Citrus Sinensis ID: 024034

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGITISSLMRINFSNL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHEEccHHHHHHHHHHcccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHEEccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccEEEccccHcEHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mseassssthrgSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIIlsgeeggicpaedgidsrlCFYDVLADhyvrmpesGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEValeparlnkipvqVQRDLFLVLSRFIFFYNSVDKLESFLkqfpvfpnaflvggsadFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGITISSLMRINFSNL
Flexible Loop (DISEMBL)
mseassssthrgsAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGeeggicpaedgIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIkvlqgitisslmrinfsnl
Low Complexity Region (SEG)
MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGITISSLMRINFSNL
Disordered region (IsUnstruct)
***************************************LLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGITISSLMRIN****
Disordered Region (DISOPRED)
******************LTQEIEKKLQRA*A**SQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGITISSLMRINFS**
Disordered Region (DISEMBL)
***********GSAYLNALTQEIEKKL********QRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGITISSLMRINFSNL
Disordered Region (DISPRO)
************SAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGITISSLMRINFSNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGITISSLMRINFSNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
225435022	357	PREDICTED: uncharacterized protein LOC10	0.945	0.722	0.802	1e-115
224054823	364	predicted protein [Populus trichocarpa]	0.948	0.711	0.786	1e-111
363807874	358	uncharacterized protein LOC100815374 [Gl	0.952	0.726	0.736	1e-107
224104479	359	predicted protein [Populus trichocarpa]	0.959	0.729	0.750	1e-105
356542469	358	PREDICTED: uncharacterized protein LOC10	0.952	0.726	0.736	1e-105
297788302	363	predicted protein [Arabidopsis lyrata su	0.912	0.685	0.742	1e-105
21537130	359	unknown [Arabidopsis thaliana]	0.912	0.693	0.746	1e-104
18424303	359	uncharacterized protein [Arabidopsis tha	0.912	0.693	0.746	1e-104
297796947	359	hypothetical protein ARALYDRAFT_496133 [	0.912	0.693	0.742	1e-104
357472747	266	hypothetical protein MTR_4g063570 [Medic	0.948	0.973	0.720	1e-104

>gi|225435022|ref|XP_002284193.1| PREDICTED: uncharacterized protein LOC100260346 [Vitis vinifera] gi|297746114|emb|CBI16170.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/258 (80%), Positives = 229/258 (88%)

Query: 5   SSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGE 64
           S +ST + SAYL ALTQEIEKKL RALAS SQRRNLL++LFADIALEVDDRARD+ILSGE
Sbjct: 2   SQASTAQSSAYLTALTQEIEKKLLRALASQSQRRNLLEQLFADIALEVDDRARDMILSGE 61

Query: 65  EGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWI 124
           E  I P E+  +S+LCFYDVLADHYVR+PE+G+ ILDLIVQLWSQLF SHIFALLFHKW+
Sbjct: 62  EDVISPVEERSESKLCFYDVLADHYVRVPENGKSILDLIVQLWSQLFASHIFALLFHKWL 121

Query: 125 FEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPV 184
           FEVQL N EVL RYSSALVQGATNVFWIDIQTN+  FQSLFRYLLEEVAL P RLNKI  
Sbjct: 122 FEVQLENSEVLFRYSSALVQGATNVFWIDIQTNTMRFQSLFRYLLEEVALVPTRLNKIAP 181

Query: 185 QVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVE 244
           Q QRDL+L+LSRFIFFYN VDKLESFLK+FP+FPN+FL GG AD FVIE+ADQLQKLKVE
Sbjct: 182 QAQRDLYLLLSRFIFFYNFVDKLESFLKEFPIFPNSFLAGGPADIFVIELADQLQKLKVE 241

Query: 245 PVLLHYLSQIKVLQGITI 262
           PVL+HYLSQIKVLQG+ +
Sbjct: 242 PVLVHYLSQIKVLQGLEL 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054823|ref|XP_002298370.1| predicted protein [Populus trichocarpa] gi|222845628|gb|EEE83175.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/262 (78%), Positives = 228/262 (87%), Gaps = 3/262 (1%)

Query: 1   MSEASSSSTHRGSA-YLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDI 59
           M + S ++   GS+ YL ALT EIEKKLQRALAS SQR NLLQELFADIALEVDDRAR I
Sbjct: 1   MEKTSLTTPGTGSSSYLKALTVEIEKKLQRALASASQRPNLLQELFADIALEVDDRARGI 60

Query: 60  ILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALL 119
           I S EE  I PAED  D +LCFYDVLAD+YV +PESG++IL LIVQLWSQ F SHIF+LL
Sbjct: 61  IFSREEDEISPAEDAADGQLCFYDVLADYYVWVPESGKQILHLIVQLWSQSFASHIFSLL 120

Query: 120 FHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFR--YLLEEVALEPA 177
           FHKW+FE QL+N EVL+R+SSALVQGATNV WIDIQTN RHFQSLF+  YLLEEVALEP 
Sbjct: 121 FHKWLFEAQLDNTEVLVRFSSALVQGATNVLWIDIQTNKRHFQSLFQASYLLEEVALEPM 180

Query: 178 RLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQ 237
           RLN+IPVQ QR+LFL+LSRFI FYNSVDK++SFLKQFP+FPNAFLVGG ADFFVIE+ADQ
Sbjct: 181 RLNRIPVQAQRELFLLLSRFILFYNSVDKIDSFLKQFPIFPNAFLVGGPADFFVIELADQ 240

Query: 238 LQKLKVEPVLLHYLSQIKVLQG 259
           LQKLKVEPVLLHYLSQIKVLQG
Sbjct: 241 LQKLKVEPVLLHYLSQIKVLQG 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807874|ref|NP_001241933.1| uncharacterized protein LOC100815374 [Glycine max] gi|255645052|gb|ACU23025.1| unknown [Glycine max]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/262 (73%), Positives = 222/262 (84%), Gaps = 2/262 (0%)

Query: 1   MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDII 60
           MSE  S    R SAYL+AL+Q I KKLQRALA+ SQRRNLLQELFADIALEVD+RA+D+I
Sbjct: 1   MSEPHSPP--RTSAYLDALSQAIHKKLQRALANSSQRRNLLQELFADIALEVDERAKDVI 58

Query: 61  LSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLF 120
           ++ EE GI PAED  D  LCFYDVLAD++VR+ ESG+ ILDLIVQLWSQ F SHIFALLF
Sbjct: 59  VNKEEDGISPAEDINDGPLCFYDVLADYFVRVSESGKPILDLIVQLWSQSFASHIFALLF 118

Query: 121 HKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLN 180
           HKW+FEV L+N EVLLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLE+V L+  RLN
Sbjct: 119 HKWLFEVHLDNPEVLLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEDVGLDHTRLN 178

Query: 181 KIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQK 240
           K+P Q QRD++L+LSRFI FYN  DK++SFLKQ P FP AFL+GG AD FV E+ DQLQK
Sbjct: 179 KVPFQAQRDMYLLLSRFILFYNKADKIDSFLKQCPAFPTAFLIGGPADIFVTELTDQLQK 238

Query: 241 LKVEPVLLHYLSQIKVLQGITI 262
           LKVEPVLLHYLS+IK+LQG+ +
Sbjct: 239 LKVEPVLLHYLSEIKILQGMEL 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104479|ref|XP_002313449.1| predicted protein [Populus trichocarpa] gi|222849857|gb|EEE87404.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/265 (75%), Positives = 222/265 (83%), Gaps = 3/265 (1%)

Query: 1   MSEASSSSTHRGS-AYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDI 59
           M + SS +   GS AYLNALT EIEKKLQRALASP+QRRNLLQELFAD ALEVDDRAR I
Sbjct: 1   MEKTSSPTPGTGSSAYLNALTVEIEKKLQRALASPTQRRNLLQELFADNALEVDDRARGI 60

Query: 60  ILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALL 119
           I S EE  I P ED  D +LCF+++LAD+YVR+PESG++IL LI+QLWSQ F SHIF LL
Sbjct: 61  IFSREEDAISPVEDDADGQLCFFNLLADYYVRVPESGKQILHLILQLWSQSFASHIFFLL 120

Query: 120 FHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFR--YLLEEVALEPA 177
           FHKW+FE QL+N EVLLR+SSALVQGATNVFWIDIQTN+R FQSLF+  YLL+EVAL P 
Sbjct: 121 FHKWLFEAQLDNTEVLLRFSSALVQGATNVFWIDIQTNTRRFQSLFQASYLLDEVALAPM 180

Query: 178 RLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQ 237
           +LNKIPVQ QR+LFL+LSRF  FYNS      FLKQFPVF NAFLVGG ADFFVIEVADQ
Sbjct: 181 QLNKIPVQAQRELFLLLSRFTLFYNSGKLSNFFLKQFPVFLNAFLVGGPADFFVIEVADQ 240

Query: 238 LQKLKVEPVLLHYLSQIKVLQGITI 262
           LQKLKVEPVLLHYLS IKVLQG+ +
Sbjct: 241 LQKLKVEPVLLHYLSHIKVLQGLEL 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542469|ref|XP_003539689.1| PREDICTED: uncharacterized protein LOC100775283 [Glycine max]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/262 (73%), Positives = 218/262 (83%), Gaps = 2/262 (0%)

Query: 1   MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDII 60
           MSE  SS   R SAYL+AL+Q I KKLQRALA+ SQRRNLLQELFADIALEVDDRA+D+I
Sbjct: 1   MSEPHSSP--RTSAYLDALSQAIHKKLQRALANSSQRRNLLQELFADIALEVDDRAKDVI 58

Query: 61  LSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLF 120
           ++ EE GI PAED  D  LCFYDVLAD++V + ES + ILD IVQLWSQ F SHIFALLF
Sbjct: 59  VNKEEDGISPAEDINDGPLCFYDVLADYFVLVSESRKPILDWIVQLWSQSFASHIFALLF 118

Query: 121 HKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLN 180
           HKW+FEV L+N EVLLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLE+VAL+  RLN
Sbjct: 119 HKWLFEVHLDNPEVLLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEDVALDHTRLN 178

Query: 181 KIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQK 240
           KIP Q QRD +L+LSRFI FYN  DK++ FLKQ P FP AFLVGG AD  V E+ DQLQK
Sbjct: 179 KIPFQAQRDTYLMLSRFILFYNKADKIDGFLKQCPAFPTAFLVGGPADILVTELTDQLQK 238

Query: 241 LKVEPVLLHYLSQIKVLQGITI 262
           LKVEPVLLHYLS+IK+LQG+ +
Sbjct: 239 LKVEPVLLHYLSEIKILQGLEL 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297788302|ref|XP_002862281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297307623|gb|EFH38539.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/249 (74%), Positives = 216/249 (86%)

Query: 14  AYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAED 73
           AYL ALTQEI+KKL RA+ SP+Q RNLLQ+LFADIALEVD+RA+D+ILS EE  I   E 
Sbjct: 19  AYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDERAKDVILSKEEDVISSVEA 78

Query: 74  GIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDE 133
            +D  LCF+DVLAD+YV++ E G+ ILDL+VQLWSQ F SHIF+LLFHKW+FEV+L N E
Sbjct: 79  DVDGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLFEVELENQE 138

Query: 134 VLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLV 193
           +LLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLEEVALE  RL KIP+Q QR+L+L+
Sbjct: 139 ILLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQMRLKKIPIQAQRELYLL 198

Query: 194 LSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQ 253
           LSRFIFFYNSVDKL+SFL+ FP FPNAFL+GG  DF VIE+ DQLQKLKVEPVLLHYLSQ
Sbjct: 199 LSRFIFFYNSVDKLDSFLRNFPEFPNAFLIGGPGDFLVIELTDQLQKLKVEPVLLHYLSQ 258

Query: 254 IKVLQGITI 262
           +K+LQG+ +
Sbjct: 259 MKILQGMEL 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537130|gb|AAM61471.1| unknown [Arabidopsis thaliana]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 216/249 (86%)

Query: 14  AYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAED 73
           AYL ALTQEI+KKL RA+ SP+Q RNLLQ+LFADIALEVDDRA+D+ILS EE  I   E 
Sbjct: 16  AYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDVILSKEEDVITSDEA 75

Query: 74  GIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDE 133
             D  LCF+DVLAD+YV++ E G+ ILDL+VQLWSQ F SHIF+LLFHKW+FEV+L+N E
Sbjct: 76  DADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLFEVELDNQE 135

Query: 134 VLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLV 193
           +LLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLEEVALE  RL KIP+Q QR+L+L+
Sbjct: 136 ILLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQIRLKKIPIQAQRELYLL 195

Query: 194 LSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQ 253
           LSRFIFFYNSVDKL+SFL+ FP FPNAFL+GG  DF VIE+ DQLQKLKVEPVLLHYLSQ
Sbjct: 196 LSRFIFFYNSVDKLDSFLRNFPEFPNAFLIGGPGDFLVIELTDQLQKLKVEPVLLHYLSQ 255

Query: 254 IKVLQGITI 262
           +K+LQG+ +
Sbjct: 256 MKILQGMEL 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424303|ref|NP_568917.1| uncharacterized protein [Arabidopsis thaliana] gi|332009876|gb|AED97259.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 216/249 (86%)

Query: 14  AYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAED 73
           AYL ALTQEI+KKL RA+ SP+Q RNLLQ+LFADIALEVDDRA+D+ILS EE  I   E 
Sbjct: 16  AYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDVILSKEEDLITSDEA 75

Query: 74  GIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDE 133
             D  LCF+DVLAD+YV++ E G+ ILDL+VQLWSQ F SHIF+LLFHKW+FEV+L+N E
Sbjct: 76  DADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLFEVELDNQE 135

Query: 134 VLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLV 193
           +LLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLEEVALE  RL KIP+Q QR+L+L+
Sbjct: 136 ILLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQIRLKKIPIQAQRELYLL 195

Query: 194 LSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQ 253
           LSRFIFFYNSVDKL+SFL+ FP FPNAFL+GG  DF VIE+ DQLQKLKVEPVLLHYLSQ
Sbjct: 196 LSRFIFFYNSVDKLDSFLRNFPEFPNAFLIGGPGDFLVIELTDQLQKLKVEPVLLHYLSQ 255

Query: 254 IKVLQGITI 262
           +K+LQG+ +
Sbjct: 256 MKILQGMEL 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796947|ref|XP_002866358.1| hypothetical protein ARALYDRAFT_496133 [Arabidopsis lyrata subsp. lyrata] gi|297312193|gb|EFH42617.1| hypothetical protein ARALYDRAFT_496133 [Arabidopsis lyrata subsp. lyrata]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/249 (74%), Positives = 215/249 (86%)

Query: 14  AYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAED 73
           AYL ALTQEI+KKL RA+ SP+Q RNLLQ+LFADIALEVD+RA+D+ILS EE  I   E 
Sbjct: 16  AYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDERAKDVILSKEEDVISSVEA 75

Query: 74  GIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDE 133
             D  LCF+DVLAD+YV++ E G+ ILDL+VQLWSQ F SHIF+LLFHKW+FEV+L N E
Sbjct: 76  DADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLFEVELENQE 135

Query: 134 VLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLV 193
           +LLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLEEVALE  RL KIP+Q QR+L+L+
Sbjct: 136 ILLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQMRLKKIPIQAQRELYLL 195

Query: 194 LSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQ 253
           LSRFIFFYNSVDKL+SFL+ FP FPNAFL+GG  DF VIE+ DQLQKLKVEPVLLHYLSQ
Sbjct: 196 LSRFIFFYNSVDKLDSFLRNFPEFPNAFLIGGPGDFLVIELTDQLQKLKVEPVLLHYLSQ 255

Query: 254 IKVLQGITI 262
           +K+LQG+ +
Sbjct: 256 MKILQGMEL 264

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472747|ref|XP_003606658.1| hypothetical protein MTR_4g063570 [Medicago truncatula] gi|355507713|gb|AES88855.1| hypothetical protein MTR_4g063570 [Medicago truncatula]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/261 (72%), Positives = 221/261 (84%), Gaps = 2/261 (0%)

Query: 1   MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDII 60
           MS+A+S    R S YL+AL+Q I KKLQRALA+ SQRRNLLQELFAD+ALEVDDRA+D+I
Sbjct: 1   MSDANS--LPRNSGYLDALSQAIHKKLQRALANSSQRRNLLQELFADVALEVDDRAKDVI 58

Query: 61  LSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLF 120
            + EE  I P    +D  LCFYDVLAD++V++PESG+ +LD+IVQLWSQ F SHIF+LLF
Sbjct: 59  FNKEEDVISPVNYAMDGPLCFYDVLADYFVQVPESGKPVLDMIVQLWSQSFASHIFSLLF 118

Query: 121 HKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLN 180
           HKW+FEV L+N EVLLRYSSALVQGATNVFWIDIQTN+R FQS+FRYLL++VAL+  RLN
Sbjct: 119 HKWMFEVHLDNPEVLLRYSSALVQGATNVFWIDIQTNTRRFQSIFRYLLDDVALDHTRLN 178

Query: 181 KIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQK 240
           KIP+Q QRD++L+LSRFI FYNS  K++SFLKQ PVF  AFLVGG AD FV E+ DQLQK
Sbjct: 179 KIPLQAQRDMYLLLSRFILFYNSAGKVDSFLKQCPVFQTAFLVGGPADIFVNELTDQLQK 238

Query: 241 LKVEPVLLHYLSQIKVLQGIT 261
           LKVEPVLLHYLS+IKVLQG T
Sbjct: 239 LKVEPVLLHYLSEIKVLQGTT 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2168158	359	AT5G59960 "AT5G59960" [Arabido	0.941	0.715	0.743	8.2e-99

TAIR|locus:2168158 AT5G59960 "AT5G59960" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 191/257 (74%), Positives = 221/257 (85%)

Query:     6 SSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEE 65
             SSS  R SAYL ALTQEI+KKL RA+ SP+Q RNLLQ+LFADIALEVDDRA+D+ILS EE
Sbjct:     8 SSSFSRRSAYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDVILSKEE 67

Query:    66 GGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIF 125
               I   E   D  LCF+DVLAD+YV++ E G+ ILDL+VQLWSQ F SHIF+LLFHKW+F
Sbjct:    68 DLITSDEADADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLF 127

Query:   126 EVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQ 185
             EV+L+N E+LLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLEEVALE  RL KIP+Q
Sbjct:   128 EVELDNQEILLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQIRLKKIPIQ 187

Query:   186 VQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEP 245
              QR+L+L+LSRFIFFYNSVDKL+SFL+ FP FPNAFL+GG  DF VIE+ DQLQKLKVEP
Sbjct:   188 AQRELYLLLSRFIFFYNSVDKLDSFLRNFPEFPNAFLIGGPGDFLVIELTDQLQKLKVEP 247

Query:   246 VLLHYLSQIKVLQGITI 262
             VLLHYLSQ+K+LQG+ +
Sbjct:   248 VLLHYLSQMKILQGMEL 264


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       273    0.0010  114 3  11 22  0.41    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  185 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.20u 0.24s 23.44t   Elapsed:  00:00:01
  Total cpu time:  23.20u 0.24s 23.44t   Elapsed:  00:00:01
  Start:  Sat May 11 07:54:57 2013   End:  Sat May 11 07:54:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00