Citrus Sinensis ID: 024030

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccccccccccccccccccHcccccccccHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEc
Coil and Loop (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMmalcpgldecSLAIYLSGFQQAIIGLGTLVMMpvignlsdqygrkamltlpltlsiIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLkddvpndddddltrpiiteetegvnqnesnspvkipvckkipsIRDLICLLRSSVTLSQAAVVAFFSGlseggmqaSFLVYI
Flexible Loop (DISEMBL)
mgmekeikTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIiteetegvnqnesnspvkipvckKIPSIRDLICLLRSSVTLSQAAVVAFFSGlseggmqasFLVYI
Low Complexity Region (SEG)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMltlpltlsiiplailaYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKddvpndddddLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI
Disordered region (IsUnstruct)
*******KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDV****************************VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY*
Disordered Region (DISOPRED)
***********HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKD******************************VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI
Disordered Region (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETE*********PVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI
Disordered Region (DISPRO)
*GMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVP********R********GVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
P70187	490	Hippocampus abundant tran	yes	no	0.809	0.451	0.242	2e-07
Q96MC6	490	Hippocampus abundant tran	yes	no	0.809	0.451	0.242	2e-07
Q8CIA9	507	Hippocampus abundant tran	no	no	0.725	0.390	0.246	6e-06
Q5SR56	506	Hippocampus abundant tran	no	no	0.728	0.393	0.247	3e-05
P02980	401	Tetracycline resistance p	yes	no	0.589	0.401	0.240	4e-05
A4IF94	502	Hippocampus abundant tran	no	no	0.728	0.396	0.247	4e-05
B2RYH9	507	Hippocampus abundant tran	no	no	0.410	0.220	0.260	7e-05
P71678	518	MFS-type drug efflux tran	yes	no	0.311	0.164	0.360	0.0001
C6DTH3	518	MFS-type drug efflux tran	yes	no	0.311	0.164	0.360	0.0001
A5WM93	518	MFS-type drug efflux tran	yes	no	0.311	0.164	0.360	0.0001

>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 112/268 (41%), Gaps = 47/268 (17%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLVYI 273
                  +  F S L E G  +SF +Y+
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYL 271

Mus musculus (taxid: 10090)

>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 112/268 (41%), Gaps = 47/268 (17%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLVYI 273
                  +  F S L E G  +SF +Y+
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYL 271

Homo sapiens (taxid: 9606)

>sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 25/223 (11%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++         + Y+
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINP-----WWYF 137

Query: 112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
            + +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS  
Sbjct: 138 GMISVSGVF---SVTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSAN 194

Query: 171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCK 230
                  +V+ L A     F+   VP    + + RP          Q +  + +K  V K
Sbjct: 195 YGDSLVVLVATLVALLDICFILIAVPESLSEKI-RPASWGAQISWKQADPFASLK-KVGK 252

Query: 231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
              S   LIC            +  F S L E G  +SF +Y+
Sbjct: 253 D--STVLLIC------------ITVFLSYLPEAGQYSSFFLYL 281

Mus musculus (taxid: 10090)

>sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 23/222 (10%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 81  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 138

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 139 SVSGVFSVTF-----SVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 193

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 194 GDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGKD 251

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
             S   LIC            +  F S L E G  +SF +Y+
Sbjct: 252 --STVLLIC------------ITVFLSYLPEAGQYSSFFLYL 279

Homo sapiens (taxid: 9606)

>sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 18/179 (10%)

Query: 58  AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLT 117
           A+  L  ++  P +G +SD++GR+ +L L L  + +   +LA+  ++   Y    L  +T
Sbjct: 48  ALYALMQVIFAPWLGKMSDRFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRLLSGIT 107

Query: 118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAFQ 174
                G+   +A + +AD  S  QR   FG L        + G +   F   +S  S F 
Sbjct: 108 -----GATGAVAASVIADTTSASQRVKWFGWLGASFGLGLIAGPIIGGFAGEISPHSPFF 162

Query: 175 AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP 233
            A +++++    +  + ++     D+ D         TE   + +SNS V I + K +P
Sbjct: 163 IAALLNIVTFLVVMFWFRETKNTRDNTD---------TEVGVETQSNS-VYITLFKTMP 211

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 23/222 (10%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 78  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 135

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 136 SISGVFSVTFS-----VIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 190

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 191 GDSLVVLVATVVALLDICFILLAVPESLPEKM-RPLSWGARISWKQADPFASLK-KVGKD 248

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
             S   LIC            +  F S L E G  +SF +Y+
Sbjct: 249 --STILLIC------------ITVFLSYLPEAGQYSSFFLYL 276

Bos taurus (taxid: 9913)

>sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++   
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFGMI 140

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS+ 
Sbjct: 141 SVSGVFSVTF-----SVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSSN 194

Rattus norvegicus (taxid: 10116)

>sp|P71678|MFS55_MYCTU MFS-type drug efflux transporter P55 OS=Mycobacterium tuberculosis GN=Rv1410c PE=1 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 62  LGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVC 121
           LG +  MP++G  SD++GRK ML + L   II   + A       F+   A RT+   V 
Sbjct: 56  LGYIAAMPLLGRASDRFGRKLMLQVSLAGFIIGSVVTALAGHFGDFHMLIAGRTIQG-VA 114

Query: 122 EGSINCLALAYVADNISERQRASAFG 147
            G++  + LA  AD  S+R RA   G
Sbjct: 115 SGALLPITLALGADLWSQRNRAGVLG 140

Confers resistance to ethidium bromide. Requires lprG lipoprotein for normal function.

Mycobacterium tuberculosis (taxid: 1773)

>sp|C6DTH3|MFS55_MYCTK MFS-type drug efflux transporter P55 OS=Mycobacterium tuberculosis (strain KZN 1435 / MDR) GN=TBMG_02570 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 62  LGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVC 121
           LG +  MP++G  SD++GRK ML + L   II   + A       F+   A RT+   V 
Sbjct: 56  LGYIAAMPLLGRASDRFGRKLMLQVSLAGFIIGSVVTALAGHFGDFHMLIAGRTIQG-VA 114

Query: 122 EGSINCLALAYVADNISERQRASAFG 147
            G++  + LA  AD  S+R RA   G
Sbjct: 115 SGALLPITLALGADLWSQRNRAGVLG 140

Mycobacterium tuberculosis (strain KZN 1435 / MDR) (taxid: 478434)

>sp|A5WM93|MFS55_MYCTF MFS-type drug efflux transporter P55 OS=Mycobacterium tuberculosis (strain F11) GN=TBFG_11439 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 62  LGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVC 121
           LG +  MP++G  SD++GRK ML + L   II   + A       F+   A RT+   V 
Sbjct: 56  LGYIAAMPLLGRASDRFGRKLMLQVSLAGFIIGSVVTALAGHFGDFHMLIAGRTIQG-VA 114

Query: 122 EGSINCLALAYVADNISERQRASAFG 147
            G++  + LA  AD  S+R RA   G
Sbjct: 115 SGALLPITLALGADLWSQRNRAGVLG 140

Mycobacterium tuberculosis (strain F11) (taxid: 336982)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
224105113	442	predicted protein [Populus trichocarpa]	0.981	0.606	0.656	9e-97
225428113	439	PREDICTED: hippocampus abundant transcri	0.974	0.605	0.667	4e-96
255539072	442	tetracycline transporter, putative [Rici	0.978	0.604	0.619	4e-92
224083179	447	predicted protein [Populus trichocarpa]	0.974	0.595	0.602	4e-89
118486381	450	unknown [Populus trichocarpa]	0.978	0.593	0.594	3e-86
147812165	494	hypothetical protein VITISV_019346 [Viti	0.974	0.538	0.521	7e-85
356574133	443	PREDICTED: hippocampus abundant transcri	0.952	0.586	0.609	2e-84
147804798	408	hypothetical protein VITISV_038996 [Viti	0.978	0.654	0.605	8e-84
225459764	442	PREDICTED: hippocampus abundant transcri	0.978	0.604	0.601	1e-83
356509042	432	PREDICTED: hippocampus abundant transcri	0.974	0.615	0.563	2e-82

>gi|224105113|ref|XP_002313691.1| predicted protein [Populus trichocarpa] gi|222850099|gb|EEE87646.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 178/271 (65%), Positives = 219/271 (80%), Gaps = 3/271 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK    L HLFVTVFL  F ++MV+PA+TDVTM+A+CPG DECSLAIYL+GFQQA IG+
Sbjct: 1   MEK-FTELIHLFVTVFLSTFGSLMVLPAVTDVTMVAVCPGQDECSLAIYLTGFQQASIGM 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM+P+IGNLSDQYGRKA+LTLP+TLSIIPL ILAY R+  FFYAYYALRTLTAM+CE
Sbjct: 60  GTVVMLPLIGNLSDQYGRKALLTLPMTLSIIPLVILAYSRTTGFFYAYYALRTLTAMICE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSI+CLALAYVADN+ ERQR S FGIL G+ +A+ VCGTLAARFLST   FQ A ++SML
Sbjct: 120 GSIDCLALAYVADNVLERQRTSVFGILSGITTAALVCGTLAARFLSTALTFQVAALLSML 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YMR+FL++ +P    ++LT+PI+    +   Q++ + P K  V KKIPSI+ +I LL
Sbjct: 180 AAVYMRIFLEESLPQ--SENLTQPILKSGQDDHCQDDGDLPRKPMVSKKIPSIQAIISLL 237

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
           +SSVT SQAA+VAFF  LS GG+QAS + Y+
Sbjct: 238 KSSVTFSQAAIVAFFHSLSYGGLQASIMYYL 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428113|ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|297744560|emb|CBI37822.3| unnamed protein product [Vitis vinifera]

 Score =  357 bits (915), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 181/271 (66%), Positives = 214/271 (78%), Gaps = 5/271 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L+HLFVTV L  F+  +V+PAITDVTM ALCPG DECSLAIYLSGFQQAIIGL
Sbjct: 1   MEK-LAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM PVIGNLSD+YGRKA+LT+P+ LSIIPLAILAY R+ + FYAY+ +RTLTAMV E
Sbjct: 60  GTVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSINCLALAYVADNISE QRASAFG+L GV SA+FVCGTLAARFLST S FQ AT+VSM+
Sbjct: 120 GSINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVATLVSMI 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YMRVFLK+  P  D        + ++  G++ ++ NS  KI   KKIPS+ DLI LL
Sbjct: 180 ATVYMRVFLKETFPKGDSSQ----ALLKKEPGMSPDDGNSSEKIQTFKKIPSVGDLISLL 235

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
           +     SQAAVV FF+GL+EGG+QAS L ++
Sbjct: 236 KCRAAFSQAAVVVFFNGLAEGGLQASLLYFL 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539072|ref|XP_002510601.1| tetracycline transporter, putative [Ricinus communis] gi|223551302|gb|EEF52788.1| tetracycline transporter, putative [Ricinus communis]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 168/271 (61%), Positives = 214/271 (78%), Gaps = 4/271 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD+YGRKA+LT+P++L++IPLA LAY R+  FFYAYY ++TLTAMVCE
Sbjct: 60  GTLVMMPLVGNLSDKYGRKALLTIPMSLTVIPLATLAYSRTTYFFYAYYVMKTLTAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CLALAYVADN+ E +RASAFGIL G+ S++FVCGTL+ RFLST S FQ +  ++++
Sbjct: 120 GSVHCLALAYVADNVPEARRASAFGILSGIGSSAFVCGTLSTRFLSTASTFQVSASMAVV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YM+VFL+D +    D +LT PII+     V     NS     V + +PS+ D+ICLL
Sbjct: 180 AIVYMKVFLQDSI---VDKNLTTPIISNGKGKVYVQIENSSENEQVFRTMPSLEDMICLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
           +SSVT +QAA+VAFF  LSE G+ AS + Y+
Sbjct: 237 KSSVTFTQAAIVAFFINLSEVGLHASLMYYL 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083179|ref|XP_002306959.1| predicted protein [Populus trichocarpa] gi|222856408|gb|EEE93955.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 165/274 (60%), Positives = 211/274 (77%), Gaps = 8/274 (2%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
           K +  LSHLF+T+FL  F+ +MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGLGT
Sbjct: 2   KTLSGLSHLFITIFLHNFSAVMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP+IGN+SD+YGRKA+LT+PL+L I+P AILAY R+ +FFYAYY ++TL AMVCEGS
Sbjct: 62  LVMMPLIGNMSDKYGRKALLTVPLSLVIVPSAILAYSRTRNFFYAYYVVKTLIAMVCEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CLALAYVADN+ E +RASAFGIL G+ S++FVCG L+ RFLST S FQ +  V++ + 
Sbjct: 122 VPCLALAYVADNVPEGRRASAFGILSGIASSAFVCGNLSTRFLSTASTFQVSASVAIASL 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP-----VCKKIPSIRDLI 239
            YMR FL+D +    D+ LT PI+T   +   + +  +  +IP     + K  PS+ D++
Sbjct: 182 VYMRFFLQDSI---IDEQLTAPILTSNGKPKGKGKDYATNEIPSKNVQIFKSAPSLEDML 238

Query: 240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
           CLL+SSVTLSQAAVVAFF  L+E G+ AS L Y+
Sbjct: 239 CLLKSSVTLSQAAVVAFFYSLAEVGLHASLLYYL 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486381|gb|ABK95031.1| unknown [Populus trichocarpa]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 166/279 (59%), Positives = 212/279 (75%), Gaps = 12/279 (4%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLV MP+IGN+SD+YGRKA+LT+P++L I+P AILAY R+ +FFYAYY +RTL AMVCE
Sbjct: 60  GTLVTMPLIGNMSDKYGRKALLTVPMSLIIVPSAILAYSRTRNFFYAYYVVRTLMAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS+ CLALAYVADN+ E +RAS FGIL G+ S++FVCG L+ RFLST+S FQ + +V++ 
Sbjct: 120 GSVQCLALAYVADNVPESRRASTFGILSGIASSAFVCGNLSTRFLSTSSTFQVSALVAIA 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN-------ESNSPVK-IPVCKKIPS 234
           A  YMR FL++ +    D+ L+ PI+T +  G  +            P K + V K  PS
Sbjct: 180 ALVYMRFFLQESI---IDEQLSTPILTYKGNGKGKGKANAACFAHEIPSKNVQVFKSAPS 236

Query: 235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
           + D++CLL+SSVTLSQAAVVAFF  L+E G+ AS + Y+
Sbjct: 237 LEDMLCLLKSSVTLSQAAVVAFFYSLAEVGLHASLMYYL 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812165|emb|CAN70291.1| hypothetical protein VITISV_019346 [Vitis vinifera]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 181/347 (52%), Positives = 214/347 (61%), Gaps = 81/347 (23%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L+HLFVTV L  F+  +V+PAITDVTM ALCPG DECSLAIYLSGFQQAIIGL
Sbjct: 1   MEK-LAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM PVIGNLSD+YGRKA+LT+P+ LSIIPLAILAY R+ + FYAY+ +RTLTAMV E
Sbjct: 60  GTVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAF--------- 173
           GSINCLALAYVADNISE QRASAFG+L GV SA+FVCGTLAARFLST S F         
Sbjct: 120 GSINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVLVLIQSR 179

Query: 174 ---------------------QAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEET 212
                                Q AT+VSM+A  YMRVFLK+  P  D        + ++ 
Sbjct: 180 SSLVSFLVSELVXHVPTVFLSQVATLVSMIATVYMRVFLKETFPKGDSSQ----ALLKKE 235

Query: 213 EGVNQNESNSPVKIPVCKKIPSIRDLICLLR----------------------------- 243
            G++ ++ NS  KI   KKIPS+ DLI LL+                             
Sbjct: 236 PGMSPDDGNSSEKIQTFKKIPSVGDLISLLKCRFFMIIGFPNXSPFSIKRXMIPSDQSQF 295

Query: 244 -----------------SSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
                                 SQAAVV FF+GL+EGG+QAS L ++
Sbjct: 296 SCSLYVLTYQILRKTFCHRAAFSQAAVVVFFNGLAEGGLQASLLYFL 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574133|ref|XP_003555206.1| PREDICTED: hippocampus abundant transcript 1 protein-like [Glycine max]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/264 (60%), Positives = 203/264 (76%), Gaps = 4/264 (1%)

Query: 10  LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMP 69
           L HLFVT+F+ GF  ++V+PAITDVTM ALCPG D+CSLAIYLSGFQQA+ G+G++VM P
Sbjct: 7   LGHLFVTMFVSGFGGVIVLPAITDVTMAALCPGQDQCSLAIYLSGFQQAMAGVGSVVMTP 66

Query: 70  VIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA 129
           +IGNLSD+YGRKA+LTLPLT+S+IP  ILAY R   FFYAYY ++TL AM  EGS +CLA
Sbjct: 67  LIGNLSDRYGRKALLTLPLTVSVIPQVILAYSRDTQFFYAYYVVKTLAAMAGEGSFHCLA 126

Query: 130 LAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRV 189
           LAYVAD + + +R SAFGIL GV SASFV GTLAARFLST   FQ A+++SM+A  YMR+
Sbjct: 127 LAYVADKVPDGKRTSAFGILAGVGSASFVGGTLAARFLSTALTFQVASVLSMVALVYMRI 186

Query: 190 FLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS 249
           FLKD VP      L +P++ E  E  ++++S SP      KK+PS+ DLICLLR S T S
Sbjct: 187 FLKDSVPG---GALRQPLLKEVEEPCDEDDS-SPRATGTFKKLPSLGDLICLLRCSPTFS 242

Query: 250 QAAVVAFFSGLSEGGMQASFLVYI 273
           QAA+V+FF+ L++GG+ A  L Y+
Sbjct: 243 QAAMVSFFNSLADGGLMAVLLYYL 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804798|emb|CAN64703.1| hypothetical protein VITISV_038996 [Vitis vinifera]

 Score =  316 bits (809), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 164/271 (60%), Positives = 209/271 (77%), Gaps = 4/271 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L HLF+TVFL+ FAT MV+PAITDVTM ALCPG DECS+AIYL+GFQQ IIGL
Sbjct: 1   MEK-LSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGRDECSIAIYLTGFQQVIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD YGRKA+LT+P+ L+IIPLAILA+ RS +FFYAY+ L+TLT+MVCE
Sbjct: 60  GTLVMMPLVGNLSDMYGRKALLTIPMCLTIIPLAILAWSRSRNFFYAYFVLKTLTSMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CL LAYVADNI E +RASAFG+L GV S++FVCGTL+ARFL T+S FQ A  V+ +
Sbjct: 120 GSVHCLTLAYVADNIPEIRRASAFGVLSGVGSSAFVCGTLSARFLKTSSTFQVAASVAAV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YM++FL D V  D   D  R I+ E+   V   +  S    PV K +PS+ D++ LL
Sbjct: 180 AAVYMKLFLPDSVIKDGVLD--RAIL-EQKPCVIHLDGESAQDSPVFKSMPSLDDMLSLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
           ++S T ++AA+VAFFS L + G+  S + Y+
Sbjct: 237 QTSSTFTKAAIVAFFSNLGDVGLHTSLMYYL 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459764|ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|302141709|emb|CBI18912.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/271 (60%), Positives = 207/271 (76%), Gaps = 4/271 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L HLF+TVFL+ FAT MV+PAITDVTM ALCPG DECS+AIYL+GFQQ IIGL
Sbjct: 1   MEK-LSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGRDECSIAIYLTGFQQVIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD YGRKA+LT+P+ L+IIPLAILA+ RS +FFYAY+ L+TLT+MVCE
Sbjct: 60  GTLVMMPLVGNLSDMYGRKALLTIPMCLTIIPLAILAWSRSRNFFYAYFVLKTLTSMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CL LAYVADNI E +RASAFG+L GV S++FVCGTL+ARFL T+S FQ A  V+ +
Sbjct: 120 GSVHCLTLAYVADNIPEIRRASAFGVLSGVGSSAFVCGTLSARFLKTSSTFQVAASVAAV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YM++FL D V  D   D     I E+   V   +  S    PV K +PS+ D++ LL
Sbjct: 180 AAVYMKLFLPDSVIKDGVLDRA---ILEQKPCVIHLDGESAQDSPVFKSMPSLDDMLSLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
           ++S T ++AA+VAFFS L + G+  S + Y+
Sbjct: 237 QTSSTFTKAAIVAFFSNLGDVGLHTSLMYYL 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509042|ref|XP_003523261.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/268 (56%), Positives = 202/268 (75%), Gaps = 2/268 (0%)

Query: 6   EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTL 65
           ++  LSHLF+TVFL  F+  MVVPAITDVTM ALCPG DECSLAIY++GFQQA+IGLGTL
Sbjct: 3   KLYGLSHLFMTVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGTL 62

Query: 66  VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI 125
           VMMP++GNLSD+YGRKA+LTLP+ L+IIP+ ILAY R+  FFY YY  + L +MVCEGS+
Sbjct: 63  VMMPLLGNLSDKYGRKAILTLPMILTIIPVGILAYSRTKKFFYVYYVFKILISMVCEGSV 122

Query: 126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAA 185
            CLALAYVADN+ E  R++ FGIL G+ SA+FVC TL+ARFLS+   FQ +T+++++ A 
Sbjct: 123 PCLALAYVADNVPESGRSTVFGILSGIGSAAFVCATLSARFLSSALTFQVSTLIAVIGAL 182

Query: 186 YMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS 245
           YM+ FL+D V   DD  L  PII++    +++   N   K  + K + SI+DL   L SS
Sbjct: 183 YMQFFLRDSV--IDDKHLYTPIISQGNPIISKVNGNLESKKHLLKALRSIKDLTSFLNSS 240

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLVYI 273
           +T++QAA+VAFF+ L++ G+  S L ++
Sbjct: 241 LTINQAAIVAFFNSLADVGLHGSLLYFL 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2039450	456	AT2G16990 "AT2G16990" [Arabido	0.992	0.594	0.446	1.6e-54
TAIR|locus:2039440	461	AT2G16980 [Arabidopsis thalian	0.959	0.568	0.447	1.3e-50
TAIR|locus:2039430	446	MEE15 "maternal effect embryo	0.937	0.573	0.379	9.6e-41
WB|WBGene00020798	550	T25D3.4 [Caenorhabditis elegan	0.860	0.427	0.243	8.1e-05
TAIR|locus:2157592	282	AT5G42210 "AT5G42210" [Arabido	0.336	0.326	0.315	0.00062

TAIR|locus:2039450 AT2G16990 "AT2G16990" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 125/280 (44%), Positives = 166/280 (59%)

Query:     3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIG 61
             ME  I  L H+  TVFL  FA  MVVP ITDVT+ A+C G D+ CSLA+YL+GFQQ  IG
Sbjct:     1 MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIG 60

Query:    62 LGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVC 121
             +GT++MMPVIGNLSD+YG K +                YRR I FFY +Y  + LT+MVC
Sbjct:    61 MGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVC 120

Query:   122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSM 181
             EG+++CLA AYVA NI    R SAFGIL G+ + + + GTL ARFL     FQ + I   
Sbjct:   121 EGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFF 180

Query:   182 LAAAYMRVFLKXXXXXXXXXXLTRPIITEET-EGVNQNE------SNSPVKIPVC-KKIP 233
             +   YMRVFLK          L      +E  + +N         ++ P+K  V  KK  
Sbjct:   181 VGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYS 240

Query:   234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
             S++D+I L+++S    QA VV FFS  S+ GM+++FL ++
Sbjct:   241 SLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFL 280

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2039440 AT2G16980 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 123/275 (44%), Positives = 159/275 (57%)

Query:    10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGLGTLVMM 68
             L HL VTVFL G A  ++ P +TDVT+ A+C GLD+ CSLA+YL+G QQ  +G+GT+VMM
Sbjct:     9 LRHLLVTVFLSGLAEYLIRPVMTDVTVAAVCSGLDDSCSLAVYLTGVQQVTVGMGTMVMM 68

Query:    69 PVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCEGSINCL 128
             PVIGNLSD+YG KAM                YRR  +FFYA+Y ++TL  MVC+G+I+CL
Sbjct:    69 PVIGNLSDRYGIKAMLTLPMCLSVLPPAILGYRRDTNFFYAFYVIKTLFDMVCQGTIDCL 128

Query:   129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMR 188
             A AYVA N+   +R S FGIL GV S S VC +L+ARFLS  S FQ A I   +   YMR
Sbjct:   129 ANAYVAKNVHGTKRISMFGILAGVSSISGVCASLSARFLSIASTFQVAAISLFIGLVYMR 188

Query:   189 VFLKXXXXXXXXXXLTRPIITEETEGVNQNES----------NSPVKIPVCK-KIPSIRD 237
             VFLK                    + V+              ++P K  V   K  S +D
Sbjct:   189 VFLKERLQDADDDDEADSGGCRSHQEVHNGGDLKMLTEPILRDAPTKTHVFNSKYSSWKD 248

Query:   238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY 272
             ++ L+ +S  L QA VV FF+  SE G + S L+Y
Sbjct:   249 MVSLINNSTILIQALVVTFFATFSESG-RGSALMY 282

GO:0005215 "transporter activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2039430 MEE15 "maternal effect embryo arrest 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 107/282 (37%), Positives = 147/282 (52%)

Query:     4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGL 62
             E  +  L HL  TVFL GF+  +V P +TDVT+ A+C GL+E CSLA+YL+G +Q  +GL
Sbjct:     3 EYRLGELRHLLTTVFLSGFSEFLVKPVMTDVTVAAVCSGLNETCSLAVYLTGVEQVTVGL 62

Query:    63 GTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCE 122
             GT+VMMPVIGNLSD+YG K +                YRR  +FFYA+Y  + L  M   
Sbjct:    63 GTMVMMPVIGNLSDRYGIKTLLTLPMCLSILPPAILAYRRDTNFFYAFYITKILFDM--- 119

Query:   123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
                        A N+  R+R S FG+L GV S S VC T +AR L   S FQ A I    
Sbjct:   120 -----------AKNVCGRKRISMFGVLAGVRSISGVCATFSARLLPIASIFQVAAISFFF 168

Query:   183 AAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNE---------SNSPVKIPVC--KK 231
                YMRVFLK                T      +  +          ++P KI +    K
Sbjct:   169 GLVYMRVFLKERLHDDDEDDCDEDDNTSGRNHHDGGDLTMLAEPILRDAPTKIHIVLNTK 228

Query:   232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
               S++D++ L+++S  L Q  VV FF+  ++ GMQ++FL ++
Sbjct:   229 YSSLKDMVSLIKNSTILVQTLVVTFFATFAQSGMQSAFLYFL 270

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

WB|WBGene00020798 T25D3.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 122 (48.0 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 66/271 (24%), Positives = 112/271 (41%)

Query:     9 TLSHLFVTVFLWGFAT-MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVM 67
             ++SH  V +FL  FA  ++ VP I    +    P     +    ++G    + GL + + 
Sbjct:    74 SVSHALVVIFLEYFAWGLLTVPVIN--VLAETFP-----TNKFLMNGLVLGVKGLLSFLS 126

Query:    68 MPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCEGSIN- 126
              P++G LSD +GRKA                     IS ++ Y++L +L+ +    S+  
Sbjct:   127 APLVGALSDVWGRKAFLILTVLCTCMPIPCL----KISPWW-YFSLFSLSGLF---SVTF 178

Query:   127 CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST----TSAFQAATIVSML 182
              + LAYVAD   + +R+SA+G++    +AS V       ++S     +     ATIVS+ 
Sbjct:   179 SVILAYVADITDKSERSSAYGLVSATFAASLVTSPALGAYISEVYGDSLVVLLATIVSVA 238

Query:   183 AAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
                ++ +F+                    T  V+Q   N            S+R    + 
Sbjct:   239 DVIFIVLFVPESLPSR-----------RNTGSVSQITPNEVFNWQSADPFGSLR---IVW 284

Query:   243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
                + L Q A + F S L E G  + F VY+
Sbjct:   285 EDKLVL-QLATIVFLSYLPESGQFSCFFVYL 314

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2157592 AT5G42210 "AT5G42210" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00062, P = 0.00062
 Identities = 30/95 (31%), Positives = 48/95 (50%)

Query:   179 VSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238
             + +L+  YMR+FL           L  PI+  E       E     +  + + I  + ++
Sbjct:    23 MGILSTLYMRLFLPDSIRDNS---LGAPIVINEKLSSPLLEDCPGHRNRIFRAIRLVHEM 79

Query:   239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI 273
               L+RSSV L Q A+V+FFS L+E G+ AS + Y+
Sbjct:    80 ASLMRSSVPLFQVAMVSFFSSLAEAGLHASSMYYL 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.136   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       247   0.00078  114 3  11 22  0.47    32
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  152 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.67u 0.11s 17.78t   Elapsed:  00:00:01
  Total cpu time:  17.67u 0.11s 17.78t   Elapsed:  00:00:01
  Start:  Sat May 11 07:49:21 2013   End:  Sat May 11 07:49:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	7e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-04
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	0.002
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.003
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.003

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 15/189 (7%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+       L     E  L +           LG  +  P+ G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLL-------TAFSLGYALAQPLAG 53

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L + L L  + L +L +  S+        L      +  G++   A A 
Sbjct: 54  RLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL----QGLGGGALFPAAAAL 109

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLST----TSAFQAATIVSMLAAAYMR 188
           +AD     +R  A G+L          G L    L++     +AF    I+++LAA    
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAA 169

Query: 189 VFLKDDVPN 197
           + L    P 
Sbjct: 170 LLLPRPPPE 178

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 12/173 (6%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+  +         ++  L+   +G   +   LG  +   + G
Sbjct: 4   LFLGFFLSGLDRGLLSPALPLL--------AEDLGLSASQAGLIVSAFSLGYALGSLLAG 55

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L L L L  +   +LA+  S+        L      +  G++   A A 
Sbjct: 56  YLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFL----LGLGGGALYPAAAAL 111

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAA 185
           +A+    ++R  A G+         + G L    L+ +  ++   ++  +   
Sbjct: 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL 164

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 58  AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLT 117
           A   LG L+  P+ G L+D++GRK +L + L + ++  A+ A   +I+       L+   
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSA----F 173
           A     +      A +AD     +R  A G++   ++   + G      L+        F
Sbjct: 65  AAFALVAGA----ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120

Query: 174 QAATIVSMLAAAYMRVFLKD 193
               I+++ A   +   L +
Sbjct: 121 LFLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 8/174 (4%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           L + + L  F        +     + L    +   L+   +G   ++ GLG ++   + G
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYL---QEVLGLSAAEAGLLLSLFGLGGILGALLGG 232

Query: 73  NLSDQYGRK-AMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALA 131
            LSD+ GR+  +L + L L+ + L +LA   S++       L         G      L 
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL----LGFGLGFAFPALLT 288

Query: 132 YVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAA 185
             ++      R +A G+     S     G L A  L  T  +    ++    A 
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 57  QAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTL 116
           Q+   +G L+   V G LSD++GRK +L L   ++ +   + A+  S ++   +   R L
Sbjct: 133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF--SPNYTV-FLVFRLL 189

Query: 117 TAMVCEG-SINCLALAYVADNISERQRASAFGILLGV 152
             M   G  +  + L    + + ++QRA   G L+ V
Sbjct: 190 VGMGIGGIWVQAVVL--NTEFLPKKQRAI-VGTLIQV 223

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 1/152 (0%)

Query: 7   IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLV 66
           +     L     LW    +++        +  L    +   L+  L+G    + GL   +
Sbjct: 193 VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAI 252

Query: 67  MMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSIN 126
              ++G LSD+ GR+  L L L L I+    LA                L      G + 
Sbjct: 253 GRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVA-LLLLGFGAGLVF 311

Query: 127 CLALAYVADNISERQRASAFGILLGVLSASFV 158
               A V+D   + +R +A G+     S    
Sbjct: 312 PALNALVSDLAPKEERGTASGLYNTAGSLGGA 343

Length = 346

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 16/183 (8%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           L +  F  G    + V  +     +A   G+ E +    ++ +      LG  +  P++ 
Sbjct: 18  LALAAFAIGTTEFVPVGLLPP---IAADLGVSEGAAGQLITAY-----ALGVALGAPLLA 69

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            L+ +  R+ +L   L L I+   + A   S   F      R L  +   G    +A A 
Sbjct: 70  LLTGRLERRRLLLGLLALFIVSNLLSALAPS---FAVLLLARALAGLAH-GVFWSIAAAL 125

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT----SAFQAATIVSMLAAAYMR 188
            A  +   +R  A  ++   L+ + V G     FL       + F A  ++++LA   + 
Sbjct: 126 AARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLW 185

Query: 189 VFL 191
             L
Sbjct: 186 KLL 188

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.91
TIGR00900	365	2A0121 H+ Antiporter protein.	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
PRK11663	434	regulatory protein UhpC; Provisional	99.91
PRK03545	390	putative arabinose transporter; Provisional	99.91
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.91
PRK10054	395	putative transporter; Provisional	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.9
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.9
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.89
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.89
PRK10091	382	MFS transport protein AraJ; Provisional	99.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.89
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.88
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.88
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.87
PRK03633	381	putative MFS family transporter protein; Provision	99.87
PRK12307	426	putative sialic acid transporter; Provisional	99.87
PRK10504	471	putative transporter; Provisional	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.87
PLN00028	476	nitrate transmembrane transporter; Provisional	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.87
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.87
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.87
TIGR00891	405	2A0112 putative sialic acid transporter.	99.87
PRK10489	417	enterobactin exporter EntS; Provisional	99.87
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.86
PRK09874	408	drug efflux system protein MdtG; Provisional	99.86
PRK11043	401	putative transporter; Provisional	99.86
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.86
TIGR00895	398	2A0115 benzoate transport.	99.86
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.85
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.85
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.85
PRK03699	394	putative transporter; Provisional	99.85
PRK09705	393	cynX putative cyanate transporter; Provisional	99.85
PRK10133	438	L-fucose transporter; Provisional	99.85
KOG2532	466	consensus Permease of the major facilitator superf	99.85
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.85
PRK09952	438	shikimate transporter; Provisional	99.85
PRK05122	399	major facilitator superfamily transporter; Provisi	99.84
PRK10642	490	proline/glycine betaine transporter; Provisional	99.84
PRK12382	392	putative transporter; Provisional	99.84
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.84
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.84
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.83
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.83
TIGR00805	633	oat sodium-independent organic anion transporter.	99.83
KOG2615	451	consensus Permease of the major facilitator superf	99.82
PRK15075	434	citrate-proton symporter; Provisional	99.82
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.81
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.81
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.81
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.8
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.8
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.8
TIGR00898	505	2A0119 cation transport protein.	99.8
PRK11902	402	ampG muropeptide transporter; Reviewed	99.8
TIGR00901	356	2A0125 AmpG-related permease.	99.8
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.8
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.79
PRK11010	491	ampG muropeptide transporter; Validated	99.79
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.79
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.79
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.78
PRK03893	496	putative sialic acid transporter; Provisional	99.78
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.78
KOG2533	495	consensus Permease of the major facilitator superf	99.78
PRK15011	393	sugar efflux transporter B; Provisional	99.77
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.77
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.77
PRK09528	420	lacY galactoside permease; Reviewed	99.77
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.76
KOG0569	485	consensus Permease of the major facilitator superf	99.76
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.76
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.74
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.71
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.71
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.7
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.69
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.68
PRK10642	490	proline/glycine betaine transporter; Provisional	99.68
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.67
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.66
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.66
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.66
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.65
PTZ00207	591	hypothetical protein; Provisional	99.64
PRK10429	473	melibiose:sodium symporter; Provisional	99.64
PRK09874	408	drug efflux system protein MdtG; Provisional	99.63
KOG0254	513	consensus Predicted transporter (major facilitator	99.63
PRK10489	417	enterobactin exporter EntS; Provisional	99.63
PRK05122	399	major facilitator superfamily transporter; Provisi	99.61
PRK09528	420	lacY galactoside permease; Reviewed	99.61
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.61
PRK15011	393	sugar efflux transporter B; Provisional	99.59
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.58
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.58
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.58
PRK03893	496	putative sialic acid transporter; Provisional	99.58
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.57
PRK12382	392	putative transporter; Provisional	99.57
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.56
PRK09669	444	putative symporter YagG; Provisional	99.56
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.55
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.55
PRK09705	393	cynX putative cyanate transporter; Provisional	99.55
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.55
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.54
PF13347	428	MFS_2: MFS/sugar transport protein	99.53
PRK03633	381	putative MFS family transporter protein; Provision	99.52
PRK09952	438	shikimate transporter; Provisional	99.52
PRK10504	471	putative transporter; Provisional	99.52
PRK03545	390	putative arabinose transporter; Provisional	99.52
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.52
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.51
PRK09848	448	glucuronide transporter; Provisional	99.51
PRK03699	394	putative transporter; Provisional	99.5
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.5
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.5
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.49
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.49
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.48
PRK11663	434	regulatory protein UhpC; Provisional	99.48
TIGR00893	399	2A0114 d-galactonate transporter.	99.48
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.47
PRK11462	460	putative transporter; Provisional	99.45
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.43
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.43
COG2211	467	MelB Na+/melibiose symporter and related transport	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.41
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.41
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.4
PRK12307	426	putative sialic acid transporter; Provisional	99.4
TIGR00900	365	2A0121 H+ Antiporter protein.	99.4
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.4
TIGR00891	405	2A0112 putative sialic acid transporter.	99.39
PRK15075	434	citrate-proton symporter; Provisional	99.39
TIGR00895	398	2A0115 benzoate transport.	99.39
TIGR00898	505	2A0119 cation transport protein.	99.38
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.38
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.38
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.37
PLN00028	476	nitrate transmembrane transporter; Provisional	99.37
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.37
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.37
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.37
PRK11010	491	ampG muropeptide transporter; Validated	99.37
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.36
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.35
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.35
PRK10054	395	putative transporter; Provisional	99.34
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.34
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.33
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.33
PRK10091	382	MFS transport protein AraJ; Provisional	99.33
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.32
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.32
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.32
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.3
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.29
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.28
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.28
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.28
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.27
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.27
KOG0569	485	consensus Permease of the major facilitator superf	99.27
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.26
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.25
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.25
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.24
PRK09848	448	glucuronide transporter; Provisional	99.24
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.24
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.24
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.23
PRK11902	402	ampG muropeptide transporter; Reviewed	99.23
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.21
TIGR00901	356	2A0125 AmpG-related permease.	99.2
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.2
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.19
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.19
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.18
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.16
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.16
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.15
PRK10429	473	melibiose:sodium symporter; Provisional	99.14
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.14
KOG3626	735	consensus Organic anion transporter [Secondary met	99.13
PF13347	428	MFS_2: MFS/sugar transport protein	99.11
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.11
PRK10133	438	L-fucose transporter; Provisional	99.08
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.08
PRK11043	401	putative transporter; Provisional	99.07
PRK09669	444	putative symporter YagG; Provisional	99.07
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.07
KOG3762	618	consensus Predicted transporter [General function	99.04
KOG2563	480	consensus Permease of the major facilitator superf	99.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.0
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.0
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.97
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.96
KOG2532	466	consensus Permease of the major facilitator superf	98.95
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.9
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.9
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.87
COG2211	467	MelB Na+/melibiose symporter and related transport	98.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.82
COG0477	338	ProP Permeases of the major facilitator superfamil	98.8
PRK11462	460	putative transporter; Provisional	98.78
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.78
KOG0637	498	consensus Sucrose transporter and related proteins	98.78
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.75
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.73
KOG0254	513	consensus Predicted transporter (major facilitator	98.68
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.63
PF12832	77	MFS_1_like: MFS_1 like family	98.61
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.6
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.54
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.52
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.52
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.45
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.42
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.37
KOG2533	495	consensus Permease of the major facilitator superf	98.34
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.34
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.32
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.29
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.28
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.27
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.2
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.1
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.9
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.81
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.81
KOG2615	451	consensus Permease of the major facilitator superf	97.8
COG3202	509	ATP/ADP translocase [Energy production and convers	97.77
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.73
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.68
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.61
PTZ00207	591	hypothetical protein; Provisional	97.59
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.55
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.55
KOG2563	480	consensus Permease of the major facilitator superf	97.33
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.32
PRK03612	521	spermidine synthase; Provisional	97.27
KOG3762	618	consensus Predicted transporter [General function	97.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.84
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.73
KOG3810	433	consensus Micronutrient transporters (folate trans	96.58
TIGR00805	633	oat sodium-independent organic anion transporter.	96.56
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.78
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.53
KOG3880	409	consensus Predicted small molecule transporter inv	94.67
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	94.19
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.05
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.73
KOG2325	488	consensus Predicted transporter/transmembrane prot	93.1
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	92.97
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	92.73
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.17
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	91.11
KOG0637	498	consensus Sucrose transporter and related proteins	89.47
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.49
KOG3880	409	consensus Predicted small molecule transporter inv	87.0
KOG3626	735	consensus Organic anion transporter [Secondary met	82.88
KOG3810	433	consensus Micronutrient transporters (folate trans	81.28
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	80.16

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=6.8e-24  Score=175.75  Aligned_cols=222  Identities=18%  Similarity=0.207  Sum_probs=188.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +..++.+.+..|......+.....+|...+|.        +.+...+|...+.|.++..+++|+...++||+.||++++.
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl--------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~   83 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADL--------GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG   83 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence            33556667777888888899999999998775        7788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      ...+++++.++.+++++   ++.+++.|++.|+ ..|.+++...+...++.|+++|++++++...+..++.++|..++.+
T Consensus        84 ~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          84 LLALFIVSNLLSALAPS---FAVLLLARALAGL-AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999   9999999999998 7788889999999999999999999999999999999888776665


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHH
Q 024030          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (273)
Q Consensus       167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  242 (273)
                      +    |||.+|...+.+.++..+..+..+|  +++.+++                       ++.      +.++.++ +
T Consensus       160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~-----------------------~~~------~~~~~~~-~  207 (394)
T COG2814         160 LGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS-----------------------LPG------PLRTLLR-L  207 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------------------CCc------chhHHHH-H
Confidence            5    9999999999999998888888888  1111110                       000      1222222 6


Q ss_pred             hhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      .|+|+++...+..++...+++..++++..|
T Consensus       208 l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~  237 (394)
T COG2814         208 LRRPGVLLGLLATFLFMTGHFALYTYIRPF  237 (394)
T ss_pred             hcCchHHHHHHHHHHHHcchhhhHHhHHHH
Confidence            678999999999999999999988887665

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=2.8e-23  Score=175.43  Aligned_cols=212  Identities=13%  Similarity=-0.008  Sum_probs=163.0

Q ss_pred             HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (273)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  100 (273)
                      ........+.+|.+.+|.        +.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+......
T Consensus         4 ~~~~~~~~~~lp~i~~~~--------~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~   75 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAEDI--------DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD   75 (368)
T ss_pred             hHHHHHHHhhHHHHHHHh--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            444556678888886553        667788899999999999999999999999999998876655555444332223


Q ss_pred             ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHH
Q 024030          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAA  176 (273)
Q Consensus       101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~  176 (273)
                      .++   ++.+++.|++.|+ +.+.. ....+.++|++|+++|++++++...+..+|..+++.++..+    +||+.|.+.
T Consensus        76 ~~~---~~~l~~~R~l~G~-g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        76 PFN---YEWLLACQLLAAL-GQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             hcc---HHHHHHHHHHHHh-HhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            255   8899999999998 55554 56666779999999999999999999999999999888877    999999998


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHH
Q 024030          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF  256 (273)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  256 (273)
                      +++.++..++.++.+||+++.++++                      .  +. +   +..+.++.++|||.++...+..+
T Consensus       151 ~~l~~~~~~~~~~~lp~~p~~~~~~----------------------~--~~-~---~~~~~~~~ll~~~~~~~~~~~~~  202 (368)
T TIGR00903       151 AAVAAAGIILVLAALPALPFQAAEG----------------------F--GF-K---DAVKEFGALAGRKDLWIIGAILG  202 (368)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCC----------------------c--ch-H---HHHHHHHHHHcChhHHHHHHHHH
Confidence            8888777776677788865432110                      0  00 0   00112344778999999999999


Q ss_pred             HhccccccceeeeeccC
Q 024030          257 FSGLSEGGMQASFLVYI  273 (273)
Q Consensus       257 ~~~~~~~~~~~~~~~yl  273 (273)
                      +....++++.+|+|.|+
T Consensus       203 ~~~~~~~~~~~wlp~~L  219 (368)
T TIGR00903       203 FGVALFDNLAIWLEAAL  219 (368)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999885

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.92  E-value=8.9e-24  Score=181.50  Aligned_cols=253  Identities=11%  Similarity=0.059  Sum_probs=178.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++.+...++..++............|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGK--------DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHh--------hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            444555566666667777777777775433        447777889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +.++..++..+..+.++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~  154 (412)
T TIGR02332        79 IMVLWGIASTATMFATG---PESLYLLRILVGI-AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY  154 (412)
T ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888   8899999999998 5566668888899999999999999999999999999999988775


Q ss_pred             h----------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHH
Q 024030          167 L----------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (273)
Q Consensus       167 l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (273)
                      +          +||+.|.+.++..++..++.++++||++++.+.-++.++.....+...+..+.+++.+.. .+.....+
T Consensus       155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  233 (412)
T TIGR02332       155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAF-AHAAMPQR  233 (412)
T ss_pred             HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccccc-ccccccHH
Confidence            4          799999998888776666656777887643221000000000000000000000000000 00001112


Q ss_pred             HHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      +.++.++ +|.++...+.+++....+.++.+++|.|+
T Consensus       234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l  269 (412)
T TIGR02332       234 SMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQIL  269 (412)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233344 57888888888888888888888888774

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.91  E-value=2e-22  Score=172.53  Aligned_cols=172  Identities=19%  Similarity=0.208  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (273)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~   90 (273)
                      ..++...++...+.+...|++|.++++       +.+.+..+.|++.+...+...+.+++.|+++||+|||+++..+...
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~   85 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVD-------QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence            556678888888999999999999854       3367788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 024030           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (273)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---  167 (273)
                      ..++...+...++   .+.+++.|++.|+ +.+...+...+++.|.+|+++|++++|+.+...++|..+||.+++.+   
T Consensus        86 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~  161 (400)
T PRK11646         86 RAAGFATMAIAHE---PWLLWLSCILSGL-GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY  161 (400)
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999888888777   8888999999998 55666688899999999999999999999999999999999999887   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030          168 STTSAFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      +|++.|++.++..++..++..+..||
T Consensus       162 g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        162 DFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            88999988877766655444444554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.91  E-value=1.3e-22  Score=171.06  Aligned_cols=224  Identities=16%  Similarity=0.152  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~   92 (273)
                      ++...++..++.....+.+|.|..+.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~   75 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAG--------TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRA   75 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHH
Confidence            45677778888888889999997664        5667788999999999999999999999999999999999988877


Q ss_pred             HHHHHHHhcc-----CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           93 IPLAILAYRR-----SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        93 ~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ++..+..+.+     +   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+||.+++.+
T Consensus        76 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l  151 (365)
T TIGR00900        76 VLVAVLPFVALLGGLN---IWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM  151 (365)
T ss_pred             HHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            7777666655     5   8889999999998 66777789999999999999999999999999999999999988776


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHh
Q 024030          168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (273)
Q Consensus       168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  243 (273)
                          +|++.|++.++..++..+. .+..+++++++++++                       +..++..++.++..+.++
T Consensus       152 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~  207 (365)
T TIGR00900       152 YATLGIKWAIWVDAVGFAISALL-IVSVRIPELAASEIQ-----------------------ALSNAVLRDTREGIKFVL  207 (365)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHH-HHhcccccCCCcccc-----------------------ccchhHHHHHHhHHHHHH
Confidence                7899888876655554443 222322111111100                       000011112334455577


Q ss_pred             hcchhHHHHHHHHHhccccccce-eeeecc
Q 024030          244 SSVTLSQAAVVAFFSGLSEGGMQ-ASFLVY  272 (273)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y  272 (273)
                      |+|.++...+..++......... .+.|.|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (365)
T TIGR00900       208 KNPLLRTLLLLALLFNLVFAPAIVALFPYV  237 (365)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            89999988888887777766555 555554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.5e-23  Score=172.08  Aligned_cols=244  Identities=15%  Similarity=0.143  Sum_probs=190.4

Q ss_pred             hhhHHHHHHHHHHHHHHHh----HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchh
Q 024030            8 KTLSHLFVTVFLWGFATMM----VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~   83 (273)
                      |.-+-+++..++...+++.    .....|...+|.        +.+..+.|++.+.+.+.+.++..+.|.++||.+.|+.
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~--------~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f   96 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG--------GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF   96 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee
Confidence            3333445555555555444    445666665442        5778899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      +.+++++.++..++++++++   .+.+.+..++.|. .+|.-.|++...+++++|+++||+..++.+++.++|+.+.|++
T Consensus        97 m~~gLilsai~nil~Gfs~s---~~~~~~l~~lng~-fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~  172 (448)
T COG2271          97 MAFGLILSAIVNILFGFSPS---LFLFAVLWVLNGW-FQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLV  172 (448)
T ss_pred             ehHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHH-HhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence            99999999999999999998   9999999999998 7788889999999999999999999999999999999998887


Q ss_pred             H--HHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccc-cchHH
Q 024030          164 A--RFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK-IPSIR  236 (273)
Q Consensus       164 ~--~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  236 (273)
                      .  +.+    +||..|++.+++.++..++.++..+++|++..-++-.+..++    +.+..      .+++++. ...++
T Consensus       173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d----~~e~~------~~~~~~~~ls~~~  242 (448)
T COG2271         173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGD----PLEIY------EEEKENEGLTAWQ  242 (448)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcC----chhhh------hhhccCCCccHHH
Confidence            7  555    799999999999988888878888887766554211111111    00000      0111111 22334


Q ss_pred             HHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      ...+.+++||.+|.+++++++...+.++++.|-|.||
T Consensus       243 i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL  279 (448)
T COG2271         243 IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYL  279 (448)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4556689999999999999999999999999999985

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.91  E-value=1.8e-22  Score=174.63  Aligned_cols=238  Identities=12%  Similarity=0.059  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~   92 (273)
                      .++..+...+......+.+|.+.++        ++.+..+.|++.+.+.++..+++++.|+++||+|||+++.++.++..
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEMLAD--------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            3444444455555667788888654        36677788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h
Q 024030           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S  168 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~  168 (273)
                      ++..++.+.++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..++|.+++.+    +
T Consensus       100 ~~~~~~~~~~~---~~~l~~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663        100 IINILFGFSSS---LWAFALLWVLNAF-FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHhH---HHHHHHHHHHHHH-HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99888888877   8888899999997 55555688899999999999999999999999999999999888766    8


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHH-HHHhhcch
Q 024030          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI-CLLRSSVT  247 (273)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~  247 (273)
                      ||+.|.+.+++.++..++..+.+||+++....++..++..        +. ++...+++  +...+.++.+ +..+++|.
T Consensus       176 w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--------~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~  244 (434)
T PRK11663        176 WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH--------DA-LELAQQQE--GAGLSRKEILTKYVLLNPY  244 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc--------cc-cccchhcc--ccCCChhhhHHHHHhcChH
Confidence            9999998877766555554556676543221110000000        00 00000000  0001222222 23567888


Q ss_pred             hHHHHHHHHHhccccccceeeeeccC
Q 024030          248 LSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      ++...+..++....+.++.+++|.|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l  270 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYM  270 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877777777777777777663

>PRK03545 putative arabinose transporter; Provisional

Probab=99.91  E-value=2e-22  Score=172.06  Aligned_cols=171  Identities=15%  Similarity=0.138  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHH
Q 024030           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (273)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~   91 (273)
                      .+.+..+......+...+.+|.+.+|        ++.+..+.|++.+.+.++..+++++.|.++||+|||+++..+....
T Consensus        13 ~l~~~~~~~~~~~~~~~~~~~~l~~~--------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545         13 TLALAAFIFNTTEFVPVGLLSDIAQS--------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             HHHHHHHHHHhHHHHHHcchHHHHhH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            33344444334444555667877554        3677788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 024030           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----  167 (273)
                      .++...+.+.++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++|+.....++|..+||.+++.+    
T Consensus        85 ~~~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~  160 (390)
T PRK03545         85 IASHVLSALAWN---FTVLLISRIGIAF-AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL  160 (390)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            999998888888   9999999999998 55666688899999999999999999999999999999999888765    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          168 STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +||+.|++.+++.++..+......||+
T Consensus       161 gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        161 GWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            899999998887766655545555543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.91  E-value=3.3e-22  Score=171.79  Aligned_cols=216  Identities=14%  Similarity=0.131  Sum_probs=166.6

Q ss_pred             HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (273)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~   96 (273)
                      .++..+......|.+|...++.        +.+....++..+++.++..+++++.|+++||+|||++++.+..+..++..
T Consensus        25 ~~~~~~~~~~~~p~l~~i~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~   96 (413)
T PRK15403         25 DFAAYLTTDLIQPGIINVVRDF--------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA   96 (413)
T ss_pred             HHHHHHHHHhhccCHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence            3344456677778888765443        55666778888999999999999999999999999999999999999988


Q ss_pred             HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 024030           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA  172 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~  172 (273)
                      ++...++   ++.+++.|+++|+ +.+...+...+++.|.+|+++|++++++......+|..+||.+++.+    +||+.
T Consensus        97 ~~~~a~~---~~~l~~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~  172 (413)
T PRK15403         97 ATLFTTS---MTQFLIARFIQGT-SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVL  172 (413)
T ss_pred             HHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            8888888   8899999999998 44555567778899999999999999999999999999999988866    89999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHH
Q 024030          173 FQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAA  252 (273)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  252 (273)
                      |++.++..++..+...+.+||++++++++                         ...   ....+.++.++|||.++...
T Consensus       173 f~~~~~~~~i~~~~~~~~lp~~~~~~~~~-------------------------~~~---~~~~~~~~~ll~~~~~~~~~  224 (413)
T PRK15403        173 FAIIAVMGLIAFVGLLLAMPETVKRGAVP-------------------------FSA---KSVLRDFRNVFRNRLFLTGA  224 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCccccCCC-------------------------CCh---HHHHHHHHHHHcCHHHHHHH
Confidence            99988877776665556677754321110                         000   01122334467899999888


Q ss_pred             HHHHHhccccccceeeeecc
Q 024030          253 VVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~y  272 (273)
                      +..++......+...+.|.|
T Consensus       225 l~~~~~~~~~~~~~~~~P~~  244 (413)
T PRK15403        225 ATLSLSYIPMMSWVAVSPVI  244 (413)
T ss_pred             HHHHHHHHHHHHHHHhChHH
Confidence            88777777766666666654

>PRK10054 putative transporter; Provisional

Probab=99.91  E-value=2e-22  Score=172.19  Aligned_cols=178  Identities=18%  Similarity=0.248  Sum_probs=149.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.++.+....++...+.+...|++|.|+++       +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~-------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~   78 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSR-------QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL   78 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence            5567777788888899999999999999865       336777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +.+...++...+.+.++   ++.+++.+.+.|. ..+...+...++..|..|+++|+++.++.+...++|..+||.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~  154 (395)
T PRK10054         79 AITAFASGFIAIPLVNN---VTLVVLFFALINC-AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL  154 (395)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888888888777   7777778877775 4455567889999999999999999999999999999999999988


Q ss_pred             h---hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          167 L---STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       167 l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      +   +|+.+|.+.++..++..+...+.+||++
T Consensus       155 l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        155 LVMQSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7   7899999887777666555455566543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=5.5e-22  Score=168.77  Aligned_cols=225  Identities=19%  Similarity=0.159  Sum_probs=170.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++.........+....+..+..|.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   75 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADL--------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL   75 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence            44444444445556677788888999886553        6667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +.++..++.......++   ++.+++.|++.|+ +.+...+...+++.|.+|+++|++++++.+....+|..++|.+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  151 (385)
T TIGR00710        76 GLFIFALSSLGLALSNN---IETLLVLRFVQAF-GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY  151 (385)
T ss_pred             HHHHHHHHHHHHHHHcc---HHHHHHHHHHHHc-chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888877   8889999999998 6666668999999999999999999999999999999999998887


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHH
Q 024030          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (273)
Q Consensus       167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  242 (273)
                      +    +|+..+.+.++..++..+...+..||++++++++                         +    .+...+..+..
T Consensus       152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~----~~~~~~~~~~~  202 (385)
T TIGR00710       152 ILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI-------------------------Q----ISTYFETFLLL  202 (385)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC-------------------------C----HHHHHHHHHHH
Confidence            6    7899998887777666665555566543221110                         0    00112223346


Q ss_pred             hhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      +|+|+++...+...+..........+.|.|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (385)
T TIGR00710       203 LKSKMFWGYALIYGASFGGFFAFFSGAPFV  232 (385)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHcChHH
Confidence            778888877776666555555555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.90  E-value=1.3e-21  Score=167.17  Aligned_cols=161  Identities=14%  Similarity=0.211  Sum_probs=134.7

Q ss_pred             HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (273)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  100 (273)
                      ....+...+.+|.+.++        ++.+..+.|+..+.+.++..+++++.|+++||+|||+++..+.++..++..++.+
T Consensus        33 ~~~~~~~~~~l~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~  104 (394)
T PRK10213         33 IIVEFLPVSLLTPMAQD--------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF  104 (394)
T ss_pred             HHHHHHHHhhHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH
Confidence            33344555677777544        3677788899999999999999999999999999999999999999998888888


Q ss_pred             ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHH
Q 024030          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAA  176 (273)
Q Consensus       101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~  176 (273)
                      .++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.....++|..+||.+++.+    +||+.|++.
T Consensus       105 ~~~---~~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~  180 (394)
T PRK10213        105 ANS---FSLLLIGRACLGL-ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA  180 (394)
T ss_pred             HCh---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            877   9999999999998 65666789999999999999999999999999999999999998876    899999988


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 024030          177 TIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       177 ~~~~~~~~~~~~~~~~~  193 (273)
                      +++.++..+......||
T Consensus       181 ~~l~~~~~l~~~~~~p~  197 (394)
T PRK10213        181 AVMGVLCIFWIIKSLPS  197 (394)
T ss_pred             HHHHHHHHHHHHHHCCC
Confidence            76665544443334555

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.90  E-value=1.2e-21  Score=172.14  Aligned_cols=177  Identities=20%  Similarity=0.154  Sum_probs=151.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +..+..+.+..++..+...++...+|.+.+|.        +.+....+++.+.+.++...+.+++|+++||+|||++++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l--------~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~   76 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTL--------GASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML   76 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            44566677888888888999999999997654        5566678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                      +..+..++.+.++++++   .+.+++.|+++|+ +.+...+.....+.+.+ |+++|++++|+......+|..+||.+++
T Consensus        77 ~~~~~~~~~~~~~~a~~---~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg  152 (495)
T PRK14995         77 GGTLFGLASLAAAFSPT---ASWLIATRALLAI-GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG  152 (495)
T ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988   8999999999998 55556577777776665 7899999999999999999999999998


Q ss_pred             Hh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          166 FL----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       166 ~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      .+    +||+.|++...+.++..++..+.+|+++
T Consensus       153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            88    8999999988777777666667777654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.90  E-value=1e-22  Score=170.96  Aligned_cols=227  Identities=26%  Similarity=0.351  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHH
Q 024030           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (273)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~   93 (273)
                      ++..++..++.....+.+|.++.+       +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~   74 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAE-------ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFAL   74 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHC-------CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhh
Confidence            456667777888888899854433       2355666789999999999999999999999999999999999999888


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hh
Q 024030           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----ST  169 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~  169 (273)
                      +..+..++++   .+.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..++|.+++.+    +|
T Consensus        75 ~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~  150 (352)
T PF07690_consen   75 GSLLLAFASN---FWLLLIARFLLGI-GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW  150 (352)
T ss_dssp             HHHHHHHHCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred             HHHHhhhhhh---HHHHhhhcccccc-ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence            8555555555   6789999999998 66777799999999999999999999999999999999999999887    79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhH
Q 024030          170 TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS  249 (273)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  249 (273)
                      ++.|++.+++.++..++...+.++++++++++++.                +++     .+..++..+.++.++++|.++
T Consensus       151 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~----------------~~~-----~~~~~~~~~~~~~~~~~~~~~  209 (352)
T PF07690_consen  151 RWAFLISAILSLIAAILFILFLPEPPPPRERESPK----------------ESE-----SKKPKPLKPGFKSLFKNPVLW  209 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCC---STTTT--SST----------------TTT-------HHHCCCH-CTHHHHHHCCH
T ss_pred             ccccccccchhhhhhhhHhhhhhhccccccccccc----------------ccc-----cccccccccccccccccchhh
Confidence            99999998888877665445555544433332100                000     000001111223355667776


Q ss_pred             HHHHHHHHhccccccceeeeecc
Q 024030          250 QAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      ...+..++..+.......++|.|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~  232 (352)
T PF07690_consen  210 ILLIAFFLFFFVFSGFSFFLPLY  232 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhhcccchh
Confidence            55566666655666666666665

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=3.4e-21  Score=164.67  Aligned_cols=182  Identities=17%  Similarity=0.147  Sum_probs=147.5

Q ss_pred             CCchhhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC
Q 024030            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR   80 (273)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr   80 (273)
                      |+.++.+|.+........+.........|.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+||
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr   72 (394)
T PRK11652          1 MKRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDL--------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR   72 (394)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC
Confidence            44445455555555566666667777788888886553        6677788999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030           81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (273)
Q Consensus        81 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (273)
                      |+.+..+.....++...+.+.++   ++.+++.|++.|+ +.+...+....+..|..++++|+++++..+.+..++..++
T Consensus        73 r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (394)
T PRK11652         73 RPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGL-GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA  148 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888888777   8889999999998 5555557778888999999999999999999999999999


Q ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       161 p~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      |.+++.+    +|++.|++.++..++..++..+..||+
T Consensus       149 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (394)
T PRK11652        149 PLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPET  186 (394)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9888776    799999988777665555545556664

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.89  E-value=5.3e-22  Score=168.88  Aligned_cols=232  Identities=17%  Similarity=0.118  Sum_probs=167.2

Q ss_pred             HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (273)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~   99 (273)
                      ............|.+.++        ++.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++..++..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   77 (399)
T TIGR00893         6 NYLDRANLSFAAPMLQED--------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA   77 (399)
T ss_pred             HHHHHHhhhHhHHHHHHh--------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence            344445555666665433        356677889999999999999999999999999999999999999999888888


Q ss_pred             hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 024030          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA  175 (273)
Q Consensus       100 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~  175 (273)
                      +.++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..++|.+++.+    +|++.|.+
T Consensus        78 ~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  153 (399)
T TIGR00893        78 FAGA---YVSLYILRVLLGA-AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII  153 (399)
T ss_pred             HHcC---HHHHHHHHHHHHH-HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence            8887   8999999999998 56667789999999999999999999999999999999999988865    89999998


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHH
Q 024030          176 ATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVA  255 (273)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  255 (273)
                      .++..++..++..+..||++++++..++.++......  .. .+.  +.+++..+.    ++..+..+++|+++...+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  224 (399)
T TIGR00893       154 EGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGG--LL-AEQ--QGKGPSTPK----KYQIKELLKDRRVWGLALGQ  224 (399)
T ss_pred             HHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchh--hc-ccc--ccccccCCC----ccchHHHhcCHHHHHHHHHH
Confidence            8877776666545556665432221110000000000  00 000  000010111    11123366788999888888


Q ss_pred             HHhccccccceeeeecc
Q 024030          256 FFSGLSEGGMQASFLVY  272 (273)
Q Consensus       256 ~~~~~~~~~~~~~~~~y  272 (273)
                      ++..........++|.|
T Consensus       225 ~~~~~~~~~~~~~~~~~  241 (399)
T TIGR00893       225 FLVNIGLGFFLTWFPTY  241 (399)
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            88888888777777765

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.4e-23  Score=173.86  Aligned_cols=233  Identities=14%  Similarity=0.210  Sum_probs=178.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      +.+..+++..+++....+.+...++..        ++.++.+....|++.+.+.+...+.+|+.|+++||++||+++..|
T Consensus        33 ~~l~il~~vnlmny~Dr~~iagv~~~v--------~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG  104 (493)
T KOG1330|consen   33 LTLVILCLVNLMNYADRYTIAGVLKEV--------QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG  104 (493)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHH--------HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence            344555666666666666555544443        445577778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ..++.++.+..+++..   +|.+.+.|.+.|+ +.+.+.+..+++++|.+|.++|++.+++++.+..+|..+|.+.++.+
T Consensus       105 ~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v  180 (493)
T KOG1330|consen  105 IFIWTLAVFASGFSNH---FWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV  180 (493)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHhcc-chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence            9999999999999977   9999999999998 77888899999999999999999999999999999998887776655


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHH
Q 024030          168 -----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (273)
Q Consensus       168 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  242 (273)
                           .||+.|...+++.++..++..++.+|+++...++.                   +.. ....+...+..+-++.+
T Consensus       181 a~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~-------------------~~~-~~~~~~~ts~~kDl~~l  240 (493)
T KOG1330|consen  181 ASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV-------------------DGE-NKMVKPFTSVWKDLKVL  240 (493)
T ss_pred             ccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc-------------------ccC-CcCCCCccchHHHHHHH
Confidence                 49999999999999988887888887765433210                   000 00011122333334446


Q ss_pred             hhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      .|+|.+....+......+...++..|-|.+
T Consensus       241 ~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~  270 (493)
T KOG1330|consen  241 AKIKVFVLSSLGIIAAQFVIGSLSWWAPAF  270 (493)
T ss_pred             HccCceeeehHHHHHHHHhccccchhhhhH
Confidence            666777777777777777776666655543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.89  E-value=2.8e-21  Score=165.06  Aligned_cols=172  Identities=13%  Similarity=0.209  Sum_probs=132.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      |+++.++...++..++..+.....+...++.        +.+....+++.+.+.++..+..|+.|+++||+|||++++.+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~   74 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKEL--------HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIA   74 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHH
Confidence            3556677788888877766666666665543        34456779999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .++..++.+.+....+   .   ++.|+++|+ +.+...|...+++.|++|+++|++++|+.+...++|..+||.++|.+
T Consensus        75 ~~~~~~~~~~~~~~~~---~---~~~r~l~G~-~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         75 NGIKLLGCLLMLFGIH---P---LLAYGLVGI-GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHHHH---H---HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988887776665444   2   678899998 66777799999999999999999999999999999999999999988


Q ss_pred             -h--hHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          168 -S--TTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       168 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                       .  |+.++.+.+...++. .+..+.+||++
T Consensus       148 ~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~  177 (393)
T PRK11195        148 ADPHAEAALAVCALIYLLA-ALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence             3  333443333332222 22245566643

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.89  E-value=3.5e-21  Score=163.97  Aligned_cols=175  Identities=18%  Similarity=0.257  Sum_probs=149.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      +.++......+..........+.+|.+.+|.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   74 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDV--------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFL   74 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHc--------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Confidence            4556667777777888888889999986553        66667789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ..+.+++.+++.+.++   ++.+++.|++.|+ +.+...+...+.+.|+.|+++|+++++....+..+|..++|.+++.+
T Consensus        75 ~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l  150 (382)
T PRK10091         75 VALCVIGNAMFTLSSS---YLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL  150 (382)
T ss_pred             HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999989888   8999999999998 55666577888899999999999999999999999999998888766


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          168 ----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                          +||+.|.+.+++.++..+...+..||.
T Consensus       151 ~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        151 SQEFSWRYTFLLIAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                899999998887766665545566664

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.89  E-value=3.3e-22  Score=169.42  Aligned_cols=233  Identities=12%  Similarity=0.054  Sum_probs=166.8

Q ss_pred             HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (273)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~   97 (273)
                      +..........+..|.+.++        ++.+..+.|++.+...++..++.++.|+++||+|||+.+..+.++..++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   76 (379)
T TIGR00881         5 AAYYLVRKNFALAMPYLVEE--------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF   76 (379)
T ss_pred             hHHHHhHHhhhhhhHHHHHH--------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence            34445555666677766443        3566678899999999999999999999999999999999999999999888


Q ss_pred             HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHh----hhHHH
Q 024030           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT-LAARFL----STTSA  172 (273)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp-~~~~~l----~~~~~  172 (273)
                      +.+.++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++| .+++.+    +|++.
T Consensus        77 ~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  152 (379)
T TIGR00881        77 FGFSTS---LWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWV  152 (379)
T ss_pred             HHHhhh---HHHHHHHHHHHHh-hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhH
Confidence            888887   8999999999998 55666688999999999999999999999999999999998 455443    78999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHH
Q 024030          173 FQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAA  252 (273)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  252 (273)
                      |.+.+++.++..++..+..||++++++.++..+...+       +.+++++. ++  +..+..+...+.+.++|.++...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~  222 (379)
T TIGR00881       153 FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNE-------EPDGDAEK-KE--EELTKKQIFLQYVLLNKVLWYIS  222 (379)
T ss_pred             HHHHHHHHHHHHHHHheeeCCCccccccCccccCccc-------cccccccc-cc--ccccchHHHHHHHHhcchHHHHH
Confidence            9888777766655555566665443222111000000       00000000 00  11112223344567889999888


Q ss_pred             HHHHHhccccccceeeeecc
Q 024030          253 VVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~y  272 (273)
                      +..++......+...+.|.|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~  242 (379)
T TIGR00881       223 LGYVFVYVVRTGILDWSPLY  242 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888877777777666665

>TIGR00897 2A0118 polyol permease family

Probab=99.88  E-value=7.7e-21  Score=162.92  Aligned_cols=229  Identities=11%  Similarity=0.091  Sum_probs=164.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~   85 (273)
                      ++|.+....+..++...+.+...+++|.+.+|.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~   82 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKAL--------GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMM   82 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHh--------CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            467778888888888888888888898887653        566778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hc-cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH-HHH
Q 024030           86 LPLTLSIIPLAILA---YR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF-VCG  160 (273)
Q Consensus        86 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g  160 (273)
                      .+..+..++..++.   .. ++   ++.+++.|++.|+ +.+...+...+.+.+..|+++|++++|+.+...++|. .++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~i~G~-g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g  158 (402)
T TIGR00897        83 IGLLLWCVGHAAFIVFGLGHAN---YPLILLFYGIRGL-GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFG  158 (402)
T ss_pred             HHHHHHHHHHHHHHHHhccCcc---HHHHHHHHHHHHc-chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888887765543   21 23   6778889999998 4455556777888999999999999999999999996 578


Q ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHH
Q 024030          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (273)
Q Consensus       161 p~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (273)
                      |.+++.+    +|+..++.......+..++..+..++.+++++++                  +     +++   ..+.+
T Consensus       159 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-----~~~---~~~~~  212 (402)
T TIGR00897       159 SYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ------------------T-----REK---FSELG  212 (402)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc------------------C-----Ccc---hhhHH
Confidence            8888765    5554444433333333333233334322111110                  0     000   01222


Q ss_pred             HHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      +..+.++|+|.++...+..++.....++..++.|.|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  248 (402)
T TIGR00897       213 KAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMF  248 (402)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233457789999988888888877777777777766

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.88  E-value=8e-21  Score=163.05  Aligned_cols=213  Identities=14%  Similarity=0.094  Sum_probs=159.4

Q ss_pred             HHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHH
Q 024030           19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL   98 (273)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~   98 (273)
                      ...++..+..|.+|.+.++.        +.+..+.++..+.+.++..+++++.|+++||+|||+++..+.....++....
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   95 (406)
T PRK15402         24 ATYIANDMIQPGMLAVVEDF--------NAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAI   95 (406)
T ss_pred             HHHhhhhhHhcchHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            33446677778888876553        5566788899999999999999999999999999999999998888888888


Q ss_pred             HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHH
Q 024030           99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQ  174 (273)
Q Consensus        99 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~  174 (273)
                      ...++   ++.+++.|++.|+ +.+...+...+.+.|.+|+++|.+++++......++..+||.+++.+    +|++.|+
T Consensus        96 ~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~  171 (406)
T PRK15402         96 LLAQS---IEQFTLLRFLQGI-GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFV  171 (406)
T ss_pred             HHHcc---HHHHHHHHHHHHh-HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence            88877   8889999999998 55666678889999999999999999999888888999999888765    8999998


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHH
Q 024030          175 AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVV  254 (273)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  254 (273)
                      +.++..++..+...+..||++++++++                         ..   ..+..+..+.+++||.++...+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~  223 (406)
T PRK15402        172 LFAALAALSFFGLWRAMPETAGRVGEK-------------------------LS---LKELGRDYKLVLKNRRFVAGALA  223 (406)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcccccc-------------------------cc---HHHHHHHHHHHHcCcHHHHHHHH
Confidence            888777766655455566543221110                         00   01223334457788988887777


Q ss_pred             HHHhccccccceeeeec
Q 024030          255 AFFSGLSEGGMQASFLV  271 (273)
Q Consensus       255 ~~~~~~~~~~~~~~~~~  271 (273)
                      .++.........++.|.
T Consensus       224 ~~~~~~~~~~~~~~~p~  240 (406)
T PRK15402        224 LGLVSLPLLAWIALSPV  240 (406)
T ss_pred             HHHHHHHHHHHHHHhHH
Confidence            66665544444333443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.88  E-value=5.4e-21  Score=161.70  Aligned_cols=234  Identities=16%  Similarity=0.108  Sum_probs=161.3

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      .++..++..+..........++.|.++++       +++.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   74 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKD-------DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL   74 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHH-------HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            34556666777777778888999975543       34677788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc-CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           89 TLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        89 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ++..++..++.+.+ +   ++.+++.|++.|+ +.+.. +...++++|++|+++|++++++.....++|..+++.+++.+
T Consensus        75 ~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        75 LLLAIPCLWAGLAVQS---YSVLLLLRLFIGI-AGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             HHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-hchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999988888887 7   8889999999998 44544 56788999999999999999999877777766665554322


Q ss_pred             --------------hhHHHHH-HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccccccc
Q 024030          168 --------------STTSAFQ-AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (273)
Q Consensus       168 --------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (273)
                                    +|++.|+ ..+++..+..++.....+|++++++++++.++.             ++ ......   
T Consensus       150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~---  212 (366)
T TIGR00886       150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK-------------GA-RWSVGT---  212 (366)
T ss_pred             HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc-------------cc-cccccc---
Confidence                          5888884 434444444444344555544322211000000             00 000000   


Q ss_pred             chHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       233 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      ...++ ....+++|+++...+..++....+.+..+++|.|
T Consensus       213 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (366)
T TIGR00886       213 GALGD-QLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMF  251 (366)
T ss_pred             hhHHH-HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            01111 2235667888888877777766666666666655

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.87  E-value=1.9e-20  Score=160.71  Aligned_cols=172  Identities=17%  Similarity=0.165  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~   92 (273)
                      .+...+...+......+..|.+.++.        +.+..+.|++.+.+.++..++.++.|+++||+|||+++..+..+..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (406)
T PRK11551         20 CFLVALLEGLDLQSAGVAAPRMAQEF--------GLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            34455555666666777777776543        6677788999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h
Q 024030           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S  168 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~  168 (273)
                      ++.+++.+.++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+    +
T Consensus        92 ~~~~~~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         92 LFSLATAQAWD---FPSLLVARLLTGV-GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HHHHHHHHhcc---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            88888888877   8889999999998 65666688999999999999999999999999999999999888665    7


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          169 TTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      |+..|++.++..++..++....+||+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~  195 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMRWLPESRA  195 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            8999988777666655555566777643

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.87  E-value=1.3e-20  Score=160.36  Aligned_cols=153  Identities=16%  Similarity=0.124  Sum_probs=136.6

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCch
Q 024030            3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA   82 (273)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~   82 (273)
                      |+++++.++.++...++...+.....+.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633          1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQE--------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            466777888889999999999999999999998653        556778899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030           83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (273)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~  162 (273)
                      .+..+.+...++...+.+.++   ++.+++.|++.|+ +.+...+...+.+.+..++++|+++++......++|..+||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  148 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGI-GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL  148 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888888887   8999999999998 556666777788888899999999999999999999999999


Q ss_pred             HHHHh
Q 024030          163 AARFL  167 (273)
Q Consensus       163 ~~~~l  167 (273)
                      +++.+
T Consensus       149 ~~~~l  153 (381)
T PRK03633        149 LVSKV  153 (381)
T ss_pred             HHhcc
Confidence            99887

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.87  E-value=1.6e-20  Score=162.09  Aligned_cols=160  Identities=13%  Similarity=0.148  Sum_probs=135.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++.+...++..+...+......+.+|.+.++        ++.+..+.+++.+.+.++..+++++.|+++||+|||+++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKAD--------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            3445555666667777777777778877544        36666788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +.+...++..+..+.++   ++.+++.|++.|+ +.+...+....++.|++|+++|++++++...+..+|..++|.+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         89 SIVAYSVGTGLSGLASG---VIMLTLSRFIVGM-GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            99999999988888887   8999999999998 5566668899999999999999999999999999999999887765


Q ss_pred             h----hhHHHHHHHHH
Q 024030          167 L----STTSAFQAATI  178 (273)
Q Consensus       167 l----~~~~~~~~~~~  178 (273)
                      +    +||+.|++...
T Consensus       165 l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        165 FAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HcccCCHHHHHHHHHH
Confidence            4    89999887543

>PRK10504 putative transporter; Provisional

Probab=99.87  E-value=2.4e-20  Score=163.11  Aligned_cols=176  Identities=15%  Similarity=0.098  Sum_probs=148.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++.++.+....++..+..+...+.+|.+.++.        +.+....|++.+.+.++..++.++.|+++||+|||+++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   80 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSL--------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFT   80 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            44567777778888888888899999997653        6666778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +..+..++.+.+.+.++   .+.+++.|+++|+ +.+...+...+.+.|.+|+++|+++.++.....++|..+||.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         81 AIVLFTLGSLFCALSGT---LNELLLARVLQGV-GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHHHHHHHHHHHhCC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            88888888877777777   8888999999998 6666668899999999999999999999999999999999999887


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          167 L----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +    +|++.|.+......+..+......|+.
T Consensus       157 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        157 LVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            6    899999988777666665545555543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=1.8e-20  Score=159.18  Aligned_cols=162  Identities=15%  Similarity=0.204  Sum_probs=139.0

Q ss_pred             HHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc
Q 024030           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR  101 (273)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  101 (273)
                      ++..+..|.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.++..++...+.+.
T Consensus         5 ~~~~~~~p~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~   76 (377)
T PRK11102          5 LAIDMYLPALPVIAADF--------GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA   76 (377)
T ss_pred             hHHHHHhccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            45567779999997653        6667788999999999999999999999999999999999999999998888888


Q ss_pred             cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHH
Q 024030          102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAAT  177 (273)
Q Consensus       102 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~  177 (273)
                      ++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+    +|++.|.+.+
T Consensus        77 ~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  152 (377)
T PRK11102         77 QT---IDQLIYMRFLHGL-AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA  152 (377)
T ss_pred             cc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence            87   8889999999998 55666688899999999999999999999999999999999988766    7899998888


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 024030          178 IVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~  195 (273)
                      ++.++..++..+..||++
T Consensus       153 ~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        153 LAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHhCCccC
Confidence            777766666566666653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.87  E-value=1.2e-20  Score=165.42  Aligned_cols=174  Identities=11%  Similarity=0.138  Sum_probs=149.7

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      +..+.+..++..+......+.+|.+.++.        +.+....|++.+.+.++..++.++.|+++||+|||+.++.+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   75 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDL--------GSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTF   75 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHH
Confidence            44556677777888888889999987653        5556678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (273)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--  167 (273)
                      +..++..++...++   ++.+++.|++.|+ +.+...+...+++.|.+|+++|+++.++......+|..+||.+++.+  
T Consensus        76 ~~~~~~~~~~~~~~---~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711        76 AFTLGSLLCGVAPN---LELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             HHHHHHHHHhCcCC---HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence            99999999888888   8999999999998 55666689999999999999999999999999999999999998877  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          168 --STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                        +|++.|++.+.+.++..++..+..||++
T Consensus       152 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       152 NYHWRWIFLINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             CcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence              8999999888777766666566666643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.87  E-value=3.5e-20  Score=162.01  Aligned_cols=230  Identities=14%  Similarity=0.138  Sum_probs=155.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      +.+...+...+......+...+.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~  107 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNL--------NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL  107 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            3444445555556666666777788775543        56667778888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~-  166 (273)
                      .+...++.++..+.++   ++.+++.|++.|+ +.+.. .....+++|++|+++|++++|+.+...++|..+++.+... 
T Consensus       108 ~~~~~~~~~~~~~~~s---~~~l~~~r~l~G~-~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        108 LMLTAPAVFCMSLVSS---ATGFIAVRFFIGF-SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888877   7888899999998 44444 3456688999999999999999987777776666443321 


Q ss_pred             ------------hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccch
Q 024030          167 ------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS  234 (273)
Q Consensus       167 ------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (273)
                                  .+||+.|++.+++.++..++..+ +++++++.+.++            .   +++.+.  +  +  .+
T Consensus       183 ~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~-~~~~~p~~~~~~------------~---~~~~~~--~--~--~~  240 (476)
T PLN00028        183 FPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT-LGQDLPDGNYRE------------L---KKSGTM--P--K--DS  240 (476)
T ss_pred             HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH-HcCcCCCCchhh------------H---HhcCcc--c--c--cc
Confidence                        37999999988887766655444 443222111000            0   000000  0  0  01


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       235 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      ..+.++...++++++...+..++.........+++|.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  278 (476)
T PLN00028        241 FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEY  278 (476)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            22233345677888877776665555545555556554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=6e-20  Score=156.93  Aligned_cols=176  Identities=19%  Similarity=0.227  Sum_probs=147.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      |-+...+...+....+.....+.+|.+.++.        +.+..+.++..+.+.++..+++++.|+++||+|||+.+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~   74 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADL--------NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG   74 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence            3445556667777778788888999987653        56667789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .+...++...+...++   .+.+++.|++.|+ +.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++.+
T Consensus        75 ~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473         75 AALFIIASLLCSLAET---SSLFLAGRFLQGI-GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888888777   7888899999998 56666678899999999999999999999999999999999988765


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          168 ----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                          +|++.+++.+++.++..++..+..||++
T Consensus       151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence                7899999888777766666556667653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.87  E-value=2.6e-20  Score=161.98  Aligned_cols=215  Identities=13%  Similarity=0.059  Sum_probs=150.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHhhhchhhH
Q 024030           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS-ISFFYAYYALRTLTAMVCEGSI  125 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~  125 (273)
                      +.+....|++.+...++..+++++.|+++||+|||++++.+.++.+++.+++.+.+. ..+++.+++.|++.|+ +.+..
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi-~~g~~  137 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGMG  137 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH-HHhcc
Confidence            566678899999999999999999999999999999999999988888877776531 1126778888999998 55555


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030          126 NCLALAYVADNISERQRASAFGILLGVLSASFV-CGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (273)
Q Consensus       126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (273)
                      .+.....+.|++|+++|++++++.+.+.++|.. .+|+++..+    +||+.|++.++..++..++..+++||++++...
T Consensus       138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~  217 (452)
T PRK11273        138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL  217 (452)
T ss_pred             chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC
Confidence            577778889999999999999999999998864 456543222    899999998877777666656777776543211


Q ss_pred             CCCCCCCCCCCCcccccCCCCCCCccccccccchHHHH-HHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      +++.+..        ++.+++.+..++.   ..+.++. .+.++|+|.++...+..++......+..+++|.|+
T Consensus       218 ~~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l  280 (452)
T PRK11273        218 PPIEEYK--------NDYPDDYNEKHEQ---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL  280 (452)
T ss_pred             CChhhhh--------hccccccccccCC---CccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1000000        0000000000000   0122222 23367889999988888888887778888888774

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.87  E-value=4.2e-20  Score=158.47  Aligned_cols=224  Identities=15%  Similarity=0.138  Sum_probs=165.9

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      +..+....+...+......|.+|.+.++        ++.+..+.|++.+.+.++..+++++.|++.||+|||+++..+.+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~--------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~   76 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQA--------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLF   76 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            4445555666667777778899988544        36677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (273)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--  167 (273)
                      +.+++..++......++++.+++.|++.|+ +.+...+..++++.+..|+++|++..++.+...++|..+||.+++.+  
T Consensus        77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~  155 (410)
T TIGR00885        77 LYALGAFLFWPAAEIMNYTLFLVGLFILTA-GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL  155 (410)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHh-hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999888776543322228889999999998 67777788999999999999999999999999999999998887644  


Q ss_pred             ----------------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCC
Q 024030          168 ----------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE  219 (273)
Q Consensus       168 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (273)
                                                  +||++|.+.+++.++..++. .+.+.++.+++++                  
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~-~~~~~p~~~~~~~------------------  216 (410)
T TIGR00885       156 SNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI-MLTKMPALNHSDA------------------  216 (410)
T ss_pred             cCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCcccc------------------
Confidence                                        48999988877665554432 2222221111000                  


Q ss_pred             CCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          220 SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                          . ++      +.++..+.++|+|+++...+..|++...+.+..++++.|
T Consensus       217 ----~-~~------~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y  258 (410)
T TIGR00885       217 ----K-QI------SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQY  258 (410)
T ss_pred             ----c-cc------cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0 00      111112235678898888888888888887777766665

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.87  E-value=3e-21  Score=168.54  Aligned_cols=231  Identities=13%  Similarity=0.048  Sum_probs=159.7

Q ss_pred             HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (273)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  100 (273)
                      ........+..|.+.+|        ++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+...+.....+.
T Consensus        42 y~~r~~~~~~~~~i~~~--------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~  113 (467)
T PRK09556         42 YLIRKNFKAAQNDMIST--------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGA  113 (467)
T ss_pred             HHHhcChhhhhHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHH
Confidence            33444555667776544        3667788999999999999999999999999999999998887777766655543


Q ss_pred             -----ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------h
Q 024030          101 -----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-------S  168 (273)
Q Consensus       101 -----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-------~  168 (273)
                           .++   ++.+++.|++.|+ +.+...+...++++|++|+++|++++|+.....++|..+++.+..++       +
T Consensus       114 ~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~  189 (467)
T PRK09556        114 SLGSGSVS---LGLMIALWALSGF-FQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGH  189 (467)
T ss_pred             HHhcccch---HHHHHHHHHHHHH-HHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCc
Confidence                 355   8899999999998 55656688899999999999999999999999999999998776543       3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHH-HHHHHhhcch
Q 024030          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD-LICLLRSSVT  247 (273)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~  247 (273)
                      |+..|.+.+++.++..++.++..++++++.+..++.+..    ++..  .++++.  .+ .++ .+.++ ..+...|+|.
T Consensus       190 ~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~----~~~~--~~~~~~--~~-~~~-~~~~~~~~~~~l~~~~  259 (467)
T PRK09556        190 VIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIF----GEPI--SEEDKE--TE-STD-MTKWQIFVEYVLKNPV  259 (467)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcc----cCcc--chhhhc--cc-ccc-CcHHHHHHHHHHcChH
Confidence            777777777766665555455555543322211100000    0000  000000  00 000 01122 2233678899


Q ss_pred             hHHHHHHHHHhccccccceeeeeccC
Q 024030          248 LSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      ++...+..++....+.+..+|.|.|+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl  285 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYA  285 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888888888774

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.87  E-value=1.2e-20  Score=161.48  Aligned_cols=176  Identities=14%  Similarity=0.184  Sum_probs=144.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++.+...++..+...+......+..|.+.++.        +.+..+.|++.+.+.++..+++++.|.++||+|||++++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF--------GLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            44556667777888888888888888875443        6666788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +.+..+++..+..+.++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        83 SIVLFSAGTLACGFAPG---YITMFIARLVIGI-GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888887   8899999999998 5566668899999999999999999999999999999999988776


Q ss_pred             h----h--hHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          167 L----S--TTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       167 l----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      +    +  |++.|.+.++..++.. ......||++
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~  192 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAE  192 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence            5    4  8988887654444433 3344566654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.87  E-value=5.1e-20  Score=158.64  Aligned_cols=225  Identities=15%  Similarity=0.117  Sum_probs=162.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.+...+...++..++..+..+.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489         16 HPAFRAVFIARFISIFGLGLLGVAVPVQIQMM--------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            45566667777888888888899999998664        4456788999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHh-----ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (273)
Q Consensus        87 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp  161 (273)
                      +..+..++......     .++   ++.+++.|++.|+ +.+...+...+++.|.+|+++|+++.++.....++|..+||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  163 (417)
T PRK10489         88 ARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGF-FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP  163 (417)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence            87776665544332     233   7788889999998 55666678889999999999999999999999999999999


Q ss_pred             HHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHH
Q 024030          162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (273)
Q Consensus       162 ~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (273)
                      .+++.+    +|++.|.+.++..++..+. .+.+|+++++++++                           .+..++.++
T Consensus       164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~---------------------------~~~~~~~~~  215 (417)
T PRK10489        164 ALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPALPPPPQPR---------------------------EHPLRSLLA  215 (417)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCCCCCCccc---------------------------ccchHHHHH
Confidence            998876    6888888776665554443 44556543221110                           000112333


Q ss_pred             HHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       238 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      .++..+++|.++...+..++... ..+.+.++|.|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~  249 (417)
T PRK10489        216 GFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPAL  249 (417)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHH
Confidence            44456778887766655554433 34455566655

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.86  E-value=3.8e-20  Score=160.38  Aligned_cols=215  Identities=13%  Similarity=0.087  Sum_probs=150.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHhhhchhhH
Q 024030           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~  125 (273)
                      +.+..+.|++.+++.++..+++++.|+++||+|||+.+..+.++..++..+....++. .+++.+.+.|++.|+ +.+..
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~-~~g~~  135 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW-FQGMG  135 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-Hhhcc
Confidence            5666778999999999999999999999999999999999988888887776654321 126677788999997 55655


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (273)
Q Consensus       126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (273)
                      .+.....+.|++|+++|++++++.+...++|..++|.+.+.     .+||..|++.+++.++..+..++.+||++++.+.
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  215 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL  215 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence            67788899999999999999999999999999888766543     2799999998888877666656677775443211


Q ss_pred             CCCCCCCCCCCCcccccCCCCCCCccccccccchHHHH-HHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      ++..+..++       ..++..+. ++  ++. +.++. .+..+|+|.++...+..++.....++..+++|.|+
T Consensus       216 ~~~~~~~~~-------~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l  278 (438)
T TIGR00712       216 PPIEEYRND-------YPDDYNEK-AE--QEL-TAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYL  278 (438)
T ss_pred             CCchhcccc-------cccccccc-cc--ccc-chHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            100000000       00000000 00  000 11221 23367889999888887777777777777777763

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.86  E-value=8.3e-20  Score=156.71  Aligned_cols=183  Identities=21%  Similarity=0.228  Sum_probs=148.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~   84 (273)
                      ++++.+...++..++...+.....+++|.+.++. +.+  .......+.|++.+++.++..+++++.|+++||+|||+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~   87 (408)
T PRK09874         11 NWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQL-GVT--GHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML   87 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-CCc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH
Confidence            4566777778888888889899999999998773 111  1122234568899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                      ..+.+...++..++...++   ++.+++.|++.|+ +.+.. +...+++.|..|+++|++++++......+|..++|.++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  162 (408)
T PRK09874         88 LRSALGMGIVMVLMGLAQN---IWQFLILRALLGL-LGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG  162 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-hhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888877777777   8889999999998 44544 77788899999999999999999999999999999988


Q ss_pred             HHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          165 RFL----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       165 ~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      +.+    +|++.|.+.+++.++..+...+..||++
T Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (408)
T PRK09874        163 GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF  197 (408)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            875    7899998888777666666556666643

>PRK11043 putative transporter; Provisional

Probab=99.86  E-value=1.3e-19  Score=155.38  Aligned_cols=165  Identities=21%  Similarity=0.191  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHH
Q 024030           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (273)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~   95 (273)
                      ...+......+..|.+|.+.++        ++.+..+.|++.+++.++..++++++|+++||+|||+.+..+..+..++.
T Consensus        14 ~~~~~~~~~~~~~p~~~~i~~~--------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   85 (401)
T PRK11043         14 LSMLGFLATDMYLPAFKAIQAD--------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS   85 (401)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence            3444455566677777776544        36677789999999999999999999999999999999999998888888


Q ss_pred             HHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHH
Q 024030           96 AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTS  171 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~  171 (273)
                      ....+.++   ++.+++.|++.|+ +.+...+...+++.|.+|++++++..+.......++..++|.+++.+    +|++
T Consensus        86 ~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  161 (401)
T PRK11043         86 LGMLWVES---AAQLLVLRFVQAV-GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQA  161 (401)
T ss_pred             HHHHHhcC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Confidence            88888877   8889999999998 44555567788999999999999999998888889999999888776    8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q 024030          172 AFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      .|++.++..++..+. .+..+|
T Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~  182 (401)
T PRK11043        162 IFATLFAITLLLILP-TLRLKP  182 (401)
T ss_pred             HHHHHHHHHHHHHHH-HHHcCC
Confidence            998887777665554 334444

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.86  E-value=5.8e-20  Score=158.95  Aligned_cols=168  Identities=11%  Similarity=0.020  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~   92 (273)
                      ..+..++..+....+....|...++....+.+  .....+.+.+.+...++..++++++|+++||+|||+++..+.+++.
T Consensus        27 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~  104 (432)
T PRK10406         27 ASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNT--TTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMC  104 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34556677777777666666554443211111  1222334555566677778999999999999999999999999999


Q ss_pred             HHHHHHHhccCch-----hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 024030           93 IPLAILAYRRSIS-----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR--  165 (273)
Q Consensus        93 ~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~--  165 (273)
                      ++..+.++.++..     ....+++.|+++|+ +.|...+...+++.|++|+++|+++.++...+...|..+++.+..  
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  183 (432)
T PRK10406        105 FGSLVIACLPGYETIGTWAPALLLLARLFQGL-SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL  183 (432)
T ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988877621     12468899999998 666666899999999999999999999988888888777765432  


Q ss_pred             ----------HhhhHHHHHHHHHHHHHH
Q 024030          166 ----------FLSTTSAFQAATIVSMLA  183 (273)
Q Consensus       166 ----------~l~~~~~~~~~~~~~~~~  183 (273)
                                ..+||.+|++.++..++.
T Consensus       184 ~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        184 QQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence                      238999998876665543

>TIGR00895 2A0115 benzoate transport

Probab=99.86  E-value=1.2e-20  Score=160.95  Aligned_cols=171  Identities=20%  Similarity=0.240  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHH
Q 024030           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (273)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~   93 (273)
                      ....+..........+..|.+.++        ++.+..+.|++.+...++..++.++.|+++||+|||+.+..+.++..+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        23 FLIMLMDGYDLAAMGFAAPAISAE--------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhhc--------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444445555566677777544        255667789999999999999999999999999999999999988888


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hh
Q 024030           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----ST  169 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~  169 (273)
                      +..+..+.++   ++.+++.+++.|+ +.+...+...+++.|.+|+++|++++++......+|..++|.+++.+    +|
T Consensus        95 ~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        95 FTLLCALATN---VTQLLILRFLAGL-GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHccc---hHHHHHHHHHHhc-ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            8888888777   8888999999998 55666689999999999999999999999999999999999988776    78


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          170 TSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      +..+.+.+++..+..++.....||+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESID  197 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence            888888766666655555666777643

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.85  E-value=6.7e-20  Score=155.49  Aligned_cols=172  Identities=18%  Similarity=0.248  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH-HHHHHH
Q 024030           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL-PLTLSI   92 (273)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~   92 (273)
                      .+..++..++.....|.+|.|+++       +++.+..+.|++.+.+.+...+.+++.|+++||+||||.++. +.....
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~   75 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSE-------EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA   75 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHc-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            345677788888999999999754       336677889999999999999999999999999999987654 555556


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHH--HHHHHHHHHHHHHHHHHHHHHh---
Q 024030           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASA--FGILLGVLSASFVCGTLAARFL---  167 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~gp~~~~~l---  167 (273)
                      ++..++.+.++   ++.+++.|++.|. ..+...+...++..|..|+++|+++  .+......++|..+||.+++.+   
T Consensus        76 ~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  151 (375)
T TIGR00899        76 LACLLFAWNRN---YFLLLVLGVLLSS-FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG  151 (375)
T ss_pred             HHHHHHHhcch---HHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence            66667777777   7888888888886 4455567888888998887777654  5777788889999999888766   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          168 -STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                       +||+.|++.++..++..++.++.+||.++
T Consensus       152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence             78999999888777666665666777543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.85  E-value=8.1e-20  Score=154.66  Aligned_cols=159  Identities=18%  Similarity=0.156  Sum_probs=129.3

Q ss_pred             HHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC
Q 024030           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS  103 (273)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  103 (273)
                      .+...+..|.+.++        ++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++..++...+.+.++
T Consensus        19 ~~~~~~~~~~~~~~--------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~   90 (377)
T TIGR00890        19 VYTWTLLAPPLGRY--------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS   90 (377)
T ss_pred             HhhhhhHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH
Confidence            44556677777544        3677788999999999999999999999999999999999999999999988888888


Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHH
Q 024030          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIV  179 (273)
Q Consensus       104 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~  179 (273)
                         ++.+++.|++.|+ +.+...+.....+.+++| ++|+++.++.....++|..+++.+.+.+    +||+.|.+.++.
T Consensus        91 ---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        91 ---LAALYLTYGLASA-GVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             ---HHHHHHHHHHHhH-HHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence               8999999999998 555555677778888887 6799999999999999987655444433    799999998888


Q ss_pred             HHHHHHHHHHHhcCCC
Q 024030          180 SMLAAAYMRVFLKDDV  195 (273)
Q Consensus       180 ~~~~~~~~~~~~~~~~  195 (273)
                      .++..+...+..++++
T Consensus       166 ~~~~~~~~~~~~~~~~  181 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPP  181 (377)
T ss_pred             HHHHHHHHHHheecCc
Confidence            7777666555565543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.85  E-value=1.2e-20  Score=164.86  Aligned_cols=212  Identities=13%  Similarity=0.087  Sum_probs=156.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHhhhch
Q 024030           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCE  122 (273)
Q Consensus        45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~  122 (273)
                      +++.+..+.|++.+.+.+++.+++++.|+++||+|||+.+..+.++..++..+....  .+   ++.+++.|+++|+ +.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~  145 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG---IALVVFCRVIQGL-AQ  145 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHH-hc
Confidence            567888999999999999999999999999999999999999988888777665433  33   6778899999998 66


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (273)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      +...+....+++|++|+++|++++++...+..+|..++|.+++.+     +|+.+|++.++..++..++.+...+|+++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~  225 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI  225 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence            777789999999999999999999999999999999999887765     788899998887766655544445554432


Q ss_pred             CCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          198 DDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      +++.++.      .++..++..++++.  + .+...+++    .+.++|.++...+..++.......+.+++|.|+
T Consensus       226 ~~~~~~~------~~~~i~~~~~~~~~--~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l  288 (465)
T TIGR00894       226 HPCISKF------EKKYINSSLQGQKG--S-TRQSLPIK----AIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFI  288 (465)
T ss_pred             CCCCCHH------HHHHHHhhcccccC--C-CCCCCCHH----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211000      00000000000000  0 01111333    367889999999999999988888888888774

>PRK03699 putative transporter; Provisional

Probab=99.85  E-value=9.3e-20  Score=155.87  Aligned_cols=170  Identities=14%  Similarity=0.108  Sum_probs=138.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~   84 (273)
                      ++++..+..++..++.........+.+|.+.++        ++.+..+.|++.+.+.++..+++++.|+++||+|||+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~--------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~   75 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEY--------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL   75 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            344555555666666666666777788887654        366777889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                      ..+.++..++..+..+.++   ++.+++.|++.|+ +.+...+...+++.|.+|+++|+++++..+....+|..++|.+.
T Consensus        76 ~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  151 (394)
T PRK03699         76 IFGFALMILAVAGLMFSHS---LALFSIAMFVLGV-VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA  151 (394)
T ss_pred             HHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHH-hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888888777   8889999999998 55656678889999999999999999999888888888888876


Q ss_pred             HHh-----hhHHHHHHHHHHHHHHHHH
Q 024030          165 RFL-----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       165 ~~l-----~~~~~~~~~~~~~~~~~~~  186 (273)
                      +.+     +||++|.+.++..++..++
T Consensus       152 ~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        152 AYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            654     7999998877766555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.85  E-value=6.9e-20  Score=156.58  Aligned_cols=145  Identities=9%  Similarity=0.071  Sum_probs=123.0

Q ss_pred             HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc
Q 024030           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (273)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  104 (273)
                      ....+.+|.+.+|        ++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.+.++++ 
T Consensus        26 ~~~~~~lp~i~~~--------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~-   96 (393)
T PRK09705         26 TSVGPLLPQLRQA--------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ-   96 (393)
T ss_pred             hccchhHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc-
Confidence            5566788888654        3677788999999999999999999999999999999999999999999999999998 


Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHH
Q 024030          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIV  179 (273)
Q Consensus       105 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~  179 (273)
                        ++.+++.|++.|+ +.+...+...+.+.+++| ++|++++++...+...|..+|+.+++.+     +||..+...++.
T Consensus        97 --~~~ll~~r~l~Gi-g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705         97 --SALLLSSALLGGV-GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             --hHHHHHHHHHHHh-HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence              8899999999998 666666788889999987 7899999999888888887777776654     788877665554


Q ss_pred             HHH
Q 024030          180 SML  182 (273)
Q Consensus       180 ~~~  182 (273)
                      .++
T Consensus       173 ~~~  175 (393)
T PRK09705        173 AVV  175 (393)
T ss_pred             HHH
Confidence            433

>PRK10133 L-fucose transporter; Provisional

Probab=99.85  E-value=4.3e-19  Score=153.50  Aligned_cols=144  Identities=16%  Similarity=0.151  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      +..+....+...+......+.+|.+.++        ++.+..+.|+..+.+.++..+++++.|+++||+|||+++..+..
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~--------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~   99 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDILLPQFQQA--------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            3444555555666677777888887433        36677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH---HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           90 LSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus        90 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                      +..++.+++   ...++   ++.+++.|++.|+ +.+...+..++++.|..|+++|.+.+++.+....+|..+||.+++
T Consensus       100 ~~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~-g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        100 LYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988775   34566   8899999999998 667777899999999887777777899999999999999987754

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.4e-20  Score=161.92  Aligned_cols=215  Identities=15%  Similarity=0.117  Sum_probs=171.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (273)
Q Consensus        44 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  123 (273)
                      .++..+..+.|++.+.++.|+++++.+.|+++||+|.|+++..+.++.+++.++...+.+.+ ++.+++.|+++|+ +.|
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl-~~g  143 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGL-GQG  143 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHH-HHh
Confidence            46788899999999999999999999999999999999999999999999999888766544 4578999999998 778


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (273)
                      ..+|+...+.++|.|++||++..++...+..+|.+++-+++|.+     ||+.+|++.+.++++..++..++..|++.++
T Consensus       144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h  223 (466)
T KOG2532|consen  144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH  223 (466)
T ss_pred             HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence            88899999999999999999999999999999999998777776     8999999999999888877566666655543


Q ss_pred             CCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          199 DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      +..+         .++.+..+++...++..++...++++    +.++|.+|...+..++.+.+.+.+..+.|.|+
T Consensus       224 ~~is---------~~El~~I~~~k~~~~~~~~~~vP~~~----i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~  285 (466)
T KOG2532|consen  224 PNIS---------EKELKYIEKGKSEAHVKKKPPVPYKA----ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYL  285 (466)
T ss_pred             CCCC---------HHHHHHHHhcccccccCCCCCCCHHH----HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3210         00011001110111111112335654    77899999999999999999999999999985

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.85  E-value=4.8e-19  Score=151.64  Aligned_cols=219  Identities=14%  Similarity=0.084  Sum_probs=163.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.++...+.........++..+..+.+.+       .+++++..+.+++.++..++..+++++.|++.||+|.|+++.+
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-------~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~  105 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNK-------IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF  105 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            356666666666666666777777666643       2457888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc-----cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH--
Q 024030           87 PLTLSIIPLAILAYR-----RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC--  159 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~--  159 (273)
                      +.++..+......+.     ++   ++.+++.|++.|+ + +...+.....+++++|+++||+++|+.....++|..+  
T Consensus       106 ~~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gi-g-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        106 STAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGF-A-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHH-H-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            999988888887765     55   8999999999998 4 4455889999999999999999999996666666544  


Q ss_pred             --HHHHHH------------------HhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCC
Q 024030          160 --GTLAAR------------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE  219 (273)
Q Consensus       160 --gp~~~~------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (273)
                        +|.+.+                  ..+|+.+..+..++.++..++.++..++.++ ++.                   
T Consensus       181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~~~-------------------  240 (462)
T PRK15034        181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-SRA-------------------  240 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-ccc-------------------
Confidence              444332                  2236666667766666666554555443221 111                   


Q ss_pred             CCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          220 SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                                    +.++.. ...|+|+.|...+.+++....+.++..++|+|
T Consensus       241 --------------~~~~~~-~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~  278 (462)
T PRK15034        241 --------------SIADQL-PVLQRLHLWLLSLLYLATFGSFIGFSAGFAML  278 (462)
T ss_pred             --------------CHHHHH-HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          122222 26788999999999999988888888888876

>PRK09952 shikimate transporter; Provisional

Probab=99.85  E-value=1.8e-19  Score=156.04  Aligned_cols=171  Identities=14%  Similarity=0.079  Sum_probs=125.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++.....++..++..+.........|.+..+..-++.++. ..........++..++..+++++.|+++||+|||+++..
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~   99 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence            4445555667777777777666666655544221111111 111122223345667788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHH--------HHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV  158 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  158 (273)
                      +.++..++..+++++++   ++        .+++.|+++|+ +.+...+...+++.|++|+++|++..+....+..+|..
T Consensus       100 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~  175 (438)
T PRK09952        100 TVWMMGIATALIGLLPS---FSTIGWWAPVLLVTLRAIQGF-AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL  175 (438)
T ss_pred             HHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999888   44        57889999998 56666688899999999999999999999999899888


Q ss_pred             HHHHHHHH------------hhhHHHHHHHHHHHHH
Q 024030          159 CGTLAARF------------LSTTSAFQAATIVSML  182 (273)
Q Consensus       159 ~gp~~~~~------------l~~~~~~~~~~~~~~~  182 (273)
                      +++.+...            .+||.+|.+.++..++
T Consensus       176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            88655432            4899999887665443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.84  E-value=9.9e-20  Score=155.92  Aligned_cols=169  Identities=10%  Similarity=0.096  Sum_probs=137.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~   84 (273)
                      ++++++..+.+..++..++..+..|.+|.++++.       ++.+..+.|++.+.+.++..+++++.|+++||+|||+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV   84 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence            4467778888888999999999999999987552       366778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc---C--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 024030           85 TLPLTLSIIPLAILAYRR---S--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (273)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (273)
                      ..+.+...++...+.+..   +  ...++.+++.|++.|+ +.+...+...+++.|..|+++|++++++......+|..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  163 (399)
T PRK05122         85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI-GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI  163 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh-hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence            999888777655544321   1  1125678899999998 666666888889999999999999999999999999999


Q ss_pred             HHHHHHHh----hhHHHHHHHHHHHH
Q 024030          160 GTLAARFL----STTSAFQAATIVSM  181 (273)
Q Consensus       160 gp~~~~~l----~~~~~~~~~~~~~~  181 (273)
                      ||.+++.+    +|+..+.+..++.+
T Consensus       164 g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        164 GAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            99888776    77877766554443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.84  E-value=3e-19  Score=156.84  Aligned_cols=183  Identities=17%  Similarity=0.088  Sum_probs=134.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++.+....++.++..+....+....|...++. .++.++ ..+........++..++..++++++|+++||+|||+++..
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVF-FPGADP-SVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            34455556778888888877777777655443 222222 1111111112477889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHH--------HHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV  158 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  158 (273)
                      +.+++.++.++++++++   ++        .+++.|+++|+ +.|...+...++++|++|+++|++..++...+..+|..
T Consensus        93 ~~~l~~i~~~~~a~~~~---~~~~g~~a~~~l~~~R~l~G~-g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~  168 (490)
T PRK10642         93 TIVIMSISTFCIGLIPS---YATIGIWAPILLLLCKMAQGF-SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV  168 (490)
T ss_pred             HHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHh-HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999888   54        37889999998 55666689999999999999999999999888888877


Q ss_pred             HHHHHHH------------HhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          159 CGTLAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       159 ~gp~~~~------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      +|+.+..            ..+||++|++.++..++...+ ....||+++
T Consensus       169 lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~-~~~~~esp~  217 (490)
T PRK10642        169 LGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYL-RHALEETPA  217 (490)
T ss_pred             HHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHH-HHcCCCChh
Confidence            7764432            237999999876555443333 455677644

>PRK12382 putative transporter; Provisional

Probab=99.84  E-value=1.6e-19  Score=154.32  Aligned_cols=163  Identities=15%  Similarity=0.078  Sum_probs=130.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~   85 (273)
                      +++.++...+..++..++.++..|.+|.++++.       ++.+..+.|++.+.+.++..+++++.|+++||+|||++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~   85 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL   85 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH
Confidence            355677777788888888889999999987542       3667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILA---YRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (273)
Q Consensus        86 ~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (273)
                      .+.+...++.+.+.   ..+.  ..+++.+++.|++.|+ +.+...+...+++.|.+|+++|++++++.+...+.|..+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g  164 (392)
T PRK12382         86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF-GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG  164 (392)
T ss_pred             HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence            88877665543322   2111  1237888999999998 5566667888899999999999999999999999999999


Q ss_pred             HHHHHHh----hhHHHHHHH
Q 024030          161 TLAARFL----STTSAFQAA  176 (273)
Q Consensus       161 p~~~~~l----~~~~~~~~~  176 (273)
                      |.+++.+    +|+..+.+.
T Consensus       165 ~~~~~~l~~~~g~~~~~~~~  184 (392)
T PRK12382        165 APLGLLLHSHFGFAALALTT  184 (392)
T ss_pred             HHHHHHHHhccChHHHHHHH
Confidence            9988776    666655444

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.84  E-value=7.8e-19  Score=154.71  Aligned_cols=180  Identities=14%  Similarity=0.148  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHH
Q 024030           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (273)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~   91 (273)
                      ...++.+...+.........|.+-.+..   ..+...+..+.+++.+...++..++.++.|+++||+|||+++.++.++.
T Consensus        20 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~   96 (502)
T TIGR00887        20 IAGVGFFTDSYDLFCISLVTKMLGYVYY---HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIM   96 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            3445556666666666666776544321   1122445567789999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhccCch---hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024030           92 IIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (273)
Q Consensus        92 ~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-  167 (273)
                      .++..+..+.++..   .++.+++.|++.|+ +.+...+....++.|++|+++|++++++.+....+|..+++.++..+ 
T Consensus        97 ~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887        97 IIATVASGLSPGSSPKSVMATLCFWRFWLGV-GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHHccCcccchHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777654321   15678999999998 66666689999999999999999999999999999998888765432 


Q ss_pred             --------------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          168 --------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       168 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                                                +||+.+.+.++..++..+. .+++||+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr  229 (502)
T TIGR00887       176 AGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPR  229 (502)
T ss_pred             HHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHH
Confidence                                      5999987665554444443 677899876

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.84  E-value=1.2e-19  Score=163.76  Aligned_cols=163  Identities=16%  Similarity=0.164  Sum_probs=132.0

Q ss_pred             HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (273)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  100 (273)
                      .+....+.+.+|.+..+        ++.+....|++.+++.++.+++++++|+++||+|||++++++.++..++.++..+
T Consensus       180 g~d~~~is~ilp~i~~~--------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af  251 (742)
T TIGR01299       180 GVEVFVVGFVLPSAEKD--------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF  251 (742)
T ss_pred             HHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            33344556667766544        2556677899999999999999999999999999999999999988888888888


Q ss_pred             ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q 024030          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-------------  167 (273)
Q Consensus       101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-------------  167 (273)
                      +++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++.+++...+..+|.++++.++..+             
T Consensus       252 a~s---~~~llv~R~l~G~-g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~  327 (742)
T TIGR01299       252 VQG---YGFFLFCRLLSGF-GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA  327 (742)
T ss_pred             Hhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence            877   8999999999998 55656689999999999999999999999999999999888765432             


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                          +||+.+++.++..++. ++..+++||+++
T Consensus       328 ~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPr  359 (742)
T TIGR01299       328 YQFHSWRVFVIVCAFPCVFA-IGALTFMPESPR  359 (742)
T ss_pred             cccccHHHHHHHHHHHHHHH-HHHHHHcCCCHH
Confidence                4788777766554444 444677899864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=6e-21  Score=155.35  Aligned_cols=180  Identities=22%  Similarity=0.284  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHHHHhhcC------------------------------------------CCCcchhHH
Q 024030           12 HLFVTVFLWGFATMMVVPAITDVTMMALC------------------------------------------PGLDECSLA   49 (273)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~   49 (273)
                      ......+..+.....+.|.+|.|+.|..+                                          ......+..
T Consensus        25 iv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~e  104 (464)
T KOG3764|consen   25 IVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLDRE  104 (464)
T ss_pred             EEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcccc
Confidence            33556667777788889999999988542                                          001233445


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHH
Q 024030           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA  129 (273)
Q Consensus        50 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  129 (273)
                      ..+.|++++...+.+++.+|+.|.+.||+|+|..+++|...+..+.+++++.++   ++.++++|.++|+ +.++..+..
T Consensus       105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgv-gsA~~~tsg  180 (464)
T KOG3764|consen  105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGV-GSAFADTSG  180 (464)
T ss_pred             ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhh-hHHHHHhhh
Confidence            578899999999999999999999999999999999999999999999999999   9999999999999 677777899


Q ss_pred             HHHHHhcCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          130 LAYVADNISER-QRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       130 ~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      .++++|.+|+| +|++++|+...+.++|..+||.+||.+    |.+.+|.+.+++.++...+..+.+++++
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence            99999999876 589999999999999999999999998    7799999999999988888666665543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.83  E-value=4.4e-19  Score=146.09  Aligned_cols=227  Identities=15%  Similarity=0.085  Sum_probs=177.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~   85 (273)
                      .+|+++...+...+.....++..+..+.+        ++++++|..+.+++.++..+...+..++.|.+.||+|.|++..
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i--------~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~   83 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFI--------KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI   83 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence            35566666666656555556666666655        3566899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH----HHHHH
Q 024030           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS----FVCGT  161 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g----~~~gp  161 (273)
                      .+.++..+..+...+..+.+++|.+++.+++.|+ +++.+ +...+++++++|+|++|.++|+.. ..|+|    ..++|
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P  160 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-AGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP  160 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence            9999999988888887776657899999999998 44444 789999999999999999999997 66665    56667


Q ss_pred             HHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHH
Q 024030          162 LAARFLS---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (273)
Q Consensus       162 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (273)
                      .+....+   |+....+..+..++..+..++..++.+..+...                        ++..    +  ..
T Consensus       161 ~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~------------------------~~~~----~--~~  210 (417)
T COG2223         161 LVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV------------------------KPQL----P--AQ  210 (417)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc------------------------cccc----h--hH
Confidence            7777777   888888888888887777777777655432221                        0111    0  22


Q ss_pred             HHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       239 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      ++.+.++++.|.+.+.++...-++.++..++|.|+
T Consensus       211 ~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~  245 (417)
T COG2223         211 LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYL  245 (417)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33477899999999999999999999988888774

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.83  E-value=5.2e-20  Score=165.15  Aligned_cols=238  Identities=14%  Similarity=0.168  Sum_probs=165.8

Q ss_pred             HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (273)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  100 (273)
                      .+......+.++.+        +.+++++..+.|++.+.+.++..++.++.|++.||+|||+.+.++.++++++.+++++
T Consensus        46 ~~~~g~~~~~l~~i--------ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al  117 (633)
T TIGR00805        46 LLYNGLVNSSLTTI--------ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL  117 (633)
T ss_pred             HHHHHHHHhhchhh--------hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence            33334444555554        3345677788899999999999999999999999999999999999999999888765


Q ss_pred             cc----------------------------C--------------------chhHHHHHHHHHHHhhhchhhHHHHHHHH
Q 024030          101 RR----------------------------S--------------------ISFFYAYYALRTLTAMVCEGSINCLALAY  132 (273)
Q Consensus       101 ~~----------------------------~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  132 (273)
                      .+                            +                    ...+..++++|++.|+ +.+...+...++
T Consensus       118 phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi-G~~~~~~~~~~~  196 (633)
T TIGR00805       118 PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI-GATPIFPLGISY  196 (633)
T ss_pred             hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc-cCCcchhcCchh
Confidence            42                            0                    0124567789999998 666666899999


Q ss_pred             HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHH
Q 024030          133 VADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------------------STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--------------------------~~~~~~~~~~~~~~~~~~~  186 (273)
                      +.|++|+++|++..++.+....+|..+|+++++.+                          +||..|++.+++.++..+.
T Consensus       197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988764                          1566787777776665554


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccce
Q 024030          187 MRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQ  266 (273)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  266 (273)
                       ++.+|++.++..++.+.+..+   ++..+..+  ++..........+..+..+.+++||.++...+..++......++.
T Consensus       277 -l~~~p~~lp~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~  350 (633)
T TIGR00805       277 -FFFFPKALPKEGKRVNVDVHE---TEKLEKSE--DKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYI  350 (633)
T ss_pred             -HHhCccccCCcccccchhhhh---hhcccccc--cccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence             455666543221110000000   00000000  000000001112333445568899999999999999999999999


Q ss_pred             eeeeccC
Q 024030          267 ASFLVYI  273 (273)
Q Consensus       267 ~~~~~yl  273 (273)
                      +++|.|+
T Consensus       351 ~~lP~yl  357 (633)
T TIGR00805       351 TFLPKYL  357 (633)
T ss_pred             HHHHHHH
Confidence            9988874

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.82  E-value=5.6e-20  Score=148.91  Aligned_cols=151  Identities=22%  Similarity=0.402  Sum_probs=123.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhh
Q 024030           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS  124 (273)
Q Consensus        45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  124 (273)
                      +.+.+....|++-+.+++.+++.++.+|.++||+|||+++.+|++..++...+.+.+.+   +..+.+.|++.|+ ..|.
T Consensus        62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~---F~afv~aR~l~Gi-~kgn  137 (451)
T KOG2615|consen   62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN---FAAFVLARFLGGI-FKGN  137 (451)
T ss_pred             cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhh-ccCc
Confidence            33467788999999999999999999999999999999999999999999999999998   8677777999998 7777


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHH-H---HHHHHHHHHHHHHHhcCC
Q 024030          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST------TSAFQA-A---TIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~------~~~~~~-~---~~~~~~~~~~~~~~~~~~  194 (273)
                      . ....++++|++++++|+.+++..++..++|.++||.+|+++..      +.+|.. +   .++.+.......+++||+
T Consensus       138 l-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  138 L-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             h-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            7 7999999999999999999999999999999999999999844      122222 1   112222133445678998


Q ss_pred             CCCCCC
Q 024030          195 VPNDDD  200 (273)
Q Consensus       195 ~~~~~~  200 (273)
                      -+.+++
T Consensus       217 L~~rk~  222 (451)
T KOG2615|consen  217 LPLRKR  222 (451)
T ss_pred             ccchhh
Confidence            665554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.82  E-value=1.7e-18  Score=149.99  Aligned_cols=168  Identities=14%  Similarity=0.083  Sum_probs=125.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~   84 (273)
                      .|++.....++..++..+....+.+..|.+.+|. +.++.+.+. ....-.......+...+++++.|+++||+|||+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   89 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTF-FPAGNEFAS-LMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL   89 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCchHH-HHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence            4455666678888899999999999999887764 222222110 00011122233444467889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCchhHH--------HHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 024030           85 TLPLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (273)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  156 (273)
                      +.+..+..++..+++++++   ++        .+++.|++.|+ +.+...+....+++|++|+++|++++++.....++|
T Consensus        90 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g  165 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPG---YATIGLAAPLLVLLGRLLQGF-SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVA  165 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHH
Confidence            9999999999999998887   44        46889999998 556556788899999999999999999998888887


Q ss_pred             HHHHHHHHHH------------hhhHHHHHHHHH
Q 024030          157 FVCGTLAARF------------LSTTSAFQAATI  178 (273)
Q Consensus       157 ~~~gp~~~~~------------l~~~~~~~~~~~  178 (273)
                      ..+++.+++.            .+||++|++...
T Consensus       166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        166 VVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            7777666554            378999987543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.81  E-value=1.9e-18  Score=151.48  Aligned_cols=184  Identities=16%  Similarity=0.182  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (273)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~   90 (273)
                      ....++.+...+....+.+..|.+.++.......+.+.+..+.|++.+.+.++..++++++|+++||+|||+++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l   94 (479)
T PRK10077         15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL   94 (479)
T ss_pred             HHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            33344555555566666777777655543333344577788899999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhc---------cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030           91 SIIPLAILAYR---------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (273)
Q Consensus        91 ~~~~~~~~~~~---------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp  161 (273)
                      ..++....++.         ++....+.+++.|++.|+ +.|...+...++++|++|+++|++++++.+....+|..+++
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~  173 (479)
T PRK10077         95 FFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI-GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVY  173 (479)
T ss_pred             HHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh-hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence            88877666542         122224667899999998 66666689999999999999999999999999999999888


Q ss_pred             HHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          162 LAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       162 ~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      .+++.            .+||++|.+.++..++..+. .+++||+++
T Consensus       174 ~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~  219 (479)
T PRK10077        174 FVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPR  219 (479)
T ss_pred             HHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcH
Confidence            76543            27999999887766665444 566888754

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.81  E-value=6.1e-18  Score=147.99  Aligned_cols=231  Identities=16%  Similarity=0.175  Sum_probs=175.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~   85 (273)
                      ++|.+..++...++..++..+....++.+..+.        +-|+...|++.....+..++.++++|.++||++||++++
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l--------t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL--------TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            456778888999999999999998888887654        556778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAY--RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      .+-++..+....+.+  ..+..+.|.+++..++.|+ +.+...|+.++.+.|++|+++..+++++.+...+++..+||.+
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~-~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal  158 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI-GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL  158 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence            887766554433332  2222237888889999998 7788889999999999999999999999999999999999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHH
Q 024030          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (273)
Q Consensus       164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (273)
                      +|.+    |..+.|.+.++..++.... ....+++.++++.                          +.++..++.++.+
T Consensus       159 gG~Lva~~G~~~~f~inalsfl~~i~~-l~~~~~~~~~~~~--------------------------~~e~~~~~l~~G~  211 (524)
T PF05977_consen  159 GGILVAFFGAAAAFLINALSFLISILA-LLRWKPPPPPSSL--------------------------PRERFFSALREGL  211 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcccccccccc--------------------------chhhhhhhHHHHH
Confidence            9987    5567777766554444333 3333322111111                          1122234677888


Q ss_pred             HHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      +.++++|.++..++..+++++....+...+|+|
T Consensus       212 ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~  244 (524)
T PF05977_consen  212 RYVRSSPPLRSVLLRSFLFNLFASAVWALLPLF  244 (524)
T ss_pred             HHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHH
Confidence            889999999888887777777666666666654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.81  E-value=3.4e-18  Score=149.31  Aligned_cols=172  Identities=12%  Similarity=0.049  Sum_probs=145.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchh
Q 024030            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAM   83 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~   83 (273)
                      ++++.++.++...++..++++...+.+|.|+++.     ..++.+..+.|.+.+.+.++..++++++|+++|| +|||++
T Consensus         7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~   81 (475)
T TIGR00924         7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ-----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT   81 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence            3456777788888888999999999999998652     1246777889999999999999999999999999 899999


Q ss_pred             hHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhh---HHHHHHHHHHHHHHHHHHH
Q 024030           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ---RASAFGILLGVLSASFVCG  160 (273)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~g  160 (273)
                      +.++.++..++..++.+.++   .+.+.+.+.+.|+ +.|...+...++++|.+|+++   |+++.++.+...++|..+|
T Consensus        82 l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig  157 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS  157 (475)
T ss_pred             HHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence            99999999999888888776   6778888999998 666666889999999998754   8889999999999999999


Q ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHHH
Q 024030          161 TLAARFL----STTSAFQAATIVSMLAAA  185 (273)
Q Consensus       161 p~~~~~l----~~~~~~~~~~~~~~~~~~  185 (273)
                      |.+++.+    +|++.|.+.++..++..+
T Consensus       158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       158 PLLAGVIAENYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            9998876    789999887755544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.80  E-value=7.1e-18  Score=146.77  Aligned_cols=214  Identities=9%  Similarity=0.013  Sum_probs=142.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHH-HHHHHhhhchh
Q 024030           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA-LRTLTAMVCEG  123 (273)
Q Consensus        45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~~  123 (273)
                      +++.+....+++.+.+.+...++.++.|+++||+|||++++.+.++..++.+++++.++   ++.+++ .|++.|+ +.+
T Consensus        48 ~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~-~~~  123 (455)
T TIGR00892        48 IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGL-GLA  123 (455)
T ss_pred             HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHh-cch
Confidence            34666777889999999999999999999999999999999999888888888888777   666654 5688888 445


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (273)
                      ...+...+.+.++++ ++|+++.++.+.+..+|..++|.+++.+    +||++|++.+++.++..+..++..++.+.++.
T Consensus       124 ~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~  202 (455)
T TIGR00892       124 FNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRV  202 (455)
T ss_pred             hhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            444566778889886 7899999999999999999998887765    89999999988776655543333332221111


Q ss_pred             CCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHH-HHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          200 DDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI-CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      .+++.++.         .+++....+.......+...+.. ..++++|.++...+..++..++.....+++|.|
T Consensus       203 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  267 (455)
T TIGR00892       203 SKSKSKEG---------LPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPY  267 (455)
T ss_pred             cccccccc---------CCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHH
Confidence            00000000         00000000000000000111110 125678999988888888877777777666655

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.80  E-value=3.7e-18  Score=164.14  Aligned_cols=236  Identities=16%  Similarity=0.145  Sum_probs=154.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~   85 (273)
                      +.+.+..+++..++..++.......+..++....     +...+....+++.+++.++..++++++|+++||+|||++++
T Consensus         7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~   81 (1146)
T PRK08633          7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY-----DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR   81 (1146)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH
Confidence            3455666666666655555444333433333321     11234456789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILA---YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (273)
Q Consensus        86 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~  162 (273)
                      .+.++.++..++..   ...+   ++.+++.|++.|+ +.+...++..++++|++|+++|++++|+...+.++|.++||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~  157 (1146)
T PRK08633         82 IVKLFEVGLTLLIVLAYYLGW---FWLAFAVTFLLGA-QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA  157 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence            88776555544433   3345   8899999999998 677777899999999999999999999999999999999999


Q ss_pred             HHHHhh-h------------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccc
Q 024030          163 AARFLS-T------------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (273)
Q Consensus       163 ~~~~l~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (273)
                      +++.+. +            ++.+.+..+...+..++..+.+|+.+......+                  +    +...
T Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~----~~~~  215 (1146)
T PRK08633        158 LFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF------------------D----KKKY  215 (1146)
T ss_pred             HHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc------------------c----cccc
Confidence            988772 1            222323222222222333444565433222100                  0    0000


Q ss_pred             cccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          230 KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       230 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      .......+.++.++++|.++...+..++..........++|.|
T Consensus       216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (1146)
T PRK08633        216 LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAY  258 (1146)
T ss_pred             ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            1111334445567888988887777777666665556666554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.80  E-value=4e-18  Score=163.77  Aligned_cols=236  Identities=12%  Similarity=0.070  Sum_probs=156.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      .+.+..++...++..++.++....++.+......  .+.........++..+++.+...++++++|+++||+|||+++..
T Consensus        10 ~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~   87 (1140)
T PRK06814         10 SRRFAPLFWTQFFGAFNDNFLKNALVILILYGLS--GALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKI   87 (1140)
T ss_pred             ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHH
Confidence            3445555666666666655443333322211110  11112233457888889999999999999999999999997643


Q ss_pred             HH---HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PL---TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        87 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      ..   +...+........++   ++.+++.|+++|+ +.+...++..+++.+++|+++|++++|+.+++.++|.++||.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi-~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l  163 (1140)
T PRK06814         88 LKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGI-HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTII  163 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHH
Confidence            22   222222222223355   8999999999998 6677779999999999999999999999999999999999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHH
Q 024030          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (273)
Q Consensus       164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (273)
                      ++++    +|++.|....+..++ .++..+.+|+++..++..                        +.......+..+.+
T Consensus       164 ~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~  218 (1140)
T PRK06814        164 GGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNAAPDL------------------------KIDRNIIRSTITLL  218 (1140)
T ss_pred             HHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCC------------------------eeccchHHHHHHHH
Confidence            9987    777777433333333 333355566543322210                        00001111333456


Q ss_pred             HHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      +.++++|.++...+..++.++....+.+++|.|+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  252 (1140)
T PRK06814        219 KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA  252 (1140)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            6688999999999988888888777777888763

>TIGR00898 2A0119 cation transport protein

Probab=99.80  E-value=2.9e-19  Score=157.60  Aligned_cols=148  Identities=22%  Similarity=0.283  Sum_probs=129.6

Q ss_pred             cchhHH---HHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhh
Q 024030           44 DECSLA---IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMV  120 (273)
Q Consensus        44 ~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  120 (273)
                      .+++.+   ..+.|+..+++.++.++++++.|+++||+|||++++++.++..++.++..++++   ++.+++.|++.|+ 
T Consensus       117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~-  192 (505)
T TIGR00898       117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLVGM-  192 (505)
T ss_pred             EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHh-
Confidence            445666   778899999999999999999999999999999999999999998888888888   8999999999998 


Q ss_pred             chhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      +.+...+...+++.|++|+++|+++.++...+..+|.+++|.++..+ +||+.+++.++..++..+. .+++||+++
T Consensus       193 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~  268 (505)
T TIGR00898       193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLL-SWFVPESPR  268 (505)
T ss_pred             hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHhcCCChH
Confidence            55665689999999999999999999999999999999999988776 7999999888777666555 467888754

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.80  E-value=1.5e-17  Score=142.68  Aligned_cols=210  Identities=13%  Similarity=0.119  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-----CCch-hhHHH
Q 024030           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKA-MLTLP   87 (273)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~~~~~   87 (273)
                      +...+.+.+........+|.|+++.        +.+..+.|++......  .+..+++|+++||+     |||| .+..+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~--------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~   74 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVE--------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLT   74 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHH
Confidence            3445566777788889999999774        6777888888666554  68999999999999     8876 57777


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .+..+++...+.+.+....++.+++..++.++ ..+...+...+++.|++|+++|+++.++...+.++|..+++.+++.+
T Consensus        75 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902         75 QVGLAASIAAMAFCPPHAALWPLAGLAVLVAF-LSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            77777777776766443336767777777775 56667789999999999999999999999999999999988766553


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHH
Q 024030          168 -----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (273)
Q Consensus       168 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  242 (273)
                           +||..|++.+++.++..+. .+..||++++++++                        ++.   .++.++.++.+
T Consensus       154 ~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~------------------------~~~---~~~~~~~~~~l  205 (402)
T PRK11902        154 ADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPP------------------------RSL---GEAVVGPLRDF  205 (402)
T ss_pred             HhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCccccccc------------------------chh---HHHHHHHHHHH
Confidence                 7999999888776655443 44566643321110                        000   00223344557


Q ss_pred             hhcchhHHHHHHHHHhcccc
Q 024030          243 RSSVTLSQAAVVAFFSGLSE  262 (273)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~  262 (273)
                      +|||.++..++..+++....
T Consensus       206 ~~~~~~~~~l~~~~l~~~~~  225 (402)
T PRK11902        206 FSRRGAWALLLLIVLYKLGD  225 (402)
T ss_pred             HhCcCHHHHHHHHHHHHhHH
Confidence            88999888777766665543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.80  E-value=6e-18  Score=142.73  Aligned_cols=211  Identities=13%  Similarity=0.071  Sum_probs=146.5

Q ss_pred             HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-----CCchhh-HHHHHHHHHHHHHH
Q 024030           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAML-TLPLTLSIIPLAIL   98 (273)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~~   98 (273)
                      ....+.+|.+.+|.        +.+..+.|+..+. .+...+ .+++|+++||+     ||||.+ +.+.+...+.....
T Consensus         5 ~~~~~~~~~~~~~~--------g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901         5 GLVGNTLPYWLRSK--------NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             hhHHhHHHHHHHHc--------CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            44567788887664        6666777877554 444444 89999999998     899875 56666666666666


Q ss_pred             HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h------
Q 024030           99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S------  168 (273)
Q Consensus        99 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~------  168 (273)
                      .+.++....+.+....++.++ ..+...++..++++|++|+|+|+++.++...+.++|..+++.+++.+    +      
T Consensus        75 ~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~  153 (356)
T TIGR00901        75 SFLVPSTDLPLLAGLAFLIAF-FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLI  153 (356)
T ss_pred             HcCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            666443346667777777776 55666789999999999999999999999999999999999888765    6      


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcc
Q 024030          169 --TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (273)
Q Consensus       169 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  246 (273)
                        ||.+|.+.++..++..+...+..||+.++++.                       . ++   ..++.++.++.++++|
T Consensus       154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-----------------------~-~~---~~~~~~~~~~~~~~~~  206 (356)
T TIGR00901       154 TLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-----------------------P-KP---LTQAVLKPIREFFQRK  206 (356)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-----------------------c-hh---HHHHHHHHHHHHHHhc
Confidence              99999888877666555534445553221110                       0 00   0012233444566666


Q ss_pred             h---hHHHHHHHHHhccccccceeeeeccC
Q 024030          247 T---LSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       247 ~---~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      .   ++...+..+++..++...++++|.|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (356)
T TIGR00901       207 NMIQALLLLLLIVLYKLGDSAATVLTTLFL  236 (356)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   77777777777888877777777663

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.80  E-value=2.9e-18  Score=146.75  Aligned_cols=176  Identities=13%  Similarity=0.074  Sum_probs=125.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      |.++......++...+.....|++|.|+++.       .+.+..+.|++.+...++..+++++.|+++||+|||+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~   74 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDV-------NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI   74 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            4566667777788888889999999998663       356677889999999999999999999999999999999877


Q ss_pred             HHHHHHHHHHH---HhccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030           88 LTLSIIPLAIL---AYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (273)
Q Consensus        88 ~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~  162 (273)
                      .....+.....   ...+.  ....+..++.+++.|+ +.+...+...++..|..+  ++++..|......++|..+||.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~  151 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGF-VFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCAS  151 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHH
Confidence            66555433322   11111  0112334556777776 444445666677666533  3345667778888999999999


Q ss_pred             HHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030          163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       163 ~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      +++.+   +|+.+|++.+++.++..++.....||
T Consensus       152 ~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       152 IAGILFSIDPQIVFWLGSGFALILMLLLMFAKPK  185 (396)
T ss_pred             HHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            98876   88999988877777665553433343

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.79  E-value=5.7e-19  Score=154.04  Aligned_cols=172  Identities=16%  Similarity=0.107  Sum_probs=133.1

Q ss_pred             HHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc
Q 024030           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR  101 (273)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  101 (273)
                      .......+.+|....+.--..+.+.+.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++..++..+....
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  121 (481)
T TIGR00879        42 YDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA  121 (481)
T ss_pred             cccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            33444555666555442111122234557788999999999999999999999999999999999999888888877655


Q ss_pred             cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH---HH----hhhHHHHH
Q 024030          102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA---RF----LSTTSAFQ  174 (273)
Q Consensus       102 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~---~~----l~~~~~~~  174 (273)
                      .+...++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+.+..+|..++|.++   ..    .+||+.|.
T Consensus       122 ~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~  200 (481)
T TIGR00879       122 AFALSVEMLIVGRVLLGI-GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG  200 (481)
T ss_pred             ccccchHHHHHHHHHHHh-hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence            543336789999999998 66666688999999999999999999999999999999999988   43    38999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCC
Q 024030          175 AATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      +.++..++..+ ..+++||++
T Consensus       201 ~~~~~~~~~~~-~~~~l~~~~  220 (481)
T TIGR00879       201 LQLIPAGLLFL-GLFFLPESP  220 (481)
T ss_pred             HHHHHHHHHHH-HHhcCCCCh
Confidence            86555444433 356677764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.79  E-value=3.5e-17  Score=143.53  Aligned_cols=177  Identities=15%  Similarity=0.193  Sum_probs=131.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-----CCc
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRK   81 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----grr   81 (273)
                      +|+...++...+..........+.+|.++++.        +.+..+.|.. +...... ++.+++|+++||+     |||
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~--------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grr   80 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTVE--------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRR   80 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCc
Confidence            34555666677778888888999999998764        3444455554 2222232 6889999999999     999


Q ss_pred             hh-hHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030           82 AM-LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (273)
Q Consensus        82 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (273)
                      +. +..+.+..+++...+++.++..+++.+.+.+++.++ +.+...+...++..|++|+++|+++.++...+..+|..++
T Consensus        81 r~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~-~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg  159 (491)
T PRK11010         81 RGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF-CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS  159 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence            86 556667776776666665443347788888999997 5566668899999999999999999999999999999998


Q ss_pred             HHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          161 TLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       161 p~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      +.++..+     +||..|++.++..++..+. .+..||++
T Consensus       160 ~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~-~~~~~e~~  198 (491)
T PRK11010        160 GGLALWLADRYLGWQGMYWLMAALLIPCIIA-TLLAPEPT  198 (491)
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence            8666543     7999999988776665444 33466643

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.79  E-value=8.2e-18  Score=147.07  Aligned_cols=169  Identities=10%  Similarity=0.073  Sum_probs=138.2

Q ss_pred             CCchhhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hC
Q 024030            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YG   79 (273)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g   79 (273)
                      |++++++|.++.++...+...++++...++++.|+++..       +.+....+++.+.+.....+..+++|+++|| +|
T Consensus         7 ~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l-------g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G   79 (489)
T PRK10207          7 MGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQL-------GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG   79 (489)
T ss_pred             cchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc
Confidence            444556677888888888889999999999999997643       4455566777888888888888999999999 99


Q ss_pred             CchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHHH
Q 024030           80 RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASF  157 (273)
Q Consensus        80 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~  157 (273)
                      |||++..+.+++.++.+.+.+..+.  ...+++.|.++|+ +.|...+...+++.|.+|++  +|+++.++.+...++|.
T Consensus        80 ~r~~~~~g~~~~~~g~~~~~~~~~~--~~ll~~~~~l~~i-g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~  156 (489)
T PRK10207         80 TKRTIVLGAIVLAIGYFMTGMSLLK--PDLIFIALGTIAV-GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGS  156 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHH
Confidence            9999999999999999888876541  2235578999998 66767688899999999877  45778999999999999


Q ss_pred             HHHHHHHHHh----hhHHHHHHHHHH
Q 024030          158 VCGTLAARFL----STTSAFQAATIV  179 (273)
Q Consensus       158 ~~gp~~~~~l----~~~~~~~~~~~~  179 (273)
                      .+||.+++++    +||+.|++.++.
T Consensus       157 ~~g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        157 LISLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             HHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            9998888876    899999886543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.79  E-value=1.4e-17  Score=141.86  Aligned_cols=220  Identities=13%  Similarity=0.013  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH-H
Q 024030           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-T   89 (273)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~-~   89 (273)
                      ..+....+....+.....|++|.|+++.        +.+..+.|++.+.+.+...++++++|.++||+|||+...... .
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~--------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~   78 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGI--------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLAL   78 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3455667777777888999999998764        677789999999999999999999999999999854332111 1


Q ss_pred             HHHHHHH-HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024030           90 LSIIPLA-ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (273)
Q Consensus        90 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-  167 (273)
                      ...+... .....++   ++.+++.|.+.+.+. +...+...++..+.  +++|+++.|......++|..++|.+++.+ 
T Consensus        79 ~~~l~~~~~~~~~~~---~~~l~~~~~l~~~~~-~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~  152 (382)
T TIGR00902        79 ASAIFAAAFSAGAHN---AWLLFIAIGLFALFF-SAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI  152 (382)
T ss_pred             HHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH-ccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            1111112 2234455   888889999888744 44457788887664  57889999999999999999999988877 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhh
Q 024030          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (273)
Q Consensus       168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  244 (273)
                         +|+..|.+.....++. ++ .+..+|+.++++++                   ++   ++ .+..++    .+.+.|
T Consensus       153 ~~~g~~~~f~~~~~~~~~~-~~-~~~~~~~~~~~~~~-------------------~~---~~-~~~~~~----~~~~l~  203 (382)
T TIGR00902       153 GMFDEQNILAILTAGLAFM-LI-GFLIKPTIPPKDAI-------------------PE---DE-SQGDSA----FIALLK  203 (382)
T ss_pred             HHcChhHHHHHHHHHHHHH-HH-HHHcCCCCCCCccc-------------------cc---cc-cccchh----HHHHHc
Confidence               8888887765442222 22 23334332111110                   00   00 000011    223678


Q ss_pred             cchhHHHHHHHHHhccccccceeeeeccC
Q 024030          245 SVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      ||+++...+..++...+....+++.|.|+
T Consensus       204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l  232 (382)
T TIGR00902       204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYW  232 (382)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999998888888888877763

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.78  E-value=9.8e-18  Score=142.82  Aligned_cols=212  Identities=14%  Similarity=0.033  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc----hhhHHHHHHH
Q 024030           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK----AMLTLPLTLS   91 (273)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr----~~~~~~~~~~   91 (273)
                      ..+....+.+...|++|.|++|.        +.+..+.|++.+++.+...++++++|+++||+|||    +.+.++... 
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l~~~--------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~-   82 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWLKGQ--------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL-   82 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhc--------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH-
Confidence            34555577788999999998764        66778899999999999999999999999999994    222222211 


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 024030           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----  167 (273)
                       .........++   +|.+++.|++.|+ +.+...+...++..++  +++|+++.+......++|..+||.+++.+    
T Consensus        83 -~~~~~~~~~~~---~~~l~i~~~l~g~-~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~  155 (382)
T PRK11128         83 -FAVAFWFGAHS---FWLLFVAIGLFNL-FFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF  155 (382)
T ss_pred             -HHHHHHHhccc---HHHHHHHHHHHHH-HHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence             11122223355   8888899999997 4555557777777776  45688888889888899999999999876    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcch
Q 024030          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (273)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  247 (273)
                      +||..|++.++..++..+. .+..||++++++++                        ++..+..++    .+.++|+|.
T Consensus       156 g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------------------~~~~~~~~~----~~~i~~~~~  206 (382)
T PRK11128        156 GEQAILWILTAGVASMLLG-QLLRPTIMPQGESR------------------------QQESAGWPA----WKALLKEPT  206 (382)
T ss_pred             ChhHHHHHHHHHHHHHHHH-HHccCCCCCccccc------------------------cccccccch----HHHHHcChh
Confidence            8898888776544433332 33334322111100                        000000112    234778899


Q ss_pred             hHHHHHHHHHhccccccceeeeecc
Q 024030          248 LSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      ++...+..++.+..+...++++|.|
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~  231 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIY  231 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            9988888888777776666666655

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.78  E-value=6e-17  Score=142.58  Aligned_cols=160  Identities=16%  Similarity=0.233  Sum_probs=136.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++.+..+++..++..+......+.+|.+.++.        +.+..+.+++.+.+.++..++.++.|+++||+|||+.+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF--------GLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            34555667777777788888888888876543        6667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +.+...++..++.+.++   ++.+++.|++.|+ +.+...+...+++.|.+|+++|++++++.....++|..++|.+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  166 (496)
T PRK03893         91 SIVLFSVGTLACGFAPG---YWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL  166 (496)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888888888877   8899999999998 5555668889999999999999999999999999999999988877


Q ss_pred             h----hhHHHHHHHHH
Q 024030          167 L----STTSAFQAATI  178 (273)
Q Consensus       167 l----~~~~~~~~~~~  178 (273)
                      +    +|++.|.+..+
T Consensus       167 l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        167 VVPVWGWRALFFIGIL  182 (496)
T ss_pred             HhccCCHHHHHHHHHH
Confidence            6    78988876433

>TIGR00896 CynX cyanate transporter

Probab=99.78  E-value=3.8e-18  Score=143.92  Aligned_cols=203  Identities=14%  Similarity=0.062  Sum_probs=142.9

Q ss_pred             HHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhcc
Q 024030           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR  102 (273)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  102 (273)
                      +.....|.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.+...++.... ..+
T Consensus        15 ~~~~~~~~lp~l~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~   85 (355)
T TIGR00896        15 ALTSVGPLLPQIRSAL--------GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP   85 (355)
T ss_pred             ccccCcccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence            3345678888886553        6677889999999999999999999999999999999999888877776665 555


Q ss_pred             CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHH
Q 024030          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL------STTSAFQAA  176 (273)
Q Consensus       103 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l------~~~~~~~~~  176 (273)
                      +   .+.+++.|++.|+ +.+...+.....+.|.+| ++|++++++.+...++|..++|.+++.+      +||..|...
T Consensus        86 ~---~~~l~~~~~~~g~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~  160 (355)
T TIGR00896        86 G---TALLFAGTALIGV-GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW  160 (355)
T ss_pred             c---HHHHHHHHHHHHH-HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            5   7788899999998 555555677778888886 6899999999999999999888877655      277777766


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHH
Q 024030          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF  256 (273)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  256 (273)
                      ++..++..   ....|+.+++++++                  +     +...+   ..+    ..+|+|.++...+..+
T Consensus       161 ~~~~~~~~---~~~~~~~~~~~~~~------------------~-----~~~~~---~~~----~~~~~~~~~~~~~~~~  207 (355)
T TIGR00896       161 ALPALLAL---LAWIPQVRRRVAAN------------------Q-----TTTRL---TPV----RIWRSPLAWQVTVFFG  207 (355)
T ss_pred             HHHHHHHH---HHHhhhhccccCCC------------------C-----CCCCC---CCc----hhhcCHhHHHHHHHHH
Confidence            55433322   22344432211110                  0     00000   111    1456677777766666


Q ss_pred             Hhccccccceeeeecc
Q 024030          257 FSGLSEGGMQASFLVY  272 (273)
Q Consensus       257 ~~~~~~~~~~~~~~~y  272 (273)
                      +....+.+..+++|.|
T Consensus       208 ~~~~~~~~~~~~lp~~  223 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAI  223 (355)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666666665

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=3.8e-18  Score=147.35  Aligned_cols=217  Identities=18%  Similarity=0.093  Sum_probs=164.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (273)
Q Consensus        44 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  123 (273)
                      ++.+....+.+.+.+++.++++++.+++|.+.||++..+.+....+...+..++.....+   ++.+++.|++.|+ ..+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl-~es  149 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGL-FES  149 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHH-Hhc
Confidence            444566677899999999999999999999999999777777777666666655555666   8999999999998 777


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----------STTSAFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      ..+|....+++.++.+++|+..+|++++..++|.++|.+++..+          |||+.|.+.+++.++..++..+++|+
T Consensus       150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            77799999999999999999999999999999999998887662          89999999999998888887888988


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          194 DVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      .+.+..-.++.      +++......++++......+  .+..+ +...+++|++|...+..++.....+++.+|+|+|+
T Consensus       230 ~P~~~~fl~~~------ek~~~~~~~~~~~~~~~~~~--~~~~~-~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l  300 (495)
T KOG2533|consen  230 NPSKAWFLTDE------EKELVVERLRESPSGGIENK--FKWKG-FKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYL  300 (495)
T ss_pred             ChhhccccchH------HHHHHHHHHHhccCCCcccc--cCHHH-HHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            76643211000      00000000000001111110  12222 23367899999999999999999999999999875

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.77  E-value=5.4e-17  Score=138.77  Aligned_cols=178  Identities=16%  Similarity=0.219  Sum_probs=128.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH-
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-   85 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-   85 (273)
                      +......++..++..++.....|.+|.++.+.       ++.+..+.|++.+...+...+.+++.|.++||+||||.++ 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~   86 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDE-------VHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIV   86 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            44566677788889999999999999998553       3566677898877666655555555555599999998754 


Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH--HHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      .+.+...++..++.+.++   ++.+++.+.+.+. ..+...+...++..|..++++|  +...++.+...++|..+||.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i  162 (393)
T PRK15011         87 FCCLLGVLACTLFAWNRN---YFVLLFVGVFLSS-FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPL  162 (393)
T ss_pred             HHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHH
Confidence            555555566666667666   6766555555443 2335557888888888776655  344578888899999999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      ++.+    +||..|+..++..++..++.++..||.+
T Consensus       163 ~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        163 AYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            8876    8999999888777766666566677754

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.77  E-value=1.9e-16  Score=134.06  Aligned_cols=146  Identities=10%  Similarity=0.055  Sum_probs=122.9

Q ss_pred             chhHHHHH-HHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030           45 ECSLAIYL-SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (273)
Q Consensus        45 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  123 (273)
                      +.+++..+ .|.+.+++..++.++.++.|.++||+|.|+++..+.+...+...+..+.++   ++.+.+.|++.|+ +.+
T Consensus        55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGv-aEA  130 (511)
T TIGR00806        55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSV-TMA  130 (511)
T ss_pred             HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHH
Confidence            34667777 899999999999999999999999999999999999999999999999888   8999999999998 777


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHH---HHHHHHHHHHHHHHHHhcCCCC
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---STTSAFQ---AATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      ... +...++.+++|+++|++++|+...+..+|.++++++++++   +|++-..   +......+++++ .+++|..++
T Consensus       131 ~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~-a~~LP~~~~  207 (511)
T TIGR00806       131 ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFL-ALFLKRPKR  207 (511)
T ss_pred             HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH-HHhCCCCch
Confidence            776 9999999999999999999999999999999999888876   7765433   333333333333 667775443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.77  E-value=2.7e-17  Score=140.05  Aligned_cols=172  Identities=16%  Similarity=0.063  Sum_probs=119.1

Q ss_pred             HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (273)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~   99 (273)
                      +.+..+.+.+..+.+.++...+ .++................++..+++++.|+++||+|||+++..+.++..++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         5 EWFDFYLYGFAAVLVFHTFFPP-SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            3445555555555554443221 112122222323334445566678999999999999999999999999999988888


Q ss_pred             hccCchh-----HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 024030          100 YRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--------  166 (273)
Q Consensus       100 ~~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~--------  166 (273)
                      +.++...     .+.+++.|+++|+ +.+...+...+++.|+.|+++|++..++...+..+|..+++.++..        
T Consensus        84 ~~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        84 LLPSYATIGIWAPILLLLARLIQGF-SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHh-hccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            8776211     1257888999998 5555658889999999999999999999999999999998876543        


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       167 ----l~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                          .+||++|.+.++..++.... ....||+
T Consensus       163 ~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~  193 (394)
T TIGR00883       163 ALLEWGWRIPFLVSAVLVLIGLYL-RRNLEET  193 (394)
T ss_pred             HhhccchHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence                26888888766655444332 3344554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.77  E-value=1.1e-17  Score=144.19  Aligned_cols=178  Identities=12%  Similarity=0.022  Sum_probs=118.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~   85 (273)
                      +++.++......++...+.+...|++|.|+++.       ++.+..+.|++.+...++..+++++.|+++||+|||+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~   80 (420)
T PRK09528          8 KNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDI-------NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLL   80 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            356777777778888888888999999998763       3677788999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHh---ccCc--hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAY---RRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (273)
                      ++..+..+....+..   .+..  .......+..+..|. ......+....+..+.  .++++...|......++|..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~  157 (420)
T PRK09528         81 WIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGF-GFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALC  157 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHH
Confidence            766555443322111   1100  001112222333332 1111112233333222  2456677888888899999999


Q ss_pred             HHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030          161 TLAARFL---STTSAFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       161 p~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      |.+++.+   +|+.+|++.++..++..++.++..+|
T Consensus       158 ~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        158 AFIAGILFNINPQINFWLGSGSALILLVLLFFAKPD  193 (420)
T ss_pred             HHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccccc
Confidence            9999877   78888988777766655553333333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.76  E-value=5.9e-17  Score=135.71  Aligned_cols=163  Identities=25%  Similarity=0.343  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHH
Q 024030           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (273)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~   91 (273)
                      ......+....+.....+..|.+.++.        +.+..+.+++.+...++..++.++.|+++||+|||+.+..+....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~   74 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDL--------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF   74 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence            345566677778888888999987654        455677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 024030           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----  167 (273)
                      .++.......++   .+.+++.|++.|+ +.+...+...+++.|.+|+|+|++++++.+...++|..++|.+++.+    
T Consensus        75 ~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  150 (352)
T cd06174          75 ALGSLLLAFASS---LWLLLVGRFLLGL-GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL  150 (352)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHc-ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999888888777   8899999999998 66666789999999999999999999999999999999999998877    


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 024030          168 STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~  186 (273)
                      +|+..+.+.++..++..+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         151 GWRWLFLILAILGLLLALL  169 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            6888888887776665555

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.76  E-value=6.9e-18  Score=144.21  Aligned_cols=150  Identities=18%  Similarity=0.198  Sum_probs=122.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (273)
Q Consensus        44 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  123 (273)
                      ++...+. ..+.+.+++.++.++++.+.|.++||+|||..+.++.+...++..++.++...+.+..+++.|++.|+ ..|
T Consensus        54 s~~~~~~-lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl-~~g  131 (485)
T KOG0569|consen   54 SDSTLDL-LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGL-ACG  131 (485)
T ss_pred             ChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HhH
Confidence            3333443 45888999999999999999999999999999999988888887777765555558999999999998 778


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA------RFLSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      ........++.|..|++.||....+...+..+|..+|..++      ..-.|++.+....+..++.+++ ..++||+++
T Consensus       132 l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk  209 (485)
T KOG0569|consen  132 LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPK  209 (485)
T ss_pred             HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcc
Confidence            88889999999999999999999999999999988885443      2225777777766666655555 778999987

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.76  E-value=1.7e-16  Score=136.93  Aligned_cols=238  Identities=14%  Similarity=0.112  Sum_probs=158.3

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh----hhCCchhhH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT   85 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~   85 (273)
                      +..+....+-..++.....++++.|+++.        +.+....+++..+..+..++.+|+.|.++|    |+||||+++
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~l--------g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~i   77 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQEL--------GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFI   77 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHH
Confidence            33344444455677778888888887653        556688899999999999999999999999    599999988


Q ss_pred             HH-HHHHHHHHHHHHhccCch------------h--HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH--HHHHHH
Q 024030           86 LP-LTLSIIPLAILAYRRSIS------------F--FYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFGI  148 (273)
Q Consensus        86 ~~-~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~  148 (273)
                      .+ ....+++..++.+.++..            .  .+..++...+..+ ......+...++++|.+|+++|  +.+.++
T Consensus        78 l~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~-~~n~~~~p~rALiaDl~p~~~~~~~~a~~~  156 (477)
T TIGR01301        78 AAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDV-ANNMLQGPCRAFLADLTGGDARRTRIANAY  156 (477)
T ss_pred             HHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence            65 555556656665544310            0  0122233333333 4455667889999999998865  579999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 024030          149 LLGVLSASFVCGTLAARFL-------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIIT  209 (273)
Q Consensus       149 ~~~~~~~g~~~gp~~~~~l-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (273)
                      .+...++|..+|+.+++..                   +.+..|++.+++.++..++..+..||.+..++++.+.     
T Consensus       157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~-----  231 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN-----  231 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh-----
Confidence            9999999999999988764                   2366788877777777777777888865422211000     


Q ss_pred             CCCcccccCCCCCCCccccccccchHHHHHHHHhh-cchhHHHHHHHHHhccccccceeeeecc
Q 024030          210 EETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS-SVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                            +  +.++..+.   +..+.+++.++.+++ .|.+++++++.++.++++..+..+...|
T Consensus       232 ------~--~~~~~~~~---~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~  284 (477)
T TIGR01301       232 ------S--EAAPPSKH---GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDW  284 (477)
T ss_pred             ------h--hccccccc---chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence                  0  00000000   111234455555443 5778899999999999888776665544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.74  E-value=4.1e-16  Score=127.97  Aligned_cols=223  Identities=18%  Similarity=0.124  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (273)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~   90 (273)
                      .......++..+......+.+|.+.+        .++++..+++++..++..++++++++.|++.+|+|+|+-++.|+.+
T Consensus        16 v~~t~lFfl~G~~~~l~diLip~l~~--------~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l   87 (422)
T COG0738          16 VLLTSLFFLWGFITCLNDILIPHLKE--------VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLL   87 (422)
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHH--------HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHH
Confidence            33344444555555666678888743        4478888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 024030           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (273)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---  167 (273)
                      ++++..++.-+.+...+..+++..++.|. +.+...+..+++++...++++.++.+++.+..+++|..+||++++.+   
T Consensus        88 ~avg~~lF~pAa~~~~y~~FL~~lFila~-Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738          88 YAVGAALFWPAASSKSYGFFLVALFILAS-GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHHHh-hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            99999888744444448888888999997 77888899999999999999999999999999999999999998875   


Q ss_pred             --------------------hhHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCc
Q 024030          168 --------------------STTSAFQAATIVSMLAAAYMRVFL--KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK  225 (273)
Q Consensus       168 --------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (273)
                                          .++.+|...+...++..+. ....  |+.+..+++                         
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~-~~~~k~p~~~~~~~~-------------------------  220 (422)
T COG0738         167 GVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVL-ILLSKLPDLQVAAPS-------------------------  220 (422)
T ss_pred             hhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHhccCCcCCccccc-------------------------
Confidence                                1355566555444433333 2212  221111111                         


Q ss_pred             cccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          226 IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       226 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                        ..+..+.   ....++|+|+++...+..|+|.-++....++++.|+
T Consensus       221 --~~~~~~~---~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~  263 (422)
T COG0738         221 --LGASGSA---GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYL  263 (422)
T ss_pred             --ccccccc---hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence              0011001   223378899999999999999999888888887763

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.71  E-value=4.6e-15  Score=134.39  Aligned_cols=139  Identities=23%  Similarity=0.134  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHH
Q 024030           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY  132 (273)
Q Consensus        53 ~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  132 (273)
                      ......+..++.+++.++.|+++||+|||++++++.++.+++.+++.+.++   .+.+++.+++.|+ ..+...+...++
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s---~~~ll~~~~l~g~-~~~~~~~~~~a~  672 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS---ESAMIALLCLFGG-LSIAAWNALDVL  672 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            344556777899999999999999999999999999999988888887776   5566677777776 444455789999


Q ss_pred             HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          133 VADNISERQRASAFGILLGVLSASFVCGTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      ++|++|++.|++++|+.+....+|.++||.+++.+   +...+|.+.+++.+++.++ ..++||++.
T Consensus       673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll-~~~LPET~~  738 (742)
T TIGR01299       673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLL-ALKLPDTRG  738 (742)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCCCCcc
Confidence            99999999999999999999999999999998866   3356777777766665555 445687654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.71  E-value=8e-16  Score=133.30  Aligned_cols=220  Identities=14%  Similarity=0.053  Sum_probs=147.7

Q ss_pred             HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchh-hHHHHHHHH
Q 024030           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM-LTLPLTLSI   92 (273)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~-~~~~~~~~~   92 (273)
                      +.......+..++++.|+.+.       .+.+....|++.++..+...+..|+.|.++||    +||||. ++.+....+
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~-------~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~   81 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDV-------LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFS   81 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHH
Confidence            334455566777888887653       36778889999999999999999999999998    677665 556767777


Q ss_pred             HHHHHHHhccCch---hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHH---
Q 024030           93 IPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR---  165 (273)
Q Consensus        93 ~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~~---  165 (273)
                      ++..++...++..   ..+.+++.+++.+. +.+.......++..|.. ++++|++..++.+....+|..+++.+.+   
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~  160 (437)
T TIGR00792        82 IVLVLLFTTPDFSATGKLVYAYITYILLGL-FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV  160 (437)
T ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766666554321   23455666677776 44555566778888887 5789999999988887777655543322   


Q ss_pred             --------HhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHH
Q 024030          166 --------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (273)
Q Consensus       166 --------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (273)
                              ..+|+..+.+.+++.++..++..+..||++++.+++                        +   +...+.++
T Consensus       161 ~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~------------------------~---~~~~~~~~  213 (437)
T TIGR00792       161 SYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN------------------------I---EKKLSLKQ  213 (437)
T ss_pred             HHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc------------------------c---ccCCCHHH
Confidence                    126888888887777666655455566543211110                        0   00113455


Q ss_pred             HHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       238 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      .++.+++||.++..++..++...+......+.++|
T Consensus       214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (437)
T TIGR00792       214 IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY  248 (437)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee
Confidence            56668889999998888888777766655444433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.70  E-value=6.5e-15  Score=126.86  Aligned_cols=186  Identities=12%  Similarity=0.069  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (273)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~   90 (273)
                      +...+..++..........+.|.+.++.........+.+....|...++..+...++.++.|+++||+|+|+++..+.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~  290 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVA  290 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            33444444444444455567777776531011111124456778999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhccCch-hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHh-
Q 024030           91 SIIPLAILAYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARFL-  167 (273)
Q Consensus        91 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~gp~~~~~l-  167 (273)
                      ..++..++....... ..+.+++..++.|+ +.+...+....++.|.+|+++|++++|+.+ ...++|..+||.++|.+ 
T Consensus       291 ~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~-~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~  369 (418)
T TIGR00889       291 WALRFGFFAYGDPEYFGYALLFLSMIVYGC-AFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV  369 (418)
T ss_pred             HHHHHHHHHHcCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            888766665532211 13556677888887 556666788889999999999999999997 67889999999999876 


Q ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030          168 ---------STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (273)
Q Consensus       168 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                               +|+..|.+.++..++..++..+++||+.+.
T Consensus       370 ~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       370 EKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence                     267888888888777777777888876443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.69  E-value=2.8e-15  Score=129.96  Aligned_cols=171  Identities=11%  Similarity=0.010  Sum_probs=130.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhh
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML   84 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~   84 (273)
                      +++.++..+...+...++++....++|.|+++.       ++.+....+.+.+.+.....++.+++|+++||+ ||||++
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i   79 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV   79 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence            355677777778888888999999999998763       355667778888889999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHHHHHHHH
Q 024030           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGTL  162 (273)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~gp~  162 (273)
                      .++.++..++..++......  ...+.+...+..+ +.|...+...++++|.+|++  +|.+++++.+...++|..++|.
T Consensus        80 liG~il~~lg~lll~~~~~~--~~~~~l~l~li~i-G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~  156 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIH--PSFLYLSLAIIVC-GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI  156 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH-hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence            99999988887666543221  1223333233333 33444466788999999875  7999999999999999999999


Q ss_pred             HHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030          163 AARFL----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       163 ~~~~l----~~~~~~~~~~~~~~~~~~~  186 (273)
                      +.+++    +|++.|.+.++..++..+.
T Consensus       157 l~g~L~~~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        157 ACGYAQEEYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence            99887    7999998876544444333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.68  E-value=2.9e-15  Score=131.68  Aligned_cols=168  Identities=14%  Similarity=0.103  Sum_probs=130.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchhhH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~   85 (273)
                      ++.++..+...+...++++...++++.|+++..       +.+....+.+.+.+........+++|+++|| +|||+++.
T Consensus        20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l-------g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~   92 (500)
T PRK09584         20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQL-------GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM   92 (500)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            345777788888888999999999999996643       4444555666666555555666789999999 59999999


Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      .+.++..++..++.++++.  .+.+.+.+++.|+ +.|...+...+++.|++|++  +|+.+.++.+.+.++|..+||.+
T Consensus        93 ~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gi-g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i  169 (500)
T PRK09584         93 LGAIVLAIGYALVAWSGHD--AGIVYMGMATIAV-GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHH-hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence            9999999888887775431  4556678888888 56666678889999999864  35568888899999999999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHH
Q 024030          164 ARFL----STTSAFQAATIVSMLAA  184 (273)
Q Consensus       164 ~~~l----~~~~~~~~~~~~~~~~~  184 (273)
                      ++++    +|++.|.+.++...+..
T Consensus       170 ~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        170 TPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            9887    89999998776544433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.68  E-value=6.6e-15  Score=129.45  Aligned_cols=171  Identities=15%  Similarity=0.119  Sum_probs=114.2

Q ss_pred             HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (273)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~   97 (273)
                      +.....++....++|.|+++..       +.+....++......++..++.++.|+++||+|||+.+..+.+...+....
T Consensus       260 ~~~~~~~~~~~~~~p~~l~~~~-------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  332 (490)
T PRK10642        260 IATNVTYYMLLTYMPSYLSHNL-------HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIP  332 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3344566677789999986533       223334456667778888999999999999999999888776544332222


Q ss_pred             -HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHH
Q 024030           98 -LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTS  171 (273)
Q Consensus        98 -~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~  171 (273)
                       +..... +....+++.+++.|+ ..+...+....+++|.+|++.|+++.|+.+....+++.++|.+.+.+     +|+.
T Consensus       333 ~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~  410 (490)
T PRK10642        333 AFILINS-NVIGLIFAGLLMLAV-ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMM  410 (490)
T ss_pred             HHHHHhC-CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence             222111 115566677887776 43444466778889999999999999986555566677888887765     3565


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024030          172 AFQAATIVSMLAAAYMRVFLKDDVPND  198 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (273)
                      ++++..+..++..+. .+++||+++..
T Consensus       411 ~~~~~~~~~~i~~~~-~~~~pes~~~~  436 (490)
T PRK10642        411 PAYYLMVVAVIGLIT-GVTMKETANRP  436 (490)
T ss_pred             HHHHHHHHHHHHHHH-HHHhccccCCC
Confidence            665555554444444 45678876643

>TIGR00889 2A0110 nucleoside transporter

Probab=99.67  E-value=4.3e-15  Score=127.98  Aligned_cols=212  Identities=11%  Similarity=0.060  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-chhhHHHHHHH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTLPLTLS   91 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~   91 (273)
                      +.+..++......+..|.++.++++.       .+.+..+.|++.+...++.+++++++|.++||+|| |+++.++.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~   79 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKT-------LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG   79 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            45566777788888889999998653       36777889999999999999999999999999965 66777777777


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH----H----hcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV----A----DNISERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      .+...+..+.++   ++.+++.+++.|+ ..+...+...+..    .    |......|.+..|      .+|..+||.+
T Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l  149 (418)
T TIGR00889        80 ALLLFFAAQVTT---PAGMFPVLLANSL-AYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWA  149 (418)
T ss_pred             HHHHHHHHHhcC---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHH
Confidence            777777777777   7888888888887 3333334444443    2    2233334555544      3678888888


Q ss_pred             HHHhhh---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHH
Q 024030          164 ARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (273)
Q Consensus       164 ~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (273)
                      ++.++.   +.+|++.++..++..+. .+.+||+++.++++                        +.+.++  ..+...+
T Consensus       150 ~g~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~------------------------~~~~~~--~~~~~~~  202 (418)
T TIGR00889       150 VSLLDIELSNIQLYITAGSSALLGVF-ALTLPDIPVAKSTA------------------------KMSIKV--MLGLDAF  202 (418)
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHH-HhcCCCCCCCcccc------------------------ccCHHH--HhhhhHH
Confidence            887733   33566666655554443 45667653222110                        000000  1111122


Q ss_pred             HHhhcchhHHHHHHHHHhccccccceee
Q 024030          241 LLRSSVTLSQAAVVAFFSGLSEGGMQAS  268 (273)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (273)
                      .++|+|+++.+.+..++........+.+
T Consensus       203 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~  230 (418)
T TIGR00889       203 ILFKNKRMAIFFFFSMLLGAPLQITNIF  230 (418)
T ss_pred             HHhcCCCeeeHHHHHHHHHhHHHHHHHh
Confidence            3678888888877777766554443333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.66  E-value=1.7e-16  Score=140.54  Aligned_cols=144  Identities=24%  Similarity=0.275  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHH
Q 024030           48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINC  127 (273)
Q Consensus        48 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  127 (273)
                      .+.....+..+++.++.+++++++|.++||+|||++++.+.++..++.+..+++++   ++.+++.|++.|++..+ ...
T Consensus       115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~~~~~-~~~  190 (521)
T KOG0255|consen  115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGFFGSG-PLT  190 (521)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhccc-hhH
Confidence            34456677888999999999999999999999999999999999999999999999   99999999999995544 448


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030          128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (273)
Q Consensus       128 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      ....++.|++++++|+.+..+ ......++.++|..++++  +||+.+++..+...+.+++ ++..||+++.
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rw  260 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL-WFLPPESPRW  260 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHccCcChHH
Confidence            999999999999999999999 777777777777777766  8999999988877766665 5556687653

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.66  E-value=1.9e-15  Score=109.70  Aligned_cols=131  Identities=21%  Similarity=0.313  Sum_probs=110.1

Q ss_pred             HHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Q 024030           59 IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS  138 (273)
Q Consensus        59 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  138 (273)
                      .+.++..+++++.|++.||+|||+.+..+.....++.......++   .+.+.+.+++.|+ +.+...+...+++.|..|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGF-GAAFALVAGAALIADIYP   81 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHCC
Confidence            446778899999999999999999999988888888777777766   7888889999998 556666889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030          139 ERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       139 ~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      +++|++++++.+....+|..++|.+++.+    +|++.+.+.+...++..+...+..||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999988877    67888888777776666665555554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.66  E-value=3.4e-14  Score=121.43  Aligned_cols=224  Identities=14%  Similarity=0.124  Sum_probs=145.7

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHH--HHHHHHHHHhHhhhhhH-HhhhhCCchhhHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQ--QAIIGLGTLVMMPVIGN-LSDQYGRKAMLTL   86 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~g~-l~dr~grr~~~~~   86 (273)
                      +..+....+.+.+......|.+|.+++|.        +.+..+.|+.  .....+..++.+|+.+. .+||+||||.+++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~--------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~   74 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRED--------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL   74 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence            34455566778888899999999999875        5666778886  35668888889999855 7999999998765


Q ss_pred             HHHHH-HHHHHHHH-hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLS-IIPLAILA-YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        87 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                      +..+. ........ +........+++....+.++ ......+..+++..|..++++++...+....+..+|..+|+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~  153 (390)
T TIGR02718        75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASL-ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT  153 (390)
T ss_pred             HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55332 22222222 21121112233333444444 44455577888888888888888888888888888888888655


Q ss_pred             HH----hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHH
Q 024030          165 RF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (273)
Q Consensus       165 ~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (273)
                      +.    .+|+.+|++.+++.++..+... ..+|++++++++                         + .+   .. +..+
T Consensus       154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~~-~~~~~~~~~~~~-------------------------~-~~---~~-~~~~  202 (390)
T TIGR02718       154 LVLFGKFGQRPAFLLVACVPLASLVCVL-WLKDRAVASPEA-------------------------P-LA---RR-ASLF  202 (390)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHH-HcCCCCcCcccc-------------------------c-hh---hH-HHHH
Confidence            44    4999999999888776665533 344322111110                         0 00   11 1123


Q ss_pred             HHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      ...|+|.++...+..+++..+....+.+.+.|+
T Consensus       203 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  235 (390)
T TIGR02718       203 RFFRRPLAWSLLALALLSAMTAVSGFGLSKLYL  235 (390)
T ss_pred             HHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            366788888888888888877777777776653

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.65  E-value=2.3e-18  Score=149.83  Aligned_cols=147  Identities=20%  Similarity=0.274  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030           49 AIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (273)
Q Consensus        49 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  128 (273)
                      +....++..+...++..++++++|.++||+|||+.++.+..+..++.++..+++....++.+.+.|++.|+ +.|...+.
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~-~~g~~~~~  122 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGF-GIGGAYVV  122 (451)
T ss_pred             hHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            55677899999999999999999999999999999999999999999999998811118999999999998 66666689


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h---hHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030          129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S---TTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (273)
Q Consensus       129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      ...++.|..|+++|++..++.+....+|..++..++...    +   ||..+.+..+..++..+. .+++||+++-
T Consensus       123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~w  197 (451)
T PF00083_consen  123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPESPRW  197 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccce
Confidence            999999999999999999999999999888887665433    4   888887777666555444 5678998753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PTZ00207 hypothetical protein; Provisional

Probab=99.64  E-value=6.5e-14  Score=123.53  Aligned_cols=146  Identities=12%  Similarity=0.076  Sum_probs=112.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHhhhchh
Q 024030           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEG  123 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~  123 (273)
                      +.+..+.+++.+... ....+.++.|+++||+|+|+++.++.++..++.++++++.+.   .+++.+++.|++.|+ +.+
T Consensus        58 gls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~-G~~  135 (591)
T PTZ00207         58 NLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL-GCM  135 (591)
T ss_pred             CcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH-HHH
Confidence            455555666665533 334567789999999999999999999999999888876110   128899999999998 556


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVC-GTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-gp~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      ...+.....+.+++| ++||++.|+.....++|..+ +++..+.+  +|+..|++.+++.++..++.+.++++++
T Consensus       136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            666778888899997 78999999999999999864 56666665  7788888888888777666666666553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.64  E-value=4.7e-14  Score=123.53  Aligned_cols=226  Identities=11%  Similarity=0.033  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh----hhCCchhhH-HHH
Q 024030           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT-LPL   88 (273)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~-~~~   88 (273)
                      .++.+...+......++++.|++|.       .+.+...+|.+..+..+...+..|+.|.++|    |+||||.++ .+.
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v-------~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~   84 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDV-------VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGT   84 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhh
Confidence            3455556666777888899998764       3677889999999999999999999999999    669965544 566


Q ss_pred             HHHHHHHHHHHhccC---chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           89 TLSIIPLAILAYRRS---ISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        89 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                      +..+++..++...++   ...++.+++..++.++ +.........++.+|+. ++++|.+..+.-....++|..+.+.+.
T Consensus        85 i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~  163 (473)
T PRK10429         85 LANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGM-TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT  163 (473)
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHH-HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666555543332   1123344455555555 44555677888999998 689999999886666666654443332


Q ss_pred             H----Hh-------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccc
Q 024030          165 R----FL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP  233 (273)
Q Consensus       165 ~----~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (273)
                      .    .+       +|+....+.+++.++..+..++..||..+.++.+                         ...+...
T Consensus       164 ~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------~~~~~~~  218 (473)
T PRK10429        164 LPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV-------------------------SAEGSHL  218 (473)
T ss_pred             HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc-------------------------cccccCC
Confidence            2    12       2333444444444433333333345532111110                         0001112


Q ss_pred             hHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       234 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      +.++.++.+++||.++.+++..++.+..........++|
T Consensus       219 ~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~  257 (473)
T PRK10429        219 TLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYY  257 (473)
T ss_pred             CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeE
Confidence            466666778899999998888888877666555554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.63  E-value=5e-14  Score=120.94  Aligned_cols=169  Identities=20%  Similarity=0.251  Sum_probs=129.0

Q ss_pred             HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (273)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~   97 (273)
                      +..........+.+|.|..+....    ........|.+.++..++..++.+..|+++||+|||+.+..+.....++.+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  304 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGN----VSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP  304 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            333444555667888887764211    1122234567777778888999999999999999999998888777776666


Q ss_pred             HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHH
Q 024030           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAF  173 (273)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~  173 (273)
                      ....++   .+.+.+.+++.|+ +.+...+...+.+.+..|+++|++.+++.+....+|..+||.++|.+    +|+..|
T Consensus       305 ~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f  380 (408)
T PRK09874        305 MSFVQT---PLQLGILRFLLGA-ADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVF  380 (408)
T ss_pred             HHHhcc---HHHHHHHHHHHHh-hhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHH
Confidence            666655   6777788888897 55666688888889999999999999999999999999999999877    788999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC
Q 024030          174 QAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      .+.+++.++..++..+..+++
T Consensus       381 ~~~~~~~l~~~~~~~~~~~~~  401 (408)
T PRK09874        381 LVTAGVVLFNAVYSWNSLRRR  401 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            988888877766655544443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.63  E-value=2.5e-14  Score=126.38  Aligned_cols=142  Identities=24%  Similarity=0.294  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHH
Q 024030           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLAL  130 (273)
Q Consensus        51 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  130 (273)
                      ...+++.+...++..+++++.|+++|++|||+.++++.+...++.++.+++++   .+.+.++|++.|+ +.|.......
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---~~~l~~GR~l~G~-g~G~~~~~~p  164 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---WYQLIVGRILTGL-GVGGASVLAP  164 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhcc-chhhhhhcch
Confidence            45689999999999999999999999999999999999999999999999998   9999999999998 6666668999


Q ss_pred             HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030          131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (273)
Q Consensus       131 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      .+++|..|++.||...+..+....+|..++..++...     +||..+.+..+.+++..+. .+++||+++.
T Consensus       165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~  235 (513)
T KOG0254|consen  165 VYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRW  235 (513)
T ss_pred             hhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHH
Confidence            9999999999999999999999999999997776666     5998888877777666666 7888988753

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.63  E-value=9.5e-14  Score=119.72  Aligned_cols=164  Identities=10%  Similarity=0.027  Sum_probs=123.8

Q ss_pred             HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc
Q 024030           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (273)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  104 (273)
                      .....++|.|.++.       .+.+....|++.+...++..++.++.+++.||.++++.+..+.++..++.+++.+.++ 
T Consensus       240 ~~~~~~~p~~~~~~-------~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-  311 (417)
T PRK10489        240 SAVRVLYPALADEV-------WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM-  311 (417)
T ss_pred             HhHHHhhHHHHHhc-------cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch-
Confidence            34556788887652       2445567788888999999999999999999988888888887777777766666665 


Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHH
Q 024030          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVS  180 (273)
Q Consensus       105 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~  180 (273)
                        .+...+..++.|+ +.+...+...+++.|..|++.|++++|+.+....+|..+||.+.|.+    +.+..+...++..
T Consensus       312 --~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~  388 (417)
T PRK10489        312 --WILAVLCLALFGY-LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGL  388 (417)
T ss_pred             --HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence              5666677777787 55555567778999999999999999999999999999999999887    4455666666655


Q ss_pred             HHHHHHHHHHhcCCCCCCC
Q 024030          181 MLAAAYMRVFLKDDVPNDD  199 (273)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~  199 (273)
                      ++..++.....|+.++.+.
T Consensus       389 ~~~~~~~~~~~~~~~~~~~  407 (417)
T PRK10489        389 LIIGVLLLLVLGELRRFRQ  407 (417)
T ss_pred             HHHHHHHHHhccccccccc
Confidence            5555554566666554333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.61  E-value=2.5e-13  Score=116.35  Aligned_cols=159  Identities=17%  Similarity=0.118  Sum_probs=119.5

Q ss_pred             HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (273)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~   99 (273)
                      ...+......++|.|..+.        +.  ...++..+.+.++..++.++.|++.||+|+|+.+..+..+..++.....
T Consensus       228 ~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T PRK05122        228 ASIGFGTIATFITLYYAAR--------GW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW  297 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHc--------cc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            3445555667778777552        11  1234455667788888999999999999999998888887777777766


Q ss_pred             hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 024030          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA  175 (273)
Q Consensus       100 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~  175 (273)
                      ..++   .+.+++..++.|+ +.+...+.......|..|+++|+++.|+.+....+|..++|.+.+.+    +|+..+.+
T Consensus       298 ~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  373 (399)
T PRK05122        298 LAPS---PWMALIGAALTGF-GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLA  373 (399)
T ss_pred             Hhcc---HHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            6665   6667777888887 44555567777888999999999999999999999998888887776    67888888


Q ss_pred             HHHHHHHHHHHHHHHhcC
Q 024030          176 ATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~  193 (273)
                      .+++.++..+...+ +++
T Consensus       374 ~~~~~~~~~~~~~~-~~~  390 (399)
T PRK05122        374 AALAALLGLALTWL-LYR  390 (399)
T ss_pred             HHHHHHHHHHHHHH-hcc
Confidence            87777766655443 444

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.61  E-value=3.4e-14  Score=122.62  Aligned_cols=163  Identities=12%  Similarity=0.037  Sum_probs=124.5

Q ss_pred             HHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC
Q 024030           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS  103 (273)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  103 (273)
                      ........|.|..+...    +.+.+..+.|.+.++..++..++.++.|+++||+|+|+.+..+.++..++..+..+.++
T Consensus       239 ~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~  314 (420)
T PRK09528        239 YDVFDQQFPNFFASFFA----TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG  314 (420)
T ss_pred             HHHHHHHHHHHHHHHHh----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc
Confidence            33344456777665421    11334456788889889999999999999999999999999888888888777777777


Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Q 024030          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAATI  178 (273)
Q Consensus       104 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~  178 (273)
                         .+.+...+++.|+ ..+...+....++.|.+|++.|++..+. .+....+|..++|.+.|++    ||+.+|...++
T Consensus       315 ---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~  390 (420)
T PRK09528        315 ---PLEVSILKLLHAF-EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGG  390 (420)
T ss_pred             ---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence               6777788888887 5555556677889999999988887665 5777889999999998887    78889998888


Q ss_pred             HHHHHHHHHHHHhcCC
Q 024030          179 VSMLAAAYMRVFLKDD  194 (273)
Q Consensus       179 ~~~~~~~~~~~~~~~~  194 (273)
                      +.++..++..+..+++
T Consensus       391 ~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        391 IVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            7776666655555543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.61  E-value=1.5e-13  Score=118.00  Aligned_cols=158  Identities=19%  Similarity=0.153  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (273)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~   96 (273)
                      .+......+....++|.+.++.        +.+....|...+...++..+++++.|+++||+|||+.+..+.+...++..
T Consensus       229 ~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        229 YFFTLIVLYFLLNWLPSLLVGQ--------GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC--------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3333444455566788887653        44555678888888999999999999999999999998887666666666


Q ss_pred             HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHH
Q 024030           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTS  171 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~  171 (273)
                      .....++   .+.+.+..++.|+ ..+...+...++..|.+|+++|+++.|+.+....+|..+||.++|.+     ++..
T Consensus       301 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~  376 (406)
T PRK11551        301 ALAAAPS---FAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVG  376 (406)
T ss_pred             HHHhcCc---HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHH
Confidence            5555555   5556666677776 33344578888999999999999999999999999999999999987     3344


Q ss_pred             HHHHHHHHHHHHHHH
Q 024030          172 AFQAATIVSMLAAAY  186 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~  186 (273)
                      .+.......++..+.
T Consensus       377 ~~~~~~~~~~~~~~~  391 (406)
T PRK11551        377 VIGASIPVILVAALA  391 (406)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.59  E-value=2.3e-13  Score=116.48  Aligned_cols=163  Identities=15%  Similarity=0.150  Sum_probs=115.1

Q ss_pred             HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (273)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~   97 (273)
                      +.............|.|+++..       +.+..+.|.+.+...++.+++.++.|+++||+|||+.+..+.....+....
T Consensus       226 ~~~~~~~~~~~~~~p~~l~~~~-------~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~  298 (393)
T PRK15011        226 TLMWGTNSLYIINMPLFIINEL-------HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG  298 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            3333344455567888886632       444556677777777778888999999999999999887766555544444


Q ss_pred             HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHH
Q 024030           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAF  173 (273)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~  173 (273)
                      ....++   .+..++.+++.++ ..+...+....+..|..|+ +|++++++.+...++|..+||.++|.+    +|+..|
T Consensus       299 ~~~~~~---~~~~l~~~~l~~~-~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~  373 (393)
T PRK15011        299 MLMAHS---PAILLGLQLLNAI-YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVF  373 (393)
T ss_pred             HHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            444444   5666667777665 4455545667778898885 589999999888999999999998886    677788


Q ss_pred             HHHHHHHHHHHHHHHHHhcC
Q 024030          174 QAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~  193 (273)
                      .+..+..++..+. .+..||
T Consensus       374 ~~~~~~~~~~~~~-~~~~~~  392 (393)
T PRK15011        374 WFALVMIIATLFC-LLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHH-HHhhcC
Confidence            7776666665555 445554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.58  E-value=2.4e-13  Score=114.44  Aligned_cols=229  Identities=17%  Similarity=0.126  Sum_probs=131.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh
Q 024030            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~   84 (273)
                      .+++.++......+...+......|+.|.++++.       .+++..++|.+.++..+..++.+|+.|.++||.|.||-+
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~-------~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L   76 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQV-------AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL   76 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH
Confidence            3466777777777777888899999999999762       388899999999999999999999999999999988765


Q ss_pred             HHHHHHHHH--H-HHHHHhccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 024030           85 TLPLTLSII--P-LAILAYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (273)
Q Consensus        85 ~~~~~~~~~--~-~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (273)
                      +.......+  + .....+.+-  .+.+...++..+..|++..+.. +...+++.+..  ++.+.-.|-.....++|.++
T Consensus        77 l~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~-~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai  153 (412)
T PF01306_consen   77 LWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGV-PLSEAYAERVS--RRNGFEYGRARMWGSIGFAI  153 (412)
T ss_dssp             HHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHH-HHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hHHHHHHHHHH--HHhcCCcchHHHHhhHHHHH
Confidence            544332222  2 122222111  0101222333333454233333 67777776664  33444556667788889889


Q ss_pred             HHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHH
Q 024030          160 GTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (273)
Q Consensus       160 gp~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (273)
                      +..++|.+   +.+..|++.....++..++.....|+.+++.+.++                  .+ .   .+++..+.+
T Consensus       154 ~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~------------------~~-~---~~~~~~~~~  211 (412)
T PF01306_consen  154 ASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD------------------AL-G---AKKDKVSLK  211 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST------------------TS-S---S------HH
T ss_pred             HHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc------------------cc-c---cCCCCCcHH
Confidence            98888887   44566776555444444432333333222221110                  00 0   011111233


Q ss_pred             HHHHHHhhcchhHHHHHHHHHhccccccce
Q 024030          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQ  266 (273)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  266 (273)
                      + ...++|+|++|.+.+........+..++
T Consensus       212 ~-~~~l~k~~~fw~~~l~v~g~~~~Y~vfd  240 (412)
T PF01306_consen  212 D-VLSLFKMRNFWFFVLFVIGVAAIYDVFD  240 (412)
T ss_dssp             H-HHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence            3 2237789999988876655554444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.58  E-value=2.9e-14  Score=118.77  Aligned_cols=181  Identities=14%  Similarity=0.179  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHH
Q 024030           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP   94 (273)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~   94 (273)
                      .+.+......+.+....|.+-....+.....-+.+.-..+.+..+..++.+++++++|++.||+|||+++....++.+++
T Consensus        48 ~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~  127 (538)
T KOG0252|consen   48 MGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIIC  127 (538)
T ss_pred             hhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHH
Confidence            34444555555555555555443322222223355566788888999999999999999999999999999999999999


Q ss_pred             HHHHHhccCc----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 024030           95 LAILAYRRSI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (273)
Q Consensus        95 ~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l---  167 (273)
                      .++++.....    ...+++...|++.|+ +-|.-+|.+.+..+|...++.||...+.....++.|...|.+++-.+   
T Consensus       128 t~~~~~s~~~~~~~~~m~~L~~~R~~LGi-GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~  206 (538)
T KOG0252|consen  128 SALSGLSVGTTSPLGVMMTLCFFRFLLGI-GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAI  206 (538)
T ss_pred             HHHhccCCCCCCCcchhhHHHHHHHHhhc-cccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHH
Confidence            8876654332    235788899999999 55666699999999999999999988887777776666555444332   


Q ss_pred             ----------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030          168 ----------------STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (273)
Q Consensus       168 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                                      -||..+.+.++..+.. +..-+.+||+++-
T Consensus       207 fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-ly~Rl~M~Et~~Y  251 (538)
T KOG0252|consen  207 FEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-LYFRLKMPETARY  251 (538)
T ss_pred             HhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-HHhhhcCCcchhH
Confidence                            2666665554443333 3325567887653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.58  E-value=2.9e-13  Score=118.44  Aligned_cols=167  Identities=14%  Similarity=0.050  Sum_probs=114.6

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      .++...+..++..........++|.|+++.       .+.+..+.++..+...++..++.++.|+++||+|||+.+....
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~  331 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQE-------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI  331 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            445555555555555566778999998663       2555566788888889999999999999999999998776554


Q ss_pred             HHHHHHHHHHH--hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 024030           89 TLSIIPLAILA--YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLAAR  165 (273)
Q Consensus        89 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp~~~~  165 (273)
                      ....++.....  ..++   .+...+.+++.|++..+.. ........|.+|++.|+++.|+.+...++ |..++|.+.|
T Consensus       332 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G  407 (467)
T PRK09556        332 ALALIIFTLGVYQHATS---EYMYLASLFALGFLVFGPQ-LLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG  407 (467)
T ss_pred             HHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHhhHH-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            44333322222  2223   4555566777775333332 23346777999999999999999998886 6688887776


Q ss_pred             Hh-h---------------hHHHHHHHHHHHHHHHHH
Q 024030          166 FL-S---------------TTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       166 ~l-~---------------~~~~~~~~~~~~~~~~~~  186 (273)
                      .+ +               |+..|.+..+..+++.+.
T Consensus       408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~  444 (467)
T PRK09556        408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICL  444 (467)
T ss_pred             HHhcccccccccccccccChHHHHHHHHHHHHHHHHH
Confidence            65 3               677787776666655444

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.58  E-value=2.8e-13  Score=119.36  Aligned_cols=143  Identities=14%  Similarity=0.105  Sum_probs=103.6

Q ss_pred             HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchh
Q 024030           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF  106 (273)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  106 (273)
                      ...++|.|+++.       .+.+....|.+.+...++..++.++.|+++||+|||+++..+..+..+.........+. .
T Consensus       294 ~~~~lp~~l~~~-------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~  365 (496)
T PRK03893        294 IQALLPTYLKTD-------LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGA-N  365 (496)
T ss_pred             HHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccc-H
Confidence            456889998542       25566778899999999999999999999999999999887776655554433333221 1


Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Q 024030          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATI  178 (273)
Q Consensus       107 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~  178 (273)
                      .+......++.+..+.+. .+...+++.|.+|+++|++++|+.+....+|..+||.++|.+    +++..+...+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~  440 (496)
T PRK03893        366 VWVLGLLLFFQQMLGQGI-SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF  440 (496)
T ss_pred             HHHHHHHHHHHHHHhccc-chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            333434444444323333 356778899999999999999999999999999999999887    55655554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.57  E-value=8.5e-14  Score=121.27  Aligned_cols=165  Identities=14%  Similarity=0.139  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh--CCchhhHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLTL   86 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~   86 (273)
                      .++......++...+......++|.|.++.        +.+....|++.++..++.++++++.|+++||.  ++|+....
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  313 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKDK--------GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLF  313 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH
Confidence            344445555555566666677888887653        55567778888999999999999999999984  33433333


Q ss_pred             --HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 --PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                        +.+...++.++....++   .+.+++.+++.|+ +.+...+...+.+.|.+|++++++++|+.+...++|..+||.++
T Consensus       314 ~~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~-~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  389 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAGD---YTGLVIYCIFFGL-SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA  389 (455)
T ss_pred             HHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHH-HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence              33333333444445555   6777888889998 55666678889999999999999999999999999999999999


Q ss_pred             HHh-----hhHHHHHHHHHHHHHHHH
Q 024030          165 RFL-----STTSAFQAATIVSMLAAA  185 (273)
Q Consensus       165 ~~l-----~~~~~~~~~~~~~~~~~~  185 (273)
                      |.+     +|+..|++.+++.++..+
T Consensus       390 G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       390 GRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             eeeehhcCCcchHHHHhhHHHHHHHH
Confidence            876     477888877766554433

>PRK12382 putative transporter; Provisional

Probab=99.57  E-value=9.5e-13  Score=112.58  Aligned_cols=158  Identities=17%  Similarity=0.175  Sum_probs=121.5

Q ss_pred             HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (273)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~   99 (273)
                      ...+......+.|.|.++.        +.+  ..++....+.++..+++++.|++.||+|+|+.+..+..+..++..+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~  297 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFASK--------GWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW  297 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhc--------CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH
Confidence            3344555666777777652        111  134455667778889999999999999999999988888888777776


Q ss_pred             hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 024030          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA  175 (273)
Q Consensus       100 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~  175 (273)
                      +.++   .+...+..++.|+ +.+...+...+.+.|..|+++|+++.|+.+....+|..+||.+.+.+    +|+..|.+
T Consensus       298 ~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~  373 (392)
T PRK12382        298 LAPT---AWVALAGAALTGA-GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLA  373 (392)
T ss_pred             Hccc---HHHHHHHHHHHHH-HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            6665   6667777888887 55555577788889999999999999999999999999999998876    78888888


Q ss_pred             HHHHHHHHHHHHHHHh
Q 024030          176 ATIVSMLAAAYMRVFL  191 (273)
Q Consensus       176 ~~~~~~~~~~~~~~~~  191 (273)
                      .+.+.++..++..+..
T Consensus       374 ~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        374 GAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            8877777666644443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.56  E-value=4.4e-13  Score=112.21  Aligned_cols=167  Identities=23%  Similarity=0.247  Sum_probs=138.0

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCch-hhHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-MLTLP   87 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~   87 (273)
                      .++......+.............|.+.++..       +.+..+.+...+...++..++.++.|++.||+|||+ .+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  248 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVL-------GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG  248 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3444455556666667777788888886632       345567788889999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .....++.......++   .+...+..++.|+ +.+...+...+++.|..|+++|++.+|+.+...++|..++|.+.+.+
T Consensus       249 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l  324 (352)
T cd06174         249 LLLAALGLLLLALAPS---LALLLVALLLLGF-GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL  324 (352)
T ss_pred             HHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888888777   7778888888898 55666689999999999999999999999999999999999999877


Q ss_pred             ----hhHHHHHHHHHHHHHHHHH
Q 024030          168 ----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       168 ----~~~~~~~~~~~~~~~~~~~  186 (273)
                          +|+..+.+.+++.++..+.
T Consensus       325 ~~~~~~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         325 LDTGGYGGVFLILAALALLAALL  347 (352)
T ss_pred             hcccCcchHHHHHHHHHHHHHHH
Confidence                6788888887777766554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09669 putative symporter YagG; Provisional

Probab=99.56  E-value=5.8e-13  Score=115.81  Aligned_cols=210  Identities=12%  Similarity=-0.010  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchhhH-HHHHH
Q 024030           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LPLTL   90 (273)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~-~~~~~   90 (273)
                      +.+...........+++.|+.|.       .+++...+|.+.++..+...+..|+.|.++||    +||||.++ .+.+.
T Consensus        17 g~~~~~~~~~~~~~~l~~~~t~~-------~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~   89 (444)
T PRK09669         17 GDTACNLVWQTVMLFLAYFYTDV-------FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIP   89 (444)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHH
Confidence            33434444555667788887653       47888899999999999999999999999998    78866555 56566


Q ss_pred             HHHHHHHHHhccC---chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 024030           91 SIIPLAILAYRRS---ISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAA--  164 (273)
Q Consensus        91 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~--  164 (273)
                      .+++..+....++   ....+..++..++.+. .......+..++.+|+. ++++|++..+.......+|..+++.+.  
T Consensus        90 ~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~p  168 (444)
T PRK09669         90 FGVVCLLTFYTPDFGATGKIIYACVTYILLSL-VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALP  168 (444)
T ss_pred             HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665554444432   1223445555555554 33345567778999987 568899888888777777766665432  


Q ss_pred             --HHh-------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchH
Q 024030          165 --RFL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (273)
Q Consensus       165 --~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (273)
                        ..+       +|+..+.+.+++.++..++.++..+|..+++++                          +    ..+.
T Consensus       169 l~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~--------------------------~----~~~~  218 (444)
T PRK09669        169 LVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVD--------------------------N----SSSV  218 (444)
T ss_pred             HHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCc--------------------------C----CCCH
Confidence              222       455555555555555444433334442111100                          0    0133


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHhccccc
Q 024030          236 RDLICLLRSSVTLSQAAVVAFFSGLSEG  263 (273)
Q Consensus       236 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~  263 (273)
                      ++.++.++|||.++.+++..++...+..
T Consensus       219 ~~~~~~~~~n~~~~~l~~~~~~~~~~~~  246 (444)
T PRK09669        219 WKDLKLLLGNSQWRIMFIFNVVLLTAVV  246 (444)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            4455567889999988877776655543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.55  E-value=3.1e-13  Score=114.34  Aligned_cols=164  Identities=16%  Similarity=0.209  Sum_probs=117.5

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      ++......+.............+.+.++.        +.+....+.+.+...++..+++++.|+++||+|||+.+..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  278 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYGQSL--------GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG  278 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            33333333433344444445556665442        3344566788888999999999999999999999999988888


Q ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (273)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--  167 (273)
                      ...++.....+.++.. .+.++...++.|+ ..+...+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+  
T Consensus       279 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       279 ISAVGMAAMLFIPMLN-DVLFLATVALVFF-TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHHHHHHHHHHcccch-hHHHHHHHHHHHH-HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888777666655421 2333444556665 33444467778899999999999999999999999999999988876  


Q ss_pred             --hhHHHHHHHHHHHHHH
Q 024030          168 --STTSAFQAATIVSMLA  183 (273)
Q Consensus       168 --~~~~~~~~~~~~~~~~  183 (273)
                        +|+..|.+.+++.+++
T Consensus       357 ~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       357 EIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhchhhHHHHHHHHHHHh
Confidence              6788887776655543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.55  E-value=8.6e-13  Score=115.99  Aligned_cols=134  Identities=19%  Similarity=0.212  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  133 (273)
                      .|+.+...++..++.++.|+++|.+|||..++.+.++..++.++.+.+++   ...++....+.|+ +.|.. ......+
T Consensus        81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~---~~~~iag~~l~Gv-gaG~~-~~~~~~i  155 (599)
T PF06609_consen   81 SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN---MNTFIAGMVLYGV-GAGVQ-ELAALAI  155 (599)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc---HHHHHHHHHHHHH-hhHHH-HHHHHHH
Confidence            55666778899999999999999999999999999999999999999999   8889999999998 55655 3566678


Q ss_pred             HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030          134 ADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK  192 (273)
Q Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      +|..|.+.|..+.++.....-+....+|.++..+    +|||.|++..+...+.+++..++..
T Consensus       156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999998887777665555555677777655    8999999998887776665454443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.55  E-value=1.6e-12  Score=111.23  Aligned_cols=178  Identities=12%  Similarity=0.049  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      ..+......++...+......++|.++++.        +.+....|...+.+.++..+++++.|++.||+|||+.+..+.
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~--------g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~  277 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIEI--------GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLAL  277 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence            344444444455566667778899998653        455567788889999999999999999999999999988887


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .+..++..++...+..  ...+.  ..+.|+ +.+...+.......+.. |+++|++..|+.+....++..++|.+.+++
T Consensus       278 ~l~~~~~~~~~~~~~~--~~~~~--~~l~g~-g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l  352 (393)
T PRK09705        278 VLQLVGFCGFIWLPLQ--LPVLW--AMVCGL-GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL  352 (393)
T ss_pred             HHHHHHHHHHHHccch--HHHHH--HHHHHH-hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766666554433331  12222  234455 33334456666666666 467899999999999999999999999988


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 024030          168 -----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (273)
Q Consensus       168 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (273)
                           ++...|.+.++..++..+......||++.++.
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        353 RSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence                 24566667666666665555556666654443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.55  E-value=1.8e-13  Score=116.61  Aligned_cols=186  Identities=18%  Similarity=0.203  Sum_probs=149.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-chhh
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAML   84 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~   84 (273)
                      .+|.++...+..++.....+.+.+-.-.|.++.      +.+.+....|++.+...++.++.+|.+|.++.|.+. |+++
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl  105 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL  105 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhc------CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence            467788888888998888888888888888662      224445677999999999999999999999999997 8888


Q ss_pred             HHHHHHHHHHHHHH-Hh--ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030           85 TLPLTLSIIPLAIL-AY--RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (273)
Q Consensus        85 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp  161 (273)
                      +.+.+..+++.+++ .+  .++. ..++++++|++.|+ +.+.. +...+|+++....++|.++++....+..+|..+||
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~-~~y~mL~~R~l~Gv-g~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp  182 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNG-VKYLMLVARILTGV-GVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP  182 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHcCc-CcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence            99999999998887 32  2221 47899999999998 55555 78999999998889999999999888888888888


Q ss_pred             HHHHHh------h-----------hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030          162 LAARFL------S-----------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (273)
Q Consensus       162 ~~~~~l------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (273)
                      .+...+      |           +..+-++.+++.++.+++..++++|..++..+
T Consensus       183 ~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~  238 (488)
T KOG2325|consen  183 TIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIID  238 (488)
T ss_pred             HHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccc
Confidence            776554      1           14567788888888888878888887665544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=8.2e-13  Score=112.06  Aligned_cols=165  Identities=17%  Similarity=0.219  Sum_probs=117.1

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      ++......++...........+|.++++..       +.+..+.|++.........++.++.|++.||+|||+.+..+.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~  273 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHEL-------GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAAL  273 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHH
Confidence            333333333333334445566788875532       3444566777777677778888999999999999998887776


Q ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (273)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--  167 (273)
                      ...+........++   .+.+.+.+++.|+ +.+...+...++..|..|+ ++++++++.+...++|..++|.+++.+  
T Consensus       274 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~  348 (375)
T TIGR00899       274 AGVAFYTGLAADNS---LWALLMLQLLNAI-FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE  348 (375)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555444444444   5666677788887 4555557788888998875 567999999999999999999998876  


Q ss_pred             --hhHHHHHHHHHHHHHHHHH
Q 024030          168 --STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       168 --~~~~~~~~~~~~~~~~~~~  186 (273)
                        +|+..|.+.++..++..+.
T Consensus       349 ~~g~~~~~~~~~~~~~~~~~~  369 (375)
T TIGR00899       349 RWSYHAVYWFAIVMLIVALFC  369 (375)
T ss_pred             hccchhHHHHHHHHHHHHHHH
Confidence              6788888877776665555

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.54  E-value=1.6e-12  Score=110.76  Aligned_cols=165  Identities=15%  Similarity=0.093  Sum_probs=132.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.++...+..++...+......+.|.|++|.        +.+....|.+.+...++..+..++.+++.||+|+|+.+.+
T Consensus       204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~--------g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~  275 (382)
T TIGR00902       204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAA--------GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLI  275 (382)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHH
Confidence            34455556666666677777888999998653        5566777888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAAR  165 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~gp~~~~  165 (273)
                      +.+...+....+.+.++   .+.+++..++.|+ ..+...+....++.+. |+++|+++.++++ ...++|..+||.++|
T Consensus       276 ~~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~-~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G  350 (382)
T TIGR00902       276 SAIACVGRWAIIGAIEA---FPLIFLLQILHCG-TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG  350 (382)
T ss_pred             HHHHHHHHHHHHHhHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888777   8888889999998 6677778889999998 9999999999986 577899999999999


Q ss_pred             HhhhH---HHHHHHHHHHHHHH
Q 024030          166 FLSTT---SAFQAATIVSMLAA  184 (273)
Q Consensus       166 ~l~~~---~~~~~~~~~~~~~~  184 (273)
                      .+..+   ..|...+++.+++.
T Consensus       351 ~l~~~~g~~~~~~~~~~~~~~~  372 (382)
T TIGR00902       351 FIYPTLGAGTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHhccHHHHHHHHHHHHHHH
Confidence            98322   34555555555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.53  E-value=1.3e-13  Score=119.28  Aligned_cols=219  Identities=14%  Similarity=0.105  Sum_probs=148.0

Q ss_pred             HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh----hhCCchhhH-HHHHHHH
Q 024030           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT-LPLTLSI   92 (273)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~-~~~~~~~   92 (273)
                      +...+.......+++.|+.|.       .+.++...|.+..+..+...+..|+.|.++|    |+||||.++ .+.+..+
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~-------~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~   83 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDV-------LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLA   83 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHH
Confidence            333444444555677777553       3777789999999999999999999999999    899887766 5667777


Q ss_pred             HHHHHHHhc-c-Cc---hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 024030           93 IPLAILAYR-R-SI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAAR-  165 (273)
Q Consensus        93 ~~~~~~~~~-~-~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~gp~~~~-  165 (273)
                      ++..++... + +.   ....++.+..++..+ +.........++.+|..+ +++|.+..+.-.....+|..+...+.. 
T Consensus        84 ~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~-~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~  162 (428)
T PF13347_consen   84 LSFFLLFSPPPAGLSFTAKLVWLFVFYILFDI-AYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI  162 (428)
T ss_pred             HHHHHhhccccchhhhhhHHHHHHHHHHHHHH-hhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            776666654 3 11   112334555555565 445555778889999987 578999999988888887754433333 


Q ss_pred             ---Hh-------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchH
Q 024030          166 ---FL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (273)
Q Consensus       166 ---~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (273)
                         .+       +|++...+.+++..+..++..+..||++++.++                            .++..+.
T Consensus       163 l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~----------------------------~~~~~~~  214 (428)
T PF13347_consen  163 LVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTE----------------------------QEKKISL  214 (428)
T ss_pred             hhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccc----------------------------ccccccc
Confidence               22       366667777777766666666667772111111                            1111133


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       236 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      ++.++.++|||.++.+....++..++........++|
T Consensus       215 ~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~  251 (428)
T PF13347_consen  215 RDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYY  251 (428)
T ss_pred             ccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            4445567889999999999999888888777666554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.52  E-value=4.2e-12  Score=108.19  Aligned_cols=153  Identities=15%  Similarity=0.136  Sum_probs=111.2

Q ss_pred             HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (273)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~   96 (273)
                      .+...........++|.|.++.        +.+....|...+...++..+++++.|++.||+|+|+.+..+.....++..
T Consensus       209 ~~~~~~~~~~~~~~lp~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~  280 (381)
T PRK03633        209 CIISGIVLGSLYGLMPLYLNHQ--------GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSI  280 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            3333344445556788887653        44555678888888999999999999999999999998887777666554


Q ss_pred             HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 024030           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA  172 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~  172 (273)
                      ...  ..    +.......+.|+ +.+...|...+.+.|..|+++++...+..+...++|..+||.++|.+    ++++.
T Consensus       281 ~~~--~~----~~~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~  353 (381)
T PRK03633        281 AML--SQ----AAMAPALFILGA-AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLL  353 (381)
T ss_pred             HHh--hh----HHHHHHHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            332  21    222344556665 33345588888899999988888888888888999999999999987    56777


Q ss_pred             HHHHHHHHHHHH
Q 024030          173 FQAATIVSMLAA  184 (273)
Q Consensus       173 ~~~~~~~~~~~~  184 (273)
                      |.+.+.+.++..
T Consensus       354 f~~~~~~~l~~~  365 (381)
T PRK03633        354 FIMIASVSFIYL  365 (381)
T ss_pred             HHHHHHHHHHHH
Confidence            777666555443

>PRK09952 shikimate transporter; Provisional

Probab=99.52  E-value=3.3e-12  Score=110.81  Aligned_cols=169  Identities=14%  Similarity=0.109  Sum_probs=108.6

Q ss_pred             HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (273)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~   96 (273)
                      .+....+.+....+.|.|.++..+.       +......+.....+...++.++.|+++||+|||+.+..+.++..++..
T Consensus       259 ~~~~~~~~~~~~~~~~~y~~~~~g~-------s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~  331 (438)
T PRK09952        259 RLCELLTMYIVTAFALNYSTQNLGL-------PRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3444556666778888888664322       222223333444566778889999999999999998877666555443


Q ss_pred             HHHhc-cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHh------h
Q 024030           97 ILAYR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG-VLSASFVCGTLAARFL------S  168 (273)
Q Consensus        97 ~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~gp~~~~~l------~  168 (273)
                      .+... ...+..+.+++..++.++ +.+...+...++++|.+|++.|+.+.++.+. +..+|+.++|.+.+.+      +
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~  410 (438)
T PRK09952        332 PFFMALEAQSIFWIVFFSIMLANI-AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGS  410 (438)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            33221 111113344444555565 4455557788999999999999999998654 4558899999998886      2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          169 TTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      |..++.+.++..++..+. .+..||+
T Consensus       411 ~~~~~~~~~~~~~i~~v~-~~~~~~~  435 (438)
T PRK09952        411 WHSVAIYLLAGCLISAMT-ALLMKDN  435 (438)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHcccc
Confidence            566666665555555544 3445553

>PRK10504 putative transporter; Provisional

Probab=99.52  E-value=2.4e-12  Score=112.75  Aligned_cols=152  Identities=13%  Similarity=0.167  Sum_probs=114.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      +.+.......++...+........|.|.+...       +.+....|+......++..++.++.|++.||+|||+++..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~  333 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGL-------GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVAT  333 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            44555555566666666666667888876532       45556778888888888888999999999999999999988


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ..+..+...++.+....++.+.+.+..++.|+ +.+...+.......+..|+++++.++++.++...+|..+|+.+++.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        334 TLGLALVSLLFMLVALLGWYYLLPFVLFLQGM-VNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777776665554322223444445566676 55566678888999999999999999999999999999999988876

>PRK03545 putative arabinose transporter; Provisional

Probab=99.52  E-value=2.4e-12  Score=110.00  Aligned_cols=170  Identities=12%  Similarity=0.137  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      ++......++..........++|.++++..       +.+....|++.+...++.++++++.|+++||+|||+... +..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~  278 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVA-------GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIA  278 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHH
Confidence            333333333334444444566777776532       344456788888889999999999999999999886544 433


Q ss_pred             HHHHHHHH-HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024030           90 LSIIPLAI-LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (273)
Q Consensus        90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-  167 (273)
                      ...++... ....++   .+.+.+..++.|+ +.+...+...+.+.+..| ++|++++|+.+....+|..+||+++|.+ 
T Consensus       279 ~~~~~~~~l~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~  353 (390)
T PRK03545        279 LLLVCLLLLLPAANS---EWHLSVLSIFWGI-AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS  353 (390)
T ss_pred             HHHHHHHHHHHHhch---HHHHHHHHHHHHH-HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333332 233344   5666677777787 334334566777888776 6889999999999999999999999887 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030          168 ---STTSAFQAATIVSMLAAAYMRVFLK  192 (273)
Q Consensus       168 ---~~~~~~~~~~~~~~~~~~~~~~~~~  192 (273)
                         +++..|...+.+.+++.+..+...+
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        354 LHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             hccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence               6788888888777776666555443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.52  E-value=1.8e-11  Score=100.09  Aligned_cols=214  Identities=12%  Similarity=0.059  Sum_probs=142.8

Q ss_pred             HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (273)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~   96 (273)
                      ..+...+.....|++-..+++        .+.+..+++.+.........+..++.|.++||+|||+.-+..+++..++.+
T Consensus        43 Y~La~~aDWLQGpY~Y~LY~~--------yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl  114 (354)
T PF05631_consen   43 YLLAMAADWLQGPYLYALYES--------YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL  114 (354)
T ss_pred             HHHHHHHHHhhcchhHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            334455566666665555443        256666788888888999999999999999999999998888888887765


Q ss_pred             HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHH-h----cCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHh---
Q 024030           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVA-D----NISERQRASAFGILL-GVLSASFVCGTLAARFL---  167 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~-~----~~~~~~r~~~~~~~~-~~~~~g~~~gp~~~~~l---  167 (273)
                       .-..++   ++.+++.|++.|+ +.....++..++.. |    -+|++..+..++... ..+++-.+.+..++..+   
T Consensus       115 -~k~~~~---~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~  189 (354)
T PF05631_consen  115 -TKHSSN---YPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW  189 (354)
T ss_pred             -HHhccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence             334566   8999999999998 66666677777662 2    345555555555444 23333333333444333   


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhh
Q 024030          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (273)
Q Consensus       168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  244 (273)
                         +...||....++.+++.+++....+|...+..+.                           .+..++.++..+.+.+
T Consensus       190 ~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~---------------------------~~~~~~~~~a~~~i~~  242 (354)
T PF05631_consen  190 FGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS---------------------------SSLSGSFREAWRAILS  242 (354)
T ss_pred             hCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc---------------------------cchHHHHHHHHHHHHc
Confidence               2367888887777777666555555543322110                           1111255666677888


Q ss_pred             cchhHHHHHHHHHhccccccceeeee
Q 024030          245 SVTLSQAAVVAFFSGLSEGGMQASFL  270 (273)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (273)
                      ||+++.+.++..++-.+++.+...+.
T Consensus       243 d~ril~LG~~qslFE~smy~FVflWt  268 (354)
T PF05631_consen  243 DPRILLLGLIQSLFEGSMYLFVFLWT  268 (354)
T ss_pred             CchhHHHHHHHHHHHHHHHHheeeee
Confidence            99999999998888777776655543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.51  E-value=1.3e-12  Score=111.26  Aligned_cols=219  Identities=23%  Similarity=0.308  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-chhhHHHHHHH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTLPLTLS   91 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~   91 (273)
                      +....++.........|++|.|+++.        +.+..++|.+.+...+..+++++++|.++||.++ |+.+.++.+..
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~--------G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~   78 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESR--------GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLS   78 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence            34455666777788889999999764        6778899999999999999999999999999864 56666666666


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 024030           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL-----AARF  166 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~-----~~~~  166 (273)
                      .+........++   ++.+++..++..+ ......|...++..+...  ++++-.|-.....++|.+++..     +.+.
T Consensus        79 ~~~~~~~~~~~~---f~~~~~~~~l~~~-~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~  152 (400)
T PF03825_consen   79 ALALLLLAFSSS---FWWLFVIMLLFSF-FFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY  152 (400)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh
Confidence            665555555556   6777777767666 334445788888877765  2334455555566666655533     2222


Q ss_pred             hhh---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHh
Q 024030          167 LST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (273)
Q Consensus       167 l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  243 (273)
                      .++   ...+++.+...++.... .+.+|+.+++++.+                         +..++ +..++. ..+.
T Consensus       153 ~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~-------------------------~~~~~-~~~~~~-~~ll  204 (400)
T PF03825_consen  153 LGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAK-------------------------ESVKK-LLGLDA-LKLL  204 (400)
T ss_pred             hccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccC-------------------------CCccc-ccchHH-HHHh
Confidence            222   23445444443333322 44567665222221                         00010 011122 2377


Q ss_pred             hcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          244 SSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      |+|++....+..++.+......+++.+.|+
T Consensus       205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl  234 (400)
T PF03825_consen  205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYL  234 (400)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999888888777777663

>PRK09848 glucuronide transporter; Provisional

Probab=99.51  E-value=3.2e-12  Score=111.29  Aligned_cols=220  Identities=14%  Similarity=0.033  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh----CCchhh-HHHH
Q 024030           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY----GRKAML-TLPL   88 (273)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~-~~~~   88 (273)
                      .+..+...+......++++.|+++.       .+.+..++|.+.++..+...+..|+.|+++||.    ||||.+ ..+.
T Consensus        14 g~g~~~~~~~~~~~~~~l~~y~~~~-------~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~   86 (448)
T PRK09848         14 SLGDVANNFAFAMGALFLLSYYTDV-------AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGT   86 (448)
T ss_pred             ccchHHhHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHH
Confidence            3455556666777778888888664       366778999999999999999999999999996    777755 4554


Q ss_pred             HHHHHHHHHHHhcc----CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-hhhHHHHHHHHHHH-----HHHHHH
Q 024030           89 TLSIIPLAILAYRR----SISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGV-----LSASFV  158 (273)
Q Consensus        89 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~-----~~~g~~  158 (273)
                      +...+...+....+    .....+..+....+.++ +.+...+...++..+..+ +++|.+..+.-..+     ..++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~  165 (448)
T PRK09848         87 APLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL-CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFL  165 (448)
T ss_pred             HHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH-HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443333322111    11112333444455565 445555666777777654 46788876655443     334556


Q ss_pred             HHHHHHHHhhh----HHHH--HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccccccc
Q 024030          159 CGTLAARFLST----TSAF--QAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (273)
Q Consensus       159 ~gp~~~~~l~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (273)
                      ++|.+++..+.    .+..  .+.+++..+..++.....||+.+++++                             +  
T Consensus       166 ~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~-----------------------------~--  214 (448)
T PRK09848        166 IGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA-----------------------------Q--  214 (448)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc-----------------------------C--
Confidence            66776654321    1111  112222222222222223332111100                             0  


Q ss_pred             chHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       233 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      ++.++.++.++|||.++...+..++...++.......|+|
T Consensus       215 ~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~  254 (448)
T PRK09848        215 PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFY  254 (448)
T ss_pred             CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheee
Confidence            1334445568899999999888888887777766666655

>PRK03699 putative transporter; Provisional

Probab=99.50  E-value=1.6e-12  Score=111.28  Aligned_cols=167  Identities=8%  Similarity=0.054  Sum_probs=120.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      +.++...+..++...+.+....++|.|+++..       +.+..+.|.+.+.+.++..++.++.|+++||++||+.+...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~  277 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKF-------GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVL  277 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence            34444455555555666677789999986632       45566778888888999999999999999999999988877


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ..+..+...+....++   .+.+.+..++.|+ ..+...+...++..|..| +++++..+.......+|..++|.+.|.+
T Consensus       278 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l  352 (394)
T PRK03699        278 AGLALVLMYLFVNTDD---PSHLLYAILGLGF-FSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPI  352 (394)
T ss_pred             HHHHHHHHHHHHHcCC---chHHHHHHHHHHH-HHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            7666665555555555   4455556667776 444444667777777766 4467788888888899999999998887


Q ss_pred             ----hhHHHHHHHHHHHHHHHHH
Q 024030          168 ----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       168 ----~~~~~~~~~~~~~~~~~~~  186 (273)
                          +++..++..+++..+..+.
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        353 VAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHhCchhhhhhhHHHHHHHHHH
Confidence                6677777766666555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.50  E-value=4.3e-13  Score=117.17  Aligned_cols=141  Identities=13%  Similarity=0.145  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHH-HHHHhhhchhhH
Q 024030           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYAL-RTLTAMVCEGSI  125 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~~~~~~~  125 (273)
                      +.+..+.+++.++..-...+..|+.+.+.||+|.|++.+.|.++..++.++..++++   .|.+++. -++.|+ +.++.
T Consensus        77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~-G~~~~  152 (509)
T KOG2504|consen   77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGL-GLGLI  152 (509)
T ss_pred             CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhc-cchhh
Confidence            334445788889999999999999999999999999999999999999999999998   7766654 566777 66777


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK  192 (273)
Q Consensus       126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      +......+..+++ ++|+.++|+...+.++|.++-|.+...+    |||..+++.+.+.+-.++......|
T Consensus       153 ~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  153 YLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             hcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7788888888776 7899999999999999988887777665    9999999888777555555344334

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.50  E-value=9.7e-13  Score=114.82  Aligned_cols=162  Identities=13%  Similarity=0.054  Sum_probs=111.8

Q ss_pred             HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh---c
Q 024030           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY---R  101 (273)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~  101 (273)
                      .....+.|.+.++.        +.+....++......++.+++.++.|+++||+|||+.+..+.++..++..++.+   .
T Consensus       301 ~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (481)
T TIGR00879       301 NAIMYYSPTIFENA--------GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGAS  372 (481)
T ss_pred             eehHHHHHHHHHHc--------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33445666665442        333345577777788888999999999999999999998887777776655542   1


Q ss_pred             cCch-----hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 024030          102 RSIS-----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA  172 (273)
Q Consensus       102 ~~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~  172 (273)
                      ....     ....+....+..+. ......+....++.|.+|+++|++++++.+...++|..++|.+.+.+    +|++.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~  451 (481)
T TIGR00879       373 FVTGSSKSSGNVAIVFILLFIAF-FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV  451 (481)
T ss_pred             ccCCcccchhHHHHHHHHHHHHH-HHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccce
Confidence            1110     12222222222222 22222356677889999999999999999999999999999887765    67888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC
Q 024030          173 FQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      |++.++++++..++..+..||++
T Consensus       452 f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       452 FIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             ehhHHHHHHHHHHHHheecccCC
Confidence            88888887777766566666654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.49  E-value=1.9e-11  Score=107.48  Aligned_cols=166  Identities=19%  Similarity=0.199  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      +.......++..+........+|.+.++..       +.+....|++.++..+|.++++.+.+++.+|+++++.+..+.+
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l-------~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~  292 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVL-------GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASL  292 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHH
Confidence            333333333444444555667898886643       4556677999999999999999999999999999999988998


Q ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 024030           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (273)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--  167 (273)
                      ..+++.+.+++.++   .+..++..++.|+ +.....+...+.+.+..|++.|||+++++.+....+..+|..+.|.+  
T Consensus       293 ~~a~~~~~lal~~~---~~~~~~~l~l~G~-~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  293 LFALALLLLALSPS---FWLALIALFLAGA-AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHhcchH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888887   7888888888887 55556678889999999999999999999988888888888877776  


Q ss_pred             --hhHHHHHHHHHHHHHHHHH
Q 024030          168 --STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       168 --~~~~~~~~~~~~~~~~~~~  186 (273)
                        +.+..+.+.++..++..++
T Consensus       369 ~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  369 HFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HhCHHHHHHHHHHHHHHHHHH
Confidence              5566666665554444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.49  E-value=7.7e-12  Score=108.70  Aligned_cols=175  Identities=17%  Similarity=0.217  Sum_probs=136.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc--hhh
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK--AML   84 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~   84 (273)
                      .|.+...++..++..-+...+......|.++.+       +.+..+...+..+..+..++++.++|++.||+|.|  +++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~l-------g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l  352 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVL-------GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL  352 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            456666677777777777888888888886543       55555666667777888999999999999999999  888


Q ss_pred             HHHHHHHHHHHHHHHh--------ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 024030           85 TLPLTLSIIPLAILAY--------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (273)
Q Consensus        85 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  156 (273)
                      +.+.+...+..+.-.+        ..+   .+.+.+..++.|+ ..|..++.+.++.+++.|+++.++.+|++.......
T Consensus       353 ~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~-~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s  428 (477)
T PF11700_consen  353 LISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGL-FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS  428 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            8777766443333222        334   6778888889998 667777999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030          157 FVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       157 ~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      ..+||++.+.+     +.|..+....++.++.+++ ...++.
T Consensus       429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l-l~~v~~  469 (477)
T PF11700_consen  429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL-LFFVDV  469 (477)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-Hhhccc
Confidence            99999999888     3577777777777766666 344444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.48  E-value=4.6e-12  Score=110.40  Aligned_cols=174  Identities=12%  Similarity=0.015  Sum_probs=108.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh--CCchhhH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLT   85 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~   85 (273)
                      +.++...+..++.....+....++|.|+++..       +.+....+.....+.++..++.++.|+++||+  |||+...
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~-------g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~  325 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK-------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  325 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence            33444555555555555667789999997632       34445667777788888899999999999999  4554322


Q ss_pred             -HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HHHHH
Q 024030           86 -LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV-CGTLA  163 (273)
Q Consensus        86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~gp~~  163 (273)
                       ....+..++...+......+ .+...+..++.|.+..+.. .....+..|.+|+++|++++|+.+....+|.. .+|.+
T Consensus       326 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v  403 (452)
T PRK11273        326 VFFMTLVTIATIVYWLNPAGN-PTVDMACMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI  403 (452)
T ss_pred             HHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHHHhHH-HHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence             22222223322222222211 3333344444444221212 23345678999999999999999888888765 47888


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHHH
Q 024030          164 ARFL----STTSAFQAATIVSMLAAAYMRVF  190 (273)
Q Consensus       164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~  190 (273)
                      .+.+    +|+..|.+.++.++++.+.....
T Consensus       404 ~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        404 VGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            7776    67888888877776665554433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.48  E-value=7.6e-12  Score=108.50  Aligned_cols=176  Identities=13%  Similarity=0.020  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh--CCchhh-HH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAML-TL   86 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~-~~   86 (273)
                      ++...+..+...........++|.|+++.       .+.+....+...+...++..++.++.|+++||+  ++|+.. ..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-------~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~  317 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSET-------LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLI  317 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHH
Confidence            34444444444555556667889998553       255556678888888999999999999999999  333332 22


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      ..+...+........+..+ ........+..|++..+.. ........|..|+++|++++|+.+....+|..++|.+.+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~  395 (434)
T PRK11663        318 FAAGILLSVGSLWLMPFAS-YVMQAACFFTIGFFVFGPQ-MLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAK  395 (434)
T ss_pred             HHHHHHHHHHHHHHccccc-HHHHHHHHHHHHHHHhhHH-HHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHH
Confidence            2222222222212122211 2233333344444221211 2334567899999999999999999999999999988887


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          167 L----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +    +|+..|...+++.++..+..++..++.
T Consensus       396 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        396 VLEIWHWTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6    678888888777766665545445443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.48  E-value=5.6e-12  Score=107.21  Aligned_cols=170  Identities=17%  Similarity=0.180  Sum_probs=115.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchh--hH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM--LT   85 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~--~~   85 (273)
                      +.++...+..++..........+.|.|+++..       +.+....+++.+...++..++.++.|+++||+|||+.  ..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  287 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQER-------GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF  287 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence            44555566666667777778888999986632       4455667888888899999999999999999999962  11


Q ss_pred             HHHHHHHH---HHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSII---PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (273)
Q Consensus        86 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~  162 (273)
                      ........   ...........+..+.......+.+. +.+ ..+...+++.|.+|+++|+++.|+.+...++|..++|.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~  365 (399)
T TIGR00893       288 ARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFF-GLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPI  365 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh-chh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhH
Confidence            11111111   11111111111113333333333333 444 55889999999999999999999999999999999999


Q ss_pred             HHHHh----h-hHHHHHHHHHHHHHHHHH
Q 024030          163 AARFL----S-TTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       163 ~~~~l----~-~~~~~~~~~~~~~~~~~~  186 (273)
                      +.+.+    + ++..+.+.+++.++..+.
T Consensus       366 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       366 VIGAIAATTGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             HhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence            99887    5 777887777766655544

>TIGR00897 2A0118 polyol permease family

Probab=99.48  E-value=1.1e-11  Score=106.53  Aligned_cols=171  Identities=8%  Similarity=-0.069  Sum_probs=115.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH-H
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-L   86 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~   86 (273)
                      |.++...+..++...+.+....+.|.|.++.        +.+..+.+.+.+...++..++.++.|+++||+|||+.+. .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~  293 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVAEL--------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWF  293 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence            3444445555555666677778899887552        444455677777888999999999999999999988764 3


Q ss_pred             HHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                      +.+...+....+...+  ..+..+.+.+..++.|+ +.+... ...+...|..| ++|+++.|+.+....+|..++|.++
T Consensus       294 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~  370 (402)
T TIGR00897       294 GGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGI-FLAGYV-PLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIA  370 (402)
T ss_pred             HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH-HHHHHH-HHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333322222111  11125566667777787 333343 34556677654 6899999999999999999999998


Q ss_pred             HHh----hhHHHHHHHHHHHHHHHHHHHH
Q 024030          165 RFL----STTSAFQAATIVSMLAAAYMRV  189 (273)
Q Consensus       165 ~~l----~~~~~~~~~~~~~~~~~~~~~~  189 (273)
                      +.+    ++...+++.++..++..++..+
T Consensus       371 g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       371 VLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            877    6778888887777666655433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.47  E-value=1.8e-12  Score=110.35  Aligned_cols=159  Identities=14%  Similarity=0.055  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      ++......+...........++|.|.++..       +.+....+.......++..++.++.|+++||+|||+.+..+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  293 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTL-------GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            444445555555666667788999986532       3444566777888889999999999999999999998775544


Q ss_pred             HHHHHH-HHH-HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024030           90 LSIIPL-AIL-AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF  166 (273)
Q Consensus        90 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~gp~~~~~  166 (273)
                      +..+.. ... ....+ .+.+......++.|+ +.+...+...+++.|.+|+++|+++.++. +....+|..++|.+++.
T Consensus       294 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~  371 (394)
T TIGR00883       294 LAALLAVPLLMALLDS-GSFTLFFFLVLGLAL-IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA  371 (394)
T ss_pred             HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence            333322 222 22211 125556666677776 45556688899999999999999999985 55667888899999988


Q ss_pred             h----h-hHHHHHHHH
Q 024030          167 L----S-TTSAFQAAT  177 (273)
Q Consensus       167 l----~-~~~~~~~~~  177 (273)
                      +    + |+..++...
T Consensus       372 l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       372 LVAMTGDWYAIGYYLA  387 (394)
T ss_pred             HHHHcCcchhHHHHHH
Confidence            7    3 555444443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11462 putative transporter; Provisional

Probab=99.45  E-value=2.8e-11  Score=105.54  Aligned_cols=141  Identities=12%  Similarity=-0.063  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchhhH-HHHH
Q 024030           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LPLT   89 (273)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~-~~~~   89 (273)
                      ++.+...........++..|+.|.       .++++..+|.+..+.-+--.+.-|+.|.++||    +||||..+ ++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~-------~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i   88 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDI-------FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL   88 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHh-------hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence            344444555666667788888664       37788899999999999999999999999996    68887766 5656


Q ss_pred             HHHHHHHHHHhccCc---hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030           90 LSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        90 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      ..+++..++...++.   .....+.+..++... +.........++.+|..+ +++|++..+.-..+..+|..+++.+
T Consensus        89 ~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~-~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~  165 (460)
T PRK11462         89 PFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL-LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL  165 (460)
T ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666555444421   113334445555555 445566788889999886 7899999999988888887666554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.43  E-value=2.5e-12  Score=108.85  Aligned_cols=180  Identities=13%  Similarity=0.086  Sum_probs=147.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhh
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML   84 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~   84 (273)
                      ..|.++.++..-+..-+++|.....+-.|+....+++   ++.+...+.-+.+.+.--.-+...++|+++||+ |+|+++
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g---Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG---LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc---CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            3567888888999999999999999999998876544   566666777777777777778889999999995 999999


Q ss_pred             HHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHHHHHH
Q 024030           85 TLPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCG  160 (273)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g  160 (273)
                      .+|.++..++.++++...  .   ...+++...+.++ +.|.+=+...+++.|..|++  +|..++++++.+.++|+.++
T Consensus        96 ~lGail~~iGh~~L~~~~~~~---~~gl~i~L~~I~i-G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~  171 (498)
T COG3104          96 VLGAILMAIGHLVLAISSVSG---PGGLYIGLALIIV-GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIA  171 (498)
T ss_pred             HHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHh-ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHH
Confidence            999999999999988774  4   5567777777777 77777789999999999865  47788899999999999999


Q ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       161 p~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      |.+.+++    +|+..|...++-....++. +...++
T Consensus       172 p~i~~~~~~~~g~~~gF~~aavGm~~gl~~-f~~~~r  207 (498)
T COG3104         172 PIITGLLAINYGWHVGFGLAAVGMIIGLVI-FLLGRR  207 (498)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHHHH-HHHccc
Confidence            9998887    7888888887776666665 444443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.43  E-value=1.3e-11  Score=108.30  Aligned_cols=142  Identities=13%  Similarity=0.080  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHH
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALA  131 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  131 (273)
                      ++......+..+++.++.|+++||+|||++++.+.++.+++.+++....  +.... ......++.+.+......+...+
T Consensus       309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  387 (479)
T PRK10077        309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLSMLFYVAAFAMSWGPVCWV  387 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHhccccchhHH
Confidence            3444556777889999999999999999999999888888776655332  21111 22223333333122223356789


Q ss_pred             HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          132 YVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       132 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      +++|.+|+++|+++.|+.+....+|..+++.+...          .+++..|++.+++.++..++.++..||+++
T Consensus       388 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        388 LLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             HhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence            99999999999999999999999888887544432          356677888777776666665566676543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.42  E-value=3.8e-11  Score=102.37  Aligned_cols=226  Identities=12%  Similarity=0.032  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchhhH-HH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LP   87 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~-~~   87 (273)
                      .....+...........++..|+.|.       .++++..+|.+..+.-+.-.+.-|+.|.++||    +||+|.++ .+
T Consensus        17 Yg~gd~~~~~~~~~~~~yLl~fYTdv-------~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g   89 (467)
T COG2211          17 YGLGDFASNFAFGIVVLYLLFFYTDV-------FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG   89 (467)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHhcc-------cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence            34455666677777788899998664       48889999999999999999999999999995    78877665 56


Q ss_pred             HHHHHHHHHHHHhccC---chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHH--
Q 024030           88 LTLSIIPLAILAYRRS---ISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGT--  161 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~gp--  161 (273)
                      .+..++...++...++   ..+....++...+.++ +....+.+..++.+++.+ ++||.+..+.-....++|..+..  
T Consensus        90 ~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l-~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~  168 (467)
T COG2211          90 AIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGL-GYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVL  168 (467)
T ss_pred             hHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHH-HHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777776666665553   2234556666777777 666666788888899875 68999999998888888855442  


Q ss_pred             --HHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccccccc
Q 024030          162 --LAARFL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (273)
Q Consensus       162 --~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (273)
                        ++...+       +|+..-.+.+++..+..+..++..+|+..+.++.                        ++  ..+
T Consensus       169 ~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~------------------------~~--~~~  222 (467)
T COG2211         169 FPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPT------------------------KT--GVK  222 (467)
T ss_pred             HHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccC------------------------cc--ccc
Confidence              233333       4455555555555555555455555554422221                        01  112


Q ss_pred             chHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       233 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      .++++.+...++||.++..++..++...+..-..+...+|
T Consensus       223 ~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy  262 (467)
T COG2211         223 LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYY  262 (467)
T ss_pred             ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhhee
Confidence            2556666678899999999998887776665555554444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.41  E-value=7.4e-11  Score=100.62  Aligned_cols=162  Identities=11%  Similarity=0.102  Sum_probs=118.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      |.++......++..........+.|.|.+|.        +.+....|.+.+...++..+..++.|++.||+|+|+.+..+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~  276 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQAA--------GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLS  276 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHHHC--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            3444444545555555555667778887542        44556678888888889999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARF  166 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~gp~~~~~  166 (273)
                      .+...+........++   .+.+++..++.|+ +.+...+....++.+. +++++++..+..+ ....+|..+||.++|.
T Consensus       277 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~  351 (382)
T PRK11128        277 AICGVVRWGLMGSTTA---LPWLIVIQILHCG-TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF  351 (382)
T ss_pred             HHHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777766666   7778888898998 5666667788888886 5667788888875 5567788999999998


Q ss_pred             hhhH---HHHHHHHHHHHH
Q 024030          167 LSTT---SAFQAATIVSML  182 (273)
Q Consensus       167 l~~~---~~~~~~~~~~~~  182 (273)
                      +-.+   ..++..+++.++
T Consensus       352 l~~~~g~~~~~~~~~~~~~  370 (382)
T PRK11128        352 LYQHLGAGVFWVMALVALP  370 (382)
T ss_pred             HHHhccHHHHHHHHHHHHH
Confidence            8322   344444444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.41  E-value=4.1e-11  Score=103.88  Aligned_cols=157  Identities=16%  Similarity=0.130  Sum_probs=95.8

Q ss_pred             HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH-
Q 024030           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA-   99 (273)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~-   99 (273)
                      ....+....++|.|+++..       +.+....+...+...+...+++++.|+++||+|||+.+..+.++..+...... 
T Consensus       256 ~~~~~~~~~~lp~~l~~~~-------g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~  328 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTA-------GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILS  328 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            4556667788999986632       33445566777777777788899999999999999987766554433322111 


Q ss_pred             -hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHh---h-hHHHH
Q 024030          100 -YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLAARFL---S-TTSAF  173 (273)
Q Consensus       100 -~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp~~~~~l---~-~~~~~  173 (273)
                       .....+ ....+....+.++ ..+...+....+.+|.+|++.|+++.|+.+...++ .....|.+.+.+   + |...+
T Consensus       329 ~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~  406 (432)
T PRK10406        329 ALQNVSS-PYAAFGLVMCALL-IVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFF  406 (432)
T ss_pred             HHHcCCc-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHH
Confidence             111111 2222222222222 22333355678889999999999999998766554 344577777766   3 34445


Q ss_pred             HHHHHHHHHHHHH
Q 024030          174 QAATIVSMLAAAY  186 (273)
Q Consensus       174 ~~~~~~~~~~~~~  186 (273)
                      +..++..++..+.
T Consensus       407 ~~~~~~~~i~~~~  419 (432)
T PRK10406        407 WYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHHHHHH
Confidence            5444444444444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.40  E-value=3.8e-11  Score=102.88  Aligned_cols=161  Identities=11%  Similarity=0.061  Sum_probs=118.5

Q ss_pred             HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (273)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  100 (273)
                      ...........|.|.++....    .+.+....|.+.+...+...++.+..|++.||+|||+.+.++..+.++...+...
T Consensus       228 ~~~~~~~~~~~~~y~~~~~~~----~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~  303 (396)
T TIGR00882       228 ACVYDVFDQQFANFFTSFFAT----PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF  303 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            333344445677787764321    1233345688888888888999999999999999999999888888887777666


Q ss_pred             ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 024030          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQA  175 (273)
Q Consensus       101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~gp~~~~~l----~~~~~~~~  175 (273)
                      .++   .+.+++..++.|+ +..........+..+..+++.+++..+. .+....+|..++|.++|++    |++.+|.+
T Consensus       304 ~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~  379 (396)
T TIGR00882       304 ATT---ALEVVILKMLHAF-EVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLV  379 (396)
T ss_pred             cCC---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence            666   6777788888887 4444444556677777887777776666 5778899999999988887    67888888


Q ss_pred             HHHHHHHHHHHHHH
Q 024030          176 ATIVSMLAAAYMRV  189 (273)
Q Consensus       176 ~~~~~~~~~~~~~~  189 (273)
                      .+++.++..++..+
T Consensus       380 ~~~~~~i~~~~~~~  393 (396)
T TIGR00882       380 LGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877766665443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.40  E-value=4.5e-11  Score=103.31  Aligned_cols=133  Identities=15%  Similarity=0.114  Sum_probs=94.0

Q ss_pred             hHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCch
Q 024030           26 MVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSIS  105 (273)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  105 (273)
                      .....+|.|+++.        +.+....+...+...++..++.++.|++.||+|||+.+..+.++..+........+...
T Consensus       249 ~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (426)
T PRK12307        249 PIFGLLPTYLAGE--------GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDN  320 (426)
T ss_pred             HHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            3556788887653        34445667778888999999999999999999999998888777666554444333211


Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024030          106 FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS  168 (273)
Q Consensus       106 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~  168 (273)
                       ...+....+..+++..+ ..+....++.|.+|+++|++++|+......+|..++|.+.+.+.
T Consensus       321 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        321 -YLLLGACLFGLMATNVG-VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             -HHHHHHHHHHHHHhccc-HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence             22221222222221122 22456678899999999999999999999999999999999884

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.40  E-value=3.5e-11  Score=101.45  Aligned_cols=150  Identities=17%  Similarity=0.221  Sum_probs=114.9

Q ss_pred             hhHHHHHHHHHHHHHHHhHH-HhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVV-PAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      .++......+.......... ...|.+.++.       .+.+..+.|.+.....++.+++.++.+++.||+|||+.+..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  283 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKY-------LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGA  283 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence            34444444444444444344 6778887653       244556778888889999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .....++.....+.++  +.+.+.+..++.|+ +.+...+...+++.|..|+++|+++.|+.+....++..++|.++|.+
T Consensus       284 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       284 IFVIGLAILVVGLTPP--NFPLFLVLWFAIGV-GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             HHHHHHHHHHHHhhch--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766666666655542  15677778888887 55666688899999999999999999999999999999999999876


Q ss_pred             h
Q 024030          168 S  168 (273)
Q Consensus       168 ~  168 (273)
                      .
T Consensus       361 ~  361 (365)
T TIGR00900       361 A  361 (365)
T ss_pred             H
Confidence            3

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.40  E-value=7.4e-11  Score=98.61  Aligned_cols=171  Identities=12%  Similarity=0.062  Sum_probs=130.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~   85 (273)
                      +++.++..+...++...+.+...+++..+++|..       +.+....+++...+.++.++++.+.|+++|| +.|+.+.
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~-------g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~  280 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA-------GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALI  280 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc-------CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHH
Confidence            3556777788888888899999999999987742       5666788999999999999999999999999 8888888


Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS--ERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      ....+.++....+.+..+.  .+..++..++.|+ ...   +..+.+..+..+  +|.+..+.++.....++|..+|..+
T Consensus       281 ~~~~l~a~~~l~l~~~~~~--~~~~~~~~~~wg~-a~~---~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~l  354 (394)
T COG2814         281 AALLLLALALLALTFTGAS--PALALALLFLWGF-AFS---PALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAAL  354 (394)
T ss_pred             HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHH-Hhh---hhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777777666655542  4555566666676 322   344444444433  5889999999999999999999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHHH
Q 024030          164 ARFL----STTSAFQAATIVSMLAAAYMRVF  190 (273)
Q Consensus       164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~  190 (273)
                      +|.+    ++....++.+++.++...+....
T Consensus       355 GG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         355 GGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            9887    66777777777777766664443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.39  E-value=2.1e-11  Score=104.43  Aligned_cols=135  Identities=14%  Similarity=0.116  Sum_probs=100.3

Q ss_pred             HHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH-HHHhcc
Q 024030           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA-ILAYRR  102 (273)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~~~~~~  102 (273)
                      ......++|.|+.+.       .+.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.....+... .....+
T Consensus       254 ~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  326 (405)
T TIGR00891       254 SHPIQDLLPTYLKAD-------LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA  326 (405)
T ss_pred             HhhhhhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC
Confidence            334556778887553       255566778888889999999999999999999999998877765533322 222323


Q ss_pred             CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024030          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST  169 (273)
Q Consensus       103 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~  169 (273)
                      +   .+.+.+..++.+++..+ ..+...+++.|.+|+++|++++|+.+...++|..++|.++|.+..
T Consensus       327 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       327 N---VAVLGLGLFFQQMLVQG-IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             c---hHHHHHHHHHHHHHHcc-chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   45555555555553333 336778899999999999999999999999999999999998843

>PRK15075 citrate-proton symporter; Provisional

Probab=99.39  E-value=5.2e-11  Score=103.31  Aligned_cols=140  Identities=16%  Similarity=0.202  Sum_probs=92.4

Q ss_pred             HHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH-H
Q 024030           19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA-I   97 (273)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~   97 (273)
                      ......+....+.|.|+++..       +.+..+.++......++..++.++.|+++||+|||+++..+.....+... .
T Consensus       249 ~~~~~~~~~~~~~p~~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~  321 (434)
T PRK15075        249 MTTVSFYLITVYTPTFGKTVL-------HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPA  321 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            344555667788999987632       33444567777788888999999999999999999988776544332221 1


Q ss_pred             HH-hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 024030           98 LA-YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG-VLSASFVCGTLAARFL  167 (273)
Q Consensus        98 ~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~gp~~~~~l  167 (273)
                      .. ...+ ..........++.++ +.+...+....+..|.+|++.|+++.++.+. ...++..++|.+.+++
T Consensus       322 ~~~~~~~-~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        322 LSWLVAA-PSFARMLAVELWLSF-LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             HHHHHcC-CchHHHHHHHHHHHH-HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            11 1121 113333333444444 3344445667889999999999999998644 4444577788888776

>TIGR00895 2A0115 benzoate transport

Probab=99.39  E-value=4.2e-11  Score=102.17  Aligned_cols=141  Identities=15%  Similarity=0.174  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHH
Q 024030           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP   94 (273)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~   94 (273)
                      ...++..........++|.+.++.        +.+....+...+...++..++.++.|+++||+|||+............
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       257 LLYFMLLVGVYFLTNWLPKLMVEL--------GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            334444455556666777554332        444556788888889999999999999999999995544444333333


Q ss_pred             HHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           95 LAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ..+.....+   .+...+..++.|+ +.+...+...+++.|.+|+++|+++.|+......+|..+||.++|.+
T Consensus       329 ~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       329 VLVGSTLFS---PTLLLLLGAIAGF-FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHhhC---HHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            333322344   5566677778887 55556688999999999999999999999999999999999998864

>TIGR00898 2A0119 cation transport protein

Probab=99.38  E-value=5.8e-11  Score=104.95  Aligned_cols=136  Identities=18%  Similarity=0.141  Sum_probs=100.0

Q ss_pred             HHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Q 024030           59 IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS  138 (273)
Q Consensus        59 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  138 (273)
                      ...+..+.+.++.+++.||+|||+.+..+.++.+++.++..+.++.. .+...+..++.++ +.+...+....+.+|.+|
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKF-GITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-HHHHHHHHHHHHhccccc
Confidence            34566677888899999999999999998888888777776665432 2333344444444 334444778889999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030          139 ERQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (273)
Q Consensus       139 ~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      ++.|++++|+.+....+|..++|.+.+..  ++..++.+.++..++..++ .+++||++++
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~  500 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGIL-TLFLPETKGV  500 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCCC
Confidence            99999999999999999999999998832  3456677766666665555 4567876543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.38  E-value=1.5e-10  Score=98.75  Aligned_cols=177  Identities=14%  Similarity=0.168  Sum_probs=131.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.+...++..++..........+.+.|++|..       +.+....|.+.++..++-+..-...+++..|+|.|+++.+
T Consensus       206 ~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g-------g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~  278 (400)
T PF03825_consen  206 NPRFLVFLLAAFLIGISHAAYYTFFSIYLQELG-------GYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLL  278 (400)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            344556666777777788888889999998752       1333455767777778888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHhc-cCchhHHHH----HHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYR-RSISFFYAY----YALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG-VLSASFVCG  160 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~g  160 (273)
                      +.+..++=..+++.. ++   .+..    .....+.|+ ..+........++.+..|++.|+++.++++. ..++|..+|
T Consensus       279 a~~~~~vR~~l~a~~~~~---~~~~~~~~~l~q~lhG~-tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG  354 (400)
T PF03825_consen  279 ALVAYAVRWLLYAYFSDP---WPFIVALQLLGQLLHGL-TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG  354 (400)
T ss_pred             HHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence            999999998888877 44   2222    233456887 6667778999999999999999999999865 578999999


Q ss_pred             HHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          161 TLAARFLS----------TTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       161 p~~~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      ..++|++-          |...+.+.+++.++..++.+...||+
T Consensus       355 ~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  355 SLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999882          22344455555555555545555554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.38  E-value=1.1e-10  Score=100.34  Aligned_cols=150  Identities=12%  Similarity=0.032  Sum_probs=101.4

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      .++.......+............|.++++..       +.+..+.|+......++..++.++.|+++||+|+|+.+..+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~  288 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGE-------QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGL  288 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3343333333333333444456677765532       344456677767677788899999999999999999988887


Q ss_pred             HHHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           89 TLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        89 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +...++..+....+  .....+++.+..++.|+ +.+...+......... ++++|++..+..+....+|..+|+.+++.
T Consensus       289 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~  366 (406)
T PRK15402        289 WPMVAGLLLAALATVISSHAYLWLTAGLSLYAF-GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKH  366 (406)
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77766666554432  11124556667777777 4454445555554443 45899999999999999999999999998


Q ss_pred             h
Q 024030          167 L  167 (273)
Q Consensus       167 l  167 (273)
                      +
T Consensus       367 l  367 (406)
T PRK15402        367 A  367 (406)
T ss_pred             c
Confidence            7

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.37  E-value=4.5e-11  Score=103.80  Aligned_cols=177  Identities=10%  Similarity=-0.017  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      ++...+..++.....+....++|.|+++..       +.+....++......++..++.++.|+++||+++++....+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  325 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVK-------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVF  325 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHcc-------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHH
Confidence            444444445555555667788999987632       4455667888888889999999999999999975443333332


Q ss_pred             HHH---HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH-HHHHHHHHH
Q 024030           90 LSI---IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS-FVCGTLAAR  165 (273)
Q Consensus        90 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~gp~~~~  165 (273)
                      ...   ++...+...+..+ .+......+..|++..+.. ........|.+|+++|+++.|+.+....+| ..+||.+.|
T Consensus       326 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G  403 (438)
T TIGR00712       326 FMTLVTIAVIVYWMNPAGN-PLVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  403 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHccHH-HHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH
Confidence            221   1212222222111 2333333344443222211 222346789999999999999998887776 467888887


Q ss_pred             Hh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          166 FL----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       166 ~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      .+    ++...+.+.+++.+++.+...+.+||.+
T Consensus       404 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       404 YTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            76    6778888877777777777677777654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.37  E-value=1.7e-11  Score=107.54  Aligned_cols=151  Identities=18%  Similarity=0.063  Sum_probs=96.9

Q ss_pred             HHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCch-------hhHHHHHHHHHHHH
Q 024030           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-------MLTLPLTLSIIPLA   96 (273)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~   96 (273)
                      ......++|.|+.+.       .+.+....+.+.+...++..++++++|+++||+|||+       .......+..+...
T Consensus       268 ~~~~~~~~p~~l~~~-------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~  340 (476)
T PLN00028        268 ELTMDNIIAEYFYDR-------FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCI  340 (476)
T ss_pred             HHHHHhHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH
Confidence            344556788887543       2555667788888999999999999999999998762       22222222222223


Q ss_pred             HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHH
Q 024030           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAF  173 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~---l~~~~~~  173 (273)
                      +....++   .+...+..++.++ +.+...+...++..+.. +++|+.+.|+.+...++|..++|.+.+.   .+|+..|
T Consensus       341 ~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f  415 (476)
T PLN00028        341 WLGRANS---LGAAIVVMILFSI-FVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGI  415 (476)
T ss_pred             Hhcccch---HHHHHHHHHHHHH-HHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHH
Confidence            3333333   3444444444454 22223344555666654 4789999999988888888888876542   2588888


Q ss_pred             HHHHHHHHHHHHH
Q 024030          174 QAATIVSMLAAAY  186 (273)
Q Consensus       174 ~~~~~~~~~~~~~  186 (273)
                      ++.+++.+++.++
T Consensus       416 ~~~~~~~~i~~~~  428 (476)
T PLN00028        416 SLMGVMIIACTLP  428 (476)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887777666555

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.37  E-value=1.2e-10  Score=101.28  Aligned_cols=197  Identities=15%  Similarity=0.122  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH-HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (273)
Q Consensus        50 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  128 (273)
                      ....++..++..+...+..|+.|.++|+-|+||.++... .+..++...+.+.+. +.++...+..++..+ +.+.....
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~-~~~~~~~~l~iia~v-~~~~~~vf  146 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSP-GQWWLALVLFIIANV-GYEASNVF  146 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHH
Confidence            345678888999999999999999999999888776544 444455555555433 223444444444444 44555578


Q ss_pred             HHHHHHhcCChhhH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHh------------hhH
Q 024030          129 ALAYVADNISERQR--------------------------ASAFGILLGVLSASFVCGTLAARFL------------STT  170 (273)
Q Consensus       129 ~~~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~gp~~~~~l------------~~~  170 (273)
                      .+++++|+.+++++                          ++..+.-.....+|+.+.-.+.-.+            +.|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            99999999998888                          8888888888888877765544332            237


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHH
Q 024030          171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ  250 (273)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  250 (273)
                      ..+.+.++..++..+...+.+||.++.++.++                     ..+......++.++.++..+|+|.+.+
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~---------------------~~~~~~~g~~~l~~t~k~~~~~~~~~~  285 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPS---------------------GSSYLRFGFKRLWRTFKEIRKLRQLFL  285 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCc---------------------chhHHHHHHHHHHHHHHHHHhChHHHH
Confidence            77778877777777766777777655322210                     001111222355566777889999999


Q ss_pred             HHHHHHHhccccccceeee
Q 024030          251 AAVVAFFSGLSEGGMQASF  269 (273)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~  269 (273)
                      .+++.+++.-+...+....
T Consensus       286 fLia~~l~~dg~~ti~~~~  304 (477)
T PF11700_consen  286 FLIAYFLYSDGVNTIISFA  304 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999886666554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.37  E-value=4.1e-11  Score=99.47  Aligned_cols=178  Identities=12%  Similarity=0.068  Sum_probs=133.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh--CCchh
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAM   83 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--grr~~   83 (273)
                      ++|.+|.+.+..++..+..+.+.-+.|.|+.|.       .+.+...+++..+.+-++.+.+++++|++|||+  |||.+
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-------k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p  322 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-------KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP  322 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-------cCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch
Confidence            356788888888888999999999999999773       256667788889999999999999999999996  67755


Q ss_pred             hH-HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHH
Q 024030           84 LT-LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGT  161 (273)
Q Consensus        84 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp  161 (273)
                      .- +..+...++...+...++. +.++..+..++.|+...|.. -.......|..|++.-|++.|+...+..+ |...+.
T Consensus       323 ~~~i~~~~i~~~~~~~w~~~~~-~~~l~~~~l~~iGf~IyGPq-mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~  400 (448)
T COG2271         323 MALIFMLLITASLVLYWLAPNG-SYLLDAILLFIIGFLIYGPQ-MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAG  400 (448)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHhhHH-HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcC
Confidence            44 4444455555555566653 35777778888887554544 35566778999999999999999998888 777776


Q ss_pred             HHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030          162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLK  192 (273)
Q Consensus       162 ~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      ...+++    ||...|.+..+..+++.++......
T Consensus       401 ~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         401 LPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             CcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            665555    8988888877766665554344433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.37  E-value=3.6e-11  Score=105.99  Aligned_cols=150  Identities=13%  Similarity=0.038  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      +.......+...........++|.|+++.       .+.++.+.|.......++..++.++.|++.||+|+|+.+..+.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-------~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~  333 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFV-------HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMA  333 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            33444444455555555667888888663       26667788999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      +..++...+......+..+......++.|+ +.+...+.....+.+..|+++++.+.++.+...++|..+|+.+.+.+
T Consensus       334 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        334 LSALSFYGLAMTDFSTQQWQAWGLMALLGF-SAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766655443322224555667788887 55666677888888999999999999999999999999999988876

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.37  E-value=1.4e-10  Score=102.05  Aligned_cols=167  Identities=13%  Similarity=0.085  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHH-HHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHH
Q 024030           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQA-IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (273)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~   95 (273)
                      .++...+........+.|+.+.       .+.+....|++.. ...++.+++.++.|+++||+|+|+.+..+.++..+..
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~~-------~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIRG-------VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3344444444555667776442       2556667787764 5567899999999999999999988776655544433


Q ss_pred             HHH---HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----h
Q 024030           96 AIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S  168 (273)
Q Consensus        96 ~~~---~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~  168 (273)
                      ..+   ....+  +.+.+....++..+ ..+...+...++..+..+++.+++..++.+...++|..+++.++|.+    |
T Consensus       304 l~~~~l~~~~~--~~~~l~~~~~l~~~-~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G  380 (491)
T PRK11010        304 AGYWLLSITDK--NLYSMGAAVFFENL-CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG  380 (491)
T ss_pred             HHHHHHHhccc--cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            322   22221  13444444455443 33444466788889999999999999999999999988777777766    7


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          169 TTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      |+..|.+.+++.+++.+... ..+++
T Consensus       381 ~~~~f~~~~~~~l~~l~~~~-~~~~~  405 (491)
T PRK11010        381 WPTFYLFSVAAAVPGLLLLL-VCRQT  405 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence            88888887777777665533 34443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.36  E-value=5.8e-11  Score=104.33  Aligned_cols=151  Identities=13%  Similarity=0.104  Sum_probs=116.0

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      .+....+..++.....+....++|.|+++..       +.+..+.|+......++..++.++.|++.||+|||+.+..+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~  328 (485)
T TIGR00711       256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVL-------GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGL  328 (485)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            3444455555556666667778899987642       455667788888899999999999999999999999998888


Q ss_pred             HHHHHHHHHHHh-ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           89 TLSIIPLAILAY-RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .+..++...+.+ .......+.+....++.|+ +.+...+.......+..|+++|+++.|+.+....+|..+|+.+.+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       329 ILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF-GMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI  407 (485)
T ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777766652 2222225556666777887 55555566677777889999999999999999999999999888876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.35  E-value=6.4e-11  Score=98.39  Aligned_cols=176  Identities=13%  Similarity=0.164  Sum_probs=133.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++++....+..++..-+...+...-..|..       ..++++..+..++.....+..+++.+++|++.||+|.|+++..
T Consensus       251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~-------~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~  323 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVNTILAMGGVFGA-------ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI  323 (438)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH
Confidence            345565666666666666666777777754       3447777888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +.++..+..+...+...   ...+.+...+.|. ..|..++.+.++..+.+|+++-++.+|+++.....+..+||++-+.
T Consensus       324 ~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~-s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v  399 (438)
T COG2270         324 GLVILSIAALYLIFLEG---ELDFWILGLLVGT-SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV  399 (438)
T ss_pred             HHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence            98888777666555555   3445556666776 5566669999999999999999999999999999999999999888


Q ss_pred             h-----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          167 L-----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       167 l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +     +.|..+....++..+.+++ ....|++
T Consensus       400 ~t~iTg~~r~g~~~i~vll~iGl~~-L~~v~~~  431 (438)
T COG2270         400 ITQITGSSRAGVLSIIVLLLIGLLL-LLRVKVP  431 (438)
T ss_pred             HHHHhcchhhHHHHHHHHHHhhHhh-EEeecCC
Confidence            7     3465565555555555444 4444543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.35  E-value=9.4e-11  Score=95.51  Aligned_cols=202  Identities=14%  Similarity=0.131  Sum_probs=151.5

Q ss_pred             HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc
Q 024030           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (273)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  104 (273)
                      ..+.|.++...        ++.+.+...+|++.+...++..+.+|+..+++.|+|.++.+..+.++..++..+=... + 
T Consensus        29 tsvgPLL~~Ir--------~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~-   98 (395)
T COG2807          29 TSVGPLLDEIR--------QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G-   98 (395)
T ss_pred             hhhhhhHHHHH--------HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c-
Confidence            44556666664        4458888999999999999999999999999999999999999999988887776554 4 


Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH----HHHHh-hhHHHHHHHHHH
Q 024030          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL----AARFL-STTSAFQAATIV  179 (273)
Q Consensus       105 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~----~~~~l-~~~~~~~~~~~~  179 (273)
                        .+.++....+.|. +-+..+...++.+-+.+| ++-+..+|++....++|..+++.    +.... +||....+-+..
T Consensus        99 --~~~L~~gt~l~G~-gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~  174 (395)
T COG2807          99 --LPLLFLGTLLAGA-GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALL  174 (395)
T ss_pred             --HHHHHHHHHHHHh-hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHH
Confidence              6778888888887 667888899999999998 56789999999888887766644    44444 799888887777


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhc
Q 024030          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (273)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  259 (273)
                      +++++++   ++|...+++...                         ...+..+..     .++|||.-|.+.+.+-+.+
T Consensus       175 allAl~~---WlPq~~r~~~~~-------------------------~~~~~~~~~-----~vw~~~~aW~vtLfmGlqS  221 (395)
T COG2807         175 ALLALLI---WLPQALREQAAS-------------------------IATKLVSVR-----KVWRSPLAWQVTLFMGLQS  221 (395)
T ss_pred             HHHHHHH---Hhhhcccccccc-------------------------ccccccccc-----ccccCchhHHHHHHHHhhH
Confidence            7766655   234421111110                         000100011     1678899999999999999


Q ss_pred             cccccceeeeeccC
Q 024030          260 LSEGGMQASFLVYI  273 (273)
Q Consensus       260 ~~~~~~~~~~~~yl  273 (273)
                      +.++....|+|.++
T Consensus       222 ~~~Y~~~~WLP~il  235 (395)
T COG2807         222 LLYYIVIGWLPAIL  235 (395)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988763

>PRK10054 putative transporter; Provisional

Probab=99.34  E-value=1e-10  Score=100.15  Aligned_cols=151  Identities=11%  Similarity=0.059  Sum_probs=107.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      |.++......++............+.|..+.     .+.+.+....|.+.....+.....+++.|++.||.++|+.+..+
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~  280 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVV-----ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAG  280 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHh-----cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHH
Confidence            3444444444444444444445666665442     12245556678888888888888889999999999999998888


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .....++...+.+..+  +.+.+.+..++.|+ +.+...+...+.+.+..|++.|+++.+..+ ...+|..+||.++|.+
T Consensus       281 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l  356 (395)
T PRK10054        281 TLCFVIGLVGFIFSGN--SLLLWGMSAAVFTV-GEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVI  356 (395)
T ss_pred             HHHHHHHHHHHHHcch--HHHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHH
Confidence            8777777666655422  15556667778887 555655788889999999999999988654 5668999999999988

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.34  E-value=4.1e-11  Score=97.68  Aligned_cols=147  Identities=16%  Similarity=0.077  Sum_probs=117.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhch
Q 024030           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (273)
Q Consensus        43 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  122 (273)
                      +..++.+..+..++......+..+++..+|..+|++|||+.+....+...+...+-..+++   +.++++.|.+.|++.+
T Consensus       105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~g~g  181 (528)
T KOG0253|consen  105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGFGVG  181 (528)
T ss_pred             HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhccCC
Confidence            3345677777888888889999999999999999999999999999999888888889999   8899999999998544


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA----RFLSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      | . |...++-.|..|..+|..-+-.. ..+.+|.++...++    ...||||...... ..+..+....++.||+++
T Consensus       182 g-~-pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~-~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  182 G-L-PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSS-TPLMFAARFLVWVYESPR  255 (528)
T ss_pred             C-c-cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-hHHHHHHHHHhhcccCcc
Confidence            4 4 88899999999998888766666 77788877775554    4449998777766 333344444778899876

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.33  E-value=2.4e-10  Score=97.77  Aligned_cols=166  Identities=11%  Similarity=0.005  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH-HHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      ++......++...+......+.+.|++|.        +.+..+.|++.....+ ...++.++.|++.||+|+|+.+..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--------G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVDA--------GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHhc--------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44444455555555666667788887663        5566777887777654 56677889999999999999988776


Q ss_pred             HHHHHHHHHHHh-cc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           89 TLSIIPLAILAY-RR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        89 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                      ....+....... ..  .....+.+.....+.++ ..+...+...+...+..++ +++++.+++.+...++|..+||.++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~  360 (390)
T TIGR02718       282 GLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL-ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA  360 (390)
T ss_pred             HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            655332222211 11  00112333334444444 3455556777777777765 8899999999999999999999999


Q ss_pred             HHh----hhHHHHHHHHHHHHHHH
Q 024030          165 RFL----STTSAFQAATIVSMLAA  184 (273)
Q Consensus       165 ~~l----~~~~~~~~~~~~~~~~~  184 (273)
                      |.+    |++..|...+++.+++.
T Consensus       361 G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       361 GYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHH
Confidence            887    55667776665555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.33  E-value=8.4e-11  Score=113.67  Aligned_cols=147  Identities=12%  Similarity=0.043  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHH-HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIY-LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      ++...+..++...........+|.|+.+..       +.+.. ..|++.+...++.++++++.|+++||+++|+.+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~  306 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVL-------GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA  306 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence            333344444444455556677888886643       34444 6788889999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ++.+++.+++.+..+   .+.+++..++.|+ +.+...+...+++.+..|++.|++++|+.++...+|..+++.+++.+
T Consensus       307 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        307 LGLALSLFLLPTAPS---LASVLVLFFLFGF-SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             HHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            877777777766665   6777777888887 55666678889999999999999999999999999998888777765

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.33  E-value=2.6e-10  Score=97.30  Aligned_cols=152  Identities=13%  Similarity=0.089  Sum_probs=98.3

Q ss_pred             HHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh-c
Q 024030           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY-R  101 (273)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~  101 (273)
                      +......+++.+.++.       .+.+....++..+...++..++.++.|++.||+|+|+.+..+..+..++..+... .
T Consensus       214 ~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~  286 (382)
T PRK10091        214 GVFAWFSYIKPYMMFI-------SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG  286 (382)
T ss_pred             HHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3333344556565442       2555667888889999999999999999999999999988887777776655443 3


Q ss_pred             cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHH
Q 024030          102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAA  176 (273)
Q Consensus       102 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~  176 (273)
                      ++   .+...+..++.+++..+...+.......+..+++.++.+.  .+....+|..+||.++|.+     +++..+.+.
T Consensus       287 ~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~  361 (382)
T PRK10091        287 GM---KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPA  361 (382)
T ss_pred             hh---HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHH
Confidence            33   3444444444444222333233333445555555555543  4567789999999999886     467777777


Q ss_pred             HHHHHHHHHH
Q 024030          177 TIVSMLAAAY  186 (273)
Q Consensus       177 ~~~~~~~~~~  186 (273)
                      ++..++....
T Consensus       362 ~~~~~~~~~~  371 (382)
T PRK10091        362 ALLSFAAMSS  371 (382)
T ss_pred             HHHHHHHHHH
Confidence            6665544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.32  E-value=6e-11  Score=98.43  Aligned_cols=177  Identities=15%  Similarity=0.043  Sum_probs=129.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +++.|.+.+..+...-++-.....+|.|++++.       +.+...+|...+.+.+...+..+.+|+++||+|.+|++..
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f-------g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~  289 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF-------GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA  289 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence            566777777777777777778889999997754       5556667788888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCc----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~  162 (273)
                      ....++++..+.....+.    .+.+..+...+..++ ..|.-+.....+++..+|+ +-|.+.|+.....++|+..-|.
T Consensus       290 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~-~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~  367 (417)
T COG2223         290 VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV-FAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPL  367 (417)
T ss_pred             HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHH-HhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhH
Confidence            888888887776655311    113333333333333 3333345667788888874 7789999999999999888777


Q ss_pred             HHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030          163 AARFL-----STTSAFQAATIVSMLAAAYMRVFLK  192 (273)
Q Consensus       163 ~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      .-+..     .+...|++...+.+++.++.+....
T Consensus       368 ~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         368 AFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655     4678888888888777776555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.32  E-value=5.1e-11  Score=105.24  Aligned_cols=137  Identities=16%  Similarity=0.155  Sum_probs=89.4

Q ss_pred             HHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC
Q 024030           59 IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (273)
Q Consensus        59 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  137 (273)
                      +..++.+++.++.++++||+|||++++.+..+..++..+..+..+. .....+....+...+++.+. .+....+.+|.+
T Consensus       343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~  421 (502)
T TIGR00887       343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGP-NATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC-CchhhhhhhccC
Confidence            3445666788889999999999999888877666655544432110 00111111111111111122 245677889999


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------------hHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024030          138 SERQRASAFGILLGVLSASFVCGTLAARFL-S-------------TTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (273)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      |++.|+++.|+.+....+|.+++|.+.+.+ .             ....|.+.++..++..+. .+++||++.+
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~  494 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGK  494 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCC
Confidence            999999999999999999999999887765 2             134667776666665554 4667887653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.32  E-value=1.2e-10  Score=101.03  Aligned_cols=149  Identities=15%  Similarity=0.166  Sum_probs=106.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      |.++......++...+........+.|.++..       + +....+.+.+...++.+++.+++++++||+|+|+++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~  293 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVL-------G-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGG  293 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeec-------C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            34444555555555555554444555543322       1 123446666777899999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC-------hhhHHHHHHHHHHHHHHHHHHH
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-------ERQRASAFGILLGVLSASFVCG  160 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g  160 (273)
                      ..+.+++.....+.++  ..+.+.+..++.|+ +.+...+...++++|..|       ++.+|.+.|+.+....+|..++
T Consensus       294 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg  370 (437)
T TIGR00792       294 ILLMVLGYLIFFFAGS--NLPLILVLIILAGF-GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA  370 (437)
T ss_pred             HHHHHHHHHHHHHcch--hHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence            8887777766655432  14556666677776 555666788889888865       4567999999999999999999


Q ss_pred             HHHHHHh
Q 024030          161 TLAARFL  167 (273)
Q Consensus       161 p~~~~~l  167 (273)
                      +.+.+.+
T Consensus       371 ~~i~g~l  377 (437)
T TIGR00792       371 GFLVGLI  377 (437)
T ss_pred             HHHHHHH
Confidence            9888876

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.30  E-value=3.6e-10  Score=97.50  Aligned_cols=180  Identities=31%  Similarity=0.473  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHhhcCCCCc-chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLD-ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (273)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~   92 (273)
                      ....++..+..++..+..........|.... ....+....+.......+..++.++..|.++||+|||..+........
T Consensus        24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~  103 (463)
T KOG2816|consen   24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTI  103 (463)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHH
Confidence            3444555555555554333333222221111 112222223333334477889999999999999999999998888887


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhh-hchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 024030           93 IPLAILAYRRSISFFYAYYALRTLTAM-VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----  167 (273)
                      +......+..    +|.+.    +.++ |+.+.......++++|....++|....|+.+.....+..++|.+++.+    
T Consensus       104 l~~~~~~~~~----~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~  175 (463)
T KOG2816|consen  104 LPALCLLFQG----YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL  175 (463)
T ss_pred             HhHHHHHHHH----HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            7766665543    23332    2222 334455678899999999999999999999999999999999999887    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 024030          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD  201 (273)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (273)
                      +.-.+|.+..+..++..+...+++||+..+++++
T Consensus       176 ~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  176 GIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             CchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            5567788888888888888788899987766653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.29  E-value=5.8e-10  Score=96.13  Aligned_cols=177  Identities=12%  Similarity=0.026  Sum_probs=112.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++..|.+.+..++...++.....++|.|.++...    +  .+   .........+...+..|++|+++||+|+|+++.+
T Consensus       251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~----~--~~---~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~  321 (462)
T PRK15034        251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP----D--VN---ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI  321 (462)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----h--HH---HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence            3455666666665555555566688888876421    1  11   1112233467788999999999999999999998


Q ss_pred             HHHHHHHHHHH-HHhccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh---------------------hhH
Q 024030           87 PLTLSIIPLAI-LAYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE---------------------RQR  142 (273)
Q Consensus        87 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---------------------~~r  142 (273)
                      +.+...+.... +...+.  ..+++...+..+...+ ..|.-+....-++++.+|+                     ++-
T Consensus       322 ~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~-~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (462)
T PRK15034        322 NFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFL-TAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTET  400 (462)
T ss_pred             HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHH
Confidence            88766665533 222322  1224544444433333 3444455667777777764                     156


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030          143 ASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       143 ~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      |.+.|+.+....+|+.+-|.+-+..     ++...|+...+..+++..+.+...-+
T Consensus       401 g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        401 AAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6778888888888888888665544     35667888777777777776665543

>TIGR00788 fbt folate/biopterin transporter

Probab=99.28  E-value=5.1e-10  Score=97.87  Aligned_cols=171  Identities=16%  Similarity=0.130  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhC-----CchhhH
Q 024030           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLT   85 (273)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~   85 (273)
                      .......+..++. +.....++.++++       +++.+..+.+...+...+...+ .+++|.++||++     ||+.++
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~-------~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~   99 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTD-------DLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLV   99 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHH-------hcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHH
Confidence            3344455666666 5555566666644       3366777787778888888766 555999999997     666666


Q ss_pred             HHHHHHH-HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHH---HHHHHHHHHHHHHH
Q 024030           86 LPLTLSI-IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFG---ILLGVLSASFVCGT  161 (273)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~g~~~gp  161 (273)
                      ++.++.. +....+...++  ......+..++.++ +.+....+..++..|..+ +++....+   ......++|..+|+
T Consensus       100 ~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~l~~~-~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~  175 (468)
T TIGR00788       100 LSGLLGSAILYGLLPGKVS--SAKVAAAFIFLAAL-AKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISS  175 (468)
T ss_pred             HHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHH
Confidence            6665552 33222322222  23333446777777 566667899999999998 55444333   33334457888888


Q ss_pred             HHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       162 ~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      .++|.+    +|+..|++.+++.++..+ ...++||++
T Consensus       176 ~l~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~  212 (468)
T TIGR00788       176 LLGGPLLDKTLTRILFLITAALLLLQLF-VSNLSKERR  212 (468)
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHH-HHHhccccc
Confidence            888775    789999888877776633 356677754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.28  E-value=5.5e-10  Score=94.65  Aligned_cols=170  Identities=17%  Similarity=0.094  Sum_probs=105.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc---hhh
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK---AML   84 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr---~~~   84 (273)
                      +.++......++.....+....++|.|+++. +       .+.. .+.......+...++   .++++||.+||   +..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~-g-------~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~  259 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRPA-G-------LEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIY  259 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-------CChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHH
Confidence            4566666677777777888888999999663 1       1111 244444444444444   46777776543   332


Q ss_pred             HH-HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030           85 TL-PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        85 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      .. ..+..++.........+   .+.......+.++ ......+..+++.+|.+|++.|+++.|+.+...++|+..+|.+
T Consensus       260 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~  335 (368)
T TIGR00903       260 IRAAALLIAAFFLALAFELN---RLALFAFIGIAGL-LMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALA  335 (368)
T ss_pred             HHHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHH
Confidence            32 33333333333343333   2333334444554 3333446678899999999999999999999999999888887


Q ss_pred             HHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          164 ARFL--STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       164 ~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      .+.+  +.+..|.+.++..++..+.+ ...+++
T Consensus       336 ~~~~~~~~~~~f~~~~~~~~i~~~~~-~~~~~~  367 (368)
T TIGR00903       336 AMLFISSAEAYFTFLAILITIAFAIA-LLLPND  367 (368)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence            7654  55677777766666655553 333443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.28  E-value=2.2e-10  Score=110.75  Aligned_cols=149  Identities=15%  Similarity=0.034  Sum_probs=114.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      +.++...+..+...+.......++|.|+++..       +.+....|++.+...++.++++++.|+++|+.++++.+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~  297 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETL-------GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIG  297 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-------CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHH
Confidence            34555555555555555667778999987643       45567789999999999999999999999988887776666


Q ss_pred             HHHHHHHHHHHHhc--------------------cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHH
Q 024030           88 LTLSIIPLAILAYR--------------------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFG  147 (273)
Q Consensus        88 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  147 (273)
                      .++..+..+.+.+.                    .+   .|.+++..++.|+ +.+...+...+++.+.+|++.||+++|
T Consensus       298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~G~v~g  373 (1140)
T PRK06814        298 ALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH---GWRILIDLFGLAA-AGGLYIVPLFAALQAWANPAHRARVIA  373 (1140)
T ss_pred             HHHHHHHHHHHHhcccccccccccccchhhhhcccc---cHHHHHHHHHHHH-HHHHhHHHHHHHHHhhCCcccceeeeH
Confidence            55555444433332                    33   5667777888887 566666889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 024030          148 ILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       148 ~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ..++...+|..+++.+++.+
T Consensus       374 ~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        374 ANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888777

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.27  E-value=7.1e-10  Score=94.97  Aligned_cols=149  Identities=12%  Similarity=0.044  Sum_probs=105.0

Q ss_pred             HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc
Q 024030           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (273)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  104 (273)
                      ......+|.++++..       +.+..+.|++.+...++.+++++..+++.||.++|+.+..+... .+....+.+.++ 
T Consensus       222 ~~~~~~~~~~~~~~l-------g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-  292 (393)
T PRK11195        222 ATLRFLVLAWAPVAL-------GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHS-  292 (393)
T ss_pred             HHHHHHHHHHHHHHc-------CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhH-
Confidence            344456666765532       55566789999999999999999999999999999887777533 333333444444 


Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Q 024030          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-RASAFGILLGVLSASFVCGTLAARFL---STTSAFQAATIVS  180 (273)
Q Consensus       105 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~gp~~~~~l---~~~~~~~~~~~~~  180 (273)
                        .+...+..++.|+ +.+...+...+.+.+..|++. +|++.++.+...+++..++..+.+.+   +-+..+.+.++..
T Consensus       293 --~~~~~~~~~~~G~-~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (393)
T PRK11195        293 --LLPAYPLLILIGA-LGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGL  369 (393)
T ss_pred             --HHHHHHHHHHHHH-hhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence              5656667777887 556666778888888766654 79999999999999999998887766   3345555544433


Q ss_pred             HHHHH
Q 024030          181 MLAAA  185 (273)
Q Consensus       181 ~~~~~  185 (273)
                      ++.+.
T Consensus       370 ~~~~~  374 (393)
T PRK11195        370 LVALA  374 (393)
T ss_pred             HHHHH
Confidence            33333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.27  E-value=2.4e-10  Score=98.47  Aligned_cols=160  Identities=13%  Similarity=0.017  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh-HHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML-TLPL   88 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~   88 (273)
                      ++......++.....+....++|.++++.      ..+.+....+.......++..++.++.|+++||+++|+.. ....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~------~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~  317 (412)
T TIGR02332       244 IMLYTLAYFCLTNTLSAINIWTPQILQSF------NQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY  317 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence            33344445555566677888999999762      1133445678888888999999999999999999987753 3333


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024030           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (273)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-  167 (273)
                      +...++..+.....+   .........+.+++. ....+.......|.+|+++|++++|+.+...++|..++|.+.+.+ 
T Consensus       318 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~  393 (412)
T TIGR02332       318 LFAAAGWLLASATDH---NLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK  393 (412)
T ss_pred             HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence            333333322222222   122121122222211 112233445556788999999999999999999999999888776 


Q ss_pred             ----hhHHHHHHHHHH
Q 024030          168 ----STTSAFQAATIV  179 (273)
Q Consensus       168 ----~~~~~~~~~~~~  179 (273)
                          +|+..+.+.+++
T Consensus       394 ~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       394 DATGSFNSGLWFVAAL  409 (412)
T ss_pred             ccCCCCchhHHHHHHH
Confidence                367777665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.27  E-value=6.4e-10  Score=95.75  Aligned_cols=171  Identities=15%  Similarity=0.096  Sum_probs=114.5

Q ss_pred             HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH
Q 024030           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (273)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~   99 (273)
                      ...+.+.+..+-..++++.        +.+...+-++.....+...+.++++..+.||+|||++++.+..+..+..+++.
T Consensus       282 q~sGi~ai~~Yst~i~~~a--------G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~  353 (485)
T KOG0569|consen  282 QFSGINAIFFYSTSIFKTA--------GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMS  353 (485)
T ss_pred             HhcCcceeHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444432        44445556666677888899999999999999999999999888887776655


Q ss_pred             hc---cCch--hHH-HHHHHHHHHhhh-chhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH----HHHHHHhh
Q 024030          100 YR---RSIS--FFY-AYYALRTLTAMV-CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFLS  168 (273)
Q Consensus       100 ~~---~~~~--~~~-~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g----p~~~~~l~  168 (273)
                      ..   .+..  +.+ ..+++.++..+. ..|. .|..+-+.+|++|++.|+.+++.......+..++-    |.+-..+|
T Consensus       354 ~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~-gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g  432 (485)
T KOG0569|consen  354 IALFLSNSFGSWLSYLCIAAIFLFIISFAIGP-GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG  432 (485)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCC-CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            32   1111  111 122333333321 2233 37888899999999999999999888777765443    55555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (273)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (273)
                      - ..|..+.+.+++..+..++.+||++.+...
T Consensus       433 ~-~~filF~i~~~~~~i~~~~~lPETkgr~~~  463 (485)
T KOG0569|consen  433 P-YVFILFVIPLAIFLIYLYRYLPETKGRTPY  463 (485)
T ss_pred             c-hhhHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence            5 667777777777888888999999765543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.26  E-value=3.3e-10  Score=97.20  Aligned_cols=129  Identities=14%  Similarity=0.058  Sum_probs=94.3

Q ss_pred             HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchhhHHHHHHHHHHHHHHHhccCch
Q 024030           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSIS  105 (273)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~  105 (273)
                      ...++|.|.++...        +....|++.+...++...+..+.+++.|| ++.|+.+..+.....++..++...++  
T Consensus       227 ~~~~~p~~~~~~~~--------~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~--  296 (400)
T PRK11646        227 VMLMLPIMVNDIAG--------SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN--  296 (400)
T ss_pred             HHHhhhhhHHhhcC--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh--
Confidence            34577888776421        22345666666666666555556666654 66666677777777777766666666  


Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030          106 FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       106 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                       .+.+.+..++.++ +.+...+...+++.|..|+++|++++|+.+....+|..+||.++|.+
T Consensus       297 -~~~~~~~~~l~~~-g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        297 -LQQLFTLICLFYI-GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             -HHHHHHHHHHHHH-HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence             5556666666776 44556678889999999999999999999999999999999999988

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.25  E-value=5.1e-09  Score=88.54  Aligned_cols=181  Identities=12%  Similarity=0.066  Sum_probs=137.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      |++|.+.+........+.......|.|..+..    ++.+.+....|.+.+..-+.-.+...+..++.+|+|.|+.++++
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f----~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla  295 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF----QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence            44554444333333344555556777776642    23366667889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF  166 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~gp~~~~~  166 (273)
                      ..+..+=...+++.++   .+.+.+.+.+-++ -.+.......-++++.+|++..++...+. +...++|..+.+.++|.
T Consensus       296 g~i~~iRi~~~~~~~~---~~~i~~~klLH~~-e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~  371 (412)
T PF01306_consen  296 GVIMAIRIIGSGFATN---PWVISLIKLLHAL-EFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY  371 (412)
T ss_dssp             HHHHHHHHHHHHT--S---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            9999999999999999   8999999999997 66666678888999999999888888875 67888888888888888


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       167 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      +    |.+.+|++.+.+.++..++..+.++++++
T Consensus       372 lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  372 LYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             hHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            7    66778888888777777776777765444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.25  E-value=7.5e-10  Score=87.44  Aligned_cols=149  Identities=17%  Similarity=0.198  Sum_probs=114.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~   85 (273)
                      .++.+|.+...+++......-....-|.+.++.       ++.|+..+|.+.+.....+.+.+|+.|.++||+|++...+
T Consensus       262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-------fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv  334 (459)
T KOG4686|consen  262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-------FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWV  334 (459)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-------hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhH
Confidence            356778888887777777666667777777664       4677777788888888888999999999999999998777


Q ss_pred             HHH-HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPL-TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        86 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                      .+. +....+.....+..     +.-+....+.|+ .........+..++.+.|+++.|++.|..+...++|..+-|+++
T Consensus       335 ~~a~~~tl~~H~~l~Ft~-----lsPy~~m~~lGL-sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iia  408 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFTF-----LSPYTSMTFLGL-SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIA  408 (459)
T ss_pred             HHHHHHHHHHhhhHHhhh-----ccHHHHHHHHhh-hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhh
Confidence            554 44445544444432     233455666777 55555455788999999999999999999999999999999999


Q ss_pred             HHh
Q 024030          165 RFL  167 (273)
Q Consensus       165 ~~l  167 (273)
                      +.+
T Consensus       409 g~i  411 (459)
T KOG4686|consen  409 GFI  411 (459)
T ss_pred             hee
Confidence            988

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.24  E-value=9.6e-13  Score=115.88  Aligned_cols=229  Identities=17%  Similarity=0.235  Sum_probs=2.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhcc--------------------
Q 024030           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR--------------------  102 (273)
Q Consensus        43 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--------------------  102 (273)
                      +..++++..+.|++.+.+-++.++..++..++.+|.+|-|.+-+|.++.+++.+++++-+                    
T Consensus        30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~  109 (539)
T PF03137_consen   30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI  109 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence            556789999999999999999999999999999998777788888888888877765310                    


Q ss_pred             ------------------------C---chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 024030          103 ------------------------S---ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA  155 (273)
Q Consensus       103 ------------------------~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  155 (273)
                                              +   ...++.++++.++.|+ ++...++...+|+-|.+++++-+...|+..+...+
T Consensus       110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi-G~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l  188 (539)
T PF03137_consen  110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI-GATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL  188 (539)
T ss_dssp             ------------------------------------------SS-S----------------------------------
T ss_pred             ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc-cccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence                                    0   0024667788999998 66667799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCCCC
Q 024030          156 SFVCGTLAARFL--------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD-DLTRPII  208 (273)
Q Consensus       156 g~~~gp~~~~~l--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  208 (273)
                      |..+|-++++..                          .||..|.+.+++.++..+. .+.+|+..++..+. ++.+...
T Consensus       189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip-l~~FPk~lp~~~~~~~~~~~~~  267 (539)
T PF03137_consen  189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP-LFFFPKKLPGTSERQEEKESSE  267 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHcCCccCCCcccccchhhhhh
Confidence            988887777653                          2566677777766665555 44556544333111 1100000


Q ss_pred             CCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          209 TEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      ...+.......++++..+...+..+++.+.++.+.+||.+....+...+..+...++.++.|-|+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKyl  332 (539)
T PF03137_consen  268 RKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYL  332 (539)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             cchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000000000111111111222334555566688999999999999999999999999999885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK09848 glucuronide transporter; Provisional

Probab=99.24  E-value=6.1e-10  Score=97.01  Aligned_cols=152  Identities=11%  Similarity=0.089  Sum_probs=108.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.+....+..++...+........|.|.++..       +.+....++......++.+++.++.+++.||+|+|+.+..
T Consensus       227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~  299 (448)
T PRK09848        227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYVL-------NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI  299 (448)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhheeeEeeec-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            344555555555556665566666666665532       3333344444444567788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhh-------HHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-------RASAFGILLGVLSASFVC  159 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~g~~~  159 (273)
                      +.++.+++...+.+.+. .+.+.+.+..++.|+ +.+...+...+..+|..|.++       +|...|+.+....+|..+
T Consensus       300 g~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai  377 (448)
T PRK09848        300 GALLGTCGYLLFFWVSV-WSLPVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI  377 (448)
T ss_pred             HHHHHHHHHHHHHHcCc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence            98887777766665442 225666666777787 566666888999999887543       588899999999999999


Q ss_pred             HHHHHHHh
Q 024030          160 GTLAARFL  167 (273)
Q Consensus       160 gp~~~~~l  167 (273)
                      |+.+.+.+
T Consensus       378 g~~i~g~~  385 (448)
T PRK09848        378 GGSIPAFI  385 (448)
T ss_pred             HHHHHHHH
Confidence            98887765

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.24  E-value=2.8e-09  Score=91.35  Aligned_cols=162  Identities=10%  Similarity=0.099  Sum_probs=105.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhH-HHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAI-TDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +.++......+....+......++ |.+.++.        +.+....|.+.....++..++.++.|++.||.+ |+.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~  286 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLA--------GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAG  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHH
Confidence            334443333333334443444454 5554332        455566788888889999999999999999964 444443


Q ss_pred             HHHH-HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTL-SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus        87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                      +... ......+....++   .+.+.+..++.|+ +.+...+...+++.+..| ++++++.+......++|..+||.++|
T Consensus       287 ~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G  361 (394)
T PRK10213        287 APLVLAVSALVLTLWGSD---KIVATGVAIIWGL-TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGG  361 (394)
T ss_pred             HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333 3333333334444   5667777888887 556666788888888887 55667788888888999999999999


Q ss_pred             Hh----hhHHHHHHHHHHHHHH
Q 024030          166 FL----STTSAFQAATIVSMLA  183 (273)
Q Consensus       166 ~l----~~~~~~~~~~~~~~~~  183 (273)
                      .+    +.+..+...+++..+.
T Consensus       362 ~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        362 YALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHhccChhhHHHHHHHHHHHH
Confidence            88    4556666655544333

>TIGR00896 CynX cyanate transporter

Probab=99.24  E-value=1e-09  Score=92.56  Aligned_cols=146  Identities=14%  Similarity=0.079  Sum_probs=103.2

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhhHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLP   87 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~   87 (273)
                      .++...+..++.....+....++|.|+++.        +.+....|.+.+...++.++++++.|++.||+ +||+.+..+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--------g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~  269 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLYYSLIGWLPAILISH--------GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVL  269 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Confidence            344334444444555666677889998653        44556778888999999999999999999999 456666677


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      ..+..++...+.+.++.   +.. ...++.|+ +.+...+...+.+.+.. ++++++...++.+....++..++|.+.|.
T Consensus       270 ~~~~~~~~~~~~~~~~~---~~~-~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~  344 (355)
T TIGR00896       270 AVLQLVGLCGLLFAPMH---GLW-AWALVLGL-GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV  344 (355)
T ss_pred             HHHHHHHHHHHHHhhhh---HHH-HHHHHHHH-hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666555442   211 13456677 55555567667666544 46778899999888888999999999988


Q ss_pred             h
Q 024030          167 L  167 (273)
Q Consensus       167 l  167 (273)
                      +
T Consensus       345 l  345 (355)
T TIGR00896       345 L  345 (355)
T ss_pred             H
Confidence            7

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.23  E-value=3.3e-10  Score=95.09  Aligned_cols=141  Identities=18%  Similarity=0.189  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHH-HHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLA-IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~   91 (273)
                      .....+...........++|.|+++.       .+.+ ....+...+...+...++.++.|+++||+|+|+.........
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEV-------LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLL  283 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHH-------HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            44444455556666888899986442       3445 577888889999999999999999999999988877777766


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp  161 (273)
                      .+....+.......+....+...++.|+ +.+...+...+++.|..|+++|+++.|+.+...++|..+||
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  284 ILGALGLLLLPFSSSPVWLIIALFLIGF-GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHCCSHHHCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            6666555544332224556667777887 66777789999999999999999999999999999999997

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.23  E-value=2.5e-09  Score=91.83  Aligned_cols=134  Identities=16%  Similarity=0.114  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHH-HHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHH---HhccCchhHHHHHHHHHH----Hh
Q 024030           47 SLAIYLSGFQQAIIG-LGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL---AYRRSISFFYAYYALRTL----TA  118 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l----~g  118 (273)
                      +.+....|++..... ++..++.++.|++.||+|+|+.+..+.....+....+   ...++  ..+.+.+..++    .|
T Consensus       241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g  318 (402)
T PRK11902        241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK--HLWTMALAIGIENLCGG  318 (402)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHH
Confidence            555667787776544 4578899999999999999998877666655544333   23322  14444444433    33


Q ss_pred             hhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHH
Q 024030          119 MVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYM  187 (273)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~----l~~~~~~~~~~~~~~~~~~~~  187 (273)
                      + ..+...+....++.+.+|.++++.    .+...+++...++.++|.    .||+..|.+.++++++..++.
T Consensus       319 ~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        319 M-GTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             H-HHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            3 334444666667777777665543    433444554434444544    488888888887777766553

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.21  E-value=1.4e-09  Score=95.28  Aligned_cols=167  Identities=14%  Similarity=0.026  Sum_probs=106.4

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhh----
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML----   84 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~----   84 (273)
                      .++...+..+....+.+....++|.|+++..       +.+....|+..+...++..++.++.|+++||.++|+..    
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~-------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~  334 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVL-------RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTA  334 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            4555666666677777777889999987643       45556778888888999999999999999998765322    


Q ss_pred             ----HHHHHHHHHHHHH--HHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 024030           85 ----TLPLTLSIIPLAI--LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV  158 (273)
Q Consensus        85 ----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  158 (273)
                          ..+......+...  ...... + .+..++...+.+. ..+...+.......|..| +.+|.+.++.+....+|..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~  410 (465)
T TIGR00894       335 ARKIFNGIGGLGPGIFAYALPYLSA-A-FYLTIIILTLANA-VSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGL  410 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC-c-hHHHHHHHHHHHH-HhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHH
Confidence                1111111111111  112111 1 3333333333333 333333444455567666 5899999999999999999


Q ss_pred             HHHHHHHHh-------hhHHHHHHHHHHHHHHHHH
Q 024030          159 CGTLAARFL-------STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       159 ~gp~~~~~l-------~~~~~~~~~~~~~~~~~~~  186 (273)
                      ++|.+.+.+       +|+..|.+.++..++..+.
T Consensus       411 i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~  445 (465)
T TIGR00894       411 IASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF  445 (465)
T ss_pred             HHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999988875       2667777776666665544

>TIGR00901 2A0125 AmpG-related permease

Probab=99.20  E-value=7.1e-10  Score=93.60  Aligned_cols=136  Identities=13%  Similarity=0.097  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH-HHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIG-LGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      ++...+..++.....+.....+|.|+++ .       +.+..+.|.+..+.. ++.+++.+++|++.||+|||+.+..+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  282 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-M-------GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFG  282 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-------CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3444444445556666777889999866 2       445566677666555 567889999999999999999988888


Q ss_pred             HHHHHHHHHHHhc-cCc-------hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 024030           89 TLSIIPLAILAYR-RSI-------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLS  154 (273)
Q Consensus        89 ~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  154 (273)
                      ++..+...++.+. .+.       +..+.+....++.++ +.+..++...+++.|.+|+++|++.+|+.++..+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       283 IVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAV-TGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            7777665554432 111       225667777778787 6677779999999999999999999999887654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.20  E-value=7.7e-10  Score=93.68  Aligned_cols=150  Identities=13%  Similarity=0.020  Sum_probs=99.1

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      .++...+..+...........+.|.|+++..       +.+....+...+...++..++.++.|+++||.++|+......
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~  289 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEK-------GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAV  289 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHH
Confidence            3444455555556666667778888886532       445567788888889999999999999999864433222221


Q ss_pred             ---HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           89 ---TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                         ....++.......+..+ .+...+..++.|+...+ ..+....+..|..|+++|+++.|+.+....+|..++|.+.|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  367 (379)
T TIGR00881       290 FFMALIIVSLLVYWLNPAAN-PLMDLICLFALGFLVYG-PQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG  367 (379)
T ss_pred             HHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHHHhh-hhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHH
Confidence               11222222222211211 34444555566652323 33456678899999999999999999999999999999888


Q ss_pred             Hh
Q 024030          166 FL  167 (273)
Q Consensus       166 ~l  167 (273)
                      .+
T Consensus       368 ~l  369 (379)
T TIGR00881       368 YL  369 (379)
T ss_pred             HH
Confidence            77

>TIGR01272 gluP glucose/galactose transporter

Probab=99.19  E-value=4.4e-09  Score=87.06  Aligned_cols=148  Identities=11%  Similarity=0.008  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      .++...+..++..........+.+.|+.|.     ...+.+....+...+.+..+..++++..+++.||+|+|+.+.++.
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~-----~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~  215 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDP-----HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA  215 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            344444455554445667778899998652     223566778888999999999999999999999999999888887


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024030           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS  168 (273)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~  168 (273)
                      .+..++..+....++   .... ....+.|+ +.+..+|...+...+..|++ .+++.++. ....+|..++|.+.|.+.
T Consensus       216 ~l~~~~~~l~~~~~~---~~~~-~~~~l~g~-~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       216 FLAVLLSIGAALTHG---YVAM-WFVLALGL-FNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             HHHHHHHHHHHHcCC---HHHH-HHHHHHHH-HHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence            777776655555443   2222 23446676 55566688888888887753 45666765 566789999999888773

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.19  E-value=5.4e-09  Score=87.12  Aligned_cols=200  Identities=16%  Similarity=0.105  Sum_probs=126.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhC-----CchhhHHH-HHHHHHHHHHHH-----hcc------CchhH
Q 024030           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLTLP-LTLSIIPLAILA-----YRR------SISFF  107 (273)
Q Consensus        45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~~-~~~~~~~~~~~~-----~~~------~~~~~  107 (273)
                      +++......+...+...+.. ..++.+|..||+.+     ||..+++. .+....+..+..     ...      .....
T Consensus         9 EL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~   87 (403)
T PF03209_consen    9 ELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL   87 (403)
T ss_pred             HhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence            34666677777777766664 46999999999999     89877754 444444333332     122      01222


Q ss_pred             H--HHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-h---h-H--HHHHHHHH
Q 024030          108 Y--AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-S---T-T--SAFQAATI  178 (273)
Q Consensus       108 ~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-~---~-~--~~~~~~~~  178 (273)
                      +  ...+...+.|+ +.+...+...++++|..|+|+|+++.++.....-+|.+++..+.+.+ .   . |  ..+...++
T Consensus        88 g~~~a~l~F~l~G~-G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~  166 (403)
T PF03209_consen   88 GLALAALAFLLYGL-GVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVAL  166 (403)
T ss_pred             HHHHHHHHHHHHHh-hHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHH
Confidence            3  23345566777 55555678899999999999999999999999999999999888876 1   1 1  12222222


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHh
Q 024030          179 VSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFS  258 (273)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  258 (273)
                      +.++..++ ..+-.|++..+..                         +...++.+++++.++.++++|+-+++.+..++.
T Consensus       167 i~~~l~~i-a~wg~E~r~~~~~-------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~  220 (403)
T PF03209_consen  167 IALLLNLI-ALWGQEPRRSRRA-------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLG  220 (403)
T ss_pred             HHHHHHHH-HHHhcccCCcccc-------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHH
Confidence            22222222 2222333222221                         011122236667777788999999999999888


Q ss_pred             ccccccceeeeecc
Q 024030          259 GLSEGGMQASFLVY  272 (273)
Q Consensus       259 ~~~~~~~~~~~~~y  272 (273)
                      .+++...+..+-+|
T Consensus       221 t~a~~~QD~iLEPy  234 (403)
T PF03209_consen  221 TLAFFMQDVILEPY  234 (403)
T ss_pred             HHHHHhhHHHcCCc
Confidence            88877766555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.18  E-value=6.9e-10  Score=97.26  Aligned_cols=172  Identities=18%  Similarity=0.268  Sum_probs=138.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC--chhhH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR--KAMLT   85 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~~~   85 (273)
                      +.++...+...+..+++.....++|.|..+.        +.+....+.+.++..+...++.+..|.++|+...  +.+..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~--------g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~  369 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSL--------GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL  369 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence            4566666777777888888888899987643        5556677888999999999999999999999984  34555


Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                      ++.+..+++.....+.++   ++.++..-++.|+ ..|.+.......+.|..+.++-..+.|+.....+++..+||.++|
T Consensus       370 ~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~-~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag  445 (509)
T KOG2504|consen  370 LTLLIAGLARLFLPFATT---YVGLIVFSILFGF-CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG  445 (509)
T ss_pred             HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence            677777777777778888   8889999999998 667675666678999999999999999999999999999999999


Q ss_pred             Hh-----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030          166 FL-----STTSAFQAATIVSMLAAAYMRVFLK  192 (273)
Q Consensus       166 ~l-----~~~~~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      ++     +|...|+.+++..+++... ++..+
T Consensus       446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~-~~~~~  476 (509)
T KOG2504|consen  446 LLYDITGNYDHAFYFCGLCFLLSAVL-LLILR  476 (509)
T ss_pred             eeeeccCCeeeehhhcChHHHHHHHH-HHHhH
Confidence            77     4677888888877766655 33344

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.16  E-value=4.3e-09  Score=89.58  Aligned_cols=146  Identities=12%  Similarity=0.106  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~   89 (273)
                      ++...+................|.++++..       +.+....|.+.+...++..++.++.|++.||+|+|+.+..+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~  280 (385)
T TIGR00710       208 FWGYALIYGASFGGFFAFFSGAPFVYIDIM-------GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLI  280 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcChHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            333333333334444455566677775432       4455667888888899999999999999999999999888877


Q ss_pred             HHHHHHHHHHhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHHHHH
Q 024030           90 LSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLAA  164 (273)
Q Consensus        90 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp~~~  164 (273)
                      ...++..++....  .....+.+....++.|+ +.+...+.......|..| ++|+++.++.+..... |...+|.++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       281 LFAVSAVLLEITAILGLGSWAMIIGPMMFVGI-GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666655554322  11113444555666676 445555777778888876 6789999998776654 555556555

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.16  E-value=3.9e-10  Score=93.81  Aligned_cols=216  Identities=13%  Similarity=0.071  Sum_probs=145.0

Q ss_pred             HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH-HHHHHHHHHHHHHHhccC
Q 024030           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-LPLTLSIIPLAILAYRRS  103 (273)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~~~  103 (273)
                      .....+.|.|+++..+.+..+-..+....|...++..+...+.+|+.|.++|+.|+||... ....+.+++...+.+.++
T Consensus        32 ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~  111 (438)
T COG2270          32 IVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP  111 (438)
T ss_pred             eeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence            3445678888888655543344455567799999999999999999999999999887766 444555556666666666


Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH--HHh--------------
Q 024030          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA--RFL--------------  167 (273)
Q Consensus       104 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~--~~l--------------  167 (273)
                      ...++..++..++..+ +....+...++++.+..++++-++..++-.....+|+.+.-+..  ...              
T Consensus       112 ~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l  190 (438)
T COG2270         112 GSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGL  190 (438)
T ss_pred             CchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeecc
Confidence            3335566666677776 44455578999999999998888887777666666655543321  111              


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHH
Q 024030          168 ------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (273)
Q Consensus       168 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (273)
                            .-|.++.+.++..++..+..++..|+.++...+                       ..+......++.++.++.
T Consensus       191 ~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~-----------------------~~~~l~~g~k~L~~t~k~  247 (438)
T COG2270         191 PPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSP-----------------------PPTALRNGFKELKSTFKE  247 (438)
T ss_pred             CccccccchhHHHHHHHHHHHHHhHHHhccccccccccc-----------------------chHHHHHHHHHHHHHHHH
Confidence                  236777787777777666655555554432211                       111222233455667777


Q ss_pred             HhhcchhHHHHHHHHHhcccccc
Q 024030          242 LRSSVTLSQAAVVAFFSGLSEGG  264 (273)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~  264 (273)
                      .++++.+.+++++.+++.=+..+
T Consensus       248 i~~~~~i~~FLiA~~~~~DGv~t  270 (438)
T COG2270         248 IRGRKNLVLFLIARFFYIDGVNT  270 (438)
T ss_pred             HhcccchHHHHHHHHHHHhhHHH
Confidence            88999999999999988655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.15  E-value=1e-08  Score=87.78  Aligned_cols=139  Identities=12%  Similarity=-0.104  Sum_probs=83.3

Q ss_pred             HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchh
Q 024030           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF  106 (273)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  106 (273)
                      .....|.+.++..       +.+....|.+.+...++..++.++.|++.||+|||+.+..+.....++...+.+.++   
T Consensus       222 ~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---  291 (392)
T PRK10473        222 FVNTSPVLLMEQM-------GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS---  291 (392)
T ss_pred             HHHhCHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3445566665432       444556788888889999999999999999999999999888887777776666554   


Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024030          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQR-ASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATI  178 (273)
Q Consensus       107 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~gp~~~~~l~~~~~~~~~~~  178 (273)
                      .+.......+.+. +.+..  .......+..|.++| +.+.++......+|..+++.+.+.+++.......+.
T Consensus       292 ~~~~~~~~~l~~~-g~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        292 HAVSLFGITLICA-GFSVG--FGVAMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHHHHHHHHHHH-HHHHH--hHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            3333333333232 11111  122333444454433 444555555555666666666666666543444333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.14  E-value=9e-10  Score=96.63  Aligned_cols=150  Identities=13%  Similarity=0.118  Sum_probs=100.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      |.+..+....++............+.|.+...+        +....+.+.+...++.+++.+++++++||+|+|+.+..+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~--------~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~  302 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG--------DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGA  302 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            445555555555556666555555544433211        122345666666788899999999999999999999888


Q ss_pred             HHHHHHHHHHHHh---ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh-------hhHHHHHHHHHHHHHHHH
Q 024030           88 LTLSIIPLAILAY---RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-------RQRASAFGILLGVLSASF  157 (273)
Q Consensus        88 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~  157 (273)
                      ..+.+++.+....   ... ...+.+++..++.|+ +.+...+...++++|..+.       +..|..+|.......+|.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~g~-~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~  380 (473)
T PRK10429        303 SIFPVLSCGVLLLMGLAAP-HNALLIVIAGILLNI-GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGS  380 (473)
T ss_pred             HHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHH
Confidence            7766655544432   222 225556666677776 5566668889999999763       334457888888899999


Q ss_pred             HHHHHHHHHh
Q 024030          158 VCGTLAARFL  167 (273)
Q Consensus       158 ~~gp~~~~~l  167 (273)
                      .+|+.+.|.+
T Consensus       381 al~~~i~g~~  390 (473)
T PRK10429        381 AFAAFFIGVV  390 (473)
T ss_pred             HHHHHHHHHH
Confidence            9998887765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.14  E-value=7.3e-09  Score=88.06  Aligned_cols=147  Identities=15%  Similarity=0.041  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (273)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~   90 (273)
                      +...+..++...+........|.+..+.       .+.+..+.|.+.+...++..++.++.|++.||+|||+.+..+...
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~  269 (377)
T PRK11102        197 LGYMLASGFSFAGMFSFLTAGPFVYIEL-------NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWI  269 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            3333334444444455555666666543       245566778888999999999999999999999999998887765


Q ss_pred             HHHHHHHHHhcc-CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 024030           91 SIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAARF  166 (273)
Q Consensus        91 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~gp~~~~~  166 (273)
                      ..+......... .....+...+...+.+. ..+...+.....+.|..| ++++++.++.+.. ..+|..+++.+++.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        270 QFIMGIWLVVSALLDLGFWALVVGVAAFVG-CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            444332222111 11113433333333332 233333455566777666 7899999987553 45677777776543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.13  E-value=3.2e-10  Score=100.93  Aligned_cols=220  Identities=15%  Similarity=0.211  Sum_probs=160.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc--------------------c--
Q 024030           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--------------------R--  102 (273)
Q Consensus        45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--------------------~--  102 (273)
                      .+.++....|++.+.+-++..+...+..+...|..|-+.+-+|.++++++.+++++-                    +  
T Consensus       126 RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~  205 (735)
T KOG3626|consen  126 RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSS  205 (735)
T ss_pred             hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcc
Confidence            345666668999999999999999999999999999999999999998888877641                    0  


Q ss_pred             -------------------------Cch--hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 024030          103 -------------------------SIS--FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA  155 (273)
Q Consensus       103 -------------------------~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  155 (273)
                                               ..+  .+..++++.++.|+ +....++...+|+-|...+++-....|+..+...+
T Consensus       206 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI-G~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~l  284 (735)
T KOG3626|consen  206 SLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI-GATPIFTLGISYIDDNVKKKNSPLYLGILYSMAIL  284 (735)
T ss_pred             ccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc-CCCCCccCCCccccccccccCCcHHHHHHHHHHHh
Confidence                                     000  23356778999998 66666789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 024030          156 SFVCGTLAARFL-----------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEET  212 (273)
Q Consensus       156 g~~~gp~~~~~l-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (273)
                      |.++|-++++.+                       .||..|.+.+.+.++..+. ++++|+..++.+++.+.       +
T Consensus       285 GPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p-~f~fPk~lp~~~~~~~~-------~  356 (735)
T KOG3626|consen  285 GPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP-LFFFPKELPKSQKRKRA-------R  356 (735)
T ss_pred             hhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH-HHhCcccCccccccchh-------h
Confidence            999998888775                       3677788888877777666 56677665544332000       0


Q ss_pred             cccccCCCC--CCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          213 EGVNQNESN--SPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       213 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      +.....+++  .+......+..+.+...++.+.+||.+...++...+....+.++.+++|-||
T Consensus       357 ~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyL  419 (735)
T KOG3626|consen  357 DLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYL  419 (735)
T ss_pred             hhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHH
Confidence            000000000  1111122222335556677788999999999999999999999999999885

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.11  E-value=5.9e-09  Score=90.32  Aligned_cols=151  Identities=17%  Similarity=0.180  Sum_probs=118.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.+.......++..++........+.|.++.++.+        ...+.+.....++.+++.+++++++||+|+|+.+..
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~--------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE--------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            456666777777777888877778888877754333        234566667889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh-------hHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER-------QRASAFGILLGVLSASFVC  159 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~  159 (273)
                      +.++.+++.++..+.+. ++.+.+++..++.|+ +.+..++...++++|..+.+       +.|...|..+....++..+
T Consensus       296 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~gi-~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~l  373 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGP-GSPWLVLILFILAGI-GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGL  373 (428)
T ss_pred             hHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhHh-hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHH
Confidence            99999998888877762 117888888899998 55666689999999998743       3577888888888999988


Q ss_pred             HHHHHHHh
Q 024030          160 GTLAARFL  167 (273)
Q Consensus       160 gp~~~~~l  167 (273)
                      ++.+.+.+
T Consensus       374 a~~i~g~~  381 (428)
T PF13347_consen  374 AGAIVGLL  381 (428)
T ss_pred             HHHHHHHH
Confidence            88877655

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.11  E-value=1.7e-08  Score=88.47  Aligned_cols=176  Identities=15%  Similarity=0.166  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-----chhh--H
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-----KAML--T   85 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-----r~~~--~   85 (273)
                      +++...+....+.-..+.++.+.++.++......+.   ..+++.+.+.+..++.+|+..++..|.+|     +...  .
T Consensus       277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~i---p~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSV---PVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEE---CHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            344444445555556667888876643222111222   25778888888888888886654444443     3333  5


Q ss_pred             HHHHHHHHHHHHHHhc----c--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAYR----R--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (273)
                      +|.++.+++.....+.    +  ...+.|++.+..++.++ +.....|...+++.+..|++.|++.+|+......+|..+
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~-ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l  432 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL-GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL  432 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777766665531    1  11237888899999998 778888999999999999999999999999999999999


Q ss_pred             HHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030          160 GTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK  192 (273)
Q Consensus       160 gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      ++.+....    +|...|...+++.++..++.++..|
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       433 GGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            98887765    5666666666666555555444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10133 L-fucose transporter; Provisional

Probab=99.08  E-value=2.3e-08  Score=86.91  Aligned_cols=144  Identities=8%  Similarity=-0.075  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (273)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~   90 (273)
                      +...+..++..........+.+.|+.+      +..+.++...|+....+.++..+++++.|++.||+|+|+++..+..+
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~------~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~  334 (438)
T PRK10133        261 RWAVLAQFCYVGAQTACWSYLIRYAVE------EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI  334 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh------hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            333344444444444455567777422      12367778889999999999999999999999999999998888777


Q ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ..+...+..+.++   .+ .+....+.|+ +.+...|...+...+..|+ +.+.+.++... ..+|..++|.+.|.+
T Consensus       335 ~~~~~~~~~~~~~---~~-~~~~~~l~gl-g~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l  404 (438)
T PRK10133        335 AMALCLISAFAGG---HV-GLIALTLCSA-FMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFV  404 (438)
T ss_pred             HHHHHHHHHHcCC---hH-HHHHHHHHHH-HHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHH
Confidence            6666555555444   22 2344566777 5666779999999998875 45677777754 446777787777776

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.08  E-value=2.3e-08  Score=85.63  Aligned_cols=149  Identities=11%  Similarity=0.026  Sum_probs=96.3

Q ss_pred             HHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH-HHHHHHHHHHh
Q 024030           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT-LSIIPLAILAY  100 (273)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~-~~~~~~~~~~~  100 (273)
                      .+........|.+.++..       +.+....|++.....++..+++++.+++.||++++........ ...+.......
T Consensus       221 ~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (394)
T PRK11652        221 AGIAVFEACSGVLMGAVL-------GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGW  293 (394)
T ss_pred             HHHHHHHHhChHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445566665532       4445567888888888899999999999999984332222221 11111111111


Q ss_pred             ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024030          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVS  180 (273)
Q Consensus       101 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~~~~~~~~~~  180 (273)
                      ... ...+.+....++.|+ +.+...+...++..|..| ++++++.++.+....+|..+++.+++.+..+..+....+..
T Consensus       294 ~~~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~  370 (394)
T PRK11652        294 FGV-MNVWTLLVPAALFFF-GAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGLLMT  370 (394)
T ss_pred             hcc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            111 114556666777776 556666888888888887 57899999999999999999999999885544444443333

>PRK11043 putative transporter; Provisional

Probab=99.07  E-value=3.5e-08  Score=84.66  Aligned_cols=136  Identities=12%  Similarity=0.029  Sum_probs=89.9

Q ss_pred             HHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHH---H
Q 024030           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL---A   99 (273)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~   99 (273)
                      .........|.+.++.        +.+....|+......++..++....+++.||+|+|+..........++...+   .
T Consensus       218 ~~~~~~~~~p~~~~~~--------g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  289 (401)
T PRK11043        218 AFFAWLTGSPFILEQM--------GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLAS  289 (401)
T ss_pred             HHHHHHHHhHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455677776542        4445566777777788888999999999999999987655554444433222   2


Q ss_pred             hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024030          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST  169 (273)
Q Consensus       100 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~  169 (273)
                      .....+ .+..++...+.|+ +.+...+...+...|..| ++|+++.|+.+.....+...++.+.+.+.+
T Consensus       290 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        290 LLSHPS-LVPLLIPFCVMAA-ANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HhccCc-HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            211111 4444455556665 445555777777777766 579999999998888788888877777643

>PRK09669 putative symporter YagG; Provisional

Probab=99.07  E-value=9.1e-09  Score=89.58  Aligned_cols=112  Identities=13%  Similarity=0.126  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  133 (273)
                      +.+.....+..+++.+++++++||+|+|+.+..+.+...+......+.+. +..+.+++..++.|+ +.+...+...+++
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~g~-~~~~~~~~~~am~  344 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP-SNVWLIFALNILFNF-IQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            44555667778888999999999999999998887665544333333222 225666777778887 5566668999999


Q ss_pred             HhcCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030          134 ADNISER-------QRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       134 ~~~~~~~-------~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      +|..+.+       ..|...|..+....+|..+||.+++.+
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988632       234567888888899999999888775

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.07  E-value=2e-08  Score=88.34  Aligned_cols=144  Identities=15%  Similarity=0.170  Sum_probs=101.3

Q ss_pred             HHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchh-------hHHHHHHHH
Q 024030           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM-------LTLPLTLSI   92 (273)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~-------~~~~~~~~~   92 (273)
                      ....+......++.+.++.....  ..+... ..+.+.+.+.+..++.+|+.+++.||.|+|+.       +.+|.++.+
T Consensus       281 f~~~~~q~~~~l~l~~~~~~~~~--~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~  357 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNVHHE--ILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCS  357 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhcccc--ccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence            33444444467778877543221  112111 22445556667778899999999999999974       667777666


Q ss_pred             HHHHHH-----Hhcc--CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           93 IPLAIL-----AYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus        93 ~~~~~~-----~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                      ++....     ....  ...+.|++....++.|+ +.+...+...+++.+..|++.++.++|+.....++|..+|..+++
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~-Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~  436 (489)
T PRK10207        358 LGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL-GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT  436 (489)
T ss_pred             HHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665432     1221  12236777788888998 888888999999999999999999999999999999999988775


Q ss_pred             Hh
Q 024030          166 FL  167 (273)
Q Consensus       166 ~l  167 (273)
                      ..
T Consensus       437 ~~  438 (489)
T PRK10207        437 FT  438 (489)
T ss_pred             Hh
Confidence            44

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.04  E-value=4.4e-09  Score=89.90  Aligned_cols=162  Identities=16%  Similarity=0.163  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~   92 (273)
                      +++...+...+...+..++=.+++|..        ......|........+-++.-++.+++.+|+|+-+++..++.+..
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHled~~--------~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~  447 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLEDLG--------GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNV  447 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcC--------CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHH
Confidence            344555566677777888888887752        223344666666677778888899999999999999999999999


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHh----
Q 024030           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARFL----  167 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~gp~~~~~l----  167 (273)
                      .-.+.+....+   .|..+...+++|+ ..+..+.+..+|+++..||+.|+++.++. ....++|-.+|.++||.+    
T Consensus       448 ~Rf~~~S~L~n---~W~vLPieilqgi-t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  448 GRFLYYSYLQN---PWMVLPIEILQGI-THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             HHHHHHHHhcC---chheeeHHHHHHH-HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence            99999999999   8999999999998 77888899999999999999999999988 446677888888888876    


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 024030          168 STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~  186 (273)
                      +-+..|.++++.+++.+++
T Consensus       524 g~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  524 GARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            6688888888777666554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.00  E-value=2.4e-08  Score=83.88  Aligned_cols=194  Identities=14%  Similarity=-0.001  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc---hhHH--HHHHHHHHHhhhchh
Q 024030           49 AIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI---SFFY--AYYALRTLTAMVCEG  123 (273)
Q Consensus        49 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~l~g~~~~~  123 (273)
                      +...+-|...++.+.++...+.+-++.|++|-|....++.....++..+-..+...   +.++  ....+..+.+. ...
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~-Aq~  155 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA-AQP  155 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH-hhh
Confidence            44556777888999999999999999999999999999999999988776654433   2244  56666767665 444


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHH--HHHHHHHHHHHHHHHHHHHh
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----------STTS--AFQAATIVSMLAAAYMRVFL  191 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----------~~~~--~~~~~~~~~~~~~~~~~~~~  191 (273)
                      .......-...-|+++++|+.+..+-..++.+|..+|.++...+          .|..  .|+...++.++.+.+..+..
T Consensus       156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~  235 (480)
T KOG2563|consen  156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVF  235 (480)
T ss_pred             HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44434345567789999999999999888888887776665544          2322  34434444443333333333


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhcccccccee
Q 024030          192 KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQA  267 (273)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  267 (273)
                      +++++......                        .......++.+.++..++|+++..+.+++..-...+.+.++
T Consensus       236 ~~~P~tPps~s------------------------~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~  287 (480)
T KOG2563|consen  236 TKKPPTPPSAS------------------------QAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLST  287 (480)
T ss_pred             CCCCCCCCchh------------------------HhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHH
Confidence            43333222210                        00000124666777788999998887776665544444433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.00  E-value=7e-09  Score=84.92  Aligned_cols=126  Identities=19%  Similarity=0.246  Sum_probs=95.1

Q ss_pred             HHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhH-HHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh
Q 024030           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFF-YAYYALRTLTAMVCEGSINCLALAYVADNISE  139 (273)
Q Consensus        61 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  139 (273)
                      .+.-+-+.++.+++.||+|||+.+..+.+++.+..++.....+.+.+ .+++.+|+...    +.+ .+.+.|..|++|.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~f-qvaYvYtPEVyPT  465 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAF-QVAYVYTPEVYPT  465 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chh-eEEEEecCcccch
Confidence            56677888999999999999999999999988888777655443322 33445565543    233 5778899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHhc
Q 024030          140 RQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLK  192 (273)
Q Consensus       140 ~~r~~~~~~~~~~~~~g~~~gp~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      ..|+.+.|.-+....+|+++.|+++-..  ....+..+.+...+++.+... ++|
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavc-ffP  519 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVC-FFP  519 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHhe-eee
Confidence            9999999999999999999999998433  334566666666666666633 445

>TIGR01272 gluP glucose/galactose transporter

Probab=99.00  E-value=4.3e-09  Score=87.14  Aligned_cols=137  Identities=12%  Similarity=-0.027  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Q 024030          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-------------------  167 (273)
Q Consensus       107 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-------------------  167 (273)
                      ++.+++..++.|. +.+...+..++++++..|+|++++.+++.+..+++|..+||.+++.+                   
T Consensus        10 ~~~~l~~~f~~g~-G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272        10 YVLFLGALFVLAS-GLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHh-hHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            8889999999998 77888899999999999999999999999999999999999998843                   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhc
Q 024030          168 -STTSAFQAATIVSMLAAAYMR-VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (273)
Q Consensus       168 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  245 (273)
                       .|+++|++.+.+..+..++.. ...||.+++++++                   .+ . ++..    ..+    ..+++
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~-------------------~~-~-~~~~----~~~----~~~~~  139 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVAR-------------------VS-S-GDTT----QKT----SAFQF  139 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccc-------------------cc-c-cccc----chh----hHHhh
Confidence             367788766555444433322 2223321111100                   00 0 0000    111    14466


Q ss_pred             chhHHHHHHHHHhccccccceeeeeccC
Q 024030          246 VTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      |.++...+..|++..++.+..+|++.|+
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl  167 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFL  167 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888889999888888774

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.97  E-value=1.4e-07  Score=77.29  Aligned_cols=164  Identities=17%  Similarity=0.149  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhhHHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPL   88 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~   88 (273)
                      -|.+.+...++...+|....++|.++.|.        +.|..+.|...+...+.+...++....+++|. ++|+......
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~--------G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILIDR--------GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            45555566677788899999999998875        78888999999999999999999999999965 5566666777


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .++.++...+.+.+..+.+++    .++.|+ +.|..++.....+.+-.++ ++-++-.|+.+....+=..+||.+.|.+
T Consensus       282 ~~~l~G~~G~~~~P~~~~~lw----~~llG~-G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPILW----ALLLGL-GQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH----HHHHhC-ccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            777788777777776443322    377888 4455558888888887654 4445555555555555567789999998


Q ss_pred             -----hhHHHHHHHHHHHHHHHHH
Q 024030          168 -----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       168 -----~~~~~~~~~~~~~~~~~~~  186 (273)
                           +|+.+........+...+.
T Consensus       357 hDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         357 HDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHH
Confidence                 6777777665555544444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.96  E-value=2.7e-07  Score=77.87  Aligned_cols=130  Identities=14%  Similarity=0.090  Sum_probs=100.8

Q ss_pred             HHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh
Q 024030           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER  140 (273)
Q Consensus        61 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  140 (273)
                      .-.++...++...+.|..|.|++++++.+...+...++.+.++   .+.+-+..+..|+ ..+.- .+..+++-...|++
T Consensus        51 tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~-~~a~e-vay~sYiys~v~~~  125 (412)
T PF01770_consen   51 TYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---VLAMQLMQFFYGL-ATAAE-VAYYSYIYSVVDKE  125 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHH-HHHHH-HHHHHHheeecCHH
Confidence            4556677788889999999999999999998888888888888   8889999999997 44444 68889998999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          141 QRASAFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       141 ~r~~~~~~~~~~~~~g~~~gp~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      +-.++.+......-+|..++..+|-.+      +.....++......+++++ .+++|..++
T Consensus       126 ~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~-~~fLP~~~~  186 (412)
T PF01770_consen  126 HYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI-ALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHcCCCCc
Confidence            999999999888888888887777665      3344455554444444444 566776543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.95  E-value=5.1e-08  Score=84.61  Aligned_cols=170  Identities=15%  Similarity=0.137  Sum_probs=122.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc-----
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK-----   81 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr-----   81 (273)
                      .+.++..++..+....+.+....++|.|+++.+       +.+....|++.++..+...+...++|.++||.-+|     
T Consensus       257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL-------~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t  329 (466)
T KOG2532|consen  257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL-------GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSET  329 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchH
Confidence            346788889999999999999999999998753       56667789999999999999999999999998662     


Q ss_pred             ---hhh-HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 024030           82 ---AML-TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF  157 (273)
Q Consensus        82 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  157 (273)
                         |.+ .++....++..+.+.+.+..+....+...-+..++  .|...+....-..|. .++.-+..+|+.+....++.
T Consensus       330 ~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~--~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~  406 (466)
T KOG2532|consen  330 TVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL--SGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAG  406 (466)
T ss_pred             hHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH--cccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHH
Confidence               222 24555566666666666643332222222222332  233323333333333 45888999999999999999


Q ss_pred             HHHHHHHHHh-------hhHHHHHHHHHHHHHHHHH
Q 024030          158 VCGTLAARFL-------STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       158 ~~gp~~~~~l-------~~~~~~~~~~~~~~~~~~~  186 (273)
                      +++|.+.+.+       .|+..|.+.+++.++..+.
T Consensus       407 ~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~  442 (466)
T KOG2532|consen  407 FIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII  442 (466)
T ss_pred             HHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence            9999998876       6899999998888777654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.90  E-value=1.6e-06  Score=75.22  Aligned_cols=232  Identities=11%  Similarity=0.124  Sum_probs=133.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhH-hhhhhHHhhhhCCchhhH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVM-MPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~grr~~~~   85 (273)
                      .+.+....+..++..+.++...+.=-.....     ..  +.+.....++.+...+...+. .++.+++++|++|++++-
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~-----~~--~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~   78 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRDTKDTLVVT-----AK--GSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFY   78 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhheeec-----cc--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHH
Confidence            4455666666677666666655543332211     00  112234566666666655555 889999999999999988


Q ss_pred             HHHHHHHHHHHHHHhc--cCchh--------------------------HHHHHHHHHHHhhhchhhHHH-HHHHHHHhc
Q 024030           86 LPLTLSIIPLAILAYR--RSISF--------------------------FYAYYALRTLTAMVCEGSINC-LALAYVADN  136 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~--~~~~~--------------------------~~~~~~~~~l~g~~~~~~~~~-~~~~~~~~~  136 (273)
                      .....+.....++++.  ++.+.                          .|...+..+...+ .+....+ ..+++.+|.
T Consensus        79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el-w~~~vvS~lFW~fandi  157 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL-WGSVVLSLLFWGFANQI  157 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            7776666665555432  11000                          2222233333333 2222323 778899999


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hH----HHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030          137 ISERQRASAFGILLGVLSASFVCGTLAARFLS------------TT----SAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (273)
Q Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (273)
                      ++.++-.|..++.+.+.++|..+++.+..++.            |.    ..+.+..+...+...+ ...+.+....+++
T Consensus       158 ~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-~~~l~~~~~~~~~  236 (472)
T TIGR00769       158 TTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILL-YWWVNRNVLTDPR  236 (472)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCcc
Confidence            99999999999999999999999998877763            11    1222222222322222 3333322211111


Q ss_pred             CCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccc
Q 024030          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGM  265 (273)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  265 (273)
                      .              ...++    ++.+.+...+..+.++.+.|+|.++..++...+++.+...+
T Consensus       237 ~--------------~~~~~----~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlv  283 (472)
T TIGR00769       237 S--------------YNPAL----KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLV  283 (472)
T ss_pred             c--------------cchhh----ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            0              00000    11111223367788888999999999888888886655443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.90  E-value=1.1e-07  Score=75.37  Aligned_cols=147  Identities=16%  Similarity=0.125  Sum_probs=96.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC----chhHHHHHHHHHHHhhhc
Q 024030           46 CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS----ISFFYAYYALRTLTAMVC  121 (273)
Q Consensus        46 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~  121 (273)
                      ++.+..+...+.+...++..+ +++.|.+.|++|+|.++.+|.+...++.......-+    ..+.|.+.+...+.|. +
T Consensus        32 l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~-s  109 (250)
T PF06813_consen   32 LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN-S  109 (250)
T ss_pred             hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc-c
Confidence            344555556666666777765 588999999999999999999998888877653321    1236777777777665 4


Q ss_pred             hhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--ST-TSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      .....++......+.+| ++||++.|+.-...++++.+-..+...+  +. ..-+.+.+....+..++..+++++.+
T Consensus       110 ~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  110 SCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             HHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            44444566666667887 6899999999999888876655554444  22 23333444444444444445555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.88  E-value=1.4e-07  Score=83.31  Aligned_cols=131  Identities=15%  Similarity=0.133  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHhHhhhhhHHhhhh----CCchhhHHHHHHHHHHHHHHHhccCc------hhHHHHHHHHHHHhhhch
Q 024030           53 SGFQQAIIGLGTLVMMPVIGNLSDQY----GRKAMLTLPLTLSIIPLAILAYRRSI------SFFYAYYALRTLTAMVCE  122 (273)
Q Consensus        53 ~g~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~  122 (273)
                      .++..+.+.+...+..|+.+++-+|.    +.++.+.+|.++.+++........+.      -+.+++....++.|+ +.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~-ge  396 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSI-GE  396 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH-HH
Confidence            46666777777777777775554544    44466778888888887766544321      124578888999998 77


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHH
Q 024030          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------STTSAFQAATIVSMLAA  184 (273)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--------------~~~~~~~~~~~~~~~~~  184 (273)
                      ....|...+++.+..|++.|++.+|.+.....+|..++..+.+..              +..+.|...++..++..
T Consensus       397 ~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a  472 (500)
T PRK09584        397 LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA  472 (500)
T ss_pred             HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999888888877776655421              24566666665554433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.87  E-value=2.9e-08  Score=83.91  Aligned_cols=139  Identities=14%  Similarity=0.050  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      .++...+..+...........+.|.|.++..       +.+....|.+.+...+...++.++.|+++||+|+|+.+..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~  298 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQF-------GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSF  298 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHH
Confidence            3344444444444445556678888886643       444566787888888899999999999999999998887776


Q ss_pred             HHHHHHHHHHHhccCch-hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 024030           89 TLSIIPLAILAYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (273)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  156 (273)
                      .....+..+..+..... ..+...+...+.++ ..+...+...+.+++..| +++++++|+.+...++|
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       299 LGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF-FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH-Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            66655555444322210 13433333333333 233333566777888877 68999999988877665

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.87  E-value=5.9e-07  Score=78.18  Aligned_cols=189  Identities=11%  Similarity=0.040  Sum_probs=131.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCc----chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC-c
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLD----ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-K   81 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr-r   81 (273)
                      .+.++.++...++..++..-...+...+..+.+-.+++    .++...-...+....+.+...+.+++..++.+|+|+ |
T Consensus       257 P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k  336 (477)
T TIGR01301       257 PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK  336 (477)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            45677788899999998887777777777653222211    112222223345556667767888888999999995 6


Q ss_pred             hhhHHHHHHHHHHHHHHHhccC------------------chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh--hh
Q 024030           82 AMLTLPLTLSIIPLAILAYRRS------------------ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQ  141 (273)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~  141 (273)
                      ++..++.++.+++.....+..+                  ....+..++...+.|+ .-+..+...++++++..++  ++
T Consensus       337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi-~~A~~~siPfal~s~~~~~~~~~  415 (477)
T TIGR01301       337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGI-PLAITYSIPFALASIRSSNLGAG  415 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhH-HHHHHHHHhHHHHHHHccccCCC
Confidence            6768887777776665553322                  0002566677778888 5566668999999999985  45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          142 RASAFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       142 r~~~~~~~~~~~~~g~~~gp~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      .|..+|+.+.+..+.+.+..+..|.+      +....+.+.++..+++.+...+.+|++++
T Consensus       416 ~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       416 QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            59999999999999998887766664      23566777778888888887888887654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.86  E-value=1.4e-07  Score=80.89  Aligned_cols=152  Identities=14%  Similarity=0.137  Sum_probs=112.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.+....+..++...+.......+..|.+..+       +.+.............+.+++.+++.++++|+|+|+++.+
T Consensus       235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l-------g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~  307 (467)
T COG2211         235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL-------GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLI  307 (467)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEc-------CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHH
Confidence            445555666677777777777777777765543       3444555666677788888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhh-------HHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-------RASAFGILLGVLSASFVC  159 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~g~~~  159 (273)
                      +.++.+++..++.+.+. +..+.+++..++.++ +.+..++..+++++|..+-++       -|...|......-+|..+
T Consensus       308 ~~~~~~i~~~~~~f~~~-~~~~l~~~~~~i~~~-g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al  385 (467)
T COG2211         308 GLLLLAVGYLLLYFTPA-GSVVLIVVALIIAGV-GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL  385 (467)
T ss_pred             HHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHH-HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence            99999999988888773 236777888888887 667777899999999876433       344556666677777777


Q ss_pred             HHHHHHHh
Q 024030          160 GTLAARFL  167 (273)
Q Consensus       160 gp~~~~~l  167 (273)
                      +..+.++.
T Consensus       386 a~~~~g~~  393 (467)
T COG2211         386 AGFIPGWI  393 (467)
T ss_pred             HHHHHHHH
Confidence            76665554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.82  E-value=6.3e-07  Score=77.24  Aligned_cols=149  Identities=7%  Similarity=-0.048  Sum_probs=96.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      +.++...+..++..........+++.|.++....      .+....+...+.+.....++.++.+++.||+++|+.+.++
T Consensus       232 ~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~------~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~  305 (410)
T TIGR00885       232 RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPG------MTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAY  305 (410)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            3444445555555555555667888888653111      1112223334444566778888999999999999998888


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .....+..++....++   ... .....+.|+ +.+..+|...+...+..+++.+..+.++...  .+|..+.|.+.|.+
T Consensus       306 ~~~~~~~~ll~~~~~~---~~~-~~~l~~~gl-f~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~  378 (410)
T TIGR00885       306 AIIGMALCLGSIFAGG---HVG-LYCLTLCSA-FMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFI  378 (410)
T ss_pred             HHHHHHHHHHHHHcCC---hHH-HHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHH
Confidence            8888877777777655   333 344455565 3344448999999999986654334443333  38999999999988


Q ss_pred             hh
Q 024030          168 ST  169 (273)
Q Consensus       168 ~~  169 (273)
                      .+
T Consensus       379 ~d  380 (410)
T TIGR00885       379 ID  380 (410)
T ss_pred             HH
Confidence            54

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.80  E-value=1.2e-06  Score=71.37  Aligned_cols=156  Identities=23%  Similarity=0.288  Sum_probs=109.7

Q ss_pred             HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHH
Q 024030           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (273)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~   96 (273)
                      .+..........+..+.+..+......     . ...++..+...+...++.++.|.++||+|||+.+..+......+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~   84 (338)
T COG0477          11 ALLLGLDLGLLSPALPLLLSTLSLSSG-----R-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTL   84 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHHHcCCCch-----h-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHH
Confidence            333335555566677777655311110     0 3567888888899999999999999999999888877765444444


Q ss_pred             HHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh-hhHHHHHHHHHH-HHHHHHHHHHHHHHHh------h
Q 024030           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLG-VLSASFVCGTLAARFL------S  168 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~gp~~~~~l------~  168 (273)
                      ...+..+ ...+.+.+.|...|+ +.+...+...+++.|..|+ ++|+...+.... ...+|..++|.+++.+      +
T Consensus        85 ~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (338)
T COG0477          85 LLALAPN-VGLALLLILRLLQGL-GGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG  162 (338)
T ss_pred             HHHhCcc-chHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4444443 337888889998888 5566778999999999997 678888888877 5778888888776655      4


Q ss_pred             hHHHHHHHHHHH
Q 024030          169 TTSAFQAATIVS  180 (273)
Q Consensus       169 ~~~~~~~~~~~~  180 (273)
                      |+..+.......
T Consensus       163 ~~~~~~~~~~~~  174 (338)
T COG0477         163 WRAAFLLAALLG  174 (338)
T ss_pred             hHHHHHHHHHHH
Confidence            666554444433

>PRK11462 putative transporter; Provisional

Probab=98.78  E-value=2.5e-06  Score=74.73  Aligned_cols=112  Identities=11%  Similarity=0.091  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  133 (273)
                      +.+.+.+.++.+++.+++++++||+|+|+.+..+.....+...+..+.+..+ .+.+++..++.|+ +.+...+...+++
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~-~~~~~~~l~~~m~  343 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQA-SITMFVFIFVIGV-LHQLVTPIQWVMM  343 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            4556677888889999999999999999887755544444333333333321 2233444455676 4455556677888


Q ss_pred             HhcCChh-----hH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030          134 ADNISER-----QR--ASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       134 ~~~~~~~-----~r--~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      +|..+.+     +|  +...+.......+|..+|+.+++.+
T Consensus       344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877632     33  3444666678888888888777664

>TIGR00788 fbt folate/biopterin transporter

Probab=98.78  E-value=7.3e-08  Score=84.40  Aligned_cols=123  Identities=12%  Similarity=0.039  Sum_probs=98.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccC-------chhHHHHHHHHHH
Q 024030           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS-------ISFFYAYYALRTL  116 (273)
Q Consensus        44 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l  116 (273)
                      ...+.++...|.+.....++.+++....+++.+|++.|+++.++.++.+++........+       ....+.+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            356788889999999999999999999999999999999999998888877644321100       0112344455666


Q ss_pred             HhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030          117 TAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       117 ~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .++ ..+....+...++.+..|++.+++..++..+..++|..+++.+++.+
T Consensus       361 ~~~-~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       361 AEV-LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             HHH-HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            676 55566677899999999999999999999999999999999988877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.78  E-value=2.3e-08  Score=84.03  Aligned_cols=153  Identities=16%  Similarity=0.149  Sum_probs=103.8

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh----hhCCchhh
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAML   84 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~   84 (273)
                      .+..+....+-..++...-..+.+.|+++.        +....+.+.+.....+..++.+|+.|..+|    |+||||.+
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~l--------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf  104 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQSL--------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF  104 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHc--------CCCcccccccccccccccceecccccccccccccccccccch
Confidence            344444444445566667778888888764        444455666777778889999999999999    58999988


Q ss_pred             HHH-HHHHHHHHHHHHhccC--------chh------HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHH-HHHH
Q 024030           85 TLP-LTLSIIPLAILAYRRS--------ISF------FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS-AFGI  148 (273)
Q Consensus        85 ~~~-~~~~~~~~~~~~~~~~--------~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~  148 (273)
                      +.. .....++..+..+...        ...      ....++...+.=+ ..-.......+++.|....+++.+ +++.
T Consensus       105 I~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~-A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~  183 (498)
T KOG0637|consen  105 ILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDV-ANNTLQGPCRALLADLARGDAKKTRANSV  183 (498)
T ss_pred             HHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHh-hhhhhhhhHHHHHHHhccChhhhhccchh
Confidence            854 4455555555544322        111      1122222223333 333555789999999987666666 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhH
Q 024030          149 LLGVLSASFVCGTLAARFLSTT  170 (273)
Q Consensus       149 ~~~~~~~g~~~gp~~~~~l~~~  170 (273)
                      +....++|+.+|..++++.+++
T Consensus       184 f~~f~avGnvLGY~~g~y~~~~  205 (498)
T KOG0637|consen  184 FSFFMAVGNVLGYALGSYLGLY  205 (498)
T ss_pred             HHHHHHhcceeeeecccccCce
Confidence            9999999999999988888764

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.75  E-value=1e-06  Score=76.02  Aligned_cols=165  Identities=12%  Similarity=0.053  Sum_probs=93.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      +.++...+...+............|.++++..       +.+....|+.......+..+++.+.+++.+|..+++.....
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~-------g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  290 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAG-------GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRA  290 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH
Confidence            34444444444455555556667788886642       45556667777667777788888888876555444443222


Q ss_pred             HHHHHHHHHHHH----hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030           88 LTLSIIPLAILA----YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        88 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      .....++..+..    ..++  .++..++..++.++ +.+...+...+.. ..-.+..+|++.++.+.....+..+++..
T Consensus       291 ~~~~~ig~~l~~~~~~~~~~--~~~~~~~~~~l~~~-G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~  366 (413)
T PRK15403        291 VPIQLVGLALLIVGNLLWPH--VWLWSVLGTSLYAF-GIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEI  366 (413)
T ss_pred             HHHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHH-HHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            222222222221    1222  13334556666666 4455545555322 12222347899999888888888888888


Q ss_pred             HHHh---hhHHHHHHHHHHHHHH
Q 024030          164 ARFL---STTSAFQAATIVSMLA  183 (273)
Q Consensus       164 ~~~l---~~~~~~~~~~~~~~~~  183 (273)
                      ++++   +-..+|....++..+.
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        367 GRWLWFNGGRLPFHLLAVVAGVI  389 (413)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHH
Confidence            8777   3456666555554433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.73  E-value=2.8e-08  Score=83.64  Aligned_cols=190  Identities=15%  Similarity=0.105  Sum_probs=119.5

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHh-hcCCCCcchhHHHHHHHHHHHHHHHH-HHhHhhhhhHHhhhhCCchhhHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMM-ALCPGLDECSLAIYLSGFQQAIIGLG-TLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      .+.......|+.-++.+....+....+++ ...+++.+. ...........+..+. .+.+.++...++|+.|||++.+.
T Consensus       305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~-~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY-HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH-HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            34444556666666777777677777664 233333332 1222233333333333 34477888899999999999999


Q ss_pred             HHHHHHHHHHHHHhccCch-hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                      +..++.+..+..+...++. ....+++...+..+.+.-.-.+....+-+|.+|.+.|+...|+.....-.|.++|...-.
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            9999988887777554411 111222222222221111111344556699999999999999999999999999976655


Q ss_pred             Hh---------hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030          166 FL---------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (273)
Q Consensus       166 ~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (273)
                      .+         +.+..+++.+....+..+. .+++||++.+..+
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~-T~l~pEtk~~~le  506 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILF-TLLIPETKGKSLE  506 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHhe-eEEeecccccCHH
Confidence            54         4578888887777766655 5667887654443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.68  E-value=6.8e-07  Score=79.33  Aligned_cols=182  Identities=15%  Similarity=0.096  Sum_probs=110.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      ++.+....+..+.+..+......+.+.+.+.....+ +.        .....+..+...++..+...+.||+|||+.++.
T Consensus       294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~-~~--------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~  364 (513)
T KOG0254|consen  294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKS-DT--------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLF  364 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCC-ch--------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            334445556666666777778888888876632111 11        111223355566666677999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCc---------h--hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSI---------S--FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA  155 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  155 (273)
                      +...+.++.++++.....         .  ..........+..+ ..+.. +..+.+.+|.+|.+.|+++.++......+
T Consensus       365 s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f-~~g~g-~v~w~~~sEifp~~~r~~~~s~~~~~n~~  442 (513)
T KOG0254|consen  365 GAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSF-AIGWG-PVPWVIVSEIFPLRLRSKGASLAVAVNWL  442 (513)
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHH-hcccc-cchhhhhhccCcHhHHhhhHHHHHHHHHH
Confidence            999999888776632110         0  11112222222222 32333 56667889999999999999988776665


Q ss_pred             HHHHHHHH----HHHhhhHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCC
Q 024030          156 SFVCGTLA----ARFLSTTSAFQAATIVSMLAAA-YMRVFLKDDVPNDD  199 (273)
Q Consensus       156 g~~~gp~~----~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  199 (273)
                      ...+-...    ....++...|...+..+.+... .++++.||++....
T Consensus       443 ~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl  491 (513)
T KOG0254|consen  443 WNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL  491 (513)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence            54333222    1111234566666666666655 56778899866544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.63  E-value=7.7e-06  Score=68.61  Aligned_cols=148  Identities=20%  Similarity=0.165  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh-hhCCchhhHHHHHH
Q 024030           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-QYGRKAMLTLPLTL   90 (273)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~   90 (273)
                      ..+...++..+++++--..+-.|--+       .++++..+..-+......+.+++....|++.. |.++|+.-.+++..
T Consensus       212 ~f~~fl~l~t~a~~~QD~iLEPygg~-------Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~  284 (403)
T PF03209_consen  212 RFFVFLFLGTLAFFMQDVILEPYGGE-------VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL  284 (403)
T ss_pred             HHHHHHHHHHHHHHhhHHHcCCchhH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            34445555566666666666666433       34666666666777778888888888888877 67777777788888


Q ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .+++..+...+....+.+.+....++.|+ +.|.+.....+...|..++++.|..+|.+...+.++..+|.++++.+
T Consensus       285 ~~~~f~lii~a~~~~~~~~~~~~~~l~G~-g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  285 GALAFALIILAGPLGSPWLFRPGVFLLGL-GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777665554443337888899999998 77888888899999999999999999999999999999998888876

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.61  E-value=4.3e-07  Score=58.35  Aligned_cols=68  Identities=21%  Similarity=0.234  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (273)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~   90 (273)
                      ...++...+.....|++|.|.++.        +.+..++|.+.++..+..++++|++|.++||+++++.++.....
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~--------Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQL--------GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            344556667788899999998653        88889999999999999999999999999999999887765543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.60  E-value=2.2e-06  Score=77.61  Aligned_cols=154  Identities=16%  Similarity=0.100  Sum_probs=104.5

Q ss_pred             HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchhhHHHHHHHHHHHHHHHhccC
Q 024030           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRS  103 (273)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~  103 (273)
                      +.....+..|+.+..       +.+...+..+...+....-+...++|.++|+ +|+++.+.++.++..++..+..+...
T Consensus         4 YGm~aiLvlYl~~~l-------g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~   76 (654)
T TIGR00926         4 YGMRTILVLYFLNFL-------GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI   76 (654)
T ss_pred             eecHHHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence            334455556655432       3333444445555666667788889999996 69999999999988888877765422


Q ss_pred             c-----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q 024030          104 I-----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISER---QRASAFGILLGVLSASFVCGTLAARFLS-------  168 (273)
Q Consensus       104 ~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~gp~~~~~l~-------  168 (273)
                      .     ......+++..+..+ +.|..-+...+...|-++++   +|.+.+.+++.+.++|+.+++.+..++.       
T Consensus        77 ~~~~~~~~~~~~l~gLaLia~-G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg  155 (654)
T TIGR00926        77 PSSGHPLHDLLDLLGLALIAL-GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG  155 (654)
T ss_pred             cccccchHHHHHHHHHHHHHh-hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            1     011224444445454 55666688999999988753   4777888889999999999988776662       


Q ss_pred             ----hHHHHHHHHHHHHHHHHH
Q 024030          169 ----TTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       169 ----~~~~~~~~~~~~~~~~~~  186 (273)
                          |...|.+.++..++++++
T Consensus       156 ~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926       156 CQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             cCcchHHHHHHHHHHHHHHHHH
Confidence                667777777776666555

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.54  E-value=1.3e-05  Score=69.61  Aligned_cols=145  Identities=19%  Similarity=0.188  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-----CCchhhHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHhhh
Q 024030           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAMLTLPLTLSIIPLAILAYRRS-ISFFYAYYALRTLTAMV  120 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~  120 (273)
                      +.++.+.....+...+. -...|+.|.++|-+     .||+-++++.++..++...++..+. ..+.....+..++..+ 
T Consensus        21 ~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~-   98 (433)
T PF03092_consen   21 GLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF-   98 (433)
T ss_pred             CCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH-
Confidence            55555555555555555 46688899999986     2444445666666555555554333 2224444455555555 


Q ss_pred             chhhHHHHHHHHHHhcCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 024030          121 CEGSINCLALAYVADNIS--ERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD  193 (273)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      +.........+.+.|...  ++.|+...+.......+|.+++..++|.+    +.+..|.+.+.+..+..+...+..+|
T Consensus        99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen   99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            555666788888888763  33478888888888999999998888877    55777888877777766665555665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.52  E-value=8.2e-06  Score=72.56  Aligned_cols=150  Identities=17%  Similarity=0.115  Sum_probs=95.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCch-hhHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-MLTL   86 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~   86 (273)
                      |.+....+..++....++....+.|.......+.+...    ....++......++...+..+.|.+..+.+|-| .+++
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~----~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~  385 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPIS----ITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIF  385 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc----cceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHH
Confidence            45555555666666556666677777765533222111    112456666677888888888999999887644 5556


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      +.++..++..+++..+..+ ....+...++.|+ +.|...........-..|++.-+.+.|+..+...+|+.+|..+
T Consensus       386 ~~~~~ta~~Gama~~~~~n-~~~~i~~~~l~g~-giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  386 GSVLMTAFCGAMAAVRPDN-KNAAIAFLVLAGF-GIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI  460 (599)
T ss_pred             HHHHHHHHHHHHHHccCCC-cchHHHHHHHHHH-hHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            7666665555555443322 2233455667776 4444434556666667889999999999999999988877543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.52  E-value=1.2e-08  Score=80.83  Aligned_cols=119  Identities=16%  Similarity=0.119  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhH
Q 024030           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI  125 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  125 (273)
                      +.......++.++++...++...++|++.|| +|-|..-++-+....++-++++.-...+.+|.+...|++.|+|+.+..
T Consensus        75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlA  154 (459)
T KOG4686|consen   75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLA  154 (459)
T ss_pred             ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhh
Confidence            3333455677788899999999999999996 577765555555555566666543333349999999999999666655


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus       126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                       .+.+.+...++..++.+.++|+..+...+|..+.-.+.++
T Consensus       155 -VaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~  194 (459)
T KOG4686|consen  155 -VAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPF  194 (459)
T ss_pred             -hhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHH
Confidence             7889999999999999999999999999997665333333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.45  E-value=3e-05  Score=56.99  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=80.3

Q ss_pred             HHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh
Q 024030           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER  140 (273)
Q Consensus        61 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  140 (273)
                      .....+..++.+.+.+++|.|+.+++|.+...+-.... +.++   .+.++..-++.|+ +.+..++....++.+..+++
T Consensus        47 Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~-~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGF-GAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhh-hhHHhhHhhhHHHHHcCCHH
Confidence            33445555667788999999999999999888655444 3445   6788899999998 77888899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030          141 QRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus       141 ~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +|++..++.-.....+.++|.++.-.
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998877777777777665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.42  E-value=6.2e-05  Score=66.04  Aligned_cols=142  Identities=11%  Similarity=-0.023  Sum_probs=96.2

Q ss_pred             HHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCC--chh-----hHHHHHHHHHH
Q 024030           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR--KAM-----LTLPLTLSIIP   94 (273)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~-----~~~~~~~~~~~   94 (273)
                      ..+.-....+..|.+++++.+--.++.   -.++..+.+.+..++.+|+.+++-.|.+|  |..     +.+|.++.+++
T Consensus       282 ~~~~Q~~~sl~lfa~~~vd~~~~g~~i---p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~  358 (493)
T PRK15462        282 AFAQQGGSSISLYIDRFVNRDMFGYTV---PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAG  358 (493)
T ss_pred             HHHHHhhHHHHHHHHHhccchhcceee---CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence            333444456677776654332212223   24677788899889999999988777743  211     45677777777


Q ss_pred             HHHHHh----ccC--chhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 024030           95 LAILAY----RRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAARFL  167 (273)
Q Consensus        95 ~~~~~~----~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~gp~~~~~l  167 (273)
                      ...+.+    ...  ..+.+++++..++.++ +.-...|...+.+++..|++.|++.+|.+... ..+|..++..+++..
T Consensus       359 f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~-gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        359 FCILTLSARWSAMYGHSSLPLMVLGLAVMGF-AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH-HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            655542    111  1246678888888887 77788899999999999999999999998663 367766666655544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.37  E-value=3.4e-05  Score=64.49  Aligned_cols=150  Identities=15%  Similarity=0.073  Sum_probs=110.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.+....+..++..-...+...+++.|+.+.       .+.+..+.+...+.+..+.++++++..++..|+...|.+.+
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-------~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf  307 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-------LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAF  307 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            34555666777777767778888999998773       24555666777788888999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      ..+...+..+...+.++   ...+... ++.|+ ..+..+|...+...+..| + -....|..-....+|+.+-|.+.|+
T Consensus       308 ~a~~~ill~~~~~l~~g---~v~~~~l-~~ig~-F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~  380 (422)
T COG0738         308 YALIAILLLLAVALIGG---VVALYAL-FLIGL-FNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGV  380 (422)
T ss_pred             HHHHHHHHHHHHHHhcC---hHHHHHH-HHHHH-HhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHH
Confidence            88877777777777777   4444333 44455 445566999999999998 3 3444555555667788888999998


Q ss_pred             hhhH
Q 024030          167 LSTT  170 (273)
Q Consensus       167 l~~~  170 (273)
                      +..+
T Consensus       381 i~d~  384 (422)
T COG0738         381 IADM  384 (422)
T ss_pred             HHHh
Confidence            8554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.34  E-value=9.1e-06  Score=71.10  Aligned_cols=160  Identities=11%  Similarity=0.071  Sum_probs=95.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh----hCCchh
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM   83 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~grr~~   83 (273)
                      +.++...+..++.....+....++|.++.+.       .+.+....+.+...+.++.+++.++.|.++||    ..+|..
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~-------~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~  345 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN-------GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLL  345 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcC-------CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4566777778888888888999999999762       14555666777788899999999999999999    667766


Q ss_pred             hHHHHHHHHH-HHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHHHHHHHH
Q 024030           84 LTLPLTLSII-PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR-ASAFGILLGVLSASFVCGT  161 (273)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~gp  161 (273)
                      +.....+... +...+.....   .+..... ++.+..+.....+......++...++.| -...+....+.+.+..++|
T Consensus       346 ~~~~~~~~~~~g~~~l~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~  421 (495)
T KOG2533|consen  346 FIVFLCLYAIIGAISLLAAAV---LPGAYGA-FLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG  421 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhhcc---chHHhHH-HHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence            6655444443 3233333332   1222222 2222213334446677777777665544 3444444445555444443


Q ss_pred             H-HHH----HhhhHHHHHHHHH
Q 024030          162 L-AAR----FLSTTSAFQAATI  178 (273)
Q Consensus       162 ~-~~~----~l~~~~~~~~~~~  178 (273)
                      . ..+    ...|...|.....
T Consensus       422 ~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  422 QLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             hhcccccCcchhhhhHHHHHHH
Confidence            3 222    2255566644333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.34  E-value=4.3e-06  Score=54.27  Aligned_cols=75  Identities=20%  Similarity=0.270  Sum_probs=67.4

Q ss_pred             HHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHh
Q 024030           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (273)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  100 (273)
                      .++.+...|.+|...+|.        +++..+.|++.+.+.++++++.+...++.++.++++.+..+.+...+....+++
T Consensus         5 GigRFayTplLP~M~~~~--------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADG--------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             hhHHHHHHhHhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            567788899999997764        778889999999999999999999999999988889999999999999999988


Q ss_pred             ccC
Q 024030          101 RRS  103 (273)
Q Consensus       101 ~~~  103 (273)
                      .++
T Consensus        77 ~~~   79 (85)
T PF06779_consen   77 THS   79 (85)
T ss_pred             Hhc
Confidence            877

Note that many members are hypothetical proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.32  E-value=7.4e-10  Score=96.50  Aligned_cols=138  Identities=20%  Similarity=0.195  Sum_probs=91.0

Q ss_pred             HHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH--h--ccCch---hHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA--Y--RRSIS---FFYAYYALRTLTAMVCEGSINCLALAYV  133 (273)
Q Consensus        61 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~--~--~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~  133 (273)
                      .+...++.+....+.||+|||++++.+....+++...++  .  ..+..   ....+ +...+...+......+....+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~l~~~~~~~g~~~~~~~~~  374 (451)
T PF00083_consen  296 GLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI-VFLALFFAFFSLGWGPLPWIYT  374 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-eeeeeccccccccccccccccc
Confidence            344556667777999999999999988888777666553  1  11210   11111 1111111112212336677888


Q ss_pred             HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 024030          134 ADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (273)
Q Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (273)
                      +|.+|.+.|+++.++......++..++|.+...+    +-...+.+.+.+.++..+..++++||++.+.-
T Consensus       375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l  444 (451)
T PF00083_consen  375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTL  444 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence            9999999999999999998888888887765554    32445666666666666666788999876543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.29  E-value=0.00012  Score=63.06  Aligned_cols=170  Identities=16%  Similarity=0.126  Sum_probs=101.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      |..+.++...++...+.-+.....|.++.+..       .-+....+.....-.+..++.++..|.+.||..|.++...+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~-------p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~   74 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIF-------PGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTS   74 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHH
Confidence            44556777888888888888888898887742       11223334444555777889999999999999999987766


Q ss_pred             HHHHHHHHH----HHH--hcc-C-----chhHHHHHHHHHHHhhhchhhHHHHHHH------HHHhcC--ChhhHHHHHH
Q 024030           88 LTLSIIPLA----ILA--YRR-S-----ISFFYAYYALRTLTAMVCEGSINCLALA------YVADNI--SERQRASAFG  147 (273)
Q Consensus        88 ~~~~~~~~~----~~~--~~~-~-----~~~~~~~~~~~~l~g~~~~~~~~~~~~~------~~~~~~--~~~~r~~~~~  147 (273)
                      .+.--++..    ++.  +.. .     ....+.+++...+.|. ..-.. .....      ++..+.  +++.+.+.++
T Consensus        75 l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~La-s~~~~iavERDWVvvi~~~~~~~La~~NA  152 (432)
T PF06963_consen   75 LVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA-IERLA-SIANTIAVERDWVVVIAGGDPGALARMNA  152 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH-HHHHH-HhhhhheeccchhhhhcCCChhhHHHHHH
Confidence            554333222    111  111 1     1112223333333332 11111 22222      222333  4566777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030          148 ILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       148 ~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~  186 (273)
                      ...-...+..++||++.|.+    +.+....+.++..++...+
T Consensus       153 ~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  153 TMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            88778888999999999887    4455555555555555544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.28  E-value=0.00023  Score=63.47  Aligned_cols=137  Identities=19%  Similarity=0.137  Sum_probs=93.9

Q ss_pred             HHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhH
Q 024030           63 GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR  142 (273)
Q Consensus        63 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r  142 (273)
                      .........+...|+.|||.....+.....++.+...........+...+...+..+ +.+........+.+|..|+..|
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~el~pt~~r  440 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKF-FIGSAFNLIFLYSAELIPTVVR  440 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccHHHH
Confidence            444444555889999999999999999999988888876653321122333333222 2233334668899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030          143 ASAFGILLGVLSASFVCGTLAARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (273)
Q Consensus       143 ~~~~~~~~~~~~~g~~~gp~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (273)
                      ..+.+..+....+|.+++|.+......   ...+.+.+....+...+...++||+....-.
T Consensus       441 ~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~  501 (521)
T KOG0255|consen  441 NTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLP  501 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCc
Confidence            999999999999999999988765532   2222223455555555556788998765543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=4.2e-06  Score=69.64  Aligned_cols=166  Identities=10%  Similarity=0.073  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchh--hHHH
Q 024030           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM--LTLP   87 (273)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~--~~~~   87 (273)
                      ++.........+.+..+.-|.++.+..|.++-.       ..+.|+.....++.+.++..+.|.++||++.-+.  -..+
T Consensus       272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p-------~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~g  344 (464)
T KOG3764|consen  272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTP-------GWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGG  344 (464)
T ss_pred             HhhhhcchhhccchHHHhCcccHHHHHHhccCC-------CcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHH
Confidence            333344444566777888899999887765422       1244666666688999999999999999994333  3344


Q ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh---h---hHHHHHHHHHHHHHHHHHHHH
Q 024030           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE---R---QRASAFGILLGVLSASFVCGT  161 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~---~r~~~~~~~~~~~~~g~~~gp  161 (273)
                      .+....+.....+.++   +..+++-+...++ +.+...+.......+..+.   +   ..|...++......+|..+||
T Consensus       345 l~~~G~~~~~iP~~~~---~~~L~vp~~~l~~-~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP  420 (464)
T KOG3764|consen  345 LATVGVSSGPIPFATS---IAQLWVPNFGLGF-GIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGP  420 (464)
T ss_pred             HHHHHHHhchhHhhhh---HHHHhhhhHHHHH-HHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccc
Confidence            4444444555556666   6666666666665 3333333333333443332   2   567888999999999999999


Q ss_pred             HHHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030          162 LAARFL----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       162 ~~~~~l----~~~~~~~~~~~~~~~~~~~  186 (273)
                      .++|.+    |.+|.-.+.+...++-..+
T Consensus       421 ~~gg~iv~~iGF~wl~~iig~~n~iyapv  449 (464)
T KOG3764|consen  421 TFGGSLVEAIGFEWLMTIIGILNLIYAPV  449 (464)
T ss_pred             cccchheeehhHHHHHHHHHHHHHHHHHH
Confidence            999988    6666666666655554333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.20  E-value=0.00022  Score=60.49  Aligned_cols=132  Identities=12%  Similarity=0.049  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  133 (273)
                      |.+..+..+..++..+.+.++.+|...+.-+..+..+..++.++.+++++   .+.-+++-++.++ +.|..-....++ 
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~-ssg~GE~tfL~l-  136 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASL-SSGLGEVTFLSL-  136 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhh-hhhhhHHHHHHH-
Confidence            55666677788888888889999988766666677778888888888777   7777777777776 444443344444 


Q ss_pred             HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          134 ADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +..+++    ...+-++++.+.++++|+..-..+     +.|..+.....++++..+..++.+|++
T Consensus       137 t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  137 THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             HHhcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            445553    345666777777777776543222     346667776666655554444455543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.10  E-value=0.0011  Score=58.09  Aligned_cols=185  Identities=11%  Similarity=0.119  Sum_probs=104.3

Q ss_pred             HHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc--c-------Cc-----------h--------hHHHHHHHH
Q 024030           63 GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--R-------SI-----------S--------FFYAYYALR  114 (273)
Q Consensus        63 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~-------~~-----------~--------~~~~~~~~~  114 (273)
                      ..++...+..+++||++|.+++-.....+.....++++.  |       +.           +        ..|...+..
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            345667779999999999998876666555554444421  1       10           0        012222222


Q ss_pred             HHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHH
Q 024030          115 TLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST-------------TSAFQAATIVSM  181 (273)
Q Consensus       115 ~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~-------------~~~~~~~~~~~~  181 (273)
                      +..-+.+.-...-.-+.+.+|.++.++-.|..++.+.+.++|.+++..+...+..             ...+.....+..
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~  230 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVL  230 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHH
Confidence            2222211112212468899999999999999999999999999988776655522             222221111111


Q ss_pred             -H--HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHh
Q 024030          182 -L--AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFS  258 (273)
Q Consensus       182 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  258 (273)
                       .  ........+.+....++..                  .+...++..++.+.+.++.++.+.|+|.++.+++...++
T Consensus       231 ~~g~~i~~~~~~~~~~vl~~~~~------------------~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Y  292 (491)
T PF03219_consen  231 ILGIVIILLYRYMNKNVLTDPRF------------------YPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAY  292 (491)
T ss_pred             HHHHHHHHHHHHHHHHccCcccc------------------chhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Confidence             1  1111122332221111110                  001112222333447788888999999999999988888


Q ss_pred             ccccccc
Q 024030          259 GLSEGGM  265 (273)
Q Consensus       259 ~~~~~~~  265 (273)
                      +.+...+
T Consensus       293 gi~inLv  299 (491)
T PF03219_consen  293 GISINLV  299 (491)
T ss_pred             HHHHHHH
Confidence            7765443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.90  E-value=0.0016  Score=56.28  Aligned_cols=154  Identities=13%  Similarity=0.120  Sum_probs=105.5

Q ss_pred             HhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc---hh----hHHHHHHHHHHHHHHHhc
Q 024030           29 PAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK---AM----LTLPLTLSIIPLAILAYR  101 (273)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr---~~----~~~~~~~~~~~~~~~~~~  101 (273)
                      ..+..|..+.+..+  -++ -....++..+.+.+..++.+|+..++..+.++|   +.    +-++..+..++.+++...
T Consensus       305 ssl~~~a~~~v~~~--~~g-~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~  381 (498)
T COG3104         305 SSLNLYADRNVNRQ--IFG-FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLA  381 (498)
T ss_pred             chHHHHHHHhhccc--ccc-eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            45666665543222  122 112346778888999999999999999885544   21    234555555555444432


Q ss_pred             -------cCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-------h
Q 024030          102 -------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-------L  167 (273)
Q Consensus       102 -------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~-------l  167 (273)
                             .+..+.++++...+++++ +.-+..|+..++++...|+.-.+..++.+......|..++..+++.       .
T Consensus       382 ~~~~~~~~~~~s~~~lil~y~l~s~-gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~  460 (498)
T COG3104         382 GIWFGGPSGLVSVWWLVLSYVLQSF-GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAY  460 (498)
T ss_pred             HHhhcCCCCCcCHHHHHHHHHHHHH-HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhh
Confidence                   333457888899999998 7778889999999999999999999999999999988888666652       1


Q ss_pred             ---hhHHHHHHHHHHHHHHHHH
Q 024030          168 ---STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       168 ---~~~~~~~~~~~~~~~~~~~  186 (273)
                         .....|..++...++....
T Consensus       461 ~~~~~~~~F~~~g~v~i~~~~~  482 (498)
T COG3104         461 TAFIEGRVFGTIGVVAIVIGIL  482 (498)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHH
Confidence               3455666666666554444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.81  E-value=7.7e-05  Score=59.16  Aligned_cols=78  Identities=14%  Similarity=0.126  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  133 (273)
                      |-+.....-..++...+.|-++||.|||+.-..-++..+++++ .-.++.   +-++++.|++-|+ ..+...++..++.
T Consensus        75 gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpq---YkVLmVGR~LGGi-aTsLLFSaFEsWl  149 (454)
T KOG4332|consen   75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQ---YKVLMVGRVLGGI-ATSLLFSAFESWL  149 (454)
T ss_pred             ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCc---eEEEeehhhhhhH-HHHHHHHHHHHHH
Confidence            3333344555677788899999999999976554444443322 223444   7889999999998 6566666766654


Q ss_pred             -Hhc
Q 024030          134 -ADN  136 (273)
Q Consensus       134 -~~~  136 (273)
                       .|-
T Consensus       150 iaEH  153 (454)
T KOG4332|consen  150 IAEH  153 (454)
T ss_pred             HHHh
Confidence             443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.81  E-value=0.00089  Score=58.39  Aligned_cols=118  Identities=16%  Similarity=0.200  Sum_probs=97.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHhhhhh-HHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIG-NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (273)
Q Consensus        45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  123 (273)
                      .++++....+...+.......+++.+.. .+...+|-|+.+..|.....+....+++..+   .|.++...++.++ . +
T Consensus       271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~---~w~~~~~~v~~~~-~-~  345 (463)
T KOG2816|consen  271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE---TWMMFAAGVVVAL-A-G  345 (463)
T ss_pred             ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc---chhhhHHHHHHHh-h-c
Confidence            4466666677666666777777776665 7888899999999999999999999999988   7888888887775 3 4


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ...+...+.++...+++++|++.++.+...++..+++|.+-+.+
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            55589999999999999999999999999999999998876655

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.80  E-value=0.00047  Score=57.44  Aligned_cols=119  Identities=20%  Similarity=0.216  Sum_probs=91.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhC--CchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhch
Q 024030           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG--RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (273)
Q Consensus        45 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  122 (273)
                      .++.++.+.|-+.+...+...+.+....+..||..  -+-.+..+.....-..++....+.   ...+.....+..+ ..
T Consensus       291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~---~~~l~~~s~l~sf-~~  366 (451)
T KOG2615|consen  291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART---PVVLYLGSTLKSF-ST  366 (451)
T ss_pred             ccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc---chhhhHHHHHHHH-HH
Confidence            44666677788888888888888888888888877  555555555555555555555555   5566677777776 44


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ....+....++....|.++||..+|+..+...++-.+||.++|.+
T Consensus       367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i  411 (451)
T KOG2615|consen  367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI  411 (451)
T ss_pred             HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence            455578888999999999999999999999999999999999876

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.77  E-value=0.012  Score=50.99  Aligned_cols=198  Identities=12%  Similarity=0.078  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHH-HHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhc--c-------C-----------c-h---
Q 024030           51 YLSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--R-------S-----------I-S---  105 (273)
Q Consensus        51 ~~~g~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~-------~-----------~-~---  105 (273)
                      ....++-+..-+ +.++..++.+++.++..+++++-.-...+....+++++.  +       +           . +   
T Consensus        61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~  140 (509)
T COG3202          61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW  140 (509)
T ss_pred             hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence            344555555555 567888899999999999998876666555555555421  0       0           0 0   


Q ss_pred             -----hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------
Q 024030          106 -----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST-----------  169 (273)
Q Consensus       106 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~-----------  169 (273)
                           ..|...+..+..-+.+.-...-.-+...+|.+..++-.|..++++...+++..++..+..+++-           
T Consensus       141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~  220 (509)
T COG3202         141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKD  220 (509)
T ss_pred             eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHH
Confidence                 0122222222222211112222567788999999999999999999999999988887777621           


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcc
Q 024030          170 ---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (273)
Q Consensus       170 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  246 (273)
                         +..+.+..+...+...+ ...+.+...+++.-               .  .+...+++..+.+....+.++.+.|+|
T Consensus       221 ~~~~~~~~vi~~~~~i~~~l-~~~~~r~il~~~~f---------------~--~~~~~kk~~~k~k~~~~~s~k~i~~Sk  282 (509)
T COG3202         221 LLLQILFIVIVILGIIAILL-YRYINRNVLTDPLF---------------Y--LRAKKKKKKKKLKLGLIESFKMILRSK  282 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcch---------------h--HHHhcccccccccCcHHHHHHHHHhhh
Confidence               11122222222222222 33332221111110               0  000111222333346778888899999


Q ss_pred             hhHHHHHHHHHhccccccce
Q 024030          247 TLSQAAVVAFFSGLSEGGMQ  266 (273)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~  266 (273)
                      .++...+...+++.+...++
T Consensus       283 yL~~ial~vl~Y~v~inLvE  302 (509)
T COG3202         283 YLGAIALLVLAYGVSINLVE  302 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999887765443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.0019  Score=55.87  Aligned_cols=102  Identities=18%  Similarity=0.112  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhc
Q 024030           57 QAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADN  136 (273)
Q Consensus        57 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  136 (273)
                      .++......+..++.+.+.|+.|.|+.+.++..........+.+.++    +.++..-.+.|+ +.+..+...-.+++|.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~----y~~yfssallG~-Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS----YYLYFSSALLGF-GAALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch----HHHHHHHHHhhh-hHHheecccceehhhc
Confidence            34445556677778899999999999999999998888777766554    677888899998 7778788889999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030          137 ISERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      .+++.+.+..++.=.....+.++|..+
T Consensus       131 st~~tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence            999999999998877777777777544

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.68  E-value=0.0035  Score=52.44  Aligned_cols=227  Identities=13%  Similarity=0.060  Sum_probs=116.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh-----hhCC
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGR   80 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~gr   80 (273)
                      .++++..+....+.+++-.+... .+|.+++..        +.|-...+....  ..--...-+.+.++.|     |+||
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak--------~vSyt~~a~fS~--ay~P~sLKllWaPiVDs~y~k~~Gr   97 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK--------GVSYTSQAIFSF--AYWPFSLKLLWAPIVDSVYSKRFGR   97 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC--------Ccchhhhhhhhh--hhhHHHHHHHHHhhhHHHHHHhhcc
Confidence            35567777777777777777666 889888742        111111111110  1112334566888888     9999


Q ss_pred             chhhHHHH-HHHHHHHHHHHhcc------Cch--hHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 024030           81 KAMLTLPL-TLSIIPLAILAYRR------SIS--FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG  151 (273)
Q Consensus        81 r~~~~~~~-~~~~~~~~~~~~~~------~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  151 (273)
                      ||..+.-+ .+....+..+....      +..  .........++.-+ .++..-.+...+.-.+.++++-|-+......
T Consensus        98 rksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnf-laAtQDIAVDgwALtmLs~e~lgyaST~q~V  176 (510)
T KOG3574|consen   98 RKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNF-LAATQDIAVDGWALTMLSRENLGYASTCQSV  176 (510)
T ss_pred             ccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHH-HHhhhhhhhhHHHHHhcCHhhcCchhHHHHH
Confidence            98765322 22222222222111      111  12222223344444 4455667788888888888888777666666


Q ss_pred             HHHHHHHHHHHHHHHh-----------hh---------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 024030          152 VLSASFVCGTLAARFL-----------ST---------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE  211 (273)
Q Consensus       152 ~~~~g~~~gp~~~~~l-----------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (273)
                      +.++|.++|..+--.+           +|         ....++.+.+..+...++.+.-+|...+..+           
T Consensus       177 g~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~-----------  245 (510)
T KOG3574|consen  177 GQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE-----------  245 (510)
T ss_pred             HHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh-----------
Confidence            6666666553221111           11         1223344444444444434433332222111           


Q ss_pred             CcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeee
Q 024030          212 TEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFL  270 (273)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (273)
                                     +.....+...+.++.+.+-|..+.++......-+++++-+...+
T Consensus       246 ---------------e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~  289 (510)
T KOG3574|consen  246 ---------------ELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTS  289 (510)
T ss_pred             ---------------hhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccc
Confidence                           00111112233444466778888888888888777776655443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.61  E-value=0.00057  Score=58.22  Aligned_cols=104  Identities=16%  Similarity=0.144  Sum_probs=75.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhcc--Cc----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChh---hHHHHHHHHHHH
Q 024030           82 AMLTLPLTLSIIPLAILAYRR--SI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISER---QRASAFGILLGV  152 (273)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~  152 (273)
                      |++.++.++..++.+++.++.  ..    ...+.++++..+.++ +.|..-+...++.+|-++++   +|.+.+.+++.+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            456777788888877744322  11    123567788888888 55666699999999998765   577888899999


Q ss_pred             HHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030          153 LSASFVCGTLAARFL----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       153 ~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~  186 (273)
                      .++|..+++.+.+++    +|...|.+.++..+++.+.
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence            999999999888877    6888888887777666554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PTZ00207 hypothetical protein; Provisional

Probab=97.59  E-value=0.00092  Score=59.99  Aligned_cols=173  Identities=12%  Similarity=0.023  Sum_probs=106.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc-----
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK-----   81 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr-----   81 (273)
                      +.++|.+++..++.......+..-+.++.+..-+.+.++ ..+.    ...+.+++.+++|.+..|.++...-+|     
T Consensus       352 ~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~-~~~~----~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r  426 (591)
T PTZ00207        352 TARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDD-ALNT----LLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDR  426 (591)
T ss_pred             chhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCc-ccee----eehhhhhHHHHhhHHHHHHHHHHHHhhccccc
Confidence            457888888887766555555566666665542221111 0011    134556777778888788776222221     


Q ss_pred             ---hhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 024030           82 ---AMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV  158 (273)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  158 (273)
                         +..+.....+.++.+++.+.-.   ...+++.-++.|+ +.|..++...+.++|++. ++-|+-..+......+|..
T Consensus       427 ~prt~~l~~~~~~~~~~lll~~~~p---~~~L~~~~~lvg~-~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~  501 (591)
T PTZ00207        427 VPITIALFIPSVCIITMLTLFLTLP---KAALPLPYFIAAF-ANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAI  501 (591)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHCC---ccHhHHHHHHHHH-HhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHH
Confidence               2222222224444444444433   2468888999998 778888999999999999 8888877777777777765


Q ss_pred             HH-HHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHH
Q 024030          159 CG-TLAARFLS-----------------TTSAFQAATIVSMLAAAYMRV  189 (273)
Q Consensus       159 ~g-p~~~~~l~-----------------~~~~~~~~~~~~~~~~~~~~~  189 (273)
                      +- -.+.|.+.                 .+.+|.+.++++..+.+....
T Consensus       502 ~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        502 FLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            54 34455441                 267788888888777666443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.55  E-value=0.0024  Score=55.24  Aligned_cols=38  Identities=8%  Similarity=-0.071  Sum_probs=24.8

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp  161 (273)
                      ..-.++..+.-.+.++++++.|..-...+.++|.+++-
T Consensus       134 TQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~  171 (544)
T PF13000_consen  134 TQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSF  171 (544)
T ss_pred             cCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHH
Confidence            33346667777777888887776666666666665553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.0066  Score=52.64  Aligned_cols=153  Identities=19%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhh---hhCCchhhH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD---QYGRKAMLT   85 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~grr~~~~   85 (273)
                      ++..+....+..+..........|..+.-....+    .-+....+.......++..+++.+.+.+.+   |+||++.+.
T Consensus       241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~----~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~  316 (461)
T KOG3098|consen  241 KMLLLFPFFFYTGLETSFWISIYPTCISFTRKLG----SNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL  316 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcc----CcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh
Confidence            3444444444444444555555555543211111    112233344444556666777777777765   578899888


Q ss_pred             HHHHHHHHHHHHHHhc-cCc--------------hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAYR-RSI--------------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL  150 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  150 (273)
                      ++..+..+..++.... +..              +.....++..++.|+ +.+...+..+.++.+.. +++|.++.++..
T Consensus       317 ~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~-~D~~~~t~~~~ii~~~~-~~~~~~~fsi~k  394 (461)
T KOG3098|consen  317 IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF-GDACFNTQRYVIIALLY-PDDRAQAFSLFK  394 (461)
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh-HHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence            8888777766554432 111              124566777788898 77788888999999999 578889999998


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 024030          151 GVLSASFVCGTLAARFL  167 (273)
Q Consensus       151 ~~~~~g~~~gp~~~~~l  167 (273)
                      .-..++..++-+.....
T Consensus       395 fyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  395 FYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHHHHHHHHHhhhhhhh
Confidence            88888777665544433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.33  E-value=0.00033  Score=59.55  Aligned_cols=116  Identities=10%  Similarity=0.073  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhHHhhhhCCc-hhhHHHHHHHHHH-HHHHHhccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK-AMLTLPLTLSIIP-LAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (273)
Q Consensus        51 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  128 (273)
                      ...|++.....++.++++...|.+.||.+.- .+.+.......++ ..+..........+.++..-.+.|.++.+.. |.
T Consensus       301 ~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~-Pi  379 (480)
T KOG2563|consen  301 VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYL-PI  379 (480)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCC-Cc
Confidence            4568888888899999999999999998764 4444544444444 2222222222223555666666676444444 67


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030          129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ..-+..|.+-|..-+...|+.+...++-+++-.++-+..
T Consensus       380 g~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~  418 (480)
T KOG2563|consen  380 GFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGIL  418 (480)
T ss_pred             ceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHH
Confidence            777777876555555667777666555555555555544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.32  E-value=0.029  Score=48.57  Aligned_cols=140  Identities=14%  Similarity=0.028  Sum_probs=93.7

Q ss_pred             HHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH---hccC
Q 024030           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA---YRRS  103 (273)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~~~~  103 (273)
                      ....+-.|+...        +.+....|..-+...+..+.+...+.++.+|+|..+.=.++......+..+..   +.+.
T Consensus       277 f~~lmt~yl~~~--------G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~  348 (432)
T PF06963_consen  277 FGGLMTAYLKSQ--------GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPG  348 (432)
T ss_pred             CcHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            345666666443        77888899999999999999999999999999998887777665544433322   2222


Q ss_pred             c----hhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024030          104 I----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQA  175 (273)
Q Consensus       104 ~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~~~~~  175 (273)
                      .    .+...++.+-++.=+ |--.+--+..-++.|..|+++|+...|.-....++...+-..++-......-|..
T Consensus       349 ~~~~~~s~~~l~~gi~~SR~-GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~  423 (432)
T PF06963_consen  349 SPFSSISAYLLLGGIALSRI-GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGW  423 (432)
T ss_pred             CCchhhHHHHHHHHHHHHHH-HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcCh
Confidence            1    122333333333333 2122334667788999999999999999999999888777666554443333333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.27  E-value=0.054  Score=48.31  Aligned_cols=119  Identities=13%  Similarity=0.006  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH-HHHH-HHHHH-HHHHhccCchhH-HHHHHHHHHHhhhch
Q 024030           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL-PLTL-SIIPL-AILAYRRSISFF-YAYYALRTLTAMVCE  122 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~-~~~~~-~~~~~~~~~~~~-~~~~~~~~l~g~~~~  122 (273)
                      +.+....+.+.+++..+..+|+.+++++.++.-++....- +..+ ..++. ++.......... ...+...++.++ ..
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-l~  124 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL-LI  124 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            5556677888889999999988888887644333322111 1111 11111 111111100001 112222333444 33


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      |...|....+..+... ++-++..|-.+....+|.++|+++.+.+
T Consensus       125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence            3333544444443222 2345667778888888888887776654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.00  E-value=0.00046  Score=59.98  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH-HHHHHHH
Q 024030           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-TLSIIPL   95 (273)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~-~~~~~~~   95 (273)
                      .++.......+.|.++.|..+        +++++.+.|.+...-.+..+++.|++|.++||+.+||.++++. +....+.
T Consensus        20 ~~~~~~~~g~l~pll~vy~kQ--------LGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~   91 (618)
T KOG3762|consen   20 YLFFGARFGSLFPLLAVYFKQ--------LGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTAT   91 (618)
T ss_pred             eeeeeecccccchHHHHHHHH--------cCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            344455667788999999755        4889999999999999999999999999999999887776654 4455555


Q ss_pred             HHHHhcc
Q 024030           96 AILAYRR  102 (273)
Q Consensus        96 ~~~~~~~  102 (273)
                      +++.+.+
T Consensus        92 fll~fv~   98 (618)
T KOG3762|consen   92 FLLVFVP   98 (618)
T ss_pred             Hheeecc
Confidence            5555543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.84  E-value=0.09  Score=44.98  Aligned_cols=108  Identities=14%  Similarity=0.179  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHH--HHH---HHHHhccCchhHHHHHHHHHHHhhhchhhHH
Q 024030           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI--IPL---AILAYRRSISFFYAYYALRTLTAMVCEGSIN  126 (273)
Q Consensus        52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  126 (273)
                      +.-+....+.+|.++++--...+  |+  |++.+...+-.+  +..   ..+-+.++   .|.+++..+..|+ .+|..+
T Consensus       282 ~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGL-lGGa~Y  353 (402)
T PF02487_consen  282 QYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGL-LGGASY  353 (402)
T ss_pred             HHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-hhhHHH
Confidence            44555566677766665433221  33  444433332222  111   12234455   7888888888998 556666


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024030          127 CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      ......+.|-.|+++|-.++|....+.++|..++.+++-.+
T Consensus       354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            78888888889999999999999999999998888777655

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.73  E-value=0.016  Score=50.45  Aligned_cols=147  Identities=7%  Similarity=0.050  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH-hccCc------hhHHHHHHHHHHHhhh
Q 024030           48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA-YRRSI------SFFYAYYALRTLTAMV  120 (273)
Q Consensus        48 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~l~g~~  120 (273)
                      .+....|.+..+..++.+++..+..++--+..-|+++....+..++..+.-. +....      ...+..+.--++..+ 
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~-  330 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV-  330 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH-
Confidence            5667778877778888888888888877777888888777766655544322 11110      001222223334443 


Q ss_pred             chhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHH
Q 024030          121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS------------TTSAFQAATIVSMLAAAYMR  188 (273)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~------------~~~~~~~~~~~~~~~~~~~~  188 (273)
                      ..+..+-+...+++|..|+..-|+..++..+..++|..++..++..+.            -++...+..+..++...+ .
T Consensus       331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~l-l  409 (433)
T PF03092_consen  331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPL-L  409 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH-H
Confidence            333444567778999999999999999999999999988888877761            123344444444444333 4


Q ss_pred             HHhcCCCC
Q 024030          189 VFLKDDVP  196 (273)
Q Consensus       189 ~~~~~~~~  196 (273)
                      ..+|+.++
T Consensus       410 ~lLp~~~~  417 (433)
T PF03092_consen  410 FLLPPQKR  417 (433)
T ss_pred             HHcCCCch
Confidence            55666444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.58  E-value=0.011  Score=49.05  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             hHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHH
Q 024030           66 VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASA  145 (273)
Q Consensus        66 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~  145 (273)
                      +.-.+.=.+.|-...|++++.-.+.......++.+.++   .+.+=+.-+..|. ..+ ...+.++++-+..+++++.++
T Consensus        57 v~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s---V~~mQvlE~FyG~-~tA-aEIAYysYIYs~Vd~~~Yqrv  131 (433)
T KOG3810|consen   57 VGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS---VKAMQVLEFFYGP-ATA-AEIAYYSYIYSKVDPEMYKRV  131 (433)
T ss_pred             HHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC---chheeeehhhcCh-HHH-HHHhhhheeeeecCHHHHHHH
Confidence            33334445899999999998877766666677777777   6777677777776 333 336788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 024030          146 FGILLGVLSASFVCGTLAARFL  167 (273)
Q Consensus       146 ~~~~~~~~~~g~~~gp~~~~~l  167 (273)
                      .|-.....-.|...|..++..+
T Consensus       132 t~y~RaA~L~g~~~g~vlaQlL  153 (433)
T KOG3810|consen  132 TGYCRAAFLVGKFVGSVLAQLL  153 (433)
T ss_pred             HHHhHHHHHHHhHHHhHHHHHH
Confidence            9999888888877777776665

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.56  E-value=0.0077  Score=55.05  Aligned_cols=81  Identities=9%  Similarity=0.064  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH-HHHhHhhhhhHHhhhhCC--chhhH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYGR--KAMLT   85 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~gr--r~~~~   85 (273)
                      .++...+..++.....+....++|.|+++.       ++.+...+|++.+...+ +.+++.++.|+++||+++  |+.+.
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~-------~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~  403 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQ-------YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAY  403 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHH
Confidence            445555666666777778888999999764       36667778888777665 567899999999999984  45666


Q ss_pred             HHHHHHHHHHH
Q 024030           86 LPLTLSIIPLA   96 (273)
Q Consensus        86 ~~~~~~~~~~~   96 (273)
                      .+.+...++.+
T Consensus       404 ~~~~~~~~~~~  414 (633)
T TIGR00805       404 FAICLSTLSYL  414 (633)
T ss_pred             HHHHHHHHHHH
Confidence            66666555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.78  E-value=0.22  Score=44.92  Aligned_cols=167  Identities=17%  Similarity=0.143  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchhhHHHHHH
Q 024030           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPLTL   90 (273)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~   90 (273)
                      .......+...+++.+..-+-.|+.+.+       +.....+.-....+.-......+.++.++|-| ||-+++.++.++
T Consensus        41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~-------~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i  113 (571)
T KOG1237|consen   41 FILGNEVLERLAFFGLVSNLVTYLTLEL-------HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI  113 (571)
T ss_pred             HHHHHHHHHHHhHhcchhHHHHHHHHHh-------ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3344444555555555555566665532       12112223333444555667778899999975 788888888887


Q ss_pred             HHHHHHHHHhcc----------------------CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCC---h-hhHH-
Q 024030           91 SIIPLAILAYRR----------------------SISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS---E-RQRA-  143 (273)
Q Consensus        91 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---~-~~r~-  143 (273)
                      ..++..+.....                      +......++...-+..+ +.|..-+...++-+|-++   + +.+. 
T Consensus       114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~-G~gg~r~~~~~fGadQfd~~~~~~~~~~  192 (571)
T KOG1237|consen  114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIAL-GAGGIRPCLLAFGADQFDELDPVEVKGI  192 (571)
T ss_pred             HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHhee-ccCCCCCcchhhcccccCccCcchhhCc
Confidence            777754443211                      00012345555555555 445555888888888887   2 2223 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030          144 -SAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       144 -~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~  186 (273)
                       ..+.++....+.|..++-.+.-+.    +|...|.+..+..+++.++
T Consensus       193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~i  240 (571)
T KOG1237|consen  193 PSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILI  240 (571)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHH
Confidence             677788888888888886655444    7877777766655554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.53  E-value=0.053  Score=46.73  Aligned_cols=111  Identities=11%  Similarity=-0.015  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhHhhhhhHHhhhhCCc----hhhHHHHHHHHH-------HHHHHHhccCchhHHHHHHHHHHHhhhchh
Q 024030           55 FQQAIIGLGTLVMMPVIGNLSDQYGRK----AMLTLPLTLSII-------PLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (273)
Q Consensus        55 ~~~~~~~~~~~~~~~~~g~l~dr~grr----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  123 (273)
                      ++..+...+..++..++|.++||+-|+    ....+.-+....       ...+......  .........++.|....-
T Consensus       287 ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~--~s~~~~~il~~~g~~~~~  364 (493)
T KOG1330|consen  287 IFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS--SSMIFGLILFLVGETISW  364 (493)
T ss_pred             hhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHh
Confidence            334556777788888899999984321    112221111111       1111111222  122333344444542222


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 024030          124 SINCLALAYVADNISERQRASAFGILLGVLSAS-FVCGTLAARFL  167 (273)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~gp~~~~~l  167 (273)
                      ...+.......|..|+++|..+.++......+- ..-+|.+.|.+
T Consensus       365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGil  409 (493)
T KOG1330|consen  365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGIL  409 (493)
T ss_pred             cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhH
Confidence            333445557788999999999999987666554 44445466655

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.67  E-value=0.29  Score=40.18  Aligned_cols=132  Identities=12%  Similarity=0.054  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  133 (273)
                      |.+.....+..++..+.+..+.||+---.-+.+...+.+.+..+.+++++   .++-+.+..+..+ +.|..- ...-..
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSi-ssGlGE-iTFL~l  139 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASI-SSGLGE-ITFLAL  139 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhh-cCCcce-eehhhh
Confidence            55566667777777888888899875443345556667777777778777   6666666666555 444332 222222


Q ss_pred             HhcCChhhHHHHHHHHHHHHHHHHHHHHH----HHHHh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          134 ADNISERQRASAFGILLGVLSASFVCGTL----AARFL--STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~~gp~----~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +...++.    ..+-++.+.+.++.+|..    +..+.  ..+.+..+...+.++.....++.++++
T Consensus       140 ss~Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  140 SSRYPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             hccCCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence            2333322    122233333333444422    22212  346677777777766655545555543

>TIGR00806 rfc RFC reduced folate carrier

Probab=94.19  E-value=2.4  Score=37.48  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH--HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHH
Q 024030           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL--TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA  129 (273)
Q Consensus        52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  129 (273)
                      ..|.+.++..+.+.+.++..|++-.++.+---+.++.  ++.+...+++...++   .|..++..++.+. ...+..+..
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~---Iw~~Y~~yvlf~~-~y~flitia  374 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHD---IWVLYVTYVLFRG-IYQFLVPIA  374 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccc---hHHHHHHHHHHHH-HHHHHHHHH
Confidence            4577777778888889999999877774433333333  333334445556666   9999999999886 566666788


Q ss_pred             HHHHHhcCChhhHHHHHHHHHHHH
Q 024030          130 LAYVADNISERQRASAFGILLGVL  153 (273)
Q Consensus       130 ~~~~~~~~~~~~r~~~~~~~~~~~  153 (273)
                      ..-+++....+.-+..+|+..+..
T Consensus       375 ~~~iA~~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       375 TFQIASSLSKELCALVFGINTFVA  398 (511)
T ss_pred             HHHHHHHhcccceEEEEecHHHHH
Confidence            888888887777787777765543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.05  E-value=2.9  Score=36.58  Aligned_cols=112  Identities=12%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhHHhhhhCCc--hhhHHH--HHHHHHHHHHHHhcc------CchhHHHHHHHHHHHhhhc
Q 024030           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRK--AMLTLP--LTLSIIPLAILAYRR------SISFFYAYYALRTLTAMVC  121 (273)
Q Consensus        52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~  121 (273)
                      ..-.....+.++-++|..+..+. ..-++|  ++++.+  -++++-..+++..-+      --..-+..++..++.|+ .
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl-t  385 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF-S  385 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH-h
Confidence            33455667788888888755432 111223  332221  122222222222211      00124666677888888 7


Q ss_pred             hhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030          122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                      .|...+....+..+..++++|-.+..+...+..+|..+|..++-
T Consensus       386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777888888899999999988888888888888877766543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.73  E-value=1.7  Score=35.21  Aligned_cols=132  Identities=16%  Similarity=0.099  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHhhhhCCc--hhhHHHHHHHHHHHHHHH----hccCchhHHHHHHHHHHHhhhchhhHHH
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRK--AMLTLPLTLSIIPLAILA----YRRSISFFYAYYALRTLTAMVCEGSINC  127 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~~~~~~~~~  127 (273)
                      |.+.+.+.++.++++-+..++..|-..|  ..+.+..+..++...+..    .+++..+...-+++..+.-. +.|.++|
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~-cvGlfwP  363 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEA-CVGLFWP  363 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHH-HHhhcch
Confidence            7888888999999999998888887766  334444444444333322    22332222222333333333 5567888


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHH
Q 024030          128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLA----ARFLSTTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       128 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~----~~~l~~~~~~~~~~~~~~~~~~~  186 (273)
                      ...-+-.+..|++.|+..+.++..--++-..++-..    +--.+-|..|-++.++..++.+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            888888999999999988887765444433322111    00114466777777666555444

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=93.10  E-value=0.43  Score=41.94  Aligned_cols=136  Identities=11%  Similarity=0.148  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhhHHh-hhhCCchhhHHHHHHHHHHHHHHHh----ccC------------------
Q 024030           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLS-DQYGRKAMLTLPLTLSIIPLAILAY----RRS------------------  103 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~-dr~grr~~~~~~~~~~~~~~~~~~~----~~~------------------  103 (273)
                      ..+....|...++..+.........+... -++.+|+.+..+++.......+...    ...                  
T Consensus       298 ~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~  377 (488)
T KOG2325|consen  298 SEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYS  377 (488)
T ss_pred             chHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccch
Confidence            34455667766666666666555555544 3445566666664444443332221    100                  


Q ss_pred             ------chhHHHHHHH-HHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 024030          104 ------ISFFYAYYAL-RTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA  172 (273)
Q Consensus       104 ------~~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~~~  172 (273)
                            ..+.+.++.. -++.|. +.-.......+.-+|...|++++...+.+......+..+||++....    |.++.
T Consensus       378 wc~~~~~v~~~~~l~~~i~~~g~-~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v  456 (488)
T KOG2325|consen  378 WCDTTTAVPLILYLISFIVVFGI-AFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPV  456 (488)
T ss_pred             hhccCcccChhhheeehhheecc-ccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHH
Confidence                  0012333333 233454 33344456788889999999999999999999999999998887655    55665


Q ss_pred             HHHHHHHHHHH
Q 024030          173 FQAATIVSMLA  183 (273)
Q Consensus       173 ~~~~~~~~~~~  183 (273)
                      ..+..+..++.
T Consensus       457 ~~~~~~~~l~~  467 (488)
T KOG2325|consen  457 WIILLCLLLVV  467 (488)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=92.97  E-value=0.028  Score=50.29  Aligned_cols=151  Identities=11%  Similarity=0.156  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH-HHHhHhhhhhHHhhhhC--CchhhH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYG--RKAMLT   85 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g--rr~~~~   85 (273)
                      .+....+.............+++|.|++.       +++.++..++++..+..+ +..++.+++|.+..|+.  .|+...
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~-------QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~  378 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLES-------QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAK  378 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHH
Confidence            34444555566666777788899999955       456666677766655444 56788889999999875  344444


Q ss_pred             HHHHHHHHHHHH---HHh--cc----------C------------------------------------chhHHHHHHHH
Q 024030           86 LPLTLSIIPLAI---LAY--RR----------S------------------------------------ISFFYAYYALR  114 (273)
Q Consensus        86 ~~~~~~~~~~~~---~~~--~~----------~------------------------------------~~~~~~~~~~~  114 (273)
                      ...+...++.+.   ..+  .+          .                                    ...+..+++..
T Consensus       379 ~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~  458 (539)
T PF03137_consen  379 FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILL  458 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHH
Confidence            444333333222   100  00          0                                    00122333333


Q ss_pred             HHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 024030          115 TLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVL-SASFVCGTLAARFL  167 (273)
Q Consensus       115 ~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~gp~~~~~l  167 (273)
                      ++..+ ..+.........+-+.+|+++|+.+.|+..... -+|.+=||++-|.+
T Consensus       459 ~~~~~-~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~i  511 (539)
T PF03137_consen  459 FILSF-FTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAI  511 (539)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHH-HHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHH
Confidence            33222 223333445555667888999999999986654 45777888887766

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=92.73  E-value=2.3  Score=36.64  Aligned_cols=97  Identities=21%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHH--HHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT--LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (273)
Q Consensus        51 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  128 (273)
                      ...|.+.++..+.+.++++..|.+..++++-.-+.++..  +.+...+++...++   .|..++..++.+. ......+.
T Consensus       285 vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~---Iwv~Y~~yIif~~-~y~fliTi  360 (412)
T PF01770_consen  285 VYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGN---IWVCYAGYIIFRS-LYMFLITI  360 (412)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHHHHHH
Confidence            345778888888888999999999777777554444433  33344455566666   8999998888875 44455566


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHH
Q 024030          129 ALAYVADNISERQRASAFGILLG  151 (273)
Q Consensus       129 ~~~~~~~~~~~~~r~~~~~~~~~  151 (273)
                      ...-++....+|.-+..+|+..+
T Consensus       361 A~~qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  361 ASFQIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHHHHhccccceeeeeeeHHH
Confidence            66667776666666666655544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.17  E-value=2.8  Score=35.99  Aligned_cols=129  Identities=11%  Similarity=0.128  Sum_probs=75.7

Q ss_pred             HhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHH-HHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHH----
Q 024030           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAI-IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA----   99 (273)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~----   99 (273)
                      .......|.+..+.    +.+...+....-+.... +.+.-.+|.+...++-++- ||...+. .+.-.+..-++.    
T Consensus       260 ~VTLsiFPg~~~~~----~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~-v~lR~lfiPlF~~cn~  333 (406)
T KOG1479|consen  260 FVTLSIFPGFCSEV----KSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIP-VLLRLLFIPLFLLCNY  333 (406)
T ss_pred             eeeeEecchhhccc----ccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHH-HHHHHHHHHHHHHhcc
Confidence            33445677776653    21212234455555566 7888888866666654444 3333332 222222222222    


Q ss_pred             -----hccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024030          100 -----YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus       100 -----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                           ...+   -++.+....+.|+ ..|-..+....+.++..+++++-.+..+.......|...|..+
T Consensus       334 ~~~~v~~~~---~~~~~~l~~~lgl-snGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  334 PPLPVVFES---DGWFIFLMSLLGL-SNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             CCCCceecC---chHHHHHHHHHHh-ccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                 1233   4667777888888 7787778888888999988888776666666666666655444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=91.11  E-value=3.8  Score=28.45  Aligned_cols=39  Identities=31%  Similarity=0.347  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHH
Q 024030           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (273)
Q Consensus        52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~   90 (273)
                      ..|.......++..++..+.|.+.|..|.+..+......
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL  126 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence            345555666777777777777777777766655544433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=89.47  E-value=3.9  Score=35.69  Aligned_cols=112  Identities=9%  Similarity=0.043  Sum_probs=65.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhc--CCCCcc--------hhHHHHHHHHHHHHHHHHHHhHhhhhhHH
Q 024030            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMAL--CPGLDE--------CSLAIYLSGFQQAIIGLGTLVMMPVIGNL   74 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~g~l   74 (273)
                      +.+|.++.+++..++..++.....-+...+.-+.+  ++++.+        ++.....-.+=..++.+...+.+....++
T Consensus       276 ~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l  355 (498)
T KOG0637|consen  276 VMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKL  355 (498)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            34566666777777776665544444444433311  111111        11111122333466777888889999999


Q ss_pred             hhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhh
Q 024030           75 SDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAM  119 (273)
Q Consensus        75 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  119 (273)
                      .||+|-|+.+..+...+.++..+.+..++   .+.....+-..|+
T Consensus       356 ~~~~g~r~~y~~~~~~f~~~~~~~gl~~~---~~~~~~~~~~~G~  397 (498)
T KOG0637|consen  356 SRKFGTRKRYWGGVNAFGLATGLAGLVLN---TYVVLSHRSTAGI  397 (498)
T ss_pred             HHhcCcceEEeehhHHHHHHHHHHhhhhh---HHHHHHHHhhcce
Confidence            99999766666666656666666665555   5666666666664

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.49  E-value=16  Score=31.98  Aligned_cols=101  Identities=9%  Similarity=0.002  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH-HHh----ccCchhHHHHHHHHHHHhhhchhhHHHH
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI-LAY----RRSISFFYAYYALRTLTAMVCEGSINCL  128 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~l~g~~~~~~~~~~  128 (273)
                      .+......+..++..+..-.+..|+..|.=+..+++...+..+. ..+    .+....++..++.-++.|+ +.+.....
T Consensus        48 ~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~-~~~~~q~s  126 (437)
T TIGR00939        48 TYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINS-GMALLQGS  126 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHh-hhhhhccc
Confidence            34444555666666666666667766543334443322222211 111    1121235566666677776 55666555


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024030          129 ALAYVADNISERQRASAFGILLGVLSASFVCG  160 (273)
Q Consensus       129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (273)
                      ..++.+ .+|++.    ++....+.+++++++
T Consensus       127 ~~gla~-~fp~~~----~~a~~~G~g~aGv~~  153 (437)
T TIGR00939       127 LFGLAG-VFPSTY----SSAVMSGQGLAGVLT  153 (437)
T ss_pred             chhhcc-cCCHHH----HHHHHhcchhHHHHH
Confidence            555555 456443    333444444444444

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=87.00  E-value=4.5  Score=33.55  Aligned_cols=66  Identities=15%  Similarity=0.111  Sum_probs=48.7

Q ss_pred             HHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           96 AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                      .++.+.++   .|..++.-+..|+.+ |..+....--+.+-.++++|--+++......++|..++.+++-
T Consensus       334 a~~~ftps---i~ivf~lI~~EGLlG-GasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  334 AWYWFTPS---IWIVFALILFEGLLG-GASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHHHhccH---HHHHHHHHHHHhhcC-chHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            34556666   888888888899844 4444566666666677799999999998888888887766653

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.88  E-value=3.2  Score=38.49  Aligned_cols=81  Identities=10%  Similarity=0.160  Sum_probs=51.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH-HHHhHhhhhhHHhhhhC--Cchhh
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYG--RKAML   84 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g--rr~~~   84 (273)
                      +.+....++..+..........++|.|++.+.       +.+.+.+..+.+...+ +..++..++|.+..|+.  .|...
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qf-------g~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a  464 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQF-------GISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAA  464 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHc-------CCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHH
Confidence            34555566777777778888899999997754       5555555555543333 34566677899999874  44454


Q ss_pred             HHHHHHHHHHH
Q 024030           85 TLPLTLSIIPL   95 (273)
Q Consensus        85 ~~~~~~~~~~~   95 (273)
                      .+..+...+..
T Consensus       465 ~~~~~~~~l~l  475 (735)
T KOG3626|consen  465 KFVIVCSVLSL  475 (735)
T ss_pred             HHHHHHHHHHH
Confidence            44444444433

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=81.28  E-value=22  Score=30.25  Aligned_cols=97  Identities=23%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH--HHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHH
Q 024030           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL--TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA  129 (273)
Q Consensus        52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  129 (273)
                      ..|..-++..+.+.++.+..|.+.-++.|..-++++.  +..+...+++...++   .|+.++..++... ......+..
T Consensus       272 yNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~---Iw~~Ya~yvlfr~-~y~l~itiA  347 (433)
T KOG3810|consen  272 YNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQH---IWVCYAGYVLFRV-IYQLTITIA  347 (433)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccc---eehhhhhHHHHHh-hHhhhhhHH
Confidence            4467777778888899999999988888775444433  333333444445555   8888888888765 445555677


Q ss_pred             HHHHHhcCChhhHHHHHHHHHHH
Q 024030          130 LAYVADNISERQRASAFGILLGV  152 (273)
Q Consensus       130 ~~~~~~~~~~~~r~~~~~~~~~~  152 (273)
                      ..-+++..+.|.-|..+|+..+.
T Consensus       348 ~~~iA~nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  348 TFQIARNLSSELFGLVFGINTFV  370 (433)
T ss_pred             HHHHHHhhhhhhheeeeehHHHH
Confidence            77777777777777777765543

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.16  E-value=14  Score=25.06  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhHHhhhh
Q 024030           52 LSGFQQAIIGLGTLVMMPVIGNLSDQY   78 (273)
Q Consensus        52 ~~g~~~~~~~~~~~~~~~~~g~l~dr~   78 (273)
                      ..++-.+.-+++..+.....|++.|||
T Consensus        43 ~~a~klssefIsGilVGa~iG~llD~~   69 (116)
T COG5336          43 AQAFKLSSEFISGILVGAGIGWLLDKF   69 (116)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334555666777788888889999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 31/144 (21%)

Query: 8   KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGL--DECSLAIYLSGFQQAIIGLGTL 65
           K L    +T         +     T +++      L  DE   ++ L         L   
Sbjct: 267 KIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDL--- 318

Query: 66  VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI 125
              P          R+ + T P  LSII    +    +    + +     LT ++ E S+
Sbjct: 319 ---P----------REVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTII-ESSL 363

Query: 126 NCLALAYVADNISERQRASAFGIL 149
           N L      +    R+      + 
Sbjct: 364 NVL------EPAEYRKMFDRLSVF 381

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.92
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.92
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.91
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.87
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.84
2xut_A	524	Proton/peptide symporter family protein; transport	99.81
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.7
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.64
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.62
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.48
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.44
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.13
2xut_A	524	Proton/peptide symporter family protein; transport	98.79

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.92  E-value=1.4e-24  Score=186.88  Aligned_cols=242  Identities=12%  Similarity=0.056  Sum_probs=178.8

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      .+....+..+..........+.+|.+.++.         .+..+.|++.+++.++..++++++|+++||+|||+++..+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQG---------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHTTSST---------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            344455566666677777788888875443         33445788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh----ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           89 TLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        89 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                      ++..++.+++.+    .++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..++|.++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  175 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF  175 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888    777   8889999999998 66667789999999999999999999999999999999999998


Q ss_pred             HHh----h-hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHH
Q 024030          165 RFL----S-TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (273)
Q Consensus       165 ~~l----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (273)
                      +.+    + |+++|++.+++.++..++..+..||++++.+.+++.+...+    ..+   +.+ .++++....++.  ..
T Consensus       176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~-~~~~~~~~~~~~--~~  245 (451)
T 1pw4_A          176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND----YPD---DYN-EKAEQELTAKQI--FM  245 (451)
T ss_dssp             HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------------CCTHH--HH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc----ccc---cch-hhhhcccccccc--hH
Confidence            875    6 99999999888877776666777876554332211100000    000   000 000001111111  12


Q ss_pred             HHHhhcchhHHHHHHHHHhccccccceeeeeccC
Q 024030          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      +..+++|.++...+..++......+...++|.|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (451)
T 1pw4_A          246 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL  279 (451)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999888888888877764

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.92  E-value=1.8e-23  Score=179.36  Aligned_cols=224  Identities=14%  Similarity=0.126  Sum_probs=173.6

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHH
Q 024030            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (273)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~   88 (273)
                      .+.......+...+......+.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||++++.+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~   98 (438)
T 3o7q_A           27 PFALLCSLFFLWAVANNLNDILLPQFQQAF--------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH
Confidence            344445555666666777888888876553        555677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           89 TLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (273)
Q Consensus        89 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~  165 (273)
                      ++..++.+++   ...++   ++.+++.|++.|+ +.+...+...++++|++|+++|++++++.+...++|..++|.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  174 (438)
T 3o7q_A           99 FLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_dssp             HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888   67777   9999999999998 667777899999999999999999999999999999999999988


Q ss_pred             Hhh------------------------------hHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCCCCCCCCCCCCCcc
Q 024030          166 FLS------------------------------TTSAFQAATIVSMLAAAYMRVF-LKDDVPNDDDDDLTRPIITEETEG  214 (273)
Q Consensus       166 ~l~------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  214 (273)
                      .+.                              |+++|.+.++...+..++..+. .||++++++++             
T Consensus       175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------------  241 (438)
T 3o7q_A          175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------------  241 (438)
T ss_dssp             HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-------------
T ss_pred             HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-------------
Confidence            874                              8999987776665554442221 22222111110             


Q ss_pred             cccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          215 VNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                                 ++    .++.++..+.++|+|.++...+..++....+.....++|.|
T Consensus       242 -----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (438)
T 3o7q_A          242 -----------AK----QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY  284 (438)
T ss_dssp             -----------SS----TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------cc----ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       00    01223344457889999999999999888888887777766

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.91  E-value=1.3e-23  Score=176.95  Aligned_cols=219  Identities=15%  Similarity=0.102  Sum_probs=175.5

Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHH
Q 024030           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (273)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~   91 (273)
                      ......+....+.....+.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   75 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDL--------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIF   75 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTS--------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            445566777778888889999886543        556677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 024030           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l----  167 (273)
                      .++..+..+.++   ++.+++.|++.|+ +.+...+...+++.|.+|+++|++++++.+...++|..++|.+++.+    
T Consensus        76 ~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  151 (375)
T 2gfp_A           76 MLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW  151 (375)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            999988888877   8999999999998 66777789999999999999999999999999999999999999887    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcch
Q 024030          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (273)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  247 (273)
                      +|++.|.+.++..++..+...+..||++++++++                        ++..+   +.+    ..+|+|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~---~~~----~~~~~~~  200 (375)
T 2gfp_A          152 NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR------------------------TRLLT---SYK----TLFGNSG  200 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC------------------------CCTTT---CST----HHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc------------------------ccHHH---HHH----HHhcCcc
Confidence            7899998887777666554345566654332210                        00001   112    1456788


Q ss_pred             hHHHHHHHHHhccccccceeeeeccC
Q 024030          248 LSQAAVVAFFSGLSEGGMQASFLVYI  273 (273)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~yl  273 (273)
                      ++...+..++..........++|.|+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (375)
T 2gfp_A          201 FNCYLLMLIGGLAGIAAFEACSGVLM  226 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888774

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.87  E-value=6e-21  Score=166.22  Aligned_cols=182  Identities=15%  Similarity=0.080  Sum_probs=152.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhh-hCCchhhH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~   85 (273)
                      ++.++......+...++.+...+.++.|+++..  .+++++.+..+.|++.+.+.++..+++++.|+++|| +|||+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~   89 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF   89 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            456667777778888888888889999987631  122357777889999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhh--HHHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA  163 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~gp~~  163 (273)
                      .+.++..++.+++.+.++   .+.+++.|++.|+ +.+...+...++++|++|+++  |++++++.+...++|..++|.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  165 (491)
T 4aps_A           90 WGGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI  165 (491)
T ss_dssp             HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence            999999999999988888   8889999999998 667677999999999999988  7788888999999999999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      ++.+    +|+++|++.++..++..++..+..|+.
T Consensus       166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4aps_A          166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT  200 (491)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            9886    899999998777666655544444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.84  E-value=1.8e-21  Score=169.40  Aligned_cols=174  Identities=17%  Similarity=0.183  Sum_probs=135.1

Q ss_pred             HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (273)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~   97 (273)
                      ++..+....+...+|.+.++...+.+.+.+.+....|++.+.+.++.+++++++|+++||+|||+++.++.+++.++.++
T Consensus        22 ~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~  101 (491)
T 4gc0_A           22 LLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVG  101 (491)
T ss_dssp             HHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            34444455566677776555432233344666778899999999999999999999999999999999999999999888


Q ss_pred             HHh------------------ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 024030           98 LAY------------------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (273)
Q Consensus        98 ~~~------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (273)
                      .++                  +++   ++.+++.|++.|+ +.|...+...++++|..|+++|++..++.+....+|..+
T Consensus       102 ~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~  177 (491)
T 4gc0_A          102 SAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL  177 (491)
T ss_dssp             HHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence            774                  456   8999999999998 666677999999999999999999999999999999998


Q ss_pred             HHHHHHHh------------hhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024030          160 GTLAARFL------------STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (273)
Q Consensus       160 gp~~~~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      ++.++...            .|+..+....+..++.. +..+..||+++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~  225 (491)
T 4gc0_A          178 VYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPR  225 (491)
T ss_dssp             HHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHH
T ss_pred             hhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChH
Confidence            88877654            35555555444444333 33667788764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.81  E-value=1.1e-18  Score=153.10  Aligned_cols=177  Identities=16%  Similarity=0.167  Sum_probs=144.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh-CCchh
Q 024030            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAM   83 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-grr~~   83 (273)
                      ++++.++...+..++...+.+...+.+|.|+++..+++. +.+.+..+.|++.+.+.++..++.++.|+++||+ |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSI-PEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC-SSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            345667777888888888888899999999876443110 1125566779999999999999999999999999 99999


Q ss_pred             hHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHH---HHHHHHHHHHH
Q 024030           84 LTLPLTLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI---LLGVLSASFVC  159 (273)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~  159 (273)
                      +..+.++..++.+++.+.+ +   .+.+++.|++.|+ +.+...+...+++.|.+|+++|+++.+.   .+...++|..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~  163 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF  163 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888887 7   8889999999998 6666668999999999999999876666   88899999999


Q ss_pred             HHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 024030          160 GTLAARFL----STTSAFQAATIVSMLAAAY  186 (273)
Q Consensus       160 gp~~~~~l----~~~~~~~~~~~~~~~~~~~  186 (273)
                      ||.+++.+    +|+++|.+.++..++..+.
T Consensus       164 g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  194 (524)
T 2xut_A          164 ASLSMPLLLKNFGAAVAFGIPGVLMFVATVF  194 (524)
T ss_dssp             HHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            99988876    7899998887776655544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.70  E-value=1.5e-18  Score=148.18  Aligned_cols=165  Identities=16%  Similarity=0.125  Sum_probs=107.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.++......+....+.....+++|.|+++..       +.+..+.|++.+.+.++..++++++|+++||+|||++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN-------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTT-------CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            445566666666677777888899999987643       3344556888999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH---HhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGT  161 (273)
Q Consensus        87 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~gp  161 (273)
                      +..+..+....+   .+.+..  .......+.+.++ ..+...+...+...++.++  ++|+...+......++|..++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~  155 (417)
T 2cfq_A           79 IITGMLVMFAPFFIFIFGPLL--QYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA  155 (417)
T ss_dssp             HHHHTTSCHHHHHHHTHHHHH--HTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Confidence            877655422111   111110  0012233444443 2333323333333344332  4556667777777888999999


Q ss_pred             HHHHHh---hhHHHHHHHHHHHH
Q 024030          162 LAARFL---STTSAFQAATIVSM  181 (273)
Q Consensus       162 ~~~~~l---~~~~~~~~~~~~~~  181 (273)
                      .+++.+   +|+..|++.++..+
T Consensus       156 ~l~~~l~~~~~~~~f~~~~~~~~  178 (417)
T 2cfq_A          156 SIVGIMFTINNQFVFWLGSGCAL  178 (417)
T ss_dssp             HHHHHHHHHCSHHHHTTTTTTTT
T ss_pred             HHHHHHHHhchhHHHHHHHHHHH
Confidence            998876   57888876655533

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.64  E-value=2.5e-14  Score=122.04  Aligned_cols=164  Identities=12%  Similarity=0.056  Sum_probs=119.3

Q ss_pred             HHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhcc
Q 024030           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR  102 (273)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  102 (273)
                      ........+|.|+.+...    ..+.+....|+..+...++..++.++.|+++||+|||+++..+..+.+++.....+.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~  310 (417)
T 2cfq_A          235 TYDVFDQQFANFFTSFFA----TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHTSS----SHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHh----ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334444567888766421    1133344567788888888889999999999999999999888887777766666665


Q ss_pred             CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHh----hhHHHHHHHH
Q 024030          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARFL----STTSAFQAAT  177 (273)
Q Consensus       103 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~gp~~~~~l----~~~~~~~~~~  177 (273)
                      +   .+.+++...+.++ ..+...+....+++|.+|++.|+++.++. +...++|..++|.++|.+    +++..|.+.+
T Consensus       311 ~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          311 S---ALEVVILKTLHMF-EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             S---HHHHHHHTTHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            5   5666666666665 34444466788999999999999999984 888889999999998876    5567777777


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 024030          178 IVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       178 ~~~~~~~~~~~~~~~~~  194 (273)
                      ++.++..++.+...||+
T Consensus       387 ~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          387 LVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHTTSSCCS
T ss_pred             HHHHHHHHHHHhhhcCC
Confidence            77666665544444543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.62  E-value=1.4e-14  Score=124.39  Aligned_cols=173  Identities=10%  Similarity=-0.040  Sum_probs=135.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhh--CCchhhH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLT   85 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~   85 (273)
                      +.++...+..++...+......++|.|+++.       .+.+....|++.+...++.+++.++.|+++||+  |||+.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  324 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEV-------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  324 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence            4566666677777777788888999998652       355667789999999999999999999999999  9999888


Q ss_pred             HHHHHHH-HHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHHHH
Q 024030           86 LPLTLSI-IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLA  163 (273)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp~~  163 (273)
                      .+..+.. ++..++.+.++. ..+...+..++.|+ +.+...+...+++.|.+|+++|+++.|+.+....+ |..++|.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~  402 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMNPAG-NPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI  402 (451)
T ss_dssp             HHHHHHHHHHHHHTTSCCTT-CHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            7776665 555555554321 25667777777887 44555577889999999999999999999999999 99999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHH
Q 024030          164 ARFL----STTSAFQAATIVSMLAAAYMRV  189 (273)
Q Consensus       164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~  189 (273)
                      .+.+    +++..|.+.+++.++..++..+
T Consensus       403 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          403 VGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            8887    6788888887777666655444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.53  E-value=3.9e-13  Score=116.74  Aligned_cols=172  Identities=13%  Similarity=0.065  Sum_probs=112.0

Q ss_pred             HHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHH
Q 024030           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (273)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~   97 (273)
                      +....+.+....+.|.+.++.        +.+............+...++.++.+.+.||+|||+.++.+.....++...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~  358 (491)
T 4gc0_A          287 FQQFVGINVVLYYAPEVFKTL--------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS  358 (491)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHhcchHHHHhc--------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence            333344445555566555442        111122233444557778888999999999999999999888777776655


Q ss_pred             HHh--ccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Q 024030           98 LAY--RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------  167 (273)
Q Consensus        98 ~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l--------  167 (273)
                      +..  ..... .+..++...+...+......+..+.+.+|.+|.+.|+++.|+......++..+++.+...+        
T Consensus       359 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~  437 (491)
T 4gc0_A          359 LGTAFYTQAP-GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA  437 (491)
T ss_dssp             HHHHHHTTCC-HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred             HHHHHhcccc-hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            442  12211 1222222222111122223367789999999999999999999999999988887655433        


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024030          168 --STTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (273)
Q Consensus       168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (273)
                        ++..+|++.++++++..+..++++||++.+.
T Consensus       438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence              3456788888888888888788999987653

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.48  E-value=1.6e-12  Score=111.09  Aligned_cols=159  Identities=8%  Similarity=-0.058  Sum_probs=120.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHH-HHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDV-TMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +.++...+..++..........++|.| +++..       +.+....|+..+...++..++.++.|+++||+|||+++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~  330 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIP-------GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA  330 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST-------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            455555666666666677778899999 76632       4556677888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (273)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~  166 (273)
                      +.++..++..+..+.++   .+.+. ..++.|+ +.+...+...++..|.+|++ ++++.++.. ...+|..++|.+.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~g~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~  403 (438)
T 3o7q_A          331 YALIAMALCLISAFAGG---HVGLI-ALTLCSA-FMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF  403 (438)
T ss_dssp             HHHHHHHHHHHHHHCCH---HHHHH-HHHHHHH-HHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC---cHHHH-HHHHHHH-HHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence            98888888777777665   44333 3366676 45556688999999999866 888888776 566899999999887


Q ss_pred             h----h-hHHHHHHHHHHH
Q 024030          167 L----S-TTSAFQAATIVS  180 (273)
Q Consensus       167 l----~-~~~~~~~~~~~~  180 (273)
                      +    + ++..|.+.++..
T Consensus       404 l~~~~g~~~~~~~~~~~~~  422 (438)
T 3o7q_A          404 VSDAAGNIPTAELIPALCF  422 (438)
T ss_dssp             HHHHHTSSGGGGHHHHHHH
T ss_pred             HHHHhcchHHHHHHHHHHH
Confidence            7    4 666677654443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.44  E-value=4.7e-13  Score=116.33  Aligned_cols=174  Identities=10%  Similarity=0.053  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH-----HH
Q 024030           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-----LP   87 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~   87 (273)
                      .+...+............+|.|.++..+.+.       ...+...+...++..++.++.|+++||+|||+...     .+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~  360 (491)
T 4aps_A          288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSW-------FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG  360 (491)
T ss_dssp             HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-------SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHhccCc-------cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence            3444445555566677788888877543332       12244455567778888999999999999997655     66


Q ss_pred             HHHHHHHHHHHHhcc------CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024030           88 LTLSIIPLAILAYRR------SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (273)
Q Consensus        88 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp  161 (273)
                      ..+..++..++....      ...+.+.+.+..++.|+ +.+...+...+++.|..|++.|+++.|+.+....+|..++|
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~  439 (491)
T 4aps_A          361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL-GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA  439 (491)
T ss_dssp             HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH-HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666655555432      11125566677777787 55555578899999999999999999999999999999999


Q ss_pred             HHHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024030          162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDD  194 (273)
Q Consensus       162 ~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      .+.+.+   +....|...+++.++..++.++..++.
T Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          440 QLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             HHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998887   446677777777766666545544544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.13  E-value=5.2e-11  Score=99.76  Aligned_cols=151  Identities=7%  Similarity=-0.072  Sum_probs=108.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHH
Q 024030            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (273)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~   86 (273)
                      +|.++...+..++..........+.|.|+++       ..+.+....|.+.+...++..++.++.|++.||+|+|  +..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~  268 (375)
T 2gfp_A          198 NSGFNCYLLMLIGGLAGIAAFEACSGVLMGA-------VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQ  268 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-------HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence            3455555666666666677777777777654       2477788889999999999999999999999999983  223


Q ss_pred             HHHH-HHHHHHHHHhcc-CchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024030           87 PLTL-SIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (273)
Q Consensus        87 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~  164 (273)
                      +... ...+........ ...+.+.+.+..++.|+ +.+...+...++..|..| ++|+++.|+.+...++|..++|.+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~  346 (375)
T 2gfp_A          269 SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFF-GAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS  346 (375)
T ss_dssp             HHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHH-HHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred             HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH-HHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence            3322 222222111111 01125666677777787 556666888999999998 8999999999999999999999988


Q ss_pred             HHhh
Q 024030          165 RFLS  168 (273)
Q Consensus       165 ~~l~  168 (273)
                      +.+.
T Consensus       347 g~l~  350 (375)
T 2gfp_A          347 AMLP  350 (375)
T ss_dssp             THHH
T ss_pred             HHHh
Confidence            8873

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.79  E-value=4.9e-09  Score=91.69  Aligned_cols=140  Identities=11%  Similarity=0.101  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHhHhhhhhHHh----hhhCCc----hhhHHHHHHHHHHHHHHHhcc------CchhHHHHHHHHHHHhh
Q 024030           54 GFQQAIIGLGTLVMMPVIGNLS----DQYGRK----AMLTLPLTLSIIPLAILAYRR------SISFFYAYYALRTLTAM  119 (273)
Q Consensus        54 g~~~~~~~~~~~~~~~~~g~l~----dr~grr----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~  119 (273)
                      +.+.....++..+..++.+++.    ||.|+|    +.+..+.++.+++..++.+..      ...+.+.+.+..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            4444444555666777777664    555443    345566666666666555532      01125566677788887


Q ss_pred             hchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------h---------HHHHHHHHHHHHHHH
Q 024030          120 VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS------T---------TSAFQAATIVSMLAA  184 (273)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~------~---------~~~~~~~~~~~~~~~  184 (273)
                       +.+...+...+++.|..|+++|++++|+.+...++|..+||.+.+.+.      |         +..|++.+++.++..
T Consensus       418 -~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (524)
T 2xut_A          418 -GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA  496 (524)
T ss_dssp             -HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence             556666888999999999999999999999999999999999988772      2         222555555555555


Q ss_pred             HHHHHHhcCC
Q 024030          185 AYMRVFLKDD  194 (273)
Q Consensus       185 ~~~~~~~~~~  194 (273)
                      ++.++..++.
T Consensus       497 ~~~~~~~~~~  506 (524)
T 2xut_A          497 IVFALYARSY  506 (524)
T ss_dssp             HHHC------
T ss_pred             HHHHHHHHHh
Confidence            5434444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	273
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	8e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 32/244 (13%), Positives = 73/244 (29%), Gaps = 6/244 (2%)

Query: 4   EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLG 63
            +   T   L   +FL  F        +     +A+ P L E   +    GF  + I + 
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIA 71

Query: 64  TLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123
                 ++G++SD+   +  L   L L+   +  + +    +   A   +        +G
Sbjct: 72  YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 131

Query: 124 SINCLALAYVADNISERQRASAFG-----ILLGVLSASFVCGTLAARFLSTTSAFQAATI 178
                    +    S+++R            +G      +     A F    +A      
Sbjct: 132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191

Query: 179 VSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238
            ++L A +    ++D   +     +         +   + E     K    + +   + L
Sbjct: 192 CAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 251

Query: 239 ICLL 242
             + 
Sbjct: 252 WYIA 255

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.9
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.73
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.58
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.46

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.2e-23  Score=176.82  Aligned_cols=215  Identities=12%  Similarity=0.049  Sum_probs=154.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHhhhchhhH
Q 024030           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (273)
Q Consensus        47 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~  125 (273)
                      +.+..+.|++.+.+.++..++++++|+++||+|||+++..+.++..++.+++++.+.. +.++.+++.|++.|+ +.+..
T Consensus        55 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~  133 (447)
T d1pw4a_          55 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGMG  133 (447)
T ss_dssp             TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH-HHHHT
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH-hhhhh
Confidence            5666778999999999999999999999999999999999999988888877765311 116788999999998 55666


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 024030          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (273)
Q Consensus       126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (273)
                      .+...+++.|++|+++|++++++.+....+|..++|.+++.+     +|++.+++.+.+.++..++.++..+++++....
T Consensus       134 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (447)
T d1pw4a_         134 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL  213 (447)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC
T ss_pred             hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhccc
Confidence            689999999999999999999999999999999998877664     788888888887777766656666665443332


Q ss_pred             CCCCCCCCCCCCcccccCCCCCCCccccccccchHHHHHHHHhhcchhHHHHHHHHHhccccccceeeeecc
Q 024030          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLVY  272 (273)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  272 (273)
                      .+..+...+         ++++ ..+...++....+...+..+++|.++......++......+..++.|.|
T Consensus       214 ~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (447)
T d1pw4a_         214 PPIEEYKND---------YPDD-YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY  275 (447)
T ss_dssp             CSCTTTCCC-----------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhh---------cccc-hhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhh
Confidence            211100000         0000 0000001111122233446778888888888888888777777776665

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2e-17  Score=137.40  Aligned_cols=186  Identities=15%  Similarity=0.091  Sum_probs=127.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhH
Q 024030            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~   85 (273)
                      |+|+++.+.+..++..++.....|++|.|++|.       .+.+..+.|++.+++.++..++++++|+++||+|||++++
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~   77 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDI-------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL   77 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            467888888888888889899999999998663       3677788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHhhhchhhHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHHHHHHHH
Q 024030           86 LPLTLSIIPLAILAYRRSISF-FYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGTL  162 (273)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~gp~  162 (273)
                      .+.....++..+.....+... ....+..+.+.+. ..+...........+..++  +++.+..+........+..++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          78 WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTT-TGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh-cccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence            988888877777666554211 1222344444443 2222223333333333322  34555667777888888889998


Q ss_pred             HHHHh---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 024030          163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (273)
Q Consensus       163 ~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (273)
                      +++.+   +|+..+........+..++..+..++++..++
T Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (417)
T d1pv7a_         157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSAT  196 (417)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSC
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHhcccccchh
Confidence            88877   45556666555555555554555555544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2e-13  Score=112.74  Aligned_cols=149  Identities=13%  Similarity=0.071  Sum_probs=125.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHhhhch
Q 024030           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (273)
Q Consensus        43 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  122 (273)
                      ..+.+.+....+.......++..++..+.+++.||+|+|+.+..+..+..++.....+.++   .+.+.+..++.|+ +.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~  326 (417)
T d1pv7a_         251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALEVVILKTLHMF-EV  326 (417)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHH-HH
T ss_pred             ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc---cchhhHHHHHHHH-HH
Confidence            3344666777888888999999999999999999999999999999999998888888888   7888888888887 66


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024030          123 GSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (273)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~gp~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      +...+...+++.|.+|++.|+++.++. +....+|..++|.++|.+    |++.+|.+.+++.++..++..+.+++++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            667789999999999999999999985 566789999999988877    6788888888888777777666665543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.4e-12  Score=109.46  Aligned_cols=175  Identities=10%  Similarity=-0.063  Sum_probs=120.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHhHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhCCchhhHHH
Q 024030            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (273)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~   87 (273)
                      +.++......++.....+....+.|.|+++.       .+.+....+...+...+...++.++.|+++||++||+.....
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  321 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEV-------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  321 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccc-------cccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence            3445555555666666677778888887553       355566778888889999999999999999999988654433


Q ss_pred             HHHHHHH---HHHHHhccCchhHHHHHHHHHHHhhhchhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHHHH
Q 024030           88 LTLSIIP---LAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLA  163 (273)
Q Consensus        88 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~gp~~  163 (273)
                      .....+.   ......... ...+...+..++.|+ +.+...+....+..|.+|++.|+++.|+.+...++ |..++|.+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~  399 (447)
T d1pw4a_         322 VFFMTLVTIATIVYWMNPA-GNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI  399 (447)
T ss_dssp             HHHHHHHHHHHHHTTSCCT-TCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322222   222222222 125666667777776 44455578888999999999999999999888777 56778888


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHHHh
Q 024030          164 ARFL----STTSAFQAATIVSMLAAAYMRVFL  191 (273)
Q Consensus       164 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~~  191 (273)
                      .+.+    ||+..|.+.++..++..++.....
T Consensus       400 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         400 VGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776    778888777666665555434433