Citrus Sinensis ID: 024053

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
MMRPATMIRNACLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNDHNTTLPAISLI
cccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEccccccccccccHHHHHHHHHHccccccccccEEEEcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccEEEccEEEEEcccccccccccEEEEEEEEccccccccccccEEEEEEccEEEcccccccccccccccccccHHHHHHHHHHHcccEEEEEcccccc
cccccHccccccccccccccHccccccccccccccccccccccEEEEEcccccccHHHHHHHHcccccccccccEEEEEEEEccEEcccEEEEcccEEEcccEHHHHcccEEEccEEEEEEcccEEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHcccccccEEEEEEEEEEccEcccccccccEEEEEEEEEEccccHHHcccEEEEEEccEEEcccccccccEcccHHHHHHHHHHHHHHHHHccccEEEEEEEEcc
MMRPATMIRNACLRNFsqslrvgsaflksgdfcRYTSQAAASLQqdcepsaysddesadhmdwdnlgfgltpadymytmkcsndyfekgrlsrygkielspssgvlnygQGLFEGMKAYRKedgqlvlfrpdqnairlqtgaermcmpspsiDQFIDAVKQTALankrwvpppgkgslyirpllvgsgpilglapapeytflvfaspvgnyfkeglaplnlyvedefhratpggaggvkaisnyapvSEYFSLMLFAKKLndhnttlpaisli
MMRPATMIRNACLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKielspssgvLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALAnkrwvpppgkGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNdhnttlpaisli
MMRPATMIRNACLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNDHNTTLPAISLI
*******IRNACLRNFSQSLRVGSAFLKSGDFCRYTS***********************MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNDH**********
**************************************************************WDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNDHNTTLPAISLI
MMRPATMIRNACLRNFSQSLRVGSAFLKSGDFCRYTSQA*****************SADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNDHNTTLPAISLI
******MIRNACLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNDHNTTLPAISLI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMRPATMIRNACLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFSLMLFAKKLNDHNTTLPAISLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query273 2.2.26 [Sep-21-2011]
Q9M439 388 Branched-chain-amino-acid yes no 0.805 0.567 0.705 3e-91
Q9FYA6 415 Branched-chain-amino-acid no no 0.860 0.566 0.616 3e-85
Q9M401 413 Branched-chain-amino-acid no no 0.699 0.462 0.711 2e-83
Q93Y32 384 Branched-chain-amino-acid no no 0.857 0.609 0.604 1e-78
Q9LPM9 356 Branched-chain-amino-acid no no 0.703 0.539 0.618 1e-70
Q9LPM8 367 Putative branched-chain-a no no 0.703 0.523 0.613 6e-69
Q9LE06 354 Methionine aminotransfera no no 0.721 0.556 0.56 4e-64
P54689 343 Branched-chain-amino-acid yes no 0.673 0.536 0.435 5e-40
A0R066 368 Branched-chain-amino-acid yes no 0.659 0.489 0.428 2e-38
O31461 356 Branched-chain-amino-acid yes no 0.673 0.516 0.435 6e-38
>sp|Q9M439|BCAT2_ARATH Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  334 bits (857), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 158/224 (70%), Positives = 190/224 (84%), Gaps = 4/224 (1%)

Query: 32  FCRYTSQAAASLQQDCEPSAYS--DDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEK 88
           F +Y +QAA++L+++ +   Y   DD  AD +DWDNLGFGL PADYMY MKCS D  F +
Sbjct: 26  FAKYNAQAASALREERKKPLYQNGDDVYAD-LDWDNLGFGLNPADYMYVMKCSKDGEFTQ 84

Query: 89  GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
           G LS YG I+LSPS+GVLNYGQ ++EG KAYRKE+G+L+LFRPD NAIR++ GAERM MP
Sbjct: 85  GELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMP 144

Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPV 208
           SPS+DQF++AVKQTALANKRWVPP GKG+LYIRPLL+GSGPILGL PAPEYTF+V+ASPV
Sbjct: 145 SPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPV 204

Query: 209 GNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFS 252
           GNYFKEG+A LNLYVE+E+ RA PGGAGGVK+I+NYAPV +  S
Sbjct: 205 GNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALS 248
Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 2
>sp|Q9FYA6|BCAT5_ARATH Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1 Back     alignment and function description
>sp|Q9M401|BCAT3_ARATH Branched-chain-amino-acid aminotransferase 3, chloroplastic OS=Arabidopsis thaliana GN=BCAT3 PE=1 SV=1 Back     alignment and function description
>sp|Q93Y32|BCAT1_ARATH Branched-chain-amino-acid aminotransferase 1, mitochondrial OS=Arabidopsis thaliana GN=BCAT1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LPM9|BCAT6_ARATH Branched-chain-amino-acid aminotransferase 6 OS=Arabidopsis thaliana GN=BCAT6 PE=1 SV=1 Back     alignment and function description
>sp|Q9LPM8|BCAT7_ARATH Putative branched-chain-amino-acid aminotransferase 7 OS=Arabidopsis thaliana GN=BCAT7 PE=5 SV=1 Back     alignment and function description
>sp|Q9LE06|BCAT4_ARATH Methionine aminotransferase BCAT4 OS=Arabidopsis thaliana GN=BCAT4 PE=1 SV=1 Back     alignment and function description
>sp|P54689|ILVE_HAEIN Branched-chain-amino-acid aminotransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|A0R066|ILVE_MYCS2 Branched-chain-amino-acid aminotransferase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=ilvE PE=1 SV=1 Back     alignment and function description
>sp|O31461|ILVE1_BACSU Branched-chain-amino-acid transaminase 1 OS=Bacillus subtilis (strain 168) GN=ilvE PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
302142143 387 unnamed protein product [Vitis vinifera] 0.934 0.658 0.686 8e-99
225458938 387 PREDICTED: branched-chain-amino-acid ami 0.871 0.614 0.733 8e-98
255537936 399 branched-chain amino acid aminotransfera 0.868 0.593 0.687 6e-96
14280354 385 branched-chain amino acid aminotransfera 0.846 0.6 0.674 3e-91
449450320 390 PREDICTED: branched-chain-amino-acid ami 0.864 0.605 0.668 2e-90
288310302 389 branched chain amino acid transaminase [ 0.827 0.580 0.686 6e-90
15218409 388 branched-chain-amino-acid aminotransfera 0.805 0.567 0.705 2e-89
297843816 388 ATBCAT-2 [Arabidopsis lyrata subsp. lyra 0.805 0.567 0.696 4e-89
407317193 393 mitochodrial branched-chain aminotransfe 0.864 0.600 0.668 2e-88
359492522 379 PREDICTED: branched-chain-amino-acid ami 0.765 0.551 0.727 3e-87
>gi|302142143|emb|CBI19346.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  365 bits (938), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 182/265 (68%), Positives = 207/265 (78%), Gaps = 10/265 (3%)

Query: 9   RNACLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGF 68
           R AC RN   SLR GS   K      +TS+ A SLQ   EPS YSDDE AD +DWDNLGF
Sbjct: 4   RRACFRNLILSLRTGSTASKLRSSNCFTSRTAPSLQPLVEPSPYSDDEYAD-VDWDNLGF 62

Query: 69  GLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLV 127
           GL P DYMYT KCS    FE+G LSRYG IELSPS+GVLNYGQGLFEG KAYR+E+G+L 
Sbjct: 63  GLIPTDYMYTTKCSEGGNFEEGHLSRYGNIELSPSAGVLNYGQGLFEGTKAYRRENGRLC 122

Query: 128 LFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 187
           LFRPDQNAIR+Q GAERMCMPSPSI  F++AVKQTALANKRW+PPPGKGSLYIRPLL+GS
Sbjct: 123 LFRPDQNAIRMQVGAERMCMPSPSIHHFVEAVKQTALANKRWIPPPGKGSLYIRPLLMGS 182

Query: 188 GPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPV 247
           GP+LGL PAPE TFL++ASPVGNYFK+  APLNL+++DE+HRAT GGAGGVKAI+NY+PV
Sbjct: 183 GPVLGLGPAPECTFLIYASPVGNYFKQVSAPLNLFIDDEYHRATRGGAGGVKAITNYSPV 242

Query: 248 --------SEYFSLMLFAKKLNDHN 264
                   S  FS +LF   +N  N
Sbjct: 243 LKAQSRAKSRGFSDVLFLDSVNKKN 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458938|ref|XP_002285511.1| PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic [Vitis vinifera] gi|302142142|emb|CBI19345.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255537936|ref|XP_002510033.1| branched-chain amino acid aminotransferase, putative [Ricinus communis] gi|223550734|gb|EEF52220.1| branched-chain amino acid aminotransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|14280354|gb|AAK57535.1| branched-chain amino acid aminotransferase [Capsicum annuum] Back     alignment and taxonomy information
>gi|449450320|ref|XP_004142911.1| PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Cucumis sativus] gi|449494398|ref|XP_004159536.1| PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|288310302|gb|ADC45390.1| branched chain amino acid transaminase [Cucumis melo] Back     alignment and taxonomy information
>gi|15218409|ref|NP_172478.1| branched-chain-amino-acid aminotransferase 2 [Arabidopsis thaliana] gi|79317492|ref|NP_001031015.1| branched-chain-amino-acid aminotransferase 2 [Arabidopsis thaliana] gi|26391680|sp|Q9M439.1|BCAT2_ARATH RecName: Full=Branched-chain-amino-acid aminotransferase 2, chloroplastic; Short=Atbcat-2; Flags: Precursor gi|13877745|gb|AAK43950.1|AF370135_1 putative tat-binding protein [Arabidopsis thaliana] gi|8249004|emb|CAB93128.1| branched-chain amino acid transaminase [Arabidopsis thaliana] gi|15293209|gb|AAK93715.1| putative tat-binding protein [Arabidopsis thaliana] gi|222424474|dbj|BAH20192.1| AT1G10070 [Arabidopsis thaliana] gi|332190416|gb|AEE28537.1| branched-chain-amino-acid aminotransferase 2 [Arabidopsis thaliana] gi|332190417|gb|AEE28538.1| branched-chain-amino-acid aminotransferase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297843816|ref|XP_002889789.1| ATBCAT-2 [Arabidopsis lyrata subsp. lyrata] gi|297335631|gb|EFH66048.1| ATBCAT-2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|407317193|gb|AFU07634.1| mitochodrial branched-chain aminotransferase 1 [Humulus lupulus] Back     alignment and taxonomy information
>gi|359492522|ref|XP_002285506.2| PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
TAIR|locus:2201921 388 BCAT-2 "branched-chain amino a 0.805 0.567 0.705 3.4e-84
TAIR|locus:2097320 413 BCAT3 "branched-chain aminotra 0.750 0.496 0.679 4.3e-77
TAIR|locus:2201931 384 BCAT-1 "branched-chain amino a 0.875 0.622 0.595 6.7e-72
TAIR|locus:2031030 356 AT1G50110 [Arabidopsis thalian 0.703 0.539 0.618 1.2e-65
TAIR|locus:2031040 367 BCAT7 "branched-chain amino ac 0.758 0.564 0.585 2.3e-64
TAIR|locus:2091216 354 BCAT4 "branched-chain aminotra 0.721 0.556 0.56 5.5e-61
UNIPROTKB|A0R066 368 ilvE "Branched-chain-amino-aci 0.663 0.491 0.431 5.5e-38
UNIPROTKB|Q10399 368 ilvE "Branched-chain-amino-aci 0.655 0.486 0.430 2.4e-35
TIGR_CMR|GSU_0656 357 GSU_0656 "branched-chain amino 0.692 0.529 0.402 2.2e-34
DICTYBASE|DDB_G0285509 378 bcaA "branched-chain amino aci 0.721 0.521 0.376 2e-31
TAIR|locus:2201921 BCAT-2 "branched-chain amino acid transaminase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 158/224 (70%), Positives = 190/224 (84%)

Query:    32 FCRYTSQAAASLQQDCEPSAYS--DDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEK 88
             F +Y +QAA++L+++ +   Y   DD  AD +DWDNLGFGL PADYMY MKCS D  F +
Sbjct:    26 FAKYNAQAASALREERKKPLYQNGDDVYAD-LDWDNLGFGLNPADYMYVMKCSKDGEFTQ 84

Query:    89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
             G LS YG I+LSPS+GVLNYGQ ++EG KAYRKE+G+L+LFRPD NAIR++ GAERM MP
Sbjct:    85 GELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMP 144

Query:   149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPV 208
             SPS+DQF++AVKQTALANKRWVPP GKG+LYIRPLL+GSGPILGL PAPEYTF+V+ASPV
Sbjct:   145 SPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPV 204

Query:   209 GNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSEYFS 252
             GNYFKEG+A LNLYVE+E+ RA PGGAGGVK+I+NYAPV +  S
Sbjct:   205 GNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALS 248
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IEA;IGI
GO:0005737 "cytoplasm" evidence=ISM
GO:0005739 "mitochondrion" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0009081 "branched-chain amino acid metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
TAIR|locus:2097320 BCAT3 "branched-chain aminotransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201931 BCAT-1 "branched-chain amino acid transaminase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031030 AT1G50110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031040 BCAT7 "branched-chain amino acid transaminase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091216 BCAT4 "branched-chain aminotransferase4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A0R066 ilvE "Branched-chain-amino-acid aminotransferase" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)] Back     alignment and assigned GO terms
UNIPROTKB|Q10399 ilvE "Branched-chain-amino-acid aminotransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0656 GSU_0656 "branched-chain amino acid aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285509 bcaA "branched-chain amino acid aminotransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M439BCAT2_ARATH2, ., 6, ., 1, ., 4, 20.70530.80580.5670yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.6.10.921
4th Layer2.6.1.420.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
PLN02782 403 PLN02782, PLN02782, Branched-chain amino acid amin 1e-126
PLN02259 388 PLN02259, PLN02259, branched-chain-amino-acid amin 1e-115
PLN03117 355 PLN03117, PLN03117, Branched-chain-amino-acid amin 1e-102
PLN02883 384 PLN02883, PLN02883, Branched-chain amino acid amin 2e-98
PRK13357 356 PRK13357, PRK13357, branched-chain amino acid amin 6e-93
cd01557 279 cd01557, BCAT_beta_family, BCAT_beta_family: Branc 1e-67
TIGR01123 313 TIGR01123, ilvE_II, branched-chain amino acid amin 3e-67
cd00449256 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen 5e-36
COG0115 284 COG0115, IlvE, Branched-chain amino acid aminotran 4e-35
TIGR01122 298 TIGR01122, ilvE_I, branched-chain amino acid amino 4e-11
PRK06606 306 PRK06606, PRK06606, branched-chain amino acid amin 3e-10
cd01559249 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor 1e-05
PRK08320 288 PRK08320, PRK08320, branched-chain amino acid amin 1e-04
PRK06092268 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyas 0.001
TIGR03461261 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase 0.002
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase Back     alignment and domain information 
 Score =  365 bits (938), Expect = e-126
 Identities = 150/231 (64%), Positives = 181/231 (78%), Gaps = 8/231 (3%)

Query: 18  QSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMY 77
            +  V S  + S         A +S       S+Y++      +DWDNLGFGL P DYMY
Sbjct: 34  SNSSVSSNPISSKAISLTRCDAVSS-------SSYTEVTELADIDWDNLGFGLVPTDYMY 86

Query: 78  TMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAI 136
            MKC+ D  F KG L R+G IELSPS+GVLNYGQGLFEG+KAYRKEDG ++LFRP++NAI
Sbjct: 87  IMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAI 146

Query: 137 RLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 196
           R++ GAERMCMP+P+++QF++AVK+T LANKRWVPPPGKGSLYIRPLL+GSG +LGLAPA
Sbjct: 147 RMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPA 206

Query: 197 PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPV 247
           PEYTFL++ SPVGNYFKEG+AP+NL VE+EFHRATPGG GGVK I NYA V
Sbjct: 207 PEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAV 257

Length = 403
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase Back     alignment and domain information
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 273
PLN02883 384 Branched-chain amino acid aminotransferase 100.0
PLN02259 388 branched-chain-amino-acid aminotransferase 2 100.0
KOG0975 379 consensus Branched chain aminotransferase BCAT1, p 100.0
PLN02782 403 Branched-chain amino acid aminotransferase 100.0
PLN03117 355 Branched-chain-amino-acid aminotransferase; Provis 100.0
PRK13357 356 branched-chain amino acid aminotransferase; Provis 100.0
TIGR01123 313 ilvE_II branched-chain amino acid aminotransferase 100.0
TIGR01122 298 ilvE_I branched-chain amino acid aminotransferase, 100.0
PRK06606 306 branched-chain amino acid aminotransferase; Valida 100.0
PRK07544292 branched-chain amino acid aminotransferase; Valida 100.0
PRK12479 299 branched-chain amino acid aminotransferase; Provis 100.0
PRK08320288 branched-chain amino acid aminotransferase; Review 99.97
cd01557279 BCAT_beta_family BCAT_beta_family: Branched-chain 99.97
PRK13356286 aminotransferase; Provisional 99.97
cd01558270 D-AAT_like D-Alanine aminotransferase (D-AAT_like) 99.97
PLN02845 336 Branched-chain-amino-acid aminotransferase-like pr 99.97
PRK06680286 D-amino acid aminotransferase; Reviewed 99.97
COG0115284 IlvE Branched-chain amino acid aminotransferase/4- 99.97
PRK07650283 4-amino-4-deoxychorismate lyase; Provisional 99.96
TIGR01121276 D_amino_aminoT D-amino acid aminotransferase. Spec 99.96
TIGR03461261 pabC_Proteo aminodeoxychorismate lyase. Members of 99.96
PRK07849292 4-amino-4-deoxychorismate lyase; Provisional 99.96
PRK12400290 D-amino acid aminotransferase; Reviewed 99.96
PRK06092268 4-amino-4-deoxychorismate lyase; Reviewed 99.96
cd01559249 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya 99.95
PRK09266266 hypothetical protein; Provisional 99.94
cd00449256 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes 99.94
PRK07546209 hypothetical protein; Provisional 99.68
PF01063231 Aminotran_4: Aminotransferase class IV; InterPro: 99.51
PRK07101187 hypothetical protein; Provisional 99.28
>PLN02883 Branched-chain amino acid aminotransferase Back     alignment and domain information 
Probab=100.00  E-value=6.2e-58  Score=436.52  Aligned_cols=261  Identities=57%  Similarity=0.939  Sum_probs=237.6

Q ss_pred             HHHh-hhhhhcccccccccccccchhhhhhhccccccCCCCCCCccccCCCCCCCCCCCcccCCceEEEEeec-ceEEcC
Q 024053           12 CLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKG   89 (273)
Q Consensus        12 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~-~~w~nG   89 (273)
                      .||+ |.|++.++|+++..+.+.++.+++..++...+.......++..+++||++|+||++|||||++++|.+ +.|.+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~~~   81 (384)
T PLN02883          2 ALRRCLPQSSTTSSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQG   81 (384)
T ss_pred             chhhhccccccchhhhhccccceeccccccccchhhhcccccccccccccCCchhcCcCCeecCceEEEEEcCCCcccCC
Confidence            3566 78999999999999999999998877765444444456777888999999999999999999999876 489999


Q ss_pred             EEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCC
Q 024053           90 RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW  169 (273)
Q Consensus        90 ~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~Sa~~L~ip~p~~e~l~e~i~elv~~n~~~  169 (273)
                      +|+|+++++|||++++||||||||||||+||++||++.+||+++|++||++||++|+||.++.++|.++|+++|++|+.|
T Consensus        82 ~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~w  161 (384)
T PLN02883         82 YLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRW  161 (384)
T ss_pred             eEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCCCCCeEEEEecCccccCCCCcCchhhhccHHHHHH
Q 024053          170 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVSE  249 (273)
Q Consensus       170 vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~~~gv~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~  249 (273)
                      ||+.+++++||||+++++++.+|+.++.+++++|+++|+++|++++.+++++.+++.++|+++++++++|++|||+++++
T Consensus       162 vp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~ll  241 (384)
T PLN02883        162 VPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLE  241 (384)
T ss_pred             CCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHHHHHH
Confidence            99987789999999999999899988778999999999999987777889999997679999999999999999999997


Q ss_pred             H--------hccEEEEeCCCC-EEEecccccC
Q 024053          250 Y--------FSLMLFAKKLND-HNTTLPAISL  272 (273)
Q Consensus       250 a--------~deaL~LD~~g~-~~~~~~~~~~  272 (273)
                      +        |||+||||.+++ ..+|++++.+
T Consensus       242 a~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNl  273 (384)
T PLN02883        242 VMRRAKSRGFSDVLYLDADTGKNIEEVSAANI  273 (384)
T ss_pred             HHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEE
Confidence            7        999999998854 7889888754

>PLN02259 branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02782 Branched-chain amino acid aminotransferase Back     alignment and domain information
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>PRK13357 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>PRK06606 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK07544 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK12479 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>PRK08320 branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>PRK13356 aminotransferase; Provisional Back     alignment and domain information
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information
>PRK06680 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase Back     alignment and domain information
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase Back     alignment and domain information
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PRK12400 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>PRK09266 hypothetical protein; Provisional Back     alignment and domain information
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>PRK07546 hypothetical protein; Provisional Back     alignment and domain information
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue Back     alignment and domain information
>PRK07101 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
4dqn_A 345 Crystal Structure Of The Branched-Chain Aminotransf 2e-47
3uyy_A 358 Crystal Structures Of Branched-Chain Aminotransfera 2e-40
3dtf_A 372 Structural Analysis Of Mycobacterial Branched Chain 1e-39
3jz6_A 373 Crystal Structure Of Mycobacterium Smegmatis Branch 1e-39
3ht5_A 368 Crystal Structure Of Ilve A Branched Chain Amino Ac 3e-37
1ekf_A 365 Crystallographic Structure Of Human Branched Chain 2e-27
2hg8_A 365 Crystal Structure Of Cys315ala Mutant Of Human Mito 2e-27
2hgw_A 365 Crystal Structure Of Cys318ala Mutant Of Human Mito 2e-27
2hdk_A 365 Crystal Structure Of Cys315ala-Cys318ala Mutant Of 2e-27
2cog_A 386 Crystal Structure Of Oxidized Human Cytosolic Branc 8e-27
2abj_A 366 Crystal Structure Of Human Branched Chain Amino Aci 9e-27
2hhf_B 365 X-ray Crystal Structure Of Oxidized Human Mitochond 3e-26
2hhf_A 365 X-ray Crystal Structure Of Oxidized Human Mitochond 3e-25
3u0g_A 328 Crystal Structure Of Branched-Chain Amino Acid Amin 2e-07
1i1k_A 309 Crystal Structure Of Eschelichia Coli Branched-chai 7e-07
1a3g_A 308 Branched-chain Amino Acid Aminotransferase From Esc 1e-06
1wrv_A 308 Crystal Structure Of T.Th.Hb8 Branched-Chain Amino 2e-04
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase From Streptococcus Mutans Length = 345 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 120/186 (64%), Gaps = 1/186 (0%)
Query: 61  MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
           +DW NLGF      + Y     +  ++ G+L+    + +S SS  L+YGQ  FEG+KAYR
Sbjct: 9   LDWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYR 68
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLY 179
            +DG + LFRP+ NA RLQ  A+R+ MP    D+FIDA KQ   AN+ +VPP G G +LY
Sbjct: 69  TKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLY 128
Query: 180 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 239
           +RPLL+G G ++G+ PA EY F +FA PVGNYFK GLAP N  ++D++ RA P G G  K
Sbjct: 129 LRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAK 188
Query: 240 AISNYA 245
              NYA
Sbjct: 189 VGGNYA 194
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From Deinococcus Radiodurans Complexes With Alpha-Ketoisocaproate And L-Glutamate Suggest Its Radio-Resistance For Catalysis Length = 358 Back     alignment and structure
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain Aminotransferase- Implications For Inhibitor Design Length = 372 Back     alignment and structure
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched Chain Aminotransferase In Complex With Pyridoxal-5'-Phosphate At 1.9 Angstrom. Length = 373 Back     alignment and structure
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid Transaminase From Mycobacterium Tuberculosis Length = 368 Back     alignment and structure
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino Acid Aminotransferase (Mitochondrial) Complexed With Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic Form) Length = 365 Back     alignment and structure
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Complexed With Its Substrate Mimic, N-Methyl Leucine. Length = 365 Back     alignment and structure
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Length = 365 Back     alignment and structure
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Length = 365 Back     alignment and structure
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic Branched-Chain Aminotransferase Complexed With 4-Methylvalerate Length = 386 Back     alignment and structure
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid Transaminase In A Complex With An Inhibitor, C16h10n2o4f3scl, And Pyridoxal 5' Phosphate. Length = 366 Back     alignment and structure
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial Branched Chain Aminotransferase (hbcatm) Length = 365 Back     alignment and structure
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial Branched Chain Aminotransferase (hbcatm) Length = 365 Back     alignment and structure
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid Aminotransferase From Burkholderia Pseudomallei Length = 328 Back     alignment and structure
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino Acid Aminotransferase. Length = 309 Back     alignment and structure
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From Escherichia Coli Length = 308 Back     alignment and structure
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid Aminotransferase Length = 308 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
3dth_A 372 Branched-chain amino acid aminotransferase; open t 1e-101
2a1h_A 365 Branched chain aminotransferase; fold type IV; HET 2e-98
2coi_A 386 Branched chain aminotransferase 1, cytosolic; PLP- 3e-96
2eiy_A 308 ILVE, branched-chain amino acid aminotransferase; 2e-13
3u0g_A 328 Putative branched-chain amino acid aminotransfera; 3e-13
1iye_A 309 Branched-chain amino acid aminotransferase; hexame 3e-13
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 2e-10
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 4e-10
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 1e-09
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 1e-09
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 3e-09
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 4e-08
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 2e-06
3qqm_A221 MLR3007 protein; structural genomics, joint center 1e-04
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365 Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386 Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308 Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328 Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309 Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272 Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315 Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285 Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246 Back     alignment and structure
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Length = 277 Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
3dth_A 372 Branched-chain amino acid aminotransferase; open t 100.0
3uzo_A 358 Branched-chain-amino-acid aminotransferase; BCAT, 100.0
3dtg_A 372 Branched-chain amino acid aminotransferase; open t 100.0
4dqn_A 345 Putative branched-chain amino acid aminotransfera; 100.0
2coi_A 386 Branched chain aminotransferase 1, cytosolic; PLP- 100.0
2a1h_A 365 Branched chain aminotransferase; fold type IV; HET 100.0
3u0g_A 328 Putative branched-chain amino acid aminotransfera; 100.0
2eiy_A 308 ILVE, branched-chain amino acid aminotransferase; 100.0
1iye_A 309 Branched-chain amino acid aminotransferase; hexame 100.0
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 100.0
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 99.98
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 99.98
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 99.97
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 99.97
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 99.94
3csw_A 285 BCAT, putative branched-chain-amino-acid aminotran 99.94
3qqm_A221 MLR3007 protein; structural genomics, joint center 99.87
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 99.79
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A* Back     alignment and structure
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A* Back     alignment and structure
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans} Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Back     alignment and structure
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 273
d2a1ha1 363 e.17.1.1 (A:3-365) Branched-chain aminoacid aminot 2e-45
d1iyea_ 304 e.17.1.1 (A:) Branched-chain aminoacid aminotransf 8e-19
d1daaa_277 e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill 6e-09
d1i2ka_269 e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric 8e-08
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  154 bits (390), Expect = 2e-45
 Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 1/175 (0%)

Query: 61  MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
              + L FG T  D+M  ++ ++  + + R+  +  + L P+S  L+Y   LFEGMKA++
Sbjct: 21  GPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80

Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
            +D Q+ LFRP  N  R+   A R+C+PS    + ++ +++    +K WVP     SLY+
Sbjct: 81  GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYV 140

Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-EGLAPLNLYVEDEFHRATPGG 234
           RP+L+G+ P LG++        V   PVG YF    + P++L  +  F RA  GG
Sbjct: 141 RPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 195
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304 Back     information, alignment and structure
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277 Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
d2a1ha1 363 Branched-chain aminoacid aminotransferase {Human ( 100.0
d1iyea_ 304 Branched-chain aminoacid aminotransferase {Escheri 100.0
d1i2ka_269 Aminodeoxychorismate lyase {Escherichia coli [TaxI 99.96
d1daaa_277 D-aminoacid aminotransferase {Bacillus sp., strain 99.95
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=7.2e-50  Score=374.83  Aligned_cols=211  Identities=32%  Similarity=0.561  Sum_probs=195.8

Q ss_pred             CCCCCCCCCcccCCceEEEEeecceEEcCEEeeCCCeeeCcCCCceeeCCeEEeEEEEEEcCCCeEeeeChhhHHHHHHH
Q 024053           61 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQT  140 (273)
Q Consensus        61 ~d~~~l~fg~~~td~m~~~~~~~~~w~nG~ivp~~~~~Is~~d~gl~YGdgvFEglrayr~~dG~i~lFrld~Hl~RL~~  140 (273)
                      .+.++|+||++|||||++++|++|.|.||+|+|+++++|||+|++||||||||||||+|+++||++++||||+|++||++
T Consensus        21 ~~~~~~~f~~~~~d~m~~~~~~~~~W~ng~ivp~~~~~isp~~~~l~YG~gvFEgiR~y~~~~g~i~lFrld~Hl~RL~~  100 (363)
T d2a1ha1          21 GPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLR  100 (363)
T ss_dssp             CTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHH
T ss_pred             CCcccCCCCCcccceEEEEEecCCeeeCCEEeEcccceeCcchhhccccceeeeeEEEEECCCCCEEEEccHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhcCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEEEeeCCCcccCCCCCeEEEEEEeecCCCccCC-CCCe
Q 024053          141 GAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPL  219 (273)
Q Consensus       141 Sa~~L~ip~p~~e~l~e~i~elv~~n~~~vP~~~~~~lYIRp~v~~~~~~lg~~p~~~~~~~I~~~P~~~y~~~~-~~gv  219 (273)
                      ||++|+|+.++.+++.++|.++|++|+.|+|..++.++||||+++++++.+++.++..+.+++++.|...+++.. .+++
T Consensus       101 Sa~~l~~~~~~~~~~~~~i~~~v~~n~~~v~~~~~~~~yiR~~v~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  180 (363)
T d2a1ha1         101 SAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPV  180 (363)
T ss_dssp             HHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSSSSCCCE
T ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHHHhhccccccccEEEEEeeccCCccccccCCcccceeEEEeeccccCccccccce
Confidence            999999998899999999999999999999998888999999999999999999888888888888888877655 4788


Q ss_pred             EEEEecCccccCCCCcCchhhhccHHHHHHH--------hccEEEEeCCCCEEEeccccc
Q 024053          220 NLYVEDEFHRATPGGAGGVKAISNYAPVSEY--------FSLMLFAKKLNDHNTTLPAIS  271 (273)
Q Consensus       220 ~l~v~~~~~R~~p~g~~~iKt~gNY~~~l~a--------~deaL~LD~~g~~~~~~~~~~  271 (273)
                      .+.+.+.+.|.++.+++.+|+++||+++++|        |||+||||..++..+|++++.
T Consensus       181 ~~~~~~~~~r~~~~~~~~~k~~~ny~~~~la~~eA~~~G~de~l~L~~~dg~v~E~~~sN  240 (363)
T d2a1ha1         181 SLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMN  240 (363)
T ss_dssp             EEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETTTTEEEEETTEE
T ss_pred             eEEEeeeccccCccccccccccccccchhhHHHHhhcCCceeeeecccccceEEeccceE
Confidence            8888877899999999999999999999877        999999998777888887764
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Back     information, alignment and structure