Citrus Sinensis ID: 024064

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE
ccccccccccccccccEEEEEcccccccccEEEEEccEEEEEEEEEccccEEEEcccccEEEEEEccEEEEEEEEccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEEEEEEEcccEEEEcccHHHHHcccccEEEEEcccccccccccccccccccccccEEEEHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cccccccccccccEEEEEEEEccccccccEEEEEcccEEEEEEEEccccccccEccccccEEEEccccEEEEEEEccccccHHHccccccccccccccccccccccEHHHHHHHHHHHccccccHHccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEEEEEccEEEEcccccccccccHcccccEEEEEcccEEEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcc
mevdradgrnpnqlrplacscsilhrahgsaswsqgfRFIQTSHFYHFNLFVFTSKCyfcywvgsgdtKVLAAvygpkagtkknenpekasieviwkprtgqigkpeKEYEIILKRTLQSICIltinpnttTSVIIQVvhddgallPCAINAACAALVDAGIPMKHLAVAICCcsaesgycildptklEEQKMKGFaylvfpnsilsvlpegsslvqgepmehgiitsvthgamsvddyFHCLERGRAASAKLSDFLRRSLQsklpgdlskae
mevdradgrnpnqlrPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPkagtkknenpekasieviwkprtgqigkpEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLrrslqsklpgdlskae
MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE
***************PLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGP**************IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRA*************************
*EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYG***************IEV******************ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ***********
*********NPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQS**********
*****ADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP*D*****
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MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query273 2.2.26 [Sep-21-2011]
Q84T68238 Exosome complex exonuclea yes no 0.871 1.0 0.598 3e-85
Q9NQT4235 Exosome complex component yes no 0.589 0.685 0.365 2e-26
Q9CRA8235 Exosome complex component yes no 0.571 0.663 0.361 2e-25
O29757258 Probable exosome complex yes no 0.765 0.810 0.241 7e-14
O59223249 Probable exosome complex yes no 0.567 0.622 0.297 3e-13
A2BKC0255 Probable exosome complex yes no 0.776 0.831 0.245 4e-13
Q9V119249 Probable exosome complex yes no 0.776 0.851 0.249 4e-13
B6YSI2249 Probable exosome complex yes no 0.567 0.622 0.292 7e-13
Q5JIR6249 Probable exosome complex yes no 0.567 0.622 0.297 8e-13
Q9YC03246 Probable exosome complex yes no 0.567 0.630 0.276 1e-12
>sp|Q84T68|EXOS5_ORYSJ Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica GN=RRP46 PE=1 SV=2 Back     alignment and function desciption
 Score =  315 bits (806), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/269 (59%), Positives = 192/269 (71%), Gaps = 31/269 (11%)

Query: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
           ME  RADGRNPNQLRP +C+ + L RAHGSA W+QG                        
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------ 36

Query: 61  YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
                 DT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK EKEYE+ LKRTLQS
Sbjct: 37  ------DTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQS 90

Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
           IC+LT++PNTTTSVI+QVV +DG+LLPCAINA CAALV AGIP+KHLAVAI C   E G 
Sbjct: 91  ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE 150

Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
            ILD  K EEQ++K FA+LVFPNS  S   +  +  + E  E G+ITS+THG MS +DYF
Sbjct: 151 VILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKE-EDSERGLITSITHGVMSEEDYF 209

Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDL 269
            C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 210 SCIERGLAASSRISDFMRTTLQKQAPGDV 238
Probable component of the exosome 3'->5' exoribonuclease complex, a complex that degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3'-untranslated regions. May form a homodimer separately from exosome complexes and function in DNA cleavage process. Binds double-stranded DNA (dsDNA) and single-stranded RNA (ssRNA), and possesses hydrolytic DNase and phosphorolytic RNase activities in vitro.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: -
>sp|Q9NQT4|EXOS5_HUMAN Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1 Back     alignment and function description
>sp|Q9CRA8|EXOS5_MOUSE Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1 Back     alignment and function description
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0493 PE=1 SV=1 Back     alignment and function description
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1549 PE=3 SV=1 Back     alignment and function description
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1 Back     alignment and function description
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1 Back     alignment and function description
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=TON_0030 PE=3 SV=1 Back     alignment and function description
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3 SV=1 Back     alignment and function description
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1447 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
224141741243 predicted protein [Populus trichocarpa] 0.886 0.995 0.753 1e-114
449511723243 PREDICTED: exosome complex exonuclease R 0.886 0.995 0.716 1e-108
449465139243 PREDICTED: exosome complex exonuclease R 0.886 0.995 0.713 1e-108
297819162242 hypothetical protein ARALYDRAFT_485002 [ 0.882 0.995 0.709 1e-106
15231368239 exosome complex component RRP46 [Arabido 0.849 0.970 0.721 1e-106
224089018243 predicted protein [Populus trichocarpa] 0.838 0.942 0.733 1e-105
225429944245 PREDICTED: exosome complex exonuclease R 0.886 0.987 0.731 1e-104
296081851243 unnamed protein product [Vitis vinifera] 0.886 0.995 0.731 1e-104
356568370243 PREDICTED: exosome complex exonuclease R 0.886 0.995 0.698 1e-104
356532014243 PREDICTED: exosome complex exonuclease R 0.886 0.995 0.705 1e-104
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa] gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/272 (75%), Positives = 225/272 (82%), Gaps = 30/272 (11%)

Query: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
           ME DR DGR+P+QLRPL+C+ ++LHRAHGSASWSQG                        
Sbjct: 1   MESDRDDGRSPSQLRPLSCARNVLHRAHGSASWSQG------------------------ 36

Query: 61  YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
                 DTKVLAAVYGPKAGTKKNENPEKA IEVIWKP+TGQIGK EKE+E+ILKRTLQS
Sbjct: 37  ------DTKVLAAVYGPKAGTKKNENPEKACIEVIWKPKTGQIGKLEKEFEMILKRTLQS 90

Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
           ICILT+NPNTTTS+I+QVV+DDGALL CAINAACAALVDAGIPMKHLAVAICCC AE GY
Sbjct: 91  ICILTLNPNTTTSIIVQVVNDDGALLVCAINAACAALVDAGIPMKHLAVAICCCLAEGGY 150

Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
            ILDPTKLEEQKM+GF YLVFPNS++SVLPEGSS V+GEPMEHGIITSVTHG MSV++Y 
Sbjct: 151 VILDPTKLEEQKMRGFTYLVFPNSVVSVLPEGSSHVEGEPMEHGIITSVTHGVMSVEEYL 210

Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
            CLERGRAAS KLSDFLRRSLQS+LP D SKA
Sbjct: 211 KCLERGRAASTKLSDFLRRSLQSQLPSDSSKA 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449511723|ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449465139|ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp. lyrata] gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|79314404|ref|NP_001030817.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|79314427|ref|NP_001030818.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|79314448|ref|NP_001030819.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|145332769|ref|NP_001078250.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|334185757|ref|NP_001190019.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana] gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana] gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana] gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana] gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana] gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa] gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225429944|ref|XP_002281273.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356568370|ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356532014|ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
TAIR|locus:2075351239 AT3G46210 "AT3G46210" [Arabido 0.732 0.836 0.800 1.1e-101
UNIPROTKB|Q84T68238 RRP46 "Exosome complex exonucl 0.754 0.865 0.663 9.4e-82
UNIPROTKB|Q9NQT4235 EXOSC5 "Exosome complex compon 0.490 0.570 0.426 1e-34
UNIPROTKB|E1BAG2235 EXOSC5 "Uncharacterized protei 0.490 0.570 0.426 7e-34
RGD|1307861235 Exosc5 "exosome component 5" [ 0.490 0.570 0.419 8.8e-34
MGI|MGI:107889235 Exosc5 "exosome component 5" [ 0.490 0.570 0.419 1.1e-33
ZFIN|ZDB-GENE-060503-675243 exosc5 "exosome component 5" [ 0.556 0.625 0.374 5.1e-32
TAIR|locus:2060111150 AT2G07110 "AT2G07110" [Arabido 0.161 0.293 0.727 3e-21
TAIR|locus:2076710241 RRP41 "AT3G61620" [Arabidopsis 0.421 0.477 0.380 2.6e-15
MGI|MGI:1923576245 Exosc4 "exosome component 4" [ 0.692 0.771 0.251 4.2e-14
TAIR|locus:2075351 AT3G46210 "AT3G46210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 863 (308.9 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
 Identities = 161/201 (80%), Positives = 180/201 (89%)

Query:    62 WVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 121
             W   GDTKVLAAVYGPKAGTKKNEN EKA  EVIWKP++GQIGK EKEYE+ILKRT+QSI
Sbjct:    33 W-SQGDTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSI 91

Query:   122 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 181
             C+LT+NPNTTTSVIIQVVHDDG+LLPCAINAACAALVDAGIPMKHLAVAICCC AE+GY 
Sbjct:    92 CVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYL 151

Query:   182 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 241
             +LDP KLEE+KM  FAYLVFPN+ LSVLPEGSS+ +GEP+EHGIITS+THG MSVDDYF 
Sbjct:   152 VLDPNKLEEKKMTAFAYLVFPNTTLSVLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFL 211

Query:   242 CLERGRAASAKLSDFLRRSLQ 262
             C+E GRAA+A LS F R++ Q
Sbjct:   212 CVENGRAATASLSAFFRKNFQ 232
GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS
GO:0003723 "RNA binding" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006396 "RNA processing" evidence=ISS
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0051604 "protein maturation" evidence=RCA
UNIPROTKB|Q84T68 RRP46 "Exosome complex exonuclease RRP46 homolog" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQT4 EXOSC5 "Exosome complex component RRP46" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BAG2 EXOSC5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1307861 Exosc5 "exosome component 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107889 Exosc5 "exosome component 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-675 exosc5 "exosome component 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2060111 AT2G07110 "AT2G07110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076710 RRP41 "AT3G61620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1923576 Exosc4 "exosome component 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84T68EXOS5_ORYSJ3, ., 1, ., 1, 3, ., -0.59850.87171.0yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
cd11372199 cd11372, RNase_PH_RRP46, RRP46 subunit of eukaryot 2e-76
cd11358218 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucl 2e-34
cd11370226 cd11370, RNase_PH_RRP41, RRP41 subunit of eukaryot 5e-33
COG0689230 COG0689, Rph, RNase PH [Translation, ribosomal str 1e-29
pfam01138129 pfam01138, RNase_PH, 3' exoribonuclease family, do 1e-24
cd11371210 cd11371, RNase_PH_MTR3, MTR3 subunit of eukaryotic 2e-24
PRK03983244 PRK03983, PRK03983, exosome complex exonuclease Rr 1e-23
TIGR02065230 TIGR02065, ECX1, archaeal exosome-like complex exo 2e-21
cd11366214 cd11366, RNase_PH_archRRP41, RRP41 subunit of arch 1e-17
PLN00207 891 PLN00207, PLN00207, polyribonucleotide nucleotidyl 2e-07
PRK11824 693 PRK11824, PRK11824, polynucleotide phosphorylase/p 9e-05
TIGR03591 684 TIGR03591, polynuc_phos, polyribonucleotide nucleo 2e-04
cd08887185 cd08887, RHO_alpha_C_3, C-terminal catalytic domai 0.001
COG2123272 COG2123, COG2123, RNase PH-related exoribonuclease 0.002
>gnl|CDD|206777 cd11372, RNase_PH_RRP46, RRP46 subunit of eukaryotic exosome Back     alignment and domain information 
 Score =  230 bits (589), Expect = 2e-76
 Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 46/245 (18%)

Query: 14  LRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAA 73
           LRPL+C   +L RA GSA +SQG                              DT VLAA
Sbjct: 1   LRPLSCELGLLSRADGSARFSQG------------------------------DTSVLAA 30

Query: 74  VYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 133
           VYGP     + E P++A++EVI +P++G  G  EK  E++L+ TL+ I +L ++P T  S
Sbjct: 31  VYGPIEVKLRKELPDRATLEVIVRPKSGLPGVKEKLLELLLRSTLEPIILLHLHPRTLIS 90

Query: 134 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 193
           V++QV+ DDG+LL CAINAAC AL+DAG+PMK L  A+ C   E G  ILDPT  EE++ 
Sbjct: 91  VVLQVLQDDGSLLACAINAACLALLDAGVPMKGLFAAVTCAITEDGEIILDPTAEEEKEA 150

Query: 194 KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 253
           K  A   F +                     ++ S + G+ + ++ F CLE  +AASA +
Sbjct: 151 KAVATFAFDSGEEK----------------NLVLSESEGSFTEEELFACLELAQAASAAI 194

Query: 254 SDFLR 258
            DF R
Sbjct: 195 FDFYR 199

The RRP46 subunit of eukaryotic exosome is a member of the RNase_PH family, named after the bacterial Ribonuclease PH, a 3'-5' exoribonuclease. Structurally all members of this family form hexameric rings (trimers of Rrp41-Rrp45, Rrp46-Rrp43, and Mtr3-Rrp42 dimers). The eukaryotic exosome core is composed of six individually encoded RNase PH-like subunits and three additional proteins (Rrp4, Csl4 and Rrp40) that form a stable cap and contain RNA-binding domains. The RNase PH-like subunits are no longer phosphorolytic enzymes, the exosome directly associates with Rrp44 and Rrp6, hydrolytic exoribonucleases related to bacterial RNase II/R and RNase D. The exosome plays an important role in RNA turnover. It plays a crucial role in the maturation of stable RNA species such as rRNA, snRNA and snoRNA, quality control of mRNA, and the degradation of RNA processing by-products and non-coding transcripts. Length = 199
>gnl|CDD|206766 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucleases Back     alignment and domain information
>gnl|CDD|206775 cd11370, RNase_PH_RRP41, RRP41 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|223761 COG0689, Rph, RNase PH [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216323 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1 Back     alignment and domain information
>gnl|CDD|206776 cd11371, RNase_PH_MTR3, MTR3 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|235187 PRK03983, PRK03983, exosome complex exonuclease Rrp41; Provisional Back     alignment and domain information
>gnl|CDD|131120 TIGR02065, ECX1, archaeal exosome-like complex exonuclease 1 Back     alignment and domain information
>gnl|CDD|206771 cd11366, RNase_PH_archRRP41, RRP41 subunit of archaeal exosome Back     alignment and domain information
>gnl|CDD|215104 PLN00207, PLN00207, polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>gnl|CDD|176896 cd08887, RHO_alpha_C_3, C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>gnl|CDD|225034 COG2123, COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 273
TIGR02065230 ECX1 archaeal exosome-like complex exonuclease 1. 100.0
PRK03983244 exosome complex exonuclease Rrp41; Provisional 100.0
KOG1069217 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
PRK00173238 rph ribonuclease PH; Reviewed 100.0
TIGR01966236 RNasePH ribonuclease PH. This bacterial enzyme, ri 100.0
KOG1068245 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
COG0689230 Rph RNase PH [Translation, ribosomal structure and 100.0
PRK04282271 exosome complex RNA-binding protein Rrp42; Provisi 100.0
TIGR03591 684 polynuc_phos polyribonucleotide nucleotidyltransfe 100.0
PRK11824 693 polynucleotide phosphorylase/polyadenylase; Provis 100.0
COG2123272 RNase PH-related exoribonuclease [Translation, rib 100.0
TIGR02696 719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 100.0
PLN00207 891 polyribonucleotide nucleotidyltransferase; Provisi 100.0
KOG1614291 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
TIGR03591 684 polynuc_phos polyribonucleotide nucleotidyltransfe 99.97
PRK11824 693 polynucleotide phosphorylase/polyadenylase; Provis 99.97
KOG1612288 consensus Exosomal 3'-5' exoribonuclease complex, 99.95
PF01138132 RNase_PH: 3' exoribonuclease family, domain 1 This 99.95
PLN00207 891 polyribonucleotide nucleotidyltransferase; Provisi 99.94
KOG1613298 consensus Exosomal 3'-5' exoribonuclease complex, 99.92
KOG1067 760 consensus Predicted RNA-binding polyribonucleotide 99.83
TIGR02696 719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 99.8
COG1185 692 Pnp Polyribonucleotide nucleotidyltransferase (pol 99.72
COG1185 692 Pnp Polyribonucleotide nucleotidyltransferase (pol 99.71
KOG1067 760 consensus Predicted RNA-binding polyribonucleotide 99.51
PF0372568 RNase_PH_C: 3' exoribonuclease family, domain 2 Th 98.93
>TIGR02065 ECX1 archaeal exosome-like complex exonuclease 1 Back     alignment and domain information 
Probab=100.00  E-value=3.9e-46  Score=331.08  Aligned_cols=216  Identities=28%  Similarity=0.417  Sum_probs=192.6

Q ss_pred             CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064            2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT   81 (273)
Q Consensus         2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~   81 (273)
                      +++|+|||+++|+|++++++|++++++|||++++|                              +|+|+|+|+||++.+
T Consensus         6 ~~~R~DGR~~~e~R~~~~~~g~~~~a~GSa~~~~G------------------------------~T~Vl~~V~gp~e~~   55 (230)
T TIGR02065         6 DGVRLDGRKPDELRPIKIEAGVLKNADGSAYVEFG------------------------------GTKIIAAVYGPREMH   55 (230)
T ss_pred             CCcCCCCCCcccccCeEEEECCCCCCCeEEEEEEC------------------------------CcEEEEEEeCCCccc
Confidence            68999999999999999999999999999999999                              999999999999764


Q ss_pred             C-CCCCCceEEEEEEE--ecCCC------CCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHHHH
Q 024064           82 K-KNENPEKASIEVIW--KPRTG------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINA  152 (273)
Q Consensus        82 ~-~~~~~~~~~l~v~~--~p~~g------~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~inA  152 (273)
                      . ..+.|+++.++|++  .|+++      .+++.+++++++|+++|++++.++.||++.|+|+++||++||++++|++||
T Consensus        56 ~~~~~~~~~~~l~v~~~~~~~a~~~~~~~~~~~~~~~~s~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~DG~~~~aai~a  135 (230)
T TIGR02065        56 PRHLQLPDRAVLRVRYHMAPFSTDERKRPGPSRREIEISKVIREALEPAILLEQFPRTAIDVFIEVLQADAGTRCAGLTA  135 (230)
T ss_pred             cccccCCCceEEEEEEEeCCcccCCccCCCCCccHHHHHHHHHHHHHHHhChhhcCCeEEEEEEEEEEcCCCHHHHHHHH
Confidence            3 34568888877666  47643      345678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecC
Q 024064          153 ACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG  232 (273)
Q Consensus       153 a~lAL~dagIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G  232 (273)
                      +++||.|+||||+++++++++++. ++.+++||+.+|++.+.+.+++++..+                 ..++++++..|
T Consensus       136 a~lAL~dagIp~~~~v~avtv~~~-~~~~v~Dpt~~Ee~~~~~~l~va~~~~-----------------~~~i~~i~~~g  197 (230)
T TIGR02065       136 ASLALADAGIPMRDLVVGVAVGKV-DGVVVLDLNEEEDMYGEADMPVAMMPK-----------------LGEITLLQLDG  197 (230)
T ss_pred             HHHHHHHcCCccccceeeEEEEEE-CCeEEECCCHHHhhcCCCceEEEEeCC-----------------CCCEEEEEEec
Confidence            999999999999999999999986 889999999999999999999988421                 12344555789


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024064          233 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL  265 (273)
Q Consensus       233 ~~~~~~~~~~l~~A~~~~~~i~~~i~~~l~~~~  265 (273)
                      .++++++++|++.|.++|++++++|+++|++++
T Consensus       198 ~~~~e~~~~~l~~a~~~~~~l~~~~~~~l~~~~  230 (230)
T TIGR02065       198 DMTPDEFRQALDLAVKGIKIIYQIQREALKNKY  230 (230)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999998763

This family contains the archaeal protein orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt.
>PRK03983 exosome complex exonuclease Rrp41; Provisional Back     alignment and domain information
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00173 rph ribonuclease PH; Reviewed Back     alignment and domain information
>TIGR01966 RNasePH ribonuclease PH Back     alignment and domain information
>KOG1068 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>KOG1614 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>KOG1612 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01138 RNase_PH: 3' exoribonuclease family, domain 1 This Prosite family only includes Ribonuclease PH; InterPro: IPR001247 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>KOG1613 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
3hkm_A246 Crystal Structure Of Rice(Oryza Sativa) Rrp46 Lengt 2e-86
2nn6_D237 Structure Of The Human Rna Exosome Composed Of Rrp4 1e-27
2ba0_F258 Archaeal Exosome Core Length = 258 6e-15
3m7n_D258 Archaeoglobus Fulgidus Exosome With Rna Bound To Th 9e-15
2pnz_A249 Crystal Structure Of The P. Abyssi Exosome Rnase Ph 3e-14
2nn6_B249 Structure Of The Human Rna Exosome Composed Of Rrp4 2e-13
2br2_B248 Rnase Ph Core Of The Archaeal Exosome Length = 248 1e-12
2wnr_B240 The Structure Of Methanothermobacter Thermautotroph 2e-12
3l7z_B245 Crystal Structure Of The S. Solfataricus Archaeal E 2e-12
2je6_B250 Structure Of A 9-Subunit Archaeal Exosome Length = 2e-12
4ifd_D245 Crystal Structure Of An 11-subunit Eukaryotic Exoso 8e-10
3krn_A222 Crystal Structure Of C. Elegans Cell-Death-Related 2e-09
4ifd_B248 Crystal Structure Of An 11-subunit Eukaryotic Exoso 5e-07
2wp8_B246 Yeast Rrp44 Nuclease Length = 246 7e-07
3cdi_A 723 Crystal Structure Of E. Coli Pnpase Length = 723 3e-05
3h1c_A549 Crystal Structure Of Polynucleotide Phosphorylase ( 3e-05
3gcm_A549 Crystal Structure Of E. Coli Polynucleotide Phospho 3e-05
3cdj_A559 Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCA 3e-05
>pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46 Length = 246 Back     alignment and structure 
Iteration: 1

 Score =  315 bits (806), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 161/269 (59%), Positives = 192/269 (71%), Gaps = 31/269 (11%)
Query: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
           ME  RADGRNPNQLRP +C+ + L RAHGSA W+QG                        
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------ 36
Query: 61  YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
                 DT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK EKEYE+ LKRTLQS
Sbjct: 37  ------DTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQS 90
Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
           IC+LT++PNTTTSVI+QVV +DG+LLPCAINA CAALV AGIP+KHLAVAI C   E G 
Sbjct: 91  ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE 150
Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
            ILD  K EEQ++K FA+LVFPNS  S   +  +  + E  E G+ITS+THG MS +DYF
Sbjct: 151 VILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKE-EDSERGLITSITHGVMSEEDYF 209
Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDL 269
            C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 210 SCIERGLAASSRISDFMRTTLQKQAPGDV 238
>pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 237 Back     alignment and structure
>pdb|2BA0|F Chain F, Archaeal Exosome Core Length = 258 Back     alignment and structure
>pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site Length = 258 Back     alignment and structure
>pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp Length = 249 Back     alignment and structure
>pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 249 Back     alignment and structure
>pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome Length = 248 Back     alignment and structure
>pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly Length = 240 Back     alignment and structure
>pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome Length = 245 Back     alignment and structure
>pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Length = 250 Back     alignment and structure
>pdb|4IFD|D Chain D, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 245 Back     alignment and structure
>pdb|3KRN|A Chain A, Crystal Structure Of C. Elegans Cell-Death-Related Nuclease 5(Crn-5) Length = 222 Back     alignment and structure
>pdb|4IFD|B Chain B, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 248 Back     alignment and structure
>pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease Length = 246 Back     alignment and structure
>pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase Length = 723 Back     alignment and structure
>pdb|3H1C|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate Length = 549 Back     alignment and structure
>pdb|3GCM|A Chain A, Crystal Structure Of E. Coli Polynucleotide Phosphorylase Bound To Rna And Rnase E Length = 549 Back     alignment and structure
>pdb|3CDJ|A Chain A, Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCATED Pnpase Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
3hkm_A246 OS03G0854200 protein; RNAse PH domain, phosphoryla 4e-70
2nn6_D237 Exosome complex exonuclease RRP46; RNA, exosome, P 1e-61
3krn_A222 Protein C14A4.5, confirmed by transcript evidence; 2e-56
2nn6_F272 MTR3, exosome component 6; RNA, exosome, PM/SCL, p 1e-41
2wp8_B246 Exosome complex component SKI6; nucleus, hydrolase 1e-34
2nn6_B249 Exosome complex exonuclease RRP41; RNA, exosome, P 3e-25
2wnr_B240 Probable exosome complex exonuclease 1; phosphate 2e-24
3b4t_A262 Ribonuclease PH; RNAse, tRNA nucleotidyltransferas 6e-24
1udn_A255 Ribonuclease PH, RNAse PH; transferase, riken stru 5e-22
2po1_A249 Probable exosome complex exonuclease 1; RNAse PH, 7e-22
1r6l_A239 Ribonuclease PH; beta-alpha-beta-alpha fold, hexam 2e-20
3dd6_A255 Ribonuclease PH; exoribonuclease, tRNA maturation, 8e-20
2je6_B250 RRP41, exosome complex exonuclease 1; nuclease, hy 5e-19
3m7n_D258 Probable exosome complex exonuclease 1; exosome, R 2e-18
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 3e-18
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 3e-18
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 1e-17
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 5e-17
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 1e-16
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 4e-16
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 5e-16
1oys_A245 Ribonuclease PH; transferase, tRNA processing; 2.4 5e-13
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 3e-11
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 2e-05
3cdi_A 723 Polynucleotide phosphorylase; mRNA turnover, RNAse 2e-05
1e3p_A 757 Guanosine pentaphosphate synthetase; polyribonucle 2e-05
4aid_A 726 Polyribonucleotide nucleotidyltransferase; transfe 2e-05
3gme_A549 Polyribonucleotide nucleotidyltransferase; protein 3e-05
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Length = 246 Back     alignment and structure
 Score =  215 bits (549), Expect = 4e-70
 Identities = 161/272 (59%), Positives = 193/272 (70%), Gaps = 31/272 (11%)

Query: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFC 60
           ME  RADGRNPNQLRP +C+ + L RAHGSA W+QG                        
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------ 36

Query: 61  YWVGSGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 120
                 DT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK EKEYE+ LKRTLQS
Sbjct: 37  ------DTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQS 90

Query: 121 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 180
           IC+LT++PNTTTSVI+QVV +DG+LLPCAINA CAALV AGIP+KHLAVAI C   E G 
Sbjct: 91  ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE 150

Query: 181 CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 240
            ILD  K EEQ++K FA+LVFPNS  S   +  +  + E  E G+ITS+THG MS +DYF
Sbjct: 151 VILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPN-QKEEDSERGLITSITHGVMSEEDYF 209

Query: 241 HCLERGRAASAKLSDFLRRSLQSKLPGDLSKA 272
            C+ERG AAS+++SDF+R +LQ + PGD+ + 
Sbjct: 210 SCIERGLAASSRISDFMRTTLQKQAPGDVLEH 241
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 237 Back     alignment and structure
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Length = 222 Back     alignment and structure
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 272 Back     alignment and structure
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 249 Back     alignment and structure
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 240 Back     alignment and structure
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 262 Back     alignment and structure
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Length = 255 Back     alignment and structure
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A* Length = 249 Back     alignment and structure
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Length = 239 Back     alignment and structure
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Length = 255 Back     alignment and structure
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B Length = 250 Back     alignment and structure
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E Length = 258 Back     alignment and structure
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 271 Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 278 Back     alignment and structure
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Length = 277 Back     alignment and structure
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 305 Back     alignment and structure
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Length = 277 Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Length = 259 Back     alignment and structure
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 358 Back     alignment and structure
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Length = 245 Back     alignment and structure
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 305 Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Length = 630 Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Length = 723 Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Length = 757 Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Length = 726 Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Length = 549 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
3hkm_A246 OS03G0854200 protein; RNAse PH domain, phosphoryla 100.0
2nn6_D237 Exosome complex exonuclease RRP46; RNA, exosome, P 100.0
2wnr_B240 Probable exosome complex exonuclease 1; phosphate 100.0
3m7n_D258 Probable exosome complex exonuclease 1; exosome, R 100.0
2po1_A249 Probable exosome complex exonuclease 1; RNAse PH, 100.0
2nn6_B249 Exosome complex exonuclease RRP41; RNA, exosome, P 100.0
2wp8_B246 Exosome complex component SKI6; nucleus, hydrolase 100.0
2je6_B250 RRP41, exosome complex exonuclease 1; nuclease, hy 100.0
2nn6_F272 MTR3, exosome component 6; RNA, exosome, PM/SCL, p 100.0
3b4t_A262 Ribonuclease PH; RNAse, tRNA nucleotidyltransferas 100.0
3dd6_A255 Ribonuclease PH; exoribonuclease, tRNA maturation, 100.0
1r6l_A239 Ribonuclease PH; beta-alpha-beta-alpha fold, hexam 100.0
1oys_A245 Ribonuclease PH; transferase, tRNA processing; 2.4 100.0
1udn_A255 Ribonuclease PH, RNAse PH; transferase, riken stru 100.0
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 100.0
3krn_A222 Protein C14A4.5, confirmed by transcript evidence; 100.0
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 100.0
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 100.0
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 100.0
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 100.0
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 100.0
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 100.0
3gme_A549 Polyribonucleotide nucleotidyltransferase; protein 100.0
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 100.0
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 100.0
4aid_A 726 Polyribonucleotide nucleotidyltransferase; transfe 100.0
1e3p_A 757 Guanosine pentaphosphate synthetase; polyribonucle 100.0
3cdi_A 723 Polynucleotide phosphorylase; mRNA turnover, RNAse 100.0
3u1k_A 630 Polyribonucleotide nucleotidyltransferase 1, MITO; 99.97
3gme_A 549 Polyribonucleotide nucleotidyltransferase; protein 99.96
4aid_A 726 Polyribonucleotide nucleotidyltransferase; transfe 99.95
3cdi_A 723 Polynucleotide phosphorylase; mRNA turnover, RNAse 99.95
1e3p_A 757 Guanosine pentaphosphate synthetase; polyribonucle 99.95
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Back     alignment and structure
Probab=100.00  E-value=7.5e-52  Score=369.93  Aligned_cols=239  Identities=67%  Similarity=1.051  Sum_probs=199.2

Q ss_pred             CCCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCC
Q 024064            1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAG   80 (273)
Q Consensus         1 ~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~   80 (273)
                      ||+.|+|||+++|+|++++++|++++++|||+|++|                              +|+|+|+|+||++.
T Consensus         1 meg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G------------------------------~T~Vl~~V~g~~~~   50 (246)
T 3hkm_A            1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQG------------------------------DTIVLAAVYGPKPG   50 (246)
T ss_dssp             ----CTTSCCTTCCCCEEEEECCCSSSSEEEEEEET------------------------------TEEEEEEECCCEEC
T ss_pred             CCCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEEC------------------------------CeEEEEEEecCcCC
Confidence            899999999999999999999999999999999999                              99999999999977


Q ss_pred             CCCCCCCceEEEEEEEecCCCCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHHHHHHHHHHhC
Q 024064           81 TKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA  160 (273)
Q Consensus        81 ~~~~~~~~~~~l~v~~~p~~g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~inAa~lAL~da  160 (273)
                      +++.+.|+++.++|+|+|+.|++++++++++++|+|+|+++|+++.||+|.|+|+++||++||++++|++||+++||+||
T Consensus        51 ~~~~~~~~~~~~~~~~~P~~g~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~da  130 (246)
T 3hkm_A           51 TRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFA  130 (246)
T ss_dssp             CCTTSCSSSCEEEEEEECSSSCCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCccEEEEEEeCCCCCCCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhc
Confidence            67778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccceeEEEEEEeeCCeEEeCCCHHHHhhccccEEEEecCCcccccCCCCccccCCccccceEEEEecCCCCHHHHH
Q 024064          161 GIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF  240 (273)
Q Consensus       161 gIp~~~~~~avsv~~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~~~~~~~  240 (273)
                      ||||+++++|+++|++.++.+++||+.+|+..+++.++++++..+...+.+......+++ ..+++++.+.|.++++++.
T Consensus       131 giP~~~~v~avs~g~~~~g~~llDpt~~Ee~~~~~~~~va~~~~~i~~lq~~g~~~~~~~-~~~~i~~~~~g~~~~~~l~  209 (246)
T 3hkm_A          131 GIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKEEDS-ERGLITSITHGVMSEEDYF  209 (246)
T ss_dssp             TCCBSSCEEEEEEEECTTSCEEESCCHHHHTTCSEEEEEEEEC---------------------CCCEEEEECEEHHHHH
T ss_pred             CCCCCCceEEEEEEEEECCEEEECCCHHHHhcCCeeEEEEEeCCceEEEeeccccccccc-ccceeeeeccCCcCHHHHH
Confidence            999999999999999767899999999999999999999998754332221110011122 3456666667899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCcCC
Q 024064          241 HCLERGRAASAKLSDFLRRSLQSKLPGDLS  270 (273)
Q Consensus       241 ~~l~~A~~~~~~i~~~i~~~l~~~~~~~~~  270 (273)
                      +|++.|.+++++|.++|+++|+++..+|+.
T Consensus       210 ~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~  239 (246)
T 3hkm_A          210 SCIERGLAASSRISDFMRTTLQKQAPGDVL  239 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhchhh
Confidence            999999999999999999999999999874
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E Back     alignment and structure
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A* Back     alignment and structure
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B Back     alignment and structure
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Back     alignment and structure
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Back     alignment and structure
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Back     alignment and structure
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Back     alignment and structure
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Back     alignment and structure
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Back     alignment and structure
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 273
d2nn6d1122 d.14.1.4 (D:25-146) Exosome complex exonuclease RR 7e-21
d1r6la1151 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseu 8e-21
d1udsa1149 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aqui 4e-19
d2je6b1148 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, 9e-18
d2ba0d1144 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, 2e-17
d1oysa1151 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Baci 3e-17
d2nn6b1145 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP 6e-17
d2nn6f1147 d.14.1.4 (F:29-175) Exosome complex exonuclease MT 7e-17
d2nn6c1181 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP 1e-16
d2ba0g1176 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,E 6e-16
d2je6a1191 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,E 5e-15
d1e3ha3137 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/ 2e-14
d2nn6e1187 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP 3e-14
d2nn6a1184 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP 4e-11
d2nn6d289 d.101.1.1 (D:147-235) Exosome complex exonuclease 4e-08
d1e3ha2149 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/gu 1e-04
d2nn6a2118 d.101.1.1 (A:185-302) Exosome complex exonuclease 0.001
d2nn6c289 d.101.1.1 (C:188-276) Exosome complex exonuclease 0.004
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease RRP46
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 7e-21
 Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 30/150 (20%)

Query: 13  QLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLA 72
            LR  AC  ++L R  GSAS+ QG                              DT VLA
Sbjct: 3   SLRHFACEQNLLSRPDGSASFLQG------------------------------DTSVLA 32

Query: 73  AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTT 132
            VYGP       E   KA++EVI +P+ G  G  EK  E +++ T +++ + T++P T+ 
Sbjct: 33  GVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSI 92

Query: 133 SVIIQVVHDDGALLPCAINAACAALVDAGI 162
           +V++QVV D G+LL C +NAAC ALVDAG+
Sbjct: 93  TVVLQVVSDAGSLLACCLNAACMALVDAGV 122
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 151 Back     information, alignment and structure
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Length = 149 Back     information, alignment and structure
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 148 Back     information, alignment and structure
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 144 Back     information, alignment and structure
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Length = 151 Back     information, alignment and structure
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 147 Back     information, alignment and structure
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 176 Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 191 Back     information, alignment and structure
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 137 Back     information, alignment and structure
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 187 Back     information, alignment and structure
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 149 Back     information, alignment and structure
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
d2nn6b1145 Exosome complex exonuclease RRP41 {Human (Homo sap 100.0
d2ba0d1144 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 100.0
d2je6b1148 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 100.0
d1udsa1149 Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId 100.0
d2nn6d1122 Exosome complex exonuclease RRP46 {Human (Homo sap 99.98
d1r6la1151 Ribonuclease PH, domain 1 {Pseudomonas aeruginosa 99.97
d1oysa1151 Ribonuclease PH, domain 1 {Bacillus subtilis [TaxI 99.97
d1e3ha3137 Polynucleotide phosphorylase/guanosine pentaphosph 99.96
d2ba0g1176 Exosome complex exonuclease 2,ECX2 {Archaeoglobus 99.96
d2nn6f1147 Exosome complex exonuclease MTR3 {Human (Homo sapi 99.95
d2nn6c1181 Exosome complex exonuclease RRP43 {Human (Homo sap 99.95
d2je6a1191 Exosome complex exonuclease 2,ECX2 {Sulfolobus sol 99.95
d2nn6e1187 Exosome complex exonuclease RRP42 {Human (Homo sap 99.94
d2nn6a1184 Exosome complex exonuclease RRP45 {Human (Homo sap 99.93
d1e3ha2149 Polynucleotide phosphorylase/guanosine pentaphosph 99.86
d2nn6d289 Exosome complex exonuclease RRP46 {Human (Homo sap 99.67
d2je6b286 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 99.57
d2nn6b290 Exosome complex exonuclease RRP41 {Human (Homo sap 99.53
d2je6a284 Exosome complex exonuclease 2, ECX2 {Sulfolobus so 99.48
d2nn6c289 Exosome complex exonuclease RRP43 {Human (Homo sap 99.44
d2nn6a2118 Exosome complex exonuclease RRP45 {Human (Homo sap 99.43
d1r6la288 Ribonuclease PH, domain 2 {Pseudomonas aeruginosa 99.4
d2nn6e294 Exosome complex exonuclease RRP42 {Human (Homo sap 99.38
d2ba0g279 Exosome complex exonuclease 2, ECX2 {Archaeoglobus 99.33
d2ba0d299 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 99.32
d2nn6f295 Exosome complex exonuclease MTR3 {Human (Homo sapi 99.22
d1oysa286 Ribonuclease PH, domain 2 {Bacillus subtilis [TaxI 99.18
d1udsa2105 Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId 99.12
d1e3ha5111 Polynucleotide phosphorylase/guanosine pentaphosph 97.79
d1e3ha696 Polynucleotide phosphorylase/guanosine pentaphosph 94.86
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease RRP41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=231.11  Aligned_cols=131  Identities=29%  Similarity=0.487  Sum_probs=116.7

Q ss_pred             CCCCCCCCCCCCCcccEEEeCCCCCCCceEEEEeCcccccccccccccceeeccccccccccCCCCcEEEEEEEcccCCC
Q 024064            2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGFRFIQTSHFYHFNLFVFTSKCYFCYWVGSGDTKVLAAVYGPKAGT   81 (273)
Q Consensus         2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~T~Vl~~V~gp~~~~   81 (273)
                      |++|+|||+++|+|++++++|++++++|||+|++|                              +|+|+|+|+||++.+
T Consensus         4 ~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G------------------------------~T~Vi~~V~gp~~~~   53 (145)
T d2nn6b1           4 QGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQG------------------------------NTKALAVVYGPHEIR   53 (145)
T ss_dssp             TTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEES------------------------------SCEEEEEEEEEEECC
T ss_pred             CCccCCCCCCCCccCeEEEECCCCCCCceEEEEeC------------------------------CceEEEEEEeccccc
Confidence            68999999999999999999999999999999999                              999999999998654


Q ss_pred             C--CCCCCceEEEEEEEe--cCC-------CCCCchHHHHHHHHHHHhhhhhhcCCCCCcEEEEEEEEEecCCCchhHHH
Q 024064           82 K--KNENPEKASIEVIWK--PRT-------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI  150 (273)
Q Consensus        82 ~--~~~~~~~~~l~v~~~--p~~-------g~~~~~~~~l~~~l~~~l~s~i~~~~~p~~~I~i~v~Vl~~dG~ll~a~i  150 (273)
                      .  ..+.++++.++|++.  |++       +..++++++++++|+++|+++|+++.||++.|+|+|+||++|||+++||+
T Consensus        54 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~~~~~~~~~I~v~v~VL~~DG~l~~a~i  133 (145)
T d2nn6b1          54 GSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACV  133 (145)
T ss_dssp             SSSCCCCCSSCCEEEEEEECTTTSSSCCCTTTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHH
T ss_pred             cchhhccccceeEEEEeeecCcccccccccCCCCchhhhHHHHHHHhhhcccchHhhCceeeEEEEEEEeCCCCHHHHHH
Confidence            3  345678877777665  443       22345688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 024064          151 NAACAALVDAGI  162 (273)
Q Consensus       151 nAa~lAL~dagI  162 (273)
                      ||+++||+||||
T Consensus       134 ~aa~lAL~daGI  145 (145)
T d2nn6b1         134 NAATLAVLDAGI  145 (145)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999997
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure