197/262 (75%), Gaps = 24/262 (9%)

Query: 17  HAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYG 76
            +GN+GQ+ Q +Q  AS+   IR+EC TQ PQLELVGHSIACA+NPYQDPYYGGMMAAY 
Sbjct: 48  QSGNYGQE-QGMQNTASSA-VIREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYP 105

Query: 77  HQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKP 136
           HQP+GYP F+G+PHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KLIK RKP
Sbjct: 106 HQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKP 165

Query: 137 YLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDS 196
           YLHESRHQHA+RRARG+GGRFAKKTD  + G   K  G   +  S S SSSGSE +PSDS
Sbjct: 166 YLHESRHQHALRRARGTGGRFAKKTDGEASG---KDNGSGPVLSSQSISSSGSELLPSDS 222

Query: 197 AETWNSSASQQDVGGSQAHNMHEARNHANANGGY----QNHGLQASTYHSHLGDRGETGD 252
           AETWNS   +QD  GS            N NGG      N+G+Q+S Y    G+R E GD
Sbjct: 223 AETWNSPNMRQDARGS------------NENGGSSYHNNNNGMQSSRYQ---GERVEEGD 267

Query: 253 CSGKQWGSISSNQASQRPLAIQ 274
           CSG+   SISSN+ASQR LAIQ
Sbjct: 268 CSGQLRVSISSNEASQRRLAIQ 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552340|ref|XP_003544526.1| PREDICTED: nuclear transcription factor Y subunit A-9-like isoform 2 [Glycine max]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/259 (66%), Positives = 194/259 (74%), Gaps = 15/259 (5%)

Query: 19  GNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQ 78
           GN+GQ +Q +Q  +S+ P +RD+C TQ PQLELVGHSIACASN Y    YGGMM A+ HQ
Sbjct: 81  GNYGQDHQALQHSSSSAPLVRDDCLTQAPQLELVGHSIACASNLY----YGGMMIAHVHQ 136

Query: 79  PVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYL 138
            +GY  F+GMPHARM LPLEMAQEPVYVNAKQY GILRRRQARAKAELEKKLIKVRKPYL
Sbjct: 137 QLGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYL 196

Query: 139 HESRHQHAMRRARGSGGRFAKKTD-DASKGNSEKKGGGSGIRP-SLSGSSSGSEPVPSDS 196
           HESRHQHA+RRARG+GGRFAKKT+ +AS   +E+K  G+G  P S S SSSG   +PSDS
Sbjct: 197 HESRHQHAIRRARGNGGRFAKKTEVEASNHMNEEKDMGTGQVPLSRSISSSGFGSLPSDS 256

Query: 197 AETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQ-ASTYHSHLGDRGETGDCSG 255
           AETWNS + QQ   GSQ H   E RN+AN         LQ +ST   H G+R E GDCSG
Sbjct: 257 AETWNSPSVQQGARGSQVHERFEERNYANV--------LQSSSTSCLHSGERAEEGDCSG 308

Query: 256 KQWGSISSNQASQRPLAIQ 274
           +Q GSISS   SQR LAIQ
Sbjct: 309 QQRGSISSEHTSQRRLAIQ 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523189|gb|AFK49647.1| nuclear transcription factor Y subunit A5 [Medicago truncatula]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 174/262 (66%), Positives = 197/262 (75%), Gaps = 24/262 (9%)

Query: 17  HAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYG 76
            +GN+GQ+ Q +Q  AS+   IR+EC TQ PQLELVGHSIACA+NPYQDPYYGGMMAAY 
Sbjct: 88  QSGNYGQE-QGMQNTASSA-VIREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYP 145

Query: 77  HQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKP 136
           HQP+GYP F+G+PHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KLIK RKP
Sbjct: 146 HQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKP 205

Query: 137 YLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDS 196
           YLHESRHQHA+RRARG+GGRFAKKTD  + G   K  G   +  S S SSSGSE +PSDS
Sbjct: 206 YLHESRHQHALRRARGTGGRFAKKTDGEASG---KDNGSGPVLSSQSISSSGSELLPSDS 262

Query: 197 AETWNSSASQQDVGGSQAHNMHEARNHANANGGY----QNHGLQASTYHSHLGDRGETGD 252
           AETWNS   +QD  GS            N NGG      N+G+Q+S Y    G+R E GD
Sbjct: 263 AETWNSPNMRQDARGS------------NENGGSSYHNNNNGMQSSRYQ---GERVEEGD 307

Query: 253 CSGKQWGSISSNQASQRPLAIQ 274
           CSG+   SISSN+ASQR LAIQ
Sbjct: 308 CSGQLRVSISSNEASQRRLAIQ 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527210|ref|XP_003532205.1| PREDICTED: nuclear transcription factor Y subunit A-1-like isoform 2 [Glycine max]

 Score =  309 bits (792), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 166/240 (69%), Positives = 187/240 (77%), Gaps = 4/240 (1%)

Query: 20  NHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQP 79
           NH Q+ Q +Q  AS+ P++R+EC TQ PQLELVGHSIAC++NPYQDPYYGGMMAAYGHQ 
Sbjct: 97  NH-QEQQGMQHTASSPPSMREECLTQTPQLELVGHSIACSTNPYQDPYYGGMMAAYGHQQ 155

Query: 80  VGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLH 139
           +GY  F+GMPHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KLIK RKPYLH
Sbjct: 156 LGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLH 215

Query: 140 ESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAET 199
           ESRHQHAMRRARG+GGRFAKKT D    N   K   +G     S SSSGSEP+ SDSAET
Sbjct: 216 ESRHQHAMRRARGTGGRFAKKT-DGEGSNHLGKEKDNGTDSVQSISSSGSEPLHSDSAET 274

Query: 200 WNSSASQQDVGGSQAHN-MHEARNHANANGGYQNH-GLQASTYHSHLGDRGETGDCSGKQ 257
           WNS   QQD   S+ HN   EA ++ N +G Y NH GLQ+S YHS  G+R E  DCSG+Q
Sbjct: 275 WNSPNMQQDARASKVHNSRFEAPSYQNGSGSYHNHNGLQSSVYHSSSGERVEERDCSGQQ 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460371|ref|XP_003600467.1| Nuclear transcription factor Y subunit [Medicago truncatula] gi|355489515|gb|AES70718.1| Nuclear transcription factor Y subunit [Medicago truncatula]

 Score =  309 bits (792), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 174/262 (66%), Positives = 197/262 (75%), Gaps = 24/262 (9%)

Query: 17  HAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYG 76
            +GN+GQ+ Q +Q  AS+   IR+EC TQ PQLELVGHSIACA+NPYQDPYYGGMMAAY 
Sbjct: 108 QSGNYGQE-QGMQNTASSA-VIREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYP 165

Query: 77  HQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKP 136
           HQP+GYP F+G+PHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KLIK RKP
Sbjct: 166 HQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKP 225

Query: 137 YLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDS 196
           YLHESRHQHA+RRARG+GGRFAKKTD  + G   K  G   +  S S SSSGSE +PSDS
Sbjct: 226 YLHESRHQHALRRARGTGGRFAKKTDGEASG---KDNGSGPVLSSQSISSSGSELLPSDS 282

Query: 197 AETWNSSASQQDVGGSQAHNMHEARNHANANGGY----QNHGLQASTYHSHLGDRGETGD 252
           AETWNS   +QD  GS            N NGG      N+G+Q+S Y    G+R E GD
Sbjct: 283 AETWNSPNMRQDARGS------------NENGGSSYHNNNNGMQSSRYQ---GERVEEGD 327

Query: 253 CSGKQWGSISSNQASQRPLAIQ 274
           CSG+   SISSN+ASQR LAIQ
Sbjct: 328 CSGQLRVSISSNEASQRRLAIQ 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746308|emb|CBI16364.3| unnamed protein product [Vitis vinifera]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 165/258 (63%), Positives = 191/258 (74%), Gaps = 6/258 (2%)

Query: 19  GNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQ 78
           GN+GQ++QN+Q  A  +     EC TQPPQLELVGHSIACASNPYQDPYYGGMM AYG Q
Sbjct: 53  GNYGQEHQNLQHIAPNIQIGSSECLTQPPQLELVGHSIACASNPYQDPYYGGMMTAYGPQ 112

Query: 79  PVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYL 138
           P+ +P  +GM  ARMPLPLEM Q+PVYVN KQY GILRRRQ+RAKAELEKKLIKVRKPYL
Sbjct: 113 PLVHPHLLGMHEARMPLPLEMTQDPVYVNPKQYHGILRRRQSRAKAELEKKLIKVRKPYL 172

Query: 139 HESRHQHAMRRARGSGGRFAKKT-DDASKGNSEKKGGGSG-IRPSLSGSSSGSEPVPSDS 196
           HESRHQHA+RRAR SGGRFAKK+  +ASK  SE+K    G      S SSSGSE +PSDS
Sbjct: 173 HESRHQHALRRARSSGGRFAKKSAAEASKHASEEKVTALGSAPSPQSVSSSGSERLPSDS 232

Query: 197 AETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGK 256
            ETWNSS+ QQ+  G QAH+ HE   + N +G YQ+ G   +T HSH  +RGE      +
Sbjct: 233 TETWNSSSRQQEARGPQAHDTHEPPKYKNGSGYYQSPGDSQTTNHSHTSERGE----EDQ 288

Query: 257 QWGSISSNQASQRPLAIQ 274
           QW S S++Q SQRP A Q
Sbjct: 289 QWKSFSADQGSQRPHAFQ 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450972|ref|XP_004143236.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Cucumis sativus] gi|449482511|ref|XP_004156306.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Cucumis sativus]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/256 (65%), Positives = 191/256 (74%), Gaps = 6/256 (2%)

Query: 22  GQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVG 81
           GQ   N Q   SA P +   C TQPPQLELVGHSIACASNPYQDPYY G+MAAYGHQP G
Sbjct: 89  GQVQHNCQHAVSAAPIVHSGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-G 147

Query: 82  YPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHES 141
           YP F+GMPHARM LPLE+ QEPV+VNAKQY GILRRRQARAKAE+E KLIKVRKPYLHES
Sbjct: 148 YPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHES 207

Query: 142 RHQHAMRRARGSGGRFAKKTDDASKGNSEK-KGGGSG-IRPSLSGSSSGSEPVPSDSAET 199
           RHQHAMRRARGSGGRFAKK +  S G++ K K  GSG    S S  SSGS+  P   AET
Sbjct: 208 RHQHAMRRARGSGGRFAKKNETNSLGSTMKDKDSGSGQAISSHSAGSSGSDAAPCALAET 267

Query: 200 WNSSASQQDVGGSQAHNMHEARNHANANGGYQNH-GLQASTYHSHLGDRGETGDCSGKQW 258
           WNSS  QQ+   +Q H  +EAR++ N +  + N+   QAS+Y    G+RG+ GDCSG+Q 
Sbjct: 268 WNSSNGQQE-SRTQLHEAYEARSYMNGSSQFHNYSSFQASSYGLRSGERGDDGDCSGQQ- 325

Query: 259 GSISSNQASQRPLAIQ 274
            SIS NQA+QR LAI+
Sbjct: 326 RSISENQAAQRRLAIK 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.496	0.448	0.664	2e-55
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.503	0.507	0.657	3.3e-47
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.572	0.826	0.432	1.5e-26
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.346	0.278	0.606	1.4e-25
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.5	0.691	0.442	1.4e-25
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.335	0.298	0.578	3.3e-24
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.510	0.454	0.414	5.3e-24
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.354	0.295	0.551	8.7e-24
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.332	0.338	0.518	7.2e-20
DICTYBASE|DDB_G0282697	517	nfyA "putative CCAAT-binding t	0.638	0.338	0.346	2e-19

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
 Identities = 97/146 (66%), Positives = 110/146 (75%)

Query:    18 AGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACAS-NPYQDPYYGGMMAAYG 76
             AG++  KNQ         P         PP  +LVGH++  AS NPYQDPYY G+M AYG
Sbjct:    90 AGDYSDKNQESLHHGITQP---------PPHPQLVGHTVGWASSNPYQDPYYAGVMGAYG 140

Query:    77 HQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKP 136
             H P+G+  + GMPH+RMPLP EMAQEPV+VNAKQY  ILRRRQARAKAELEKKLIK RKP
Sbjct:   141 HHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKP 200

Query:   137 YLHESRHQHAMRRARGSGGRFAKKTD 162
             YLHESRHQHAMRR RG+GGRFAKKT+
Sbjct:   201 YLHESRHQHAMRRPRGTGGRFAKKTN 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 94/143 (65%), Positives = 113/143 (79%)

Query:    20 NHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQP 79
             NHG +  +    A ++  + D+   QPP  ELVGH IAC  NPYQDPYYGG+M AYGHQ 
Sbjct:    95 NHGMEGNDP---ALSIRNMHDQPLVQPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQ 149

Query:    80 VGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLH 139
             +G+  ++GMP  R  LPL+MAQEPVYVNAKQY GILRRR+ARAKAELE+K+I+ RKPYLH
Sbjct:   150 LGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLH 209

Query:   140 ESRHQHAMRRARGSGGRFAKKTD 162
             ESRH+HAMRRAR SGGRFAKK++
Sbjct:   210 ESRHKHAMRRARASGGRFAKKSE 232

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 71/164 (43%), Positives = 95/164 (57%)

Query:     6 MLTKNHRLPHLHAGNHGQKNQNVQQGASAMPTIRD-ECFTQPPQLELVG--HSIACASNP 62
             M +  H L   + G+H ++ Q        +P+ R+ E           G  +S+A    P
Sbjct:     1 MTSSIHELSD-NIGSHEKQEQRDSHFQPPIPSARNYESIVTSLVYSDPGTTNSMAPGQYP 59

Query:    63 YQDPYYGGMMAAYGHQPVG-YPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQAR 121
             Y DPYY  + A       G + Q +G+    +PLP +  +EPV+VNAKQY GILRRRQ+R
Sbjct:    60 YPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSR 119

Query:   122 AKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDD 163
             A+ E + K+IK RKPYLHESRH HA+RR RG GGRF  AKK D+
Sbjct:   120 ARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDE 163

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 60/99 (60%), Positives = 73/99 (73%)

Query:    63 YQDPYYGGMMAA-YGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQ 119
             Y DP+YGG++AA Y  Q P   PQ V M   R+PLP E+ + +PV+VNAKQY  I+RRRQ
Sbjct:   137 YADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQ 196

Query:   120 ARAKAELEKKLIKVRK-PYLHESRHQHAMRRARGSGGRF 157
              RAK E + KLI+ RK PYLHESRH HA++R RGSGGRF
Sbjct:   197 QRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRF 235

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 66/149 (44%), Positives = 86/149 (57%)

Query:    20 NHGQKNQNVQQGASAMPTIR--DECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGH 77
             +H +K +   Q    +P+ R  +   T     E + H +     PY DPYY  + A   +
Sbjct:    14 SHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGLY----PYPDPYYRSVFAQQAY 69

Query:    78 QPVGYP----QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKV 133
              P  YP    Q +GM    +PL  +  +EPV+VNAKQY GILRRRQ+RAK E   + IK 
Sbjct:    70 LPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKA 129

Query:   134 RKPYLHESRHQHAMRRARGSGGRF--AKK 160
             +KPY+HESRH HA+RR RG GGRF  AKK
Sbjct:   130 KKPYMHESRHLHAIRRPRGCGGRFLNAKK 158

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 55/95 (57%), Positives = 70/95 (73%)

Query:    66 PYYGGMMA-AYGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARA 122
             P++ G ++  Y  Q  V +PQ  G+  +RMPLP  + + EP++VNAKQY  ILRRR+ RA
Sbjct:   132 PHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRA 191

Query:   123 KAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 157
             K E + KLIKVRKPYLHESRH HA++R RGSGGRF
Sbjct:   192 KLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRF 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 63/152 (41%), Positives = 91/152 (59%)

Query:    20 NHGQKNQNVQQGASAMPTI-RDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAA-YGH 77
             N G+  +N  +  +    + +D  F  P   + +  S+ CA    +  ++ G +A  Y  
Sbjct:    96 NLGKPIENYTKSITTSSMVSQDSVFPAPTSGQ-ISWSLQCA----ETSHFNGFLAPEYAS 150

Query:    78 QPVGYP--QFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVR 134
              P   P  + +G+  +R+PLP  + + EP++VNAKQY  ILRRR+ RAK E + KLIK R
Sbjct:   151 TPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCR 210

Query:   135 KPYLHESRHQHAMRRARGSGGRF--AKKTDDA 164
             KPYLHESRH HA++RARGSGGRF   KK  ++
Sbjct:   211 KPYLHESRHLHALKRARGSGGRFLNTKKLQES 242

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 59/107 (55%), Positives = 75/107 (70%)

Query:    63 YQDPYYGGMM-AAYGHQP-VGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQ 119
             Y DP++GG+M AAY  Q  +  PQ       R+PLP ++ + EPV+VNAKQ+  I+RRRQ
Sbjct:   135 YADPHFGGLMPAAYLPQATIWNPQMT-----RVPLPFDLIENEPVFVNAKQFHAIMRRRQ 189

Query:   120 ARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDA 164
              RAK E + KLIK RKPYLHESRH HA++R RGSGGRF   KK  ++
Sbjct:   190 QRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQES 236

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 56/108 (51%), Positives = 71/108 (65%)

Query:    61 NPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEP---VYVNAKQYMGILRR 117
             +P+ + YYG +++AYG Q             R+ +PL+M  E    +YVN+KQY GI+RR
Sbjct:   100 HPHVEQYYG-VVSAYGSQ---------RSSGRVMIPLKMETEEDGTIYVNSKQYHGIIRR 149

Query:   118 RQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAK-KTDDA 164
             RQ+RAKAE   KL + RKPY+H SRH HAMRR RGSGGRF   KT DA
Sbjct:   150 RQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTKTADA 194

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0282697 nfyA "putative CCAAT-binding transcription factor, chain A" [Dictyostelium discoideum (taxid:44689)]

 Score = 239 (89.2 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 63/182 (34%), Positives = 80/182 (43%)

Query:    89 PHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMR 148
             PH       E+ +EP+YVNAKQY  IL+RR ARAK E E KL K RK Y HESRHQHA+R
Sbjct:   216 PHMLYARMAEIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIR 275

Query:   149 RARGSGGRFAKKTDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETWNSSASQQD 208
             R RG GGRF  K D A                                    N++ +  +
Sbjct:   276 RQRGCGGRFLTKADQAKLDAQNAANAAAAAANPNASSTSTTTSNIT------NNNNNNNN 329

Query:   209 VGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQ 268
                +  +N +   N  N +GG       AS+      D     D +  +  S S NQ+S 
Sbjct:   330 NNNTNNNNNNNNTN-VNGSGGSGGSNKIASSDDDIENDVENDSDSANIKNNSNSPNQSSS 388

Query:   269 RP 270
              P
Sbjct:   389 SP 390

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q945M9	NFYA9_ARATH	No assigned EC number	0.5152	0.7627	0.6897	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024601001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	7e-32
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	3e-31
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	2e-09

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  111 bits (280), Expect = 7e-32
 Identities = 47/57 (82%), Positives = 49/57 (85%)

Query: 101 QEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 157
            EP+YVNAKQY  ILRRRQARAK E E KLIK RKPYLHESRH+HAMRR RGSGGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  110 bits (277), Expect = 3e-31
 Identities = 46/62 (74%), Positives = 48/62 (77%)

Query: 99  MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFA 158
             +EPVYVNAKQY  ILRRRQARAK E + KL K RKPYLHESRH HAMRR RGSGGRF 
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 159 KK 160
             
Sbjct: 61  NT 62

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 100 AQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAK 159
           + +P YVNAKQ   I +R   R    L+  +   R  YLHESRH+HAM R R   GRF  
Sbjct: 157 SFQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLT 214

Query: 160 KTD 162
            ++
Sbjct: 215 ASE 217

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.79

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=1.2e-42  Score=320.96  Aligned_cols=113  Identities=54%  Similarity=0.827  Sum_probs=104.0

Q ss_pred             cccCccccccC-CCCCCCCcccccc---ccCCCCCC--CCcccCCCC-CCCCCCcCCCC-CCeeechhhhhHHHHHHHHH
Q 024014           50 ELVGHSIACAS-NPYQDPYYGGMMA---AYGHQPVG--YPQFVGMPH-ARMPLPLEMAQ-EPVYVNAKQYMGILRRRQAR  121 (274)
Q Consensus        50 el~g~s~a~~~-~py~Dpyygg~~a---aYg~q~~~--~p~~~G~~~-aR~pLP~e~~e-ePvyVNaKQY~rIlrRRq~R  121 (274)
                      +.+.+..++++ +||.+|+|+|++.   +|++|+..  .+++.||.+ .|+|||.++.| ||||||||||+||||||++|
T Consensus       124 ~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~R  203 (307)
T KOG1561|consen  124 TASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQAR  203 (307)
T ss_pred             ccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHHHH
Confidence            44667666665 7999999999999   89999885  678899988 99999999866 99999999999999999999


Q ss_pred             HHHHHhhhhhhcCCCcchhchhHHHhhcCCCCCCcccccCC
Q 024014          122 AKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD  162 (274)
Q Consensus       122 aK~e~e~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~k~e  162 (274)
                      ||||+++||+|.||||||||||+|||||+||+|||||+++|
T Consensus       204 aKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~  244 (307)
T KOG1561|consen  204 AKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKE  244 (307)
T ss_pred             hhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhh
Confidence            99999999999999999999999999999999999999988

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=8.1e-37  Score=228.16  Aligned_cols=62  Identities=74%  Similarity=1.065  Sum_probs=60.1

Q ss_pred             CCCCCeeechhhhhHHHHHHHHHHHHHHhhhhhhcCCCcchhchhHHHhhcCCCCCCccccc
Q 024014           99 MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKK  160 (274)
Q Consensus        99 ~~eePvyVNaKQY~rIlrRRq~RaK~e~e~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~k  160 (274)
                      ++++|||||||||++|||||++|||+|+++++++.||||||||||+|||+|+||+|||||++
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=1e-34  Score=214.54  Aligned_cols=57  Identities=79%  Similarity=1.182  Sum_probs=56.2

Q ss_pred             CCCeeechhhhhHHHHHHHHHHHHHHhhhh-hhcCCCcchhchhHHHhhcCCCCCCcc
Q 024014          101 QEPVYVNAKQYMGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF  157 (274)
Q Consensus       101 eePvyVNaKQY~rIlrRRq~RaK~e~e~kl-~k~rk~YlHESRH~HAm~R~RG~gGRF  157 (274)
                      |+|||||||||++|||||++|||+|+++++ ++.||||||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.79  E-value=4.1e-20  Score=166.53  Aligned_cols=61  Identities=43%  Similarity=0.551  Sum_probs=55.8

Q ss_pred             CCCCeeechhhhhHHHHHHHHHHHHHHhhhhhhcCCCcchhchhHHHhhcCCCCCCcccccCC
Q 024014          100 AQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD  162 (274)
Q Consensus       100 ~eePvyVNaKQY~rIlrRRq~RaK~e~e~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~k~e  162 (274)
                      .++|.|||+|||++|++||-+|++++.  +++-.|..|||||||+|||+|+|+++||||+++|
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~~ylHesrhkham~r~r~ptgrfLtasE  217 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASE  217 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHH--HhhhhhhhccccchhhhhhhcccCCCcceecHHh
Confidence            578999999999999999999999865  4566677799999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		1e-15
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		3e-13

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 101 QEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 157
           +EP+YVNAKQY  IL+RRQARAK E E K+ K R+ YLHESRH+HAM R RG GGRF
Sbjct: 2   EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRF 58

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 101 QEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRF 157
           + P+YVNAKQ+  IL+RR AR K E + +L  K RKPYLHESRH HAMRR RG GGRF
Sbjct: 2   ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRF 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=7.6e-37  Score=228.49  Aligned_cols=62  Identities=61%  Similarity=0.978  Sum_probs=58.5

Q ss_pred             CCCeeechhhhhHHHHHHHHHHHHHHhhhhh-hcCCCcchhchhHHHhhcCCCCCCcccccCC
Q 024014          101 QEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRFAKKTD  162 (274)
Q Consensus       101 eePvyVNaKQY~rIlrRRq~RaK~e~e~kl~-k~rk~YlHESRH~HAm~R~RG~gGRFl~k~e  162 (274)
                      |+|||||||||++|||||++|||+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            7999999999999999999999999999985 8899999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00