Citrus Sinensis ID: 024069

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccEEEccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MDAVKanlggkkvIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIqdtirsppaeyktmKKATLFSIIVTTTFYLLCGCmgyaafgdlapnnlltgfgfynpywlidIANAAIVVHLVGAYQVFCQPLFAFVEKwsakkwpksdlvtaeyeipipfwgvYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILgamgfwpltvyFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDlktykpfktry
Flexible Loop (DISEMBL)
mdavkanlggkkviFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSvagvvldlktykpfktry
Low Complexity Region (SEG)
MDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Disordered region (IsUnstruct)
*******LGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKP*****
Disordered Region (DISOPRED)
****K**LGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTR*
Disordered Region (DISEMBL)
MDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Disordered Region (DISPRO)
MDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q9FN04	466	Amino acid permease 4 OS=	yes	no	0.908	0.532	0.714	1e-104
Q38967	493	Amino acid permease 2 OS=	no	no	0.908	0.503	0.690	1e-102
Q39134	476	Amino acid permease 3 OS=	no	no	0.908	0.521	0.689	1e-100
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.860	0.489	0.653	4e-96
P92934	481	Amino acid permease 6 OS=	no	no	0.974	0.553	0.550	4e-86
Q42400	485	Amino acid permease 1 OS=	no	no	0.908	0.511	0.552	5e-86
O80592	475	Amino acid permease 8 OS=	no	no	0.901	0.517	0.548	3e-83
Q9FF99	467	Probable amino acid perme	no	no	0.846	0.494	0.510	4e-58
Q9LRB5	441	Lysine histidine transpor	no	no	0.824	0.510	0.308	3e-19
Q9FKS8	446	Lysine histidine transpor	no	no	0.842	0.515	0.270	2e-18

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/249 (71%), Positives = 214/249 (85%), Gaps = 1/249 (0%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMK AT  SI VTTTFY+
Sbjct: 218 VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAVTTTFYM 277

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGCMGYAAFGD AP NLLTGFGFYNP+WL+D+ANAAIV+HLVGAYQVF QP+FAF+EK 
Sbjct: 278 LCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIFAFIEKQ 337

Query: 146 SAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 204
           +A ++P SDLVT EYEI IP F   Y++N+FR V+R+ FVVLTT+ISML+PFFNDVVGIL
Sbjct: 338 AAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFNDVVGIL 397

Query: 205 GAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLK 264
           GA+GFWPLTVYFP+EMY  Q+K+ R + +W+ LQ+L+  C  ITLVA +GS+AGV+LDLK
Sbjct: 398 GALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVMLDLK 457

Query: 265 TYKPFKTRY 273
            YKPFKT Y
Sbjct: 458 VYKPFKTTY 466

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/249 (69%), Positives = 215/249 (86%), Gaps = 1/249 (0%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMKKAT  SI VTT FY+
Sbjct: 245 VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTTIFYM 304

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCG MGYAAFGD AP NLLTGFGFYNP+WL+DIANAAIVVHLVGAYQVF QP+FAF+EK 
Sbjct: 305 LCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAFIEKS 364

Query: 146 SAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 204
            A+++P +D ++ E+EI IP F   Y++N+FR+V+R+ FVV TT+ISML+PFFNDVVGIL
Sbjct: 365 VAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGIL 424

Query: 205 GAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLK 264
           GA+GFWPLTVYFP+EMY  Q+K+ + +TRW+ LQ+L+V+C  I++VA +GS+AGV+LDLK
Sbjct: 425 GALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVMLDLK 484

Query: 265 TYKPFKTRY 273
            YKPFK+ Y
Sbjct: 485 VYKPFKSTY 493

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/248 (68%), Positives = 218/248 (87%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT TQK+WR+ QALG IAFAYS+SIIL+EIQDT++SPP+E KTMKKATL S+ VTT FY+
Sbjct: 229 VTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYM 288

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGCMGYAAFGDL+P NLLTGFGFYNPYWL+DIANAAIV+HL+GAYQV+CQPLFAF+EK 
Sbjct: 289 LCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQ 348

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           ++ ++P S+ +  + +IPIP +   +LN+FRL+WRT+FV++TT+ISMLLPFFNDVVG+LG
Sbjct: 349 ASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLG 408

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A+GFWPLTVYFP+EMY AQKKI R +TRW+ LQ+ ++ C  +++ AA GS+AGV+LDLK+
Sbjct: 409 ALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKS 468

Query: 266 YKPFKTRY 273
           YKPF++ Y
Sbjct: 469 YKPFRSEY 476

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  351 bits (900), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 162/248 (65%), Positives = 206/248 (83%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT +QK+WR+ Q+LG IAFAYS+S+IL+EIQDT++SPPAE  TM+KAT  S+ VTT FY+
Sbjct: 233 VTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYM 292

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGC+GYAAFGD AP NLL   GF NPYWL+DIAN AIV+HLVGAYQV+CQPLFAFVEK 
Sbjct: 293 LCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKE 352

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           +++++P+S+ VT E +I +     + LNLFRLVWRT FV+ TTLISML+PFFNDVVG+LG
Sbjct: 353 ASRRFPESEFVTKEIKIQLFPGKPFNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLG 412

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A+GFWPLTVYFP+EMY AQK + R  T+W+ LQ+L+V+C F+++ AA GSV G+V DLK 
Sbjct: 413 AIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVSDLKV 472

Query: 266 YKPFKTRY 273
           YKPF++ +
Sbjct: 473 YKPFQSEF 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  317 bits (813), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 147/267 (55%), Positives = 200/267 (74%), Gaps = 1/267 (0%)

Query: 5   KANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRS-PP 63
           KA  GG+ V        + + V+G +K+WR+ QA+G IAFAY++S +L+EIQDT+++ PP
Sbjct: 213 KAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPP 272

Query: 64  AEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAI 123
           +E K MK+A+L  +  TT FY+LCGC+GYAAFG+ AP N LTGFGFY P+WLID AN  I
Sbjct: 273 SENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCI 332

Query: 124 VVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLF 183
            VHL+GAYQVFCQP+F FVE  SAK+WP +  +T EY+I +P  G + +N  RLVWRT +
Sbjct: 333 AVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSY 392

Query: 184 VVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVS 243
           VV+T +++M+ PFFND +G++GA  FWPLTVYFPIEM+ AQKKI + +  W  L+IL+ +
Sbjct: 393 VVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWT 452

Query: 244 CFFITLVAAIGSVAGVVLDLKTYKPFK 270
           CF ++LVAA GSV G++  LK +KPF+
Sbjct: 453 CFIVSLVAAAGSVQGLIQSLKDFKPFQ 479

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  317 bits (813), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 137/248 (55%), Positives = 192/248 (77%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT  QK+WRS QA+G IAFAY+++ +L+EIQDT+RS PAE K MK+A+L  +  TT FY+
Sbjct: 237 VTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGVSTTTFFYI 296

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGC+GYAAFG+ AP + LT FGF+ P+WLID ANA I VHL+GAYQVF QP+F FVEK 
Sbjct: 297 LCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQPIFQFVEKK 356

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
             + +P +  +T+EY + +PF G + ++LFRLVWRT +VV+TT+++M+ PFFN ++G++G
Sbjct: 357 CNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFFNAILGLIG 416

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A  FWPLTVYFP+EM+ AQ KI + + RW+ L+ +   C  ++L+AA GS+AG++  +KT
Sbjct: 417 AASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLISSVKT 476

Query: 266 YKPFKTRY 273
           YKPF+T +
Sbjct: 477 YKPFRTMH 484

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  308 bits (789), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 135/246 (54%), Positives = 185/246 (75%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT ++K+W+  QA+G IAF+Y+F+ IL+EIQDT+RS P E K MK+A+L  +  TT FY+
Sbjct: 228 VTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTTVFYI 287

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGC+GYAAFG+ AP + LT FGFY PYWLID ANA I +HL+GAYQV+ QP F FVE+ 
Sbjct: 288 LCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQFVEEN 347

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
             KKWP+S+ +  EY   +P  G  ++NLFRLVWRT +VVLTT ++M+ PFFN ++G+LG
Sbjct: 348 CNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLG 407

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A  FWPLTVYFP+ M+ AQ K+ + + RWL L +L + C  ++ +AA+GS+ G++  +K+
Sbjct: 408 AFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINSVKS 467

Query: 266 YKPFKT 271
           YKPFK 
Sbjct: 468 YKPFKN 473

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  224 bits (572), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/233 (51%), Positives = 165/233 (70%), Gaps = 2/233 (0%)

Query: 30  QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 89
           +K+W   QALG IAF+Y FSIILLEIQDT+RSPPAE +TMKKA+  ++ + T F+  CGC
Sbjct: 230 EKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGC 289

Query: 90  MGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKK 149
            GYAAFGD  P NLLTGFGFY P+WL+D ANA IV+HLVG YQV+ QP+FA  E+   KK
Sbjct: 290 FGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKK 349

Query: 150 WPKSDLVTAEYEIPIPFW--GVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAM 207
           +P++  +   Y   +P       +LN  R+  RT++V++TT ++++ P+FN+V+G++GA+
Sbjct: 350 YPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGAL 409

Query: 208 GFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVV 260
            FWPL VYFP+EM   QKKI   T  WL L+  +  C  + L++ +GS+ G+V
Sbjct: 410 AFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLV 462

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 21/246 (8%)

Query: 27  TGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPA--EYKTMKKATLFSIIVTTTFY 84
           T   K++  L ALG +AFAY+   ++LEIQ TI S P       M +  + + IV    Y
Sbjct: 215 TDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICY 274

Query: 85  LLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK 144
                +GY  FG+   +N+L       P WLI +AN  +V+H++G+YQ+F  P+F  +E 
Sbjct: 275 FPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVFDMLET 332

Query: 145 WSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 204
              KK              + F   ++L   R + R+L+V  T ++++ +PFF  ++G  
Sbjct: 333 VLVKK--------------MNFNPSFKL---RFITRSLYVAFTMIVAICVPFFGGLLGFF 375

Query: 205 GAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLK 264
           G   F P T Y P  M+   KK  R    W       +    +T++A IG +  ++++ K
Sbjct: 376 GGFAFAPTTYYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTILAPIGGLRTIIINAK 435

Query: 265 TYKPFK 270
           TYK F 
Sbjct: 436 TYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 21/251 (8%)

Query: 19  IQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKT--MKKATLFS 76
           +QY     T    ++     LG +AFAY+   ++LEIQ TI S P +     M +  + +
Sbjct: 212 VQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVA 271

Query: 77  IIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQ 136
            IV    Y     +GY  FG+   +N+L       P WLI  AN  +V+H++G+YQ++  
Sbjct: 272 YIVVALCYFPVALVGYYIFGNGVEDNILMSLK--KPAWLIATANIFVVIHVIGSYQIYAM 329

Query: 137 PLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF 196
           P+F  +E    KK       T                  R   R  +V  T  + M  PF
Sbjct: 330 PVFDMMETLLVKKLNFRPTTT-----------------LRFFVRNFYVAATMFVGMTFPF 372

Query: 197 FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSV 256
           F  ++   G   F P T + P  ++ A  K  + +  W    +  V   F+ +++ IG +
Sbjct: 373 FGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGL 432

Query: 257 AGVVLDLKTYK 267
             +V+  K YK
Sbjct: 433 RTIVIQAKGYK 443

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
224103209	469	amino acid permease [Populus trichocarpa	0.908	0.528	0.858	1e-125
356541032	628	PREDICTED: LOW QUALITY PROTEIN: amino ac	0.908	0.394	0.822	1e-119
13676299	513	amino acid transporter [Glycine max]	0.908	0.483	0.822	1e-119
225428003	512	PREDICTED: amino acid permease 2 [Vitis	0.908	0.484	0.822	1e-119
255587378	484	amino acid transporter, putative [Ricinu	0.978	0.551	0.774	1e-118
356544864	513	PREDICTED: amino acid permease 2-like [G	0.908	0.483	0.814	1e-118
4138679	509	amino acid transporter [Vicia faba]	0.908	0.487	0.798	1e-114
388497910	512	unknown [Medicago truncatula]	0.908	0.484	0.782	1e-113
224083500	463	amino acid permease [Populus trichocarpa	0.908	0.535	0.745	1e-109
359492379	483	PREDICTED: amino acid permease 2 [Vitis	0.908	0.513	0.766	1e-104

>gi|224103209|ref|XP_002312967.1| amino acid permease [Populus trichocarpa] gi|222849375|gb|EEE86922.1| amino acid permease [Populus trichocarpa]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/248 (85%), Positives = 236/248 (95%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT TQKLWRSLQALGAIAFAYSFSIIL+EIQDTIRSPPAEYKTMKKATLFSII+TT FYL
Sbjct: 222 VTSTQKLWRSLQALGAIAFAYSFSIILIEIQDTIRSPPAEYKTMKKATLFSIIITTIFYL 281

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGCMGYAAFGDLAP NLLTGFGFYNPYWL+DIAN AIVVHLVGAYQV+CQPLFAFVEKW
Sbjct: 282 LCGCMGYAAFGDLAPGNLLTGFGFYNPYWLLDIANVAIVVHLVGAYQVYCQPLFAFVEKW 341

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           SA+KWPKSD VTAEYE+PIPF+GVYQLN FRLVWRT+FV+LTTLI+ML+PFFNDVVG+LG
Sbjct: 342 SARKWPKSDFVTAEYEVPIPFYGVYQLNFFRLVWRTIFVMLTTLIAMLMPFFNDVVGLLG 401

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           +MGFWPLTV+FPIEMY +QKKIGR T++W+GLQIL+++C  IT+ AA+GSVAGVVLDLKT
Sbjct: 402 SMGFWPLTVFFPIEMYISQKKIGRWTSQWIGLQILSMTCLMITIAAAVGSVAGVVLDLKT 461

Query: 266 YKPFKTRY 273
           YKPFKT Y
Sbjct: 462 YKPFKTSY 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541032|ref|XP_003538987.1| PREDICTED: LOW QUALITY PROTEIN: amino acid permease 2-like [Glycine max]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/248 (82%), Positives = 229/248 (92%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT TQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+SPPAE+KTM+KAT  SI VTT FYL
Sbjct: 381 VTSTQKIWRSLQALGAMAFAYSFSIILIEIQDTIKSPPAEHKTMRKATTLSIAVTTVFYL 440

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGCMGYAAFGD AP NLLTGFGFYNPYWL+DIAN AIV+HLVGAYQVF QPLFAFVEKW
Sbjct: 441 LCGCMGYAAFGDNAPGNLLTGFGFYNPYWLLDIANLAIVIHLVGAYQVFSQPLFAFVEKW 500

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           SA+KWPKS+ VTAEY+IPIP +GVYQLN FRLVWRT+FV+LTTLI+ML+PFFNDVVGILG
Sbjct: 501 SARKWPKSNFVTAEYDIPIPCFGVYQLNFFRLVWRTIFVLLTTLIAMLMPFFNDVVGILG 560

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A GFWPLTVYFPI+MY +QKKIGR T+RWLGLQ+L+ SC  I+L+AA+GS+AGVVLDLKT
Sbjct: 561 AFGFWPLTVYFPIDMYISQKKIGRWTSRWLGLQLLSASCLIISLLAAVGSMAGVVLDLKT 620

Query: 266 YKPFKTRY 273
           YKPFKT Y
Sbjct: 621 YKPFKTSY 628

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13676299|gb|AAK33098.1| amino acid transporter [Glycine max]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/248 (82%), Positives = 229/248 (92%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT TQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+SPPAE+KTM+KAT  SI VTT FYL
Sbjct: 266 VTSTQKIWRSLQALGAMAFAYSFSIILIEIQDTIKSPPAEHKTMRKATTLSIAVTTVFYL 325

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGCMGYAAFGD AP NLLTGFGFYNPYWL+DIAN AIV+HLVGAYQVF QPLFAFVEKW
Sbjct: 326 LCGCMGYAAFGDNAPGNLLTGFGFYNPYWLLDIANLAIVIHLVGAYQVFSQPLFAFVEKW 385

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           SA+KWPKS+ VTAEY+IPIP +GVYQLN FRLVWRT+FV+LTTLI+ML+PFFNDVVGILG
Sbjct: 386 SARKWPKSNFVTAEYDIPIPCFGVYQLNFFRLVWRTIFVLLTTLIAMLMPFFNDVVGILG 445

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A GFWPLTVYFPI+MY +QKKIGR T+RWLGLQ+L+ SC  I+L+AA+GS+AGVVLDLKT
Sbjct: 446 AFGFWPLTVYFPIDMYISQKKIGRWTSRWLGLQLLSASCLIISLLAAVGSMAGVVLDLKT 505

Query: 266 YKPFKTRY 273
           YKPFKT Y
Sbjct: 506 YKPFKTSY 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428003|ref|XP_002278086.1| PREDICTED: amino acid permease 2 [Vitis vinifera] gi|297744622|emb|CBI37884.3| unnamed protein product [Vitis vinifera]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/248 (82%), Positives = 227/248 (91%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT TQKLWRSLQALGAIAFAYSFS+IL+EIQDTI+SPPAEYKTM+KAT+ SI VTT FY+
Sbjct: 265 VTSTQKLWRSLQALGAIAFAYSFSLILIEIQDTIKSPPAEYKTMRKATVLSIAVTTAFYM 324

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGC GYAAFGDLAP NLLTGFGFY+PYWL+DIAN AI+VHLVGAYQV+CQPLFAFVEKW
Sbjct: 325 LCGCFGYAAFGDLAPGNLLTGFGFYDPYWLLDIANIAIIVHLVGAYQVYCQPLFAFVEKW 384

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           SA KWPKSD VT EY++PIP +GVYQLN FRLVWRT+FVVLTTLI+MLLPFFNDVVGILG
Sbjct: 385 SAHKWPKSDFVTEEYDLPIPCYGVYQLNFFRLVWRTIFVVLTTLIAMLLPFFNDVVGILG 444

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A GFWPLTVYFP+EMY +QKKIGR T+RW+ LQIL+ +C  I+L AA+GSVAGVVLDLKT
Sbjct: 445 AFGFWPLTVYFPVEMYISQKKIGRWTSRWVALQILSFACLLISLAAAVGSVAGVVLDLKT 504

Query: 266 YKPFKTRY 273
           YKPFKT Y
Sbjct: 505 YKPFKTSY 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587378|ref|XP_002534252.1| amino acid transporter, putative [Ricinus communis] gi|223525639|gb|EEF28130.1| amino acid transporter, putative [Ricinus communis]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/271 (77%), Positives = 236/271 (87%), Gaps = 4/271 (1%)

Query: 3   AVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSP 62
           A K +L G   I  G + +  L +T TQKLWRSLQALGAIAFAYSFS IL+EIQ+T++SP
Sbjct: 218 AAKGSLTG---ISIGTVTHAGL-LTSTQKLWRSLQALGAIAFAYSFSAILIEIQETVKSP 273

Query: 63  PAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAA 122
           PAEYKTMKKAT FSI VTT FYLLCGC GYAAFGD AP N+LTGFGFYNPYWL+DIAN A
Sbjct: 274 PAEYKTMKKATAFSIAVTTFFYLLCGCFGYAAFGDNAPGNILTGFGFYNPYWLLDIANVA 333

Query: 123 IVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTL 182
           I+VHLVGAYQVFCQPLFAF+EKWSA+KWP SD VTAEYEI I F GVYQLN FR+VWRT+
Sbjct: 334 IIVHLVGAYQVFCQPLFAFIEKWSARKWPNSDFVTAEYEIRILFSGVYQLNFFRIVWRTI 393

Query: 183 FVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNV 242
           FV++TTLI+ML+PFFNDVVGILGAMGFWPLTVYFPIEMY +QK+IGR T++WL LQIL+V
Sbjct: 394 FVIVTTLIAMLMPFFNDVVGILGAMGFWPLTVYFPIEMYISQKRIGRRTSQWLALQILSV 453

Query: 243 SCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 273
            C FIT+ AA+GSVAGVVLDLKTYKPFKT Y
Sbjct: 454 CCLFITIAAAVGSVAGVVLDLKTYKPFKTSY 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544864|ref|XP_003540867.1| PREDICTED: amino acid permease 2-like [Glycine max]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/248 (81%), Positives = 228/248 (91%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT TQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+ PPAE+KTM+KAT  SI VTT FYL
Sbjct: 266 VTSTQKIWRSLQALGAMAFAYSFSIILIEIQDTIKFPPAEHKTMRKATTLSIAVTTVFYL 325

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGCMGYAAFGD AP NLLTGFGFYNPYWL+DIAN AIV+HLVGAYQVF QPLFAFVEKW
Sbjct: 326 LCGCMGYAAFGDNAPGNLLTGFGFYNPYWLLDIANLAIVIHLVGAYQVFSQPLFAFVEKW 385

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           S +KWPKS+ VTAEY+IPIP +GVYQLN FRLVWRT+FV+LTTLI+ML+PFFNDVVGILG
Sbjct: 386 SVRKWPKSNFVTAEYDIPIPCFGVYQLNFFRLVWRTIFVLLTTLIAMLMPFFNDVVGILG 445

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A GFWPLTVYFPI+MY +QKKIGR T+RW+GLQ+L+VSC  I+L+AA+GS+AGVVLDLKT
Sbjct: 446 AFGFWPLTVYFPIDMYISQKKIGRWTSRWIGLQLLSVSCLIISLLAAVGSMAGVVLDLKT 505

Query: 266 YKPFKTRY 273
           YKPFKT Y
Sbjct: 506 YKPFKTSY 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4138679|emb|CAA70778.1| amino acid transporter [Vicia faba]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/248 (79%), Positives = 223/248 (89%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VTGTQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+SPPAE+KTMKKAT+ SI+VTT FY+
Sbjct: 262 VTGTQKVWRSLQALGAMAFAYSFSIILIEIQDTIKSPPAEHKTMKKATMLSIMVTTVFYI 321

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCG MGYAAFGD  P NLLTGFGFYNPYWL+DIAN AIVVHLVGAYQVF QP FAFVEKW
Sbjct: 322 LCGSMGYAAFGDHVPGNLLTGFGFYNPYWLLDIANFAIVVHLVGAYQVFSQPFFAFVEKW 381

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           SA KWPK+  VT EY+IPIP  GVY+LNLFRL+WRT+FV+LTTLI+MLLPFFNDVVG+LG
Sbjct: 382 SAHKWPKNKFVTEEYDIPIPCIGVYKLNLFRLIWRTIFVLLTTLIAMLLPFFNDVVGLLG 441

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A GFWPLTVYFPI+MY +QKKIGR T RWLGLQ+L+  C  I+ +AA+GS+AGVVLDLKT
Sbjct: 442 AFGFWPLTVYFPIDMYISQKKIGRWTNRWLGLQMLSGCCLIISTLAAVGSIAGVVLDLKT 501

Query: 266 YKPFKTRY 273
           YKPFKT Y
Sbjct: 502 YKPFKTSY 509

Source: Vicia faba

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497910|gb|AFK37021.1| unknown [Medicago truncatula]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/248 (78%), Positives = 224/248 (90%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VTGTQK+WRSLQALGA+AF+YSFSIIL+EIQDT++SPP+E+KTMKKATL SI+VT  FYL
Sbjct: 265 VTGTQKIWRSLQALGAMAFSYSFSIILIEIQDTLKSPPSEHKTMKKATLVSIMVTAVFYL 324

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCG MGYAAFGD  P NLLTGFGFYNPYWL+DIAN AIVVHL+GAYQVF QP FAFVEKW
Sbjct: 325 LCGGMGYAAFGDHVPGNLLTGFGFYNPYWLLDIANLAIVVHLIGAYQVFSQPFFAFVEKW 384

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           SA+KWPK++ VTAE+EIPIP  GVYQLN FRL+WRTLFV+LTT+I+MLLPFFNDVVGILG
Sbjct: 385 SARKWPKNNFVTAEHEIPIPCIGVYQLNFFRLIWRTLFVLLTTIIAMLLPFFNDVVGILG 444

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A GFWPLTVY+PI+MY +QKKIGR T +WL LQ+L+  C  I+++AA+GS+AGVVLDLKT
Sbjct: 445 AFGFWPLTVYYPIDMYISQKKIGRWTKKWLALQVLSGCCLIISILAAVGSIAGVVLDLKT 504

Query: 266 YKPFKTRY 273
           YKPFKT Y
Sbjct: 505 YKPFKTSY 512

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083500|ref|XP_002307053.1| amino acid permease [Populus trichocarpa] gi|222856502|gb|EEE94049.1| amino acid permease [Populus trichocarpa]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/248 (74%), Positives = 221/248 (89%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT T+K+WRS QALGAIAFAYS+S+IL+EIQDTI+SPPAE KTMKKA   SI+VTTTFY+
Sbjct: 216 VTETEKIWRSFQALGAIAFAYSYSVILIEIQDTIKSPPAESKTMKKAAKISIVVTTTFYM 275

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGCMGYAAFGD AP NLLTGFGFYNPYWLIDIAN AIV+HL+GAYQVFCQPLFAF+EKW
Sbjct: 276 LCGCMGYAAFGDQAPGNLLTGFGFYNPYWLIDIANVAIVIHLIGAYQVFCQPLFAFIEKW 335

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           + +KWP++  +T E++IP+P +  Y+LNLFR+VWRT+FV+LTT+ISMLLPFFNDVVGILG
Sbjct: 336 ANQKWPENYFITKEFKIPVPGFRPYKLNLFRMVWRTIFVLLTTVISMLLPFFNDVVGILG 395

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A+GFWPLTVYFP+EMY  QKKI + +TRW+ LQ+L+++C  I+LVA  GS+AGVVLDLK 
Sbjct: 396 ALGFWPLTVYFPVEMYIVQKKIPKWSTRWICLQMLSMACLVISLVAVAGSIAGVVLDLKV 455

Query: 266 YKPFKTRY 273
           YKPFKT Y
Sbjct: 456 YKPFKTSY 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492379|ref|XP_003634405.1| PREDICTED: amino acid permease 2 [Vitis vinifera]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/248 (76%), Positives = 220/248 (88%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
           VT TQK+WRS QALG IAFAYS+SIIL+EIQDTI+SPP+E KTMKKATL S+IVTT FY+
Sbjct: 236 VTQTQKIWRSFQALGNIAFAYSYSIILIEIQDTIKSPPSEKKTMKKATLLSVIVTTLFYM 295

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           LCGCMGYAAFGDLAP NLLTGFGFYNPYWL+DIANAAIV+HLVGAYQV+CQPLFAF+EKW
Sbjct: 296 LCGCMGYAAFGDLAPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVYCQPLFAFIEKW 355

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
           +A+K+P S  +T E +IPIP +  Y LNLFRLVWRT+FV++TT+ISML+PFFNDVVGILG
Sbjct: 356 AAEKFPDSQFITKEIKIPIPGFKPYNLNLFRLVWRTIFVIITTVISMLMPFFNDVVGILG 415

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
           A GFWPLTVYFP+EMY AQKKI + +TRWL LQIL+ +C  I++ AA GSVAGV+LDLK 
Sbjct: 416 AFGFWPLTVYFPVEMYIAQKKIPKWSTRWLCLQILSFACLIISIAAAAGSVAGVILDLKV 475

Query: 266 YKPFKTRY 273
           YKPFKT Y
Sbjct: 476 YKPFKTSY 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.908	0.521	0.689	2.4e-106
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.908	0.532	0.714	5.1e-104
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.952	0.527	0.664	8.4e-102
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.970	0.552	0.627	6.8e-98
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.981	0.557	0.542	3.1e-87
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.985	0.554	0.523	4.4e-86
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.897	0.515	0.551	7.3e-84
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.846	0.494	0.515	4.2e-69
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.443	0.274	0.368	4.5e-29
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.443	0.274	0.368	3.7e-26

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 972 (347.2 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
 Identities = 171/248 (68%), Positives = 218/248 (87%)

Query:    26 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
             VT TQK+WR+ QALG IAFAYS+SIIL+EIQDT++SPP+E KTMKKATL S+ VTT FY+
Sbjct:   229 VTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYM 288

Query:    86 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
             LCGCMGYAAFGDL+P NLLTGFGFYNPYWL+DIANAAIV+HL+GAYQV+CQPLFAF+EK 
Sbjct:   289 LCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQ 348

Query:   146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
             ++ ++P S+ +  + +IPIP +   +LN+FRL+WRT+FV++TT+ISMLLPFFNDVVG+LG
Sbjct:   349 ASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLG 408

Query:   206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
             A+GFWPLTVYFP+EMY AQKKI R +TRW+ LQ+ ++ C  +++ AA GS+AGV+LDLK+
Sbjct:   409 ALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKS 468

Query:   266 YKPFKTRY 273
             YKPF++ Y
Sbjct:   469 YKPFRSEY 476

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
 Identities = 178/249 (71%), Positives = 214/249 (85%)

Query:    26 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
             VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMK AT  SI VTTTFY+
Sbjct:   218 VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAVTTTFYM 277

Query:    86 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
             LCGCMGYAAFGD AP NLLTGFGFYNP+WL+D+ANAAIV+HLVGAYQVF QP+FAF+EK 
Sbjct:   278 LCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIFAFIEKQ 337

Query:   146 SAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 204
             +A ++P SDLVT EYEI IP F   Y++N+FR V+R+ FVVLTT+ISML+PFFNDVVGIL
Sbjct:   338 AAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFNDVVGIL 397

Query:   205 GAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLK 264
             GA+GFWPLTVYFP+EMY  Q+K+ R + +W+ LQ+L+  C  ITLVA +GS+AGV+LDLK
Sbjct:   398 GALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVMLDLK 457

Query:   265 TYKPFKTRY 273
              YKPFKT Y
Sbjct:   458 VYKPFKTTY 466

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 941 (336.3 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
 Identities = 174/262 (66%), Positives = 222/262 (84%)

Query:    14 IFCGLIQYLNL-FVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 72
             +F G +  +++  VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMKKA
Sbjct:   232 VFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKA 291

Query:    73 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 132
             T  SI VTT FY+LCG MGYAAFGD AP NLLTGFGFYNP+WL+DIANAAIVVHLVGAYQ
Sbjct:   292 TKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQ 351

Query:   133 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLIS 191
             VF QP+FAF+EK  A+++P +D ++ E+EI IP F   Y++N+FR+V+R+ FVV TT+IS
Sbjct:   352 VFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVIS 411

Query:   192 MLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVA 251
             ML+PFFNDVVGILGA+GFWPLTVYFP+EMY  Q+K+ + +TRW+ LQ+L+V+C  I++VA
Sbjct:   412 MLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVA 471

Query:   252 AIGSVAGVVLDLKTYKPFKTRY 273
              +GS+AGV+LDLK YKPFK+ Y
Sbjct:   472 GVGSIAGVMLDLKVYKPFKSTY 493

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 6.8e-98, Sum P(2) = 6.8e-98
 Identities = 170/271 (62%), Positives = 218/271 (80%)

Query:     4 VKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPP 63
             +K +L G  V   G +  L+  VT +QK+WR+ Q+LG IAFAYS+S+IL+EIQDT++SPP
Sbjct:   215 IKGSLTGVTV---GTVT-LSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPP 270

Query:    64 AEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAI 123
             AE  TM+KAT  S+ VTT FY+LCGC+GYAAFGD AP NLL   GF NPYWL+DIAN AI
Sbjct:   271 AEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAI 330

Query:   124 VVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGV-YQLNLFRLVWRTL 182
             V+HLVGAYQV+CQPLFAFVEK +++++P+S+ VT E +I + F G  + LNLFRLVWRT 
Sbjct:   331 VIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKEIKIQL-FPGKPFNLNLFRLVWRTF 389

Query:   183 FVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNV 242
             FV+ TTLISML+PFFNDVVG+LGA+GFWPLTVYFP+EMY AQK + R  T+W+ LQ+L+V
Sbjct:   390 FVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSV 449

Query:   243 SCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 273
             +C F+++ AA GSV G+V DLK YKPF++ +
Sbjct:   450 TCLFVSVAAAAGSVIGIVSDLKVYKPFQSEF 480

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
 Identities = 148/273 (54%), Positives = 203/273 (74%)

Query:     1 MDAVKANLGGKKV--IFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDT 58
             +   KA  GG+ V     G+   + + V+G +K+WR+ QA+G IAFAY++S +L+EIQDT
Sbjct:   209 LSIAKAAGGGEHVRTTLTGVT--VGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDT 266

Query:    59 IRS-PPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLID 117
             +++ PP+E K MK+A+L  +  TT FY+LCGC+GYAAFG+ AP N LTGFGFY P+WLID
Sbjct:   267 LKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLID 326

Query:   118 IANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRL 177
              AN  I VHL+GAYQVFCQP+F FVE  SAK+WP +  +T EY+I +P  G + +N  RL
Sbjct:   327 FANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRL 386

Query:   178 VWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGL 237
             VWRT +VV+T +++M+ PFFND +G++GA  FWPLTVYFPIEM+ AQKKI + +  W  L
Sbjct:   387 VWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWL 446

Query:   238 QILNVSCFFITLVAAIGSVAGVVLDLKTYKPFK 270
             +IL+ +CF ++LVAA GSV G++  LK +KPF+
Sbjct:   447 KILSWTCFIVSLVAAAGSVQGLIQSLKDFKPFQ 479

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
 Identities = 143/273 (52%), Positives = 201/273 (73%)

Query:     3 AVKANLGGK--KVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIR 60
             A+    GGK  K    G    + + VT  QK+WRS QA+G IAFAY+++ +L+EIQDT+R
Sbjct:   214 AIATVAGGKVGKTSMTGTA--VGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLR 271

Query:    61 SPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIAN 120
             S PAE K MK+A+L  +  TT FY+LCGC+GYAAFG+ AP + LT FGF+ P+WLID AN
Sbjct:   272 SSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFAN 331

Query:   121 AAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWR 180
             A I VHL+GAYQVF QP+F FVEK   + +P +  +T+EY + +PF G + ++LFRLVWR
Sbjct:   332 ACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWR 391

Query:   181 TLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQIL 240
             T +VV+TT+++M+ PFFN ++G++GA  FWPLTVYFP+EM+ AQ KI + + RW+ L+ +
Sbjct:   392 TAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTM 451

Query:   241 NVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 273
                C  ++L+AA GS+AG++  +KTYKPF+T +
Sbjct:   452 CYVCLIVSLLAAAGSIAGLISSVKTYKPFRTMH 484

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 7.3e-84, Sum P(2) = 7.3e-84
 Identities = 135/245 (55%), Positives = 185/245 (75%)

Query:    26 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
             VT ++K+W+  QA+G IAF+Y+F+ IL+EIQDT+RS P E K MK+A+L  +  TT FY+
Sbjct:   228 VTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTTVFYI 287

Query:    86 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
             LCGC+GYAAFG+ AP + LT FGFY PYWLID ANA I +HL+GAYQV+ QP F FVE+ 
Sbjct:   288 LCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQFVEEN 347

Query:   146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
               KKWP+S+ +  EY   +P  G  ++NLFRLVWRT +VVLTT ++M+ PFFN ++G+LG
Sbjct:   348 CNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLG 407

Query:   206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 265
             A  FWPLTVYFP+ M+ AQ K+ + + RWL L +L + C  ++ +AA+GS+ G++  +K+
Sbjct:   408 AFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINSVKS 467

Query:   266 YKPFK 270
             YKPFK
Sbjct:   468 YKPFK 472

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 120/233 (51%), Positives = 166/233 (71%)

Query:    30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 89
             +K+W   QALG IAF+Y FSIILLEIQDT+RSPPAE +TMKKA+  ++ + T F+  CGC
Sbjct:   230 EKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGC 289

Query:    90 MGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKK 149
              GYAAFGD  P NLLTGFGFY P+WL+D ANA IV+HLVG YQV+ QP+FA  E+   KK
Sbjct:   290 FGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKK 349

Query:   150 WPKSDLVTAEYEIPIPFW-G-VYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAM 207
             +P++  +   Y   +P   G   +LN  R+  RT++V++TT ++++ P+FN+V+G++GA+
Sbjct:   350 YPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGAL 409

Query:   208 GFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVV 260
              FWPL VYFP+EM   QKKI   T  WL L+  +  C  + L++ +GS+ G+V
Sbjct:   410 AFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLV 462

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 208 (78.3 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
 Identities = 46/125 (36%), Positives = 70/125 (56%)

Query:    27 TGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAE--YKTMKKATLFSIIVTTTFY 84
             T T K++    ALG +AFAY+   ++LEIQ TI S P +   K M K  + + I+    Y
Sbjct:   215 TSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYIIVALCY 274

Query:    85 LLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK 144
                  +GY AFG+   +N+L       P WLI +AN  +V+H++G+YQ++  P+F  +E 
Sbjct:   275 FPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVFDMIET 332

Query:   145 WSAKK 149
                KK
Sbjct:   333 VLVKK 337

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
 Identities = 46/125 (36%), Positives = 68/125 (54%)

Query:    27 TGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPA-EYKT-MKKATLFSIIVTTTFY 84
             T   K++  L ALG +AFAY+   ++LEIQ TI S P    K  M +  + + IV    Y
Sbjct:   215 TDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICY 274

Query:    85 LLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK 144
                  +GY  FG+   +N+L       P WLI +AN  +V+H++G+YQ+F  P+F  +E 
Sbjct:   275 FPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVFDMLET 332

Query:   145 WSAKK 149
                KK
Sbjct:   333 VLVKK 337

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FN04	AAP4_ARATH	No assigned EC number	0.7148	0.9084	0.5321	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	4e-54

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  179 bits (457), Expect = 4e-54
 Identities = 78/237 (32%), Positives = 115/237 (48%), Gaps = 17/237 (7%)

Query: 26  VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 85
                KL R   A+G I FA+    +LL IQ+T++SP    K M K  L +II+ T  Y+
Sbjct: 186 AKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKF-KAMTKVLLTAIIIVTVLYI 244

Query: 86  LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 145
           L G +GY AFG+    N+L         WLIDIAN  +V+HL+ +Y +   P+   VE  
Sbjct: 245 LVGLVGYLAFGNNVKGNILLNLP--KSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENL 302

Query: 146 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 205
             +K        A  +            L R+V R+  VV+T LI++ +PF  D + ++G
Sbjct: 303 LFRKG-------ASGKHNPKSK------LLRVVIRSGLVVITYLIAISVPFLGDFLSLVG 349

Query: 206 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQ-ILNVSCFFITLVAAIGSVAGVVL 261
           A    PLT   P   +   KK  + +   L    IL+V C  I L+     VAG+++
Sbjct: 350 ATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.96
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.96
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.93
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.5
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.02
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.74
PRK15132	403	tyrosine transporter TyrP; Provisional	98.57
PRK10483	414	tryptophan permease; Provisional	98.35
PRK09664	415	tryptophan permease TnaB; Provisional	98.14
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.95
PRK11021	410	putative transporter; Provisional	97.94
PRK10644	445	arginine:agmatin antiporter; Provisional	97.88
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.88
PRK10655	438	potE putrescine transporter; Provisional	97.86
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.86
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.86
PRK15049	499	L-asparagine permease; Provisional	97.82
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.81
PRK10249	458	phenylalanine transporter; Provisional	97.8
PRK10746	461	putative transport protein YifK; Provisional	97.77
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.72
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.65
PRK10238	456	aromatic amino acid transporter; Provisional	97.63
PRK11387	471	S-methylmethionine transporter; Provisional	97.59
PRK10580	457	proY putative proline-specific permease; Provision	97.54
TIGR00913	478	2A0310 amino acid permease (yeast).	97.51
PRK10836	489	lysine transporter; Provisional	97.45
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.45
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.41
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.39
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.36
TIGR00909	429	2A0306 amino acid transporter.	97.34
TIGR00930	953	2a30 K-Cl cotransporter.	97.32
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.32
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.31
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.22
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.11
PRK15238	496	inner membrane transporter YjeM; Provisional	97.11
TIGR00911	501	2A0308 L-type amino acid transporter.	96.69
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.66
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.34
KOG1287	479	consensus Amino acid transporters [Amino acid tran	96.31
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	95.96
KOG1286	554	consensus Amino acid transporters [Amino acid tran	94.76
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	93.72
TIGR00912	359	2A0309 spore germination protein (amino acid perme	92.62
COG0833	541	LysP Amino acid transporters [Amino acid transport	90.71

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-36  Score=281.80  Aligned_cols=206  Identities=17%  Similarity=0.240  Sum_probs=186.3

Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchh---hhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccc
Q 024069           30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMK---KATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTG  106 (273)
Q Consensus        30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~---~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~  106 (273)
                      .+.-+....+|+.+|||+|.+++.++|++||+|    ++|.   ++++.+|.+++++|..+|.+||++|||++++.|++|
T Consensus       238 ~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLN  313 (449)
T KOG1304|consen  238 TGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLN  313 (449)
T ss_pred             cchhhhHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEec
Confidence            344567788999999999999999999999998    7899   999999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHH
Q 024069          107 FGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVL  186 (273)
Q Consensus       107 l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~  186 (273)
                      +|   .+|+.+.+++++.+.+.++||++.+|+.+.+|+.+.+++..+    +            + ++....+|..++++
T Consensus       314 LP---~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~----~------------~-~~~~~~~R~~lVll  373 (449)
T KOG1304|consen  314 LP---QEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN----R------------K-KLLEYALRVFLVLL  373 (449)
T ss_pred             CC---ccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc----h------------h-HHHHHHHHHHHHHH
Confidence            97   389999999999999999999999999999999987754321    0            1 47788899999999


Q ss_pred             HHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024069          187 TTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR---GTTRWLGLQILNVSCFFITLVAAIGSVAGV  259 (273)
Q Consensus       187 ~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~---~~~~~~~~~~l~~~g~~~~v~gt~~si~~i  259 (273)
                      +..+|.++|+++++++|+||+|++.+++++|++++++.++++.   +.++++.|.+++++|++.++.|||.|+.++
T Consensus       374 t~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  374 TFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9999999999999999999999999999999999999876554   345677899999999999999999999764

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=2.5e-36  Score=287.77  Aligned_cols=222  Identities=18%  Similarity=0.217  Sum_probs=187.6

Q ss_pred             cCchhHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCC--ccc
Q 024069           26 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP--NNL  103 (273)
Q Consensus        26 ~~~~~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~--~~i  103 (273)
                      +..+.++...+.++++++|||+||+++||||+|||+|    ++|+++...++.+++++|..+|+.|||+|||+++  ++.
T Consensus       226 ~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~  301 (473)
T PLN03074        226 HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNA  301 (473)
T ss_pred             CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhH
Confidence            3345677888999999999999999999999999998    6899999999999999999999999999999986  466


Q ss_pred             ccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHH
Q 024069          104 LTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLF  183 (273)
Q Consensus       104 l~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~  183 (273)
                      ++|+|  ++. ...++++++.++++.+|+++..|+.+.+|+.+..+  +.     ++            .+.|.++|+.+
T Consensus       302 l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~-----k~------------~~~r~~~R~~l  359 (473)
T PLN03074        302 FSLLP--RSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DT-----KS------------ICLRALARLPV  359 (473)
T ss_pred             HhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--cc-----cc------------HHHHHHHHHHH
Confidence            77786  233 45788999999999999999999999999876431  10     11            26789999999


Q ss_pred             HHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC-------------Cchh--hHHHHHHHHHHHHHH-
Q 024069          184 VVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG-------------RGTT--RWLGLQILNVSCFFI-  247 (273)
Q Consensus       184 v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~-------------~~~~--~~~~~~~l~~~g~~~-  247 (273)
                      +++++++|+.+|+|++++||+||+++++++|++|+++|+++++++             ...+  +.+.|+++++++.++ 
T Consensus       360 v~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g  439 (473)
T PLN03074        360 VVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVG  439 (473)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHh
Confidence            999999999999999999999999999999999999999865432             1111  236798888865555 


Q ss_pred             HHHHHHHHHHHHHHhhcccccCccCC
Q 024069          248 TLVAAIGSVAGVVLDLKTYKPFKTRY  273 (273)
Q Consensus       248 ~v~gt~~si~~ii~~~~~~~~f~~~~  273 (273)
                      .+.|+|+|+++|++++++|++|++.|
T Consensus       440 ~~~G~~asi~~ii~~~~~~~~f~~~~  465 (473)
T PLN03074        440 FGFGGWASMTNFVRQIDTFGLFAKCY  465 (473)
T ss_pred             hccchHHHHHHHHHhhhhhhhhhhhc
Confidence            57999999999999999999998864

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-36  Score=282.80  Aligned_cols=206  Identities=42%  Similarity=0.750  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCCCCChHH
Q 024069           36 LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWL  115 (273)
Q Consensus        36 f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~~~~~~~  115 (273)
                      |+++|+++|||+||+++||||++||+|    ++|+|++..|+.+++.+|+.++++|||+|||+++|+++.|++  +|.|.
T Consensus       231 f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~  304 (437)
T KOG1303|consen  231 FTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWL  304 (437)
T ss_pred             hhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhH
Confidence            899999999999999999999999998    469999999999999999999999999999999999999995  58899


Q ss_pred             HHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHHHHHHHhhcc
Q 024069          116 IDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP  195 (273)
Q Consensus       116 ~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi~iP  195 (273)
                      ...+++++.+|++.+|+++++|.++.+|+.+..++++  .     ..        +..+.|.+.|+.+++.++++|+.+|
T Consensus       305 ~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~-----~~--------~~~~~R~~~Rt~~v~~~~~vA~~~P  369 (437)
T KOG1303|consen  305 IALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--F-----KK--------RSLVLRLLVRTFFVAVTTFVALSFP  369 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--c-----cc--------cccceeeehhhHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999998765332  1     00        1137899999999999999999999


Q ss_pred             chHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 024069          196 FFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQIL-NVSCFFITLVAAIGSVAGVVLD  262 (273)
Q Consensus       196 ~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l-~~~g~~~~v~gt~~si~~ii~~  262 (273)
                      +|+++++++||+...++++++|+++|++++++++.+.+|+.++.+ .++|+++++....+++++++.+
T Consensus       370 fFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  370 FFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999998888 7999999999999999988753

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=2e-33  Score=268.07  Aligned_cols=206  Identities=17%  Similarity=0.233  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCCCCCh
Q 024069           34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPY  113 (273)
Q Consensus        34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~~~~~  113 (273)
                      +.+.++|+++|||.||.+.+|+++|||+|  +.+||.+++..++.++.++|..+|++||++||+++++++++|++|. ++
T Consensus       257 ~~~~algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~-~~  333 (467)
T PTZ00206        257 RAIEGLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV-NE  333 (467)
T ss_pred             HHHhhhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC-CC
Confidence            57899999999999999999999999995  5589999999999999999999999999999999999999999432 23


Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHHHHHHHhh
Q 024069          114 WLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISML  193 (273)
Q Consensus       114 ~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi~  193 (273)
                      ....++++++.++++.+||++.+|+++.+++.+..+  +.     +    .+       .+++...+..++++++++|++
T Consensus       334 ~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~--~~-----~----~~-------~~~~~~~~~~l~~~~l~iAi~  395 (467)
T PTZ00206        334 PAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD--AR-----K----VA-------FWKHCIAVVTLSVVMLLCGLF  395 (467)
T ss_pred             chhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC--cc-----c----Cc-------hhhHHHHHHHHHHHHHHHHhc
Confidence            445677888888999999999999999998876321  10     1    01       255666677778888999999


Q ss_pred             ccchHHHHHHhhhhhhhhHHHHHHHHHHHHHh---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024069          194 LPFFNDVVGILGAMGFWPLTVYFPIEMYKAQK---KIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVV  260 (273)
Q Consensus       194 iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~---~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~ii  260 (273)
                      +|+++.++||+||++++.++|++|+++|++..   +++....+|+.+++++++|++.++.|||+|+.+.+
T Consensus       396 vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        396 IPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             cCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            99999999999999999999999999999842   22223334567899999999999999999998876

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.96  E-value=2e-31  Score=249.05  Aligned_cols=215  Identities=27%  Similarity=0.381  Sum_probs=178.8

Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCC
Q 024069           30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGF  109 (273)
Q Consensus        30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~  109 (273)
                      .+.++.+.++|+++|||.||.++||+++|||+| ...+++.++...++.+++++|+.+|.+||++||+++++++++|++ 
T Consensus       189 ~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~-~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~-  266 (409)
T PF01490_consen  189 ISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP-SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP-  266 (409)
T ss_pred             chhhHHHHhhhhhhhhhhcccccceeeeeccCC-ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC-
Confidence            566789999999999999999999999999997 222456699999999999999999999999999999999999997 


Q ss_pred             CCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHHHHH
Q 024069          110 YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTL  189 (273)
Q Consensus       110 ~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~  189 (273)
                       ++++...++++++.++.+.+||++.+|.++.+|+.+.++.+..+. +.+..        ...+++|..+|+.+++++++
T Consensus       267 -~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~  336 (409)
T PF01490_consen  267 -NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRD-SPKNT--------PSSRWLRYLIRIILVLLSFL  336 (409)
T ss_pred             -CcccccccccccchhhhhhccccccchhHhhhhhheecccccccc-ccccc--------cccceeeeeeecchhhhhhh
Confidence             344677899999999999999999999999999988653000000 00000        11147889999999999999


Q ss_pred             HHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 024069          190 ISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWL-----GLQILNVSCFFITLVAAIGSV  256 (273)
Q Consensus       190 iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~-----~~~~l~~~g~~~~v~gt~~si  256 (273)
                      +|+.+|+++++++++||++++.++|++|+++|++.++++++..+++     .++..+++|++.++.|+|.++
T Consensus       337 iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  337 IAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             hhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            9999999999999999999999999999999999987665433332     356667889999999998876

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.96  E-value=7.6e-31  Score=233.01  Aligned_cols=217  Identities=18%  Similarity=0.266  Sum_probs=185.3

Q ss_pred             HHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCCCCChHHH
Q 024069           37 QALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLI  116 (273)
Q Consensus        37 ~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~~~~~~~~  116 (273)
                      .++|.++|+|+.|..+|+++.+|++|    .+|.-.+.++-+...++-..+|.+||++|||++|+.|++|+|   +..++
T Consensus       306 isvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk  378 (524)
T KOG4303|consen  306 ISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFK  378 (524)
T ss_pred             eEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchh
Confidence            56788999999999999999999997    477777888889999999999999999999999999999996   44577


Q ss_pred             HHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHHHHHHHhhccc
Q 024069          117 DIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF  196 (273)
Q Consensus       117 ~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi~iP~  196 (273)
                      .++|+++++..+.|||+-.+.+.+.+|+-+.+-.|+..+ ..-|+      ++..++.+.+-+|..+++++.++|+.+|+
T Consensus       379 ~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~F-pscys------~Dg~Lk~WgltlR~~lvvfTllmAi~vPh  451 (524)
T KOG4303|consen  379 ILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPF-PSCYS------PDGSLKEWGLTLRIILVVFTLLMAISVPH  451 (524)
T ss_pred             hhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCC-ceeeC------CCcchhhheeeeeeHHHHHHHHHHHHhHH
Confidence            899999999999999998888888888876654454332 11121      23333455566899999999999999999


Q ss_pred             hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 024069          197 FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYK  267 (273)
Q Consensus       197 f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~ii~~~~~~~  267 (273)
                      |..++|++|+++++.++|+.|++||++++++.....+..++..+++.|..++|.|.|.|.+++|+++++.-
T Consensus       452 f~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~  522 (524)
T KOG4303|consen  452 FVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSAD  522 (524)
T ss_pred             HHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence            99999999999999999999999999998776655566688999999999999999999999999998743

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.93  E-value=3.7e-25  Score=206.75  Aligned_cols=213  Identities=19%  Similarity=0.313  Sum_probs=176.2

Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCC
Q 024069           30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGF  109 (273)
Q Consensus        30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~  109 (273)
                      ..+++.+.++++++|||.||.+..++++|||+  |+++++.++...+...+..+|..+|.+||+.|||++++|++.++|.
T Consensus       191 ~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~--~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~  268 (411)
T KOG1305|consen  191 SSFSSLFYALPIFVFAFTCHSNVFPIYNELKD--RSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDS  268 (411)
T ss_pred             chhhhhhhhhhhhheeeeccccceeeeeeeeC--chHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCc
Confidence            33378999999999999999999999999999  5779999999999999999999999999999999999999999873


Q ss_pred             CCCh----HHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHH
Q 024069          110 YNPY----WLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVV  185 (273)
Q Consensus       110 ~~~~----~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~  185 (273)
                      ..+.    +....++..+.++.+..+|+..+|.+..+++.+.+..|+.+    +     ++      +.++++++..++.
T Consensus       269 ~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~----~-----~s------~~r~~~itl~ll~  333 (411)
T KOG1305|consen  269 ILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLT----S-----FS------GKRHFVITLLLLI  333 (411)
T ss_pred             ccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCC----C-----cc------ceehhHHHHHHHH
Confidence            2221    23467888999999999999999999999988876544411    0     00      2456677888999


Q ss_pred             HHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024069          186 LTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVL  261 (273)
Q Consensus       186 ~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~ii~  261 (273)
                      ++.+.|+.+|+++++++++||++++.++|++|+++|++.++.+  ++.....+...++++..+++|+..-+.++..
T Consensus       334 ~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~  407 (411)
T KOG1305|consen  334 FTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKKK--SREPLGALIFLILGVLLSIIGVAVMIYDLLA  407 (411)
T ss_pred             HHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeeccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999987762  2233345566678888888877766666543

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.50  E-value=1.4e-12  Score=123.12  Aligned_cols=206  Identities=16%  Similarity=0.161  Sum_probs=138.2

Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCC
Q 024069           30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGF  109 (273)
Q Consensus        30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~  109 (273)
                      ....+...++++++|||++|+++|++++|||++  ++++.+|+...+..+..++|..++..+|..+|+.+.++++++.+ 
T Consensus       190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~-  266 (415)
T COG0814         190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE-  266 (415)
T ss_pred             hhHHHHHHHhhHHHhhhhCCccchHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC-
Confidence            444567899999999999999999999999994  43349999999999999999999999999999999999999986 


Q ss_pred             CCChHHHHHHHHHHHHHHHhhhhccchhh--------------HHHHHHHHhccCCCCcccCCcccccCCCccccccchh
Q 024069          110 YNPYWLIDIANAAIVVHLVGAYQVFCQPL--------------FAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLF  175 (273)
Q Consensus       110 ~~~~~~~~i~~~~~~i~~~~s~pl~~~p~--------------~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  175 (273)
                       +++.. .............+++.+.++.              +|..+..+++  .+++    + .+       .. .+.
T Consensus       267 -~~~~~-l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~~----~-~r-------~~-~~~  329 (415)
T COG0814         267 -QNISL-LSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNSK----P-GR-------KK-TGL  329 (415)
T ss_pred             -chHHH-HHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccCc----c-cc-------hh-hhh
Confidence             22211 1111111112223333333333              3444444432  0100    0 00       00 122


Q ss_pred             h--hHHHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 024069          176 R--LVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAI  253 (273)
Q Consensus       176 r--~~~r~~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l~~~g~~~~v~gt~  253 (273)
                      +  ...........+..+...|..+.+++.+|+.....+.++.|...+.+....+.+..++..+.+++++|+..++.-.+
T Consensus       330 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~  409 (415)
T COG0814         330 LTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL  409 (415)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence            2  22345566677788889999999999999999999999999988876643332221113566777788777766554


Q ss_pred             HH
Q 024069          254 GS  255 (273)
Q Consensus       254 ~s  255 (273)
                      ++
T Consensus       410 ~~  411 (415)
T COG0814         410 AT  411 (415)
T ss_pred             HH
Confidence            43

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.02  E-value=6.9e-09  Score=96.63  Aligned_cols=171  Identities=12%  Similarity=0.064  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccc-------
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLL-------  104 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il-------  104 (273)
                      ..+.+.+++...++|+.|++++++.++|++|   +|+.+|++..+..+++++|+.+........+.+.-++..       
T Consensus       177 ~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~  253 (381)
T TIGR00837       177 WPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLD  253 (381)
T ss_pred             HHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChH
Confidence            3467788999999999998999999999874   379999999999999999998865555444433211111       


Q ss_pred             ---cccC-CCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHH
Q 024069          105 ---TGFG-FYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWR  180 (273)
Q Consensus       105 ---~~l~-~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r  180 (273)
                         +.+. ..+..|...+..++..+.+..|+.-.....+|.++..+++.  + +   +               ..|....
T Consensus       254 ~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~--~-~---~---------------~~~~~~~  312 (381)
T TIGR00837       254 GLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD--D-S---K---------------KGRFKTG  312 (381)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--c-c---c---------------CCCchhh
Confidence               1110 01233555677777778888888877777788877766542  1 0   0               1234445


Q ss_pred             HHHHHHHHHHHhhccchH-HHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 024069          181 TLFVVLTTLISMLLPFFN-DVVGILGAMGFWPLTVYFPIEMYKAQKKI  227 (273)
Q Consensus       181 ~~~v~~~~~iAi~iP~f~-~ll~lvGa~~~~~l~fi~P~l~~l~l~~~  227 (273)
                      .+..+...++|...|+-. ..++..| +..+.+.+++|++++++.|++
T Consensus       313 ~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       313 LLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             hhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            566678888899999866 9999999 888999999999999988764

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.74  E-value=1.1e-06  Score=82.70  Aligned_cols=173  Identities=19%  Similarity=0.261  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhh--hhhh---------hcccCCC
Q 024069           30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMG---------YAAFGDL   98 (273)
Q Consensus        30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~v--g~~G---------Y~~fG~~   98 (273)
                      .+.-..+.++++.++||+.|+++|++.+.+++.   .++.+|++..+..+..++|+..  .++|         -...|++
T Consensus       181 ~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~  257 (394)
T PF03222_consen  181 SDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGN  257 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Confidence            455567799999999999999999999999973   3789999999988888888765  2333         1112222


Q ss_pred             CCc--ccccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhh
Q 024069           99 APN--NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFR  176 (273)
Q Consensus        99 v~~--~il~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r  176 (273)
                      +.+  ..+.+..  ++.+...+..++..+.+.+||-=...-.+|.++..++.  +++                   ...|
T Consensus       258 ~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r  314 (394)
T PF03222_consen  258 VSALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGR  314 (394)
T ss_pred             hHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccch
Confidence            211  1222221  33455667778777888888866666678888777653  121                   0223


Q ss_pred             hHHHHHHHHHHHHHHhhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 024069          177 LVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR  229 (273)
Q Consensus       177 ~~~r~~~v~~~~~iAi~iP~-f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~  229 (273)
                      ...-....+-.+++|...|+ |-..+++.| ...+.+..++|+++..|.|++++
T Consensus       315 ~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~  367 (394)
T PF03222_consen  315 LKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP  367 (394)
T ss_pred             HHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence            33334455667888999996 889999999 99999999999999999876543

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.57  E-value=2.3e-06  Score=80.49  Aligned_cols=190  Identities=12%  Similarity=0.121  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCC-----C-----cccc
Q 024069           35 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----P-----NNLL  104 (273)
Q Consensus        35 ~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v-----~-----~~il  104 (273)
                      .+.+++++++||+-|+++|++.+.+++.   .++.+|++..+..+..++|+..=......-+.+.     +     ++++
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            6789999999999999999999999862   3789999999999999988866444333333221     1     1222


Q ss_pred             cccCC-CCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHH
Q 024069          105 TGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLF  183 (273)
Q Consensus       105 ~~l~~-~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~  183 (273)
                      ..+.. .+..+...+..++..+.+..||-=...-.+|.++..++++  +      +             ...|...-.+.
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~------~-------------~~~r~~~~~l~  318 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--N------T-------------VGGRLQTGLIT  318 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--c------c-------------ccCCchhehhh
Confidence            22210 1234666677777777888888666666778887766532  1      0             02244445566


Q ss_pred             HHHHHHHHhhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC-Cchh----hHHHHHHHHHHHHHHHH
Q 024069          184 VVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG-RGTT----RWLGLQILNVSCFFITL  249 (273)
Q Consensus       184 v~~~~~iAi~iP~-f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~-~~~~----~~~~~~~l~~~g~~~~v  249 (273)
                      .+-.+++|...|+ |...++..|.. .+.+.+++|+++-.|.|+.+ ....    .+..+++.+++|++..+
T Consensus       319 flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~  389 (403)
T PRK15132        319 FLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG  389 (403)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence            7888899999997 88899999875 68999999999998887543 2111    23345555555555433

>PRK10483 tryptophan permease; Provisional

Probab=98.35  E-value=2.4e-05  Score=73.71  Aligned_cols=168  Identities=15%  Similarity=0.141  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhh--hhhhhc---------ccCCCCCcc
Q 024069           34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMGYA---------AFGDLAPNN  102 (273)
Q Consensus        34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~v--g~~GY~---------~fG~~v~~~  102 (273)
                      ..+.+++++++||+.|+++|++.+.+++. +  ++.+|++..+..+..++|+..  .++|=.         .-|+++ +.
T Consensus       193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d-~--~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~  268 (414)
T PRK10483        193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD-P--KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DV  268 (414)
T ss_pred             HHHHHHHHHHhhccCCCcchHHHHHhCcC-H--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HH
Confidence            46799999999999999999999999873 2  689999999999999999874  222211         123332 11


Q ss_pred             cccccCC-CCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHH
Q 024069          103 LLTGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRT  181 (273)
Q Consensus       103 il~~l~~-~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~  181 (273)
                      .+..+.. .++.+...+..++..+.+..||-=...-.+|.++..++.+  ++.                   ..|...-.
T Consensus       269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~~-------------------~~r~~~~~  327 (414)
T PRK10483        269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DSA-------------------MGRFKTAL  327 (414)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeeh
Confidence            1122210 1233555566777777788888666667788888776542  210                   12322333


Q ss_pred             HHHHHHHHHHhhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 024069          182 LFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKI  227 (273)
Q Consensus       182 ~~v~~~~~iAi~iP~-f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~  227 (273)
                      +..+-..++|...|+ |-..++..|.. .+.+.-++|+++-.+.|++
T Consensus       328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            456778889999998 88899999987 5677789999999988764

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.14  E-value=0.00013  Score=68.85  Aligned_cols=169  Identities=14%  Similarity=0.088  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhh--hhhh---------hcccCCCCCcc
Q 024069           34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMG---------YAAFGDLAPNN  102 (273)
Q Consensus        34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~v--g~~G---------Y~~fG~~v~~~  102 (273)
                      ..+.+++++++||+.|+++|++.+.+++.   .++-+|++.....+..++|+..  .+.|         -...|+++.+-
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l  270 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL  270 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence            46679999999999999999999999863   2678888888888888888644  2222         12233333321


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHH
Q 024069          103 LLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTL  182 (273)
Q Consensus       103 il~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~  182 (273)
                      +..-....+..+...+..++..+.+..||-=...-.+|.+...++.+  +++                   ..|...-.+
T Consensus       271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~~-------------------~~r~~~~~l  329 (415)
T PRK09664        271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--NSH-------------------GGRFKTVLL  329 (415)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehh
Confidence            11100001234666677777777888888666667788887776542  210                   123333334


Q ss_pred             HHHHHHHHHhhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 024069          183 FVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKI  227 (273)
Q Consensus       183 ~v~~~~~iAi~iP~-f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~  227 (273)
                      ..+-..+.|...|+ |=..++..|.. .+.+.-++|+++-.|.|++
T Consensus       330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            56778888999998 88899999997 5688889999999998864

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.95  E-value=0.00068  Score=65.11  Aligned_cols=54  Identities=15%  Similarity=0.071  Sum_probs=44.1

Q ss_pred             HHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 024069           40 GAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG   96 (273)
Q Consensus        40 g~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG   96 (273)
                      ..+.|+|.|-.......+|+|||+   |+.+|++..+..++.++|....+.-...-+
T Consensus       201 ~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~  254 (474)
T TIGR03813       201 ASIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAFIIP  254 (474)
T ss_pred             HHHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            346789999999999999999983   799999999999999999876544333333

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK11021 putative transporter; Provisional

Probab=97.94  E-value=0.0017  Score=61.15  Aligned_cols=65  Identities=15%  Similarity=0.406  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh--hhcccCC
Q 024069           30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM--GYAAFGD   97 (273)
Q Consensus        30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~--GY~~fG~   97 (273)
                      .++.+.+.++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|......  ++..++|
T Consensus       174 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~  240 (410)
T PRK11021        174 IEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVVVLHFPAYGD  240 (410)
T ss_pred             ccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            3455677889999999999999999999999983   799999999999999999987654  3333444

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.88  E-value=0.0011  Score=63.09  Aligned_cols=56  Identities=11%  Similarity=0.179  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM   90 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~   90 (273)
                      +.....++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|.++.+.
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~  245 (445)
T PRK10644        190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA  245 (445)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence            33455678889999999999999999999983   799999999999999999988665

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.88  E-value=0.0017  Score=61.77  Aligned_cols=60  Identities=10%  Similarity=0.070  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069           30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY   92 (273)
Q Consensus        30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY   92 (273)
                      .+..+.+.++....|+|.|-.......+|+|||+   |+.+|++..+..++.++|........
T Consensus       184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        184 TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788899999999999999999999999983   79999999999999999998866543

>PRK10655 potE putrescine transporter; Provisional

Probab=97.86  E-value=0.0016  Score=61.82  Aligned_cols=57  Identities=11%  Similarity=0.065  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069           33 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY   92 (273)
Q Consensus        33 ~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY   92 (273)
                      .+...++....|+|.|-.....+-+|+|||+   |+.+|++..+..++.++|.+......
T Consensus       189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999999999999983   79999999999999999988754433

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.86  E-value=0.0012  Score=63.07  Aligned_cols=57  Identities=21%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM   90 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~   90 (273)
                      .+.+.+.++....|+|.|-.......+|+|||+   |+.+|++..+...+.++|....+.
T Consensus       179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677999999999999999999999999983   789999999999889999876444

>TIGR00814 stp serine transporter

Probab=97.86  E-value=9.7e-05  Score=69.57  Aligned_cols=179  Identities=9%  Similarity=0.088  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhh----hcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCC-----cc
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDT----IRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP-----NN  102 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~----M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~-----~~  102 (273)
                      ..+...+++..++||.+|+.+|+...+    .+||+...+|-+|++..+..+..++|+..-..+-...+.+.-     ++
T Consensus       185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n  264 (397)
T TIGR00814       185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN  264 (397)
T ss_pred             HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence            446779999999999999999999733    332212246778888888888888887765554444444321     11


Q ss_pred             --cccccC-CCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccC-CCCcccCCcccccCCCccccccchhhhH
Q 024069          103 --LLTGFG-FYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKW-PKSDLVTAEYEIPIPFWGVYQLNLFRLV  178 (273)
Q Consensus       103 --il~~l~-~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~r~~  178 (273)
                        ++..+. ..+..+...+..+...+.+..||-=...-++|.++..+.+.. ++.+    +  .  +      .+..+..
T Consensus       265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~----~--~--~------~~~~~~~  330 (397)
T TIGR00814       265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK----K--I--N------IRKLNRA  330 (397)
T ss_pred             cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc----c--c--C------HHHHHHH
Confidence              111110 012224444555555666777776666777888888773211 1111    0  0  0      0233445


Q ss_pred             HHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 024069          179 WRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQ  224 (273)
Q Consensus       179 ~r~~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l  224 (273)
                      .-.+..+.++.+|..=|+.=+++.-+|+--.+.+.|++|...-.|.
T Consensus       331 ~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v  376 (397)
T TIGR00814       331 IAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV  376 (397)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence            5566778888888888998888887777777888899999766654

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK15049 L-asparagine permease; Provisional

Probab=97.82  E-value=0.0012  Score=64.00  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY   92 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY   92 (273)
                      .+.+.+.++...+|+|.|-......-+|+|||+   |+.+|++..+...+.++|........
T Consensus       218 g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~  276 (499)
T PRK15049        218 GLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLV  276 (499)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344566777789999999999999999999973   78999999988888888887654433

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.81  E-value=0.00067  Score=64.39  Aligned_cols=200  Identities=11%  Similarity=0.099  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHhccchhhHHHHhhhcCC-------cccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCC-----Cc
Q 024069           34 RSLQALGAIAFAYSFSIILLEIQDTIRSP-------PAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----PN  101 (273)
Q Consensus        34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P-------~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v-----~~  101 (273)
                      ....++++++|||+-|+.+|++...+|+-       +...+|-+|++..+..+..++|+..-..+-..-+.+-     ++
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q  289 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ  289 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            46789999999999999999999985441       0114778888888888888888876544444433322     11


Q ss_pred             cc--c----cccCCC-CC-----hHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhc-c-CCCCcccCCcccccCCCc
Q 024069          102 NL--L----TGFGFY-NP-----YWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-K-WPKSDLVTAEYEIPIPFW  167 (273)
Q Consensus       102 ~i--l----~~l~~~-~~-----~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~-~-~~~~~~~~~~~~~~~p~~  167 (273)
                      |+  +    +.++.. +.     .+...+..+...+.+..||-=...-++|.++.+..+ . .++.+    +  .     
T Consensus       290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~----~--~-----  358 (443)
T PRK13629        290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT----K--V-----  358 (443)
T ss_pred             CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----c--c-----
Confidence            11  1    112100 01     234445555556677777765566778888887732 1 11111    0  0     


Q ss_pred             cccccchhhhHHHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHH
Q 024069          168 GVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFI  247 (273)
Q Consensus       168 ~~~~~~~~r~~~r~~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l~~~g~~~  247 (273)
                         ..+..+.+...+..+.++++|..=|+.=+++.-+|+--.+.+.|++|...-.|....++.+ .+..|+++.+.|++.
T Consensus       359 ---~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~  434 (443)
T PRK13629        359 ---SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLT  434 (443)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHH
Confidence               0024455566677888889999989988888877777778899999997766543222211 123467777777654


Q ss_pred             H
Q 024069          248 T  248 (273)
Q Consensus       248 ~  248 (273)
                      .
T Consensus       435 i  435 (443)
T PRK13629        435 I  435 (443)
T ss_pred             H
Confidence            3

>PRK10249 phenylalanine transporter; Provisional

Probab=97.80  E-value=0.002  Score=61.78  Aligned_cols=58  Identities=17%  Similarity=0.134  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG   91 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~G   91 (273)
                      .+-+.+.++....|+|.|-.......+|+|||+   |+.+|++..+.....++|.......
T Consensus       207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~~  264 (458)
T PRK10249        207 GWNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVVL  264 (458)
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567889999999999999999999999973   7899999999999999998754433

>PRK10746 putative transport protein YifK; Provisional

Probab=97.77  E-value=0.0019  Score=61.97  Aligned_cols=56  Identities=16%  Similarity=0.071  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC   89 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~   89 (273)
                      .+.+...++....|+|.|-.......+|+|||+   |+.+|++..+...+.++|.....
T Consensus       198 g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~  253 (461)
T PRK10746        198 GWKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIF  253 (461)
T ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667899999999999999999999999983   89999998888888888876543

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.72  E-value=0.004  Score=59.78  Aligned_cols=59  Identities=12%  Similarity=0.150  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 024069           34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG   96 (273)
Q Consensus        34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG   96 (273)
                      +...++....|+|.|-.....+.+|+||+    |+.+|++..+...+.++|..+.+..+...+
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            44578889999999999888888898873    799999999999999999988766554433

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.65  E-value=0.0037  Score=60.04  Aligned_cols=59  Identities=15%  Similarity=0.126  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY   92 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY   92 (273)
                      .+.+.+.++....|+|.|-......-+|+|||+   |+.+|++..+.....++|......-+
T Consensus       209 g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        209 GLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            344677889999999999999999999999973   78999998777777888876655443

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.63  E-value=0.0027  Score=60.80  Aligned_cols=53  Identities=17%  Similarity=0.169  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhh
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC   87 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~v   87 (273)
                      +.+...+++...|+|.|-.......+|+|||+   |+.+|++..+.....++|...
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        199 FTGLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence            44566778889999999999999999999973   789999988888777777654

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.59  E-value=0.0054  Score=58.92  Aligned_cols=57  Identities=18%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhh
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG   91 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~G   91 (273)
                      ..+.+.++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|+......
T Consensus       205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788889999999999999999999973   7899999999999999998876543

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.54  E-value=0.0061  Score=58.27  Aligned_cols=56  Identities=18%  Similarity=0.150  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC   89 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~   89 (273)
                      .+.+.+.++....|+|.|-.......+|+|||+   |+.+|++..+...+.++|.....
T Consensus       197 g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~  252 (457)
T PRK10580        197 GWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTLF  252 (457)
T ss_pred             chHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677888999999999999999999999973   78999998887777777776643

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.51  E-value=0.0085  Score=57.52  Aligned_cols=55  Identities=15%  Similarity=0.178  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC   89 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~   89 (273)
                      +.+...++....|+|.|-.....+-+|+|||+   |+.+|++..+..++.++|.....
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677888999999999999999999999973   79999999999999999998754

>PRK10836 lysine transporter; Provisional

Probab=97.45  E-value=0.012  Score=56.91  Aligned_cols=60  Identities=10%  Similarity=0.080  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcc
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA   94 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~   94 (273)
                      +.+.+.+.....|+|.|-......-+|+|||+   |+.+|++..+...+.++|......-...
T Consensus       204 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~  263 (489)
T PRK10836        204 FAAMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLI  263 (489)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            44455566667899999999999999999973   7999999999999999999775543333

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.45  E-value=0.0069  Score=57.62  Aligned_cols=56  Identities=21%  Similarity=0.329  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM   90 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~   90 (273)
                      +.+.+.++....|+|.|-.......+|+|||+   |+.+|++..+..++.++|......
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence            44566888899999999999999999999973   799999999999999999887553

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.41  E-value=0.0086  Score=57.09  Aligned_cols=60  Identities=22%  Similarity=0.139  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhc
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYA   93 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~   93 (273)
                      .+.+.+.++....|+|.|-.....+.+|+|||+   |+.+|++..+......+|+........
T Consensus       199 g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~  258 (452)
T TIGR01773       199 GIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVVA  258 (452)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence            344677899999999999999999999999973   799999988888888888876544433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.39  E-value=0.016  Score=55.73  Aligned_cols=60  Identities=12%  Similarity=0.045  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 024069           34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG   96 (273)
Q Consensus        34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG   96 (273)
                      ..+.++....|+|.|-......-+|+|||+   |+.+|++..+..++.+++.+..+.-+...|
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455666678899999999999999999973   799999999888776654443333333344

>TIGR00908 2A0305 ethanolamine permease

Probab=97.36  E-value=0.021  Score=54.29  Aligned_cols=56  Identities=5%  Similarity=-0.002  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC   89 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~   89 (273)
                      .+.+.+.++...+|+|.|.......-+|+|||+   |+.+|++..+..++.++|+..-.
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       189 AYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence            345677888889999999999999999999983   78999999999988888876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00909 2A0306 amino acid transporter

Probab=97.34  E-value=0.018  Score=54.37  Aligned_cols=59  Identities=20%  Similarity=0.286  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY   92 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY   92 (273)
                      +..+.+.++...+|+|.|........+|+|||+   |+.+|++..+..++.++|........
T Consensus       193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            444667888899999999999999999999972   78999999999999999998865444

>TIGR00930 2a30 K-Cl cotransporter

Probab=97.32  E-value=0.018  Score=60.13  Aligned_cols=53  Identities=23%  Similarity=0.305  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069           35 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM   90 (273)
Q Consensus        35 ~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~   90 (273)
                      .+..++++.+||+|-.....+-+|+|||+   ++.++++..+..+++++|+++.+.
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778889999988999999999983   799999999999999999998753

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.32  E-value=0.0066  Score=59.71  Aligned_cols=57  Identities=14%  Similarity=0.208  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM   90 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~   90 (273)
                      .+.+.+.+.....|+|.|-......-+|+|||+   |+.+|++..+..+++++|..+.+.
T Consensus       229 g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~  285 (557)
T TIGR00906       229 GFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA  285 (557)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            345678889999999999999999999999983   789999999999999999987644

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.31  E-value=0.015  Score=54.74  Aligned_cols=58  Identities=24%  Similarity=0.347  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCC
Q 024069           35 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD   97 (273)
Q Consensus        35 ~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~   97 (273)
                      .+.++...+|+|.|-.......+|+||     |+.+|++..+..++.++|......-....++
T Consensus       190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~  247 (426)
T PF13520_consen  190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPD  247 (426)
T ss_dssp             HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred             hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccc
Confidence            468888999999999999999999887     7999999999999999999886655555444

...

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.22  E-value=0.034  Score=53.42  Aligned_cols=57  Identities=9%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY   92 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY   92 (273)
                      ..+...++....|+|.|-.....+-+|+|| +   |+.+|++..+..++.++|........
T Consensus       198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667888899999999999999999998 3   79999999999999999988765433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.11  E-value=0.04  Score=53.57  Aligned_cols=51  Identities=16%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhh
Q 024069           35 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCG   88 (273)
Q Consensus        35 ~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg   88 (273)
                      ....+..++|+|.|-......-+|||||+   |+++|++..+..++.++|.+..
T Consensus       196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       196 TLVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence            34455557999999999999999999983   7999999999998888887644

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.11  E-value=0.046  Score=52.91  Aligned_cols=54  Identities=22%  Similarity=0.187  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069           33 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC   89 (273)
Q Consensus        33 ~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~   89 (273)
                      .+.+.++....|+|.|-.......+|+|||+   |+.+|++..+...+..+|.+..+
T Consensus       211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~  264 (496)
T PRK15238        211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF  264 (496)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence            3456677889999999999999999999983   79999999999999999987644

>TIGR00911 2A0308 L-type amino acid transporter

Probab=96.69  E-value=0.04  Score=53.29  Aligned_cols=58  Identities=19%  Similarity=0.173  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhh
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG   91 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~G   91 (273)
                      +..+...++....|+|.|-.....+.+|+|||+   |+.+|++..+..++.++|.++...-
T Consensus       233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667889999999999999999999999983   7899999999999999999885443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.66  E-value=0.16  Score=47.98  Aligned_cols=61  Identities=16%  Similarity=0.319  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCC
Q 024069           34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD   97 (273)
Q Consensus        34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~   97 (273)
                      ....+++...++|.|-.......+|+|||+   |+.+|++..++.++.++|.......-...++
T Consensus       202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            577889999999999999999999999972   6899999999999999999998877777765

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.34  E-value=0.73  Score=44.28  Aligned_cols=56  Identities=13%  Similarity=-0.069  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069           34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY   92 (273)
Q Consensus        34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY   92 (273)
                      ..+.+.....|+|.|-.....+-+|+|||+   |+.+|++..+..+..++|.+.-+...
T Consensus       214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~  269 (475)
T TIGR03428       214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILGAL  269 (475)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566678899999999999999999973   79999999999888776655544333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.31  E-value=0.13  Score=49.36  Aligned_cols=179  Identities=16%  Similarity=0.157  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCC
Q 024069           30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGF  109 (273)
Q Consensus        30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~  109 (273)
                      .+.-+.-.++=...|||.|=..+..+-+|+|||+   |+++++...|+.+++++|..+=+..+..   -..+.++.+-..
T Consensus       201 ~~~g~i~lafysglfa~~GWd~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~v---ls~~e~l~S~aV  274 (479)
T KOG1287|consen  201 TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTV---LSPDEILSSDAV  274 (479)
T ss_pred             CchHHHHHHHHHhhhcccCchhhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEe---cCHHHhcccchH
Confidence            3444556788889999999999999999999983   8999999999999999999986654422   223344333110


Q ss_pred             -------CCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHh-ccCCCCcccCCccccc-CCCccccccchhhhHHH
Q 024069          110 -------YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSA-KKWPKSDLVTAEYEIP-IPFWGVYQLNLFRLVWR  180 (273)
Q Consensus       110 -------~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~-~~~~~~~~~~~~~~~~-~p~~~~~~~~~~r~~~r  180 (273)
                             ....+. -++.++..++.+.+.--.++...+.+...-. .+.|+  ..+..+..+ .|        +..+   
T Consensus       275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~--~~s~i~~~~~TP--------~~al---  340 (479)
T KOG1287|consen  275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPA--FFSMISVRRFTP--------RPAL---  340 (479)
T ss_pred             HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccH--HHHhhcCCCCCC--------hHHH---
Confidence                   001111 1222222233333221111111111111111 11111  000000000 01        1111   


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 024069          181 TLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR  229 (273)
Q Consensus       181 ~~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~  229 (273)
                       .+..+..++...+.+++.+++.++=.......+.+=+++|+|.|+++.
T Consensus       341 -lf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~  388 (479)
T KOG1287|consen  341 -LFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL  388 (479)
T ss_pred             -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence             223334444455668999999999888888888899999999887664

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=95.96  E-value=0.12  Score=49.20  Aligned_cols=181  Identities=12%  Similarity=0.155  Sum_probs=96.1

Q ss_pred             hhHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhH-----HHHHHHHHHHhhhhhhhhcccCCCCCc--
Q 024069           29 TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL-----FSIIVTTTFYLLCGCMGYAAFGDLAPN--  101 (273)
Q Consensus        29 ~~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~-----~s~~i~~~~y~~vg~~GY~~fG~~v~~--  101 (273)
                      |..+.+.+.++-..+|||+|..++=.-.+|-+||+   |..+|+.+     +...-+..+.++..+.-|-.++++.+.  
T Consensus       199 P~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV  275 (462)
T COG1113         199 PNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV  275 (462)
T ss_pred             CCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence            35666888999999999999999999999999983   67777764     444455555566677777777775544  


Q ss_pred             ccccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHH
Q 024069          102 NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRT  181 (273)
Q Consensus       102 ~il~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~  181 (273)
                      .+...++   -.+...+.|.........+.-=-++..-+.+..+-.+. ...+...+-.....|        +.-+.+.+
T Consensus       276 ~~f~~iG---i~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g-~APk~~~klsk~gVP--------~~ai~~s~  343 (462)
T COG1113         276 TVFSLIG---IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQG-DAPKAFAKLSKRGVP--------VNAILLSA  343 (462)
T ss_pred             HHHHHcC---CcccccceeEEEeechhhcccccccccchHHHHHhhcC-cccHhHhhccccCCC--------HHHHHHHH
Confidence            2223332   22222233322222222221111122233333332111 011111110001111        33455667


Q ss_pred             HHHHHHHHHHhhccchHHHHHHhhhhhhhh--HHHHHHHHHHHHHhc
Q 024069          182 LFVVLTTLISMLLPFFNDVVGILGAMGFWP--LTVYFPIEMYKAQKK  226 (273)
Q Consensus       182 ~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~--l~fi~P~l~~l~l~~  226 (273)
                      ....++.++....|  +.+..++-+.++..  ....+=.+.|+|.|+
T Consensus       344 ~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         344 VVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK  388 (462)
T ss_pred             HHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77788888888999  44444444433322  233344677777765

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=94.76  E-value=0.41  Score=47.10  Aligned_cols=55  Identities=18%  Similarity=0.262  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC   89 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~   89 (273)
                      +-+.+.++-+..|+|.|--.+-..-+|-||||   |+.+++...++..+..+|..+.+
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~  285 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSI  285 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999984   89999999999999999998864

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=93.72  E-value=0.068  Score=51.34  Aligned_cols=66  Identities=23%  Similarity=0.199  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCC
Q 024069           31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA   99 (273)
Q Consensus        31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v   99 (273)
                      ++.+.+.++...+++|.|-......-+|.|||+   |+.+|++..+.....++|.......=...|.+.
T Consensus       198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~  263 (478)
T PF00324_consen  198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDN  263 (478)
T ss_pred             chhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence            466788999999999999999999999999983   799999999999999999887654444444433

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=92.62  E-value=1.3  Score=40.69  Aligned_cols=56  Identities=21%  Similarity=0.380  Sum_probs=47.5

Q ss_pred             HHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCC
Q 024069           40 GAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA   99 (273)
Q Consensus        40 g~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v   99 (273)
                      ....++|.|.....-...+++||    |+.+|+...+..++..+|..+-+..-..+|.+.
T Consensus       186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence            46788998888888888899986    689999999999999999988887777787644

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=90.71  E-value=8.2  Score=37.77  Aligned_cols=180  Identities=15%  Similarity=0.018  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhh-hhhhcccCCC----------
Q 024069           30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCG-CMGYAAFGDL----------   98 (273)
Q Consensus        30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg-~~GY~~fG~~----------   98 (273)
                      ..+-+....+-+..|||+|..++---..|=+||+   |..+|+..-...=...+|...- ++|-.-=.+|          
T Consensus       231 ~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~  307 (541)
T COG0833         231 GGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSG  307 (541)
T ss_pred             cchHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCC
Confidence            4466778889999999999999888889999983   7899998877777777776432 2222222222          


Q ss_pred             -CCcccccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhh
Q 024069           99 -APNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRL  177 (273)
Q Consensus        99 -v~~~il~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~  177 (273)
                       .++|....+...+-...-.+.|+.+..+++.+--=.++..-+.+..+-.... .++...+         .+++..+..-
T Consensus       308 ~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~-APk~f~~---------~~r~GvP~~a  377 (541)
T COG0833         308 VAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGK-APKIFAK---------VDRRGVPLVA  377 (541)
T ss_pred             ccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCC-CchHHHh---------hCCCCCchHH
Confidence             1223222221001123345666666655554432223333455544433211 1111111         0111123333


Q ss_pred             H-HHHHHHHHHHHHHhhccc---hHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 024069          178 V-WRTLFVVLTTLISMLLPF---FNDVVGILGAMGFWPLTVYFPIEMYKAQK  225 (273)
Q Consensus       178 ~-~r~~~v~~~~~iAi~iP~---f~~ll~lvGa~~~~~l~fi~P~l~~l~l~  225 (273)
                      + ++.++-+++++.+.. +.   |+-++++.|..+  .++-+.=++.|++.|
T Consensus       378 l~vt~~fg~lafl~~~~-~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR  426 (541)
T COG0833         378 LLVTLLFGLLAFLNSSF-KETTVFNWLLNISGLSG--FIAWGSICLSHIRFR  426 (541)
T ss_pred             HHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            3 444444555544444 43   778888887655  455555567777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.37
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.9
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.72

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.37  E-value=6.1e-06  Score=76.39  Aligned_cols=64  Identities=9%  Similarity=0.125  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCC
Q 024069           32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL   98 (273)
Q Consensus        32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~   98 (273)
                      ..+.+.++...+|+|.|........+|+|||+   |+.+|++..+..++.++|...........+.+
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            45677889999999999999999999999972   78999999999999999999887766666543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.90  E-value=0.0007  Score=63.62  Aligned_cols=60  Identities=12%  Similarity=0.054  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCC
Q 024069           36 LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL   98 (273)
Q Consensus        36 f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~   98 (273)
                      +.++...+|+|.|........+|+|||+   |+.+|++..+..++.++|+...+......+++
T Consensus       204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            3456778999999999999999999983   78999999999999999999887766666654

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.72  E-value=0.00046  Score=63.66  Aligned_cols=65  Identities=14%  Similarity=0.190  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 024069           29 TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG   96 (273)
Q Consensus        29 ~~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG   96 (273)
                      +.++.+.+.++....|+|.|........+|+|||+   |+.+|++..+..++.++|....+......+
T Consensus       184 ~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          184 PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            44555777888889999999999999999999972   789999999999999999988765554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00