Citrus Sinensis ID: 024090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGW
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEccccEEEEccccccccEEEEEHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MWELICLTLAATAgnnigkvlqkkgtvilpplsfKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALsqapvsviqpvsgcgLAILSIFSHFYLKEVMNAVDWMGITLAGigtigvgaggeeqepssisifqlpWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVfleqgfptmlvpVCISIsiccsgtgfyyqtrglkhgRAIVVSTCAAVASIVTGVVAGMLAlgerlpsaptARFSLLLGW
Flexible Loop (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALgerlpsaptarfslllgw
Low Complexity Region (SEG)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMgitlagigtigvgaggEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRReqemiefevveeiiYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGW
Disordered region (IsUnstruct)
*WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG*****SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLP******F******
Disordered Region (DISOPRED)
MWELICLTLAATAGNNIGKVLQ******************AYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQE**SISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGW
Disordered Region (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGW
Disordered Region (DISPRO)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
P55580	117	Uncharacterized protein y	yes	no	0.408	0.948	0.318	0.0005

>sp|P55580|Y4NH_RHISN Uncharacterized protein y4nH OS=Rhizobium sp. (strain NGR234) GN=NGR_a02340 PE=4 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 5   ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLR 64
           I L  AA   + IG +L K G   LPP +          +   +V G +      LL  +
Sbjct: 6   IILVFAAGLNSCIGNILLKWGRASLPPSAGLADTF----LTPGFVGGVVFYGINVLLFAK 61

Query: 65  ALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119
           AL    VSV  P+ +G G A+L I SH++  E  +   W+G+ L  +G I +  GG
Sbjct: 62  ALDSLEVSVAYPILAGSGFAMLIIASHYFFGEPFHLHKWIGVALVLVGIIFLARGG 117

Rhizobium sp. (strain NGR234) (taxid: 394)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
224114565	359	predicted protein [Populus trichocarpa]	1.0	0.757	0.826	1e-134
356552374	343	PREDICTED: uncharacterized protein LOC10	0.974	0.772	0.845	1e-129
449447136	344	PREDICTED: uncharacterized protein LOC10	0.966	0.764	0.859	1e-129
356564039	343	PREDICTED: uncharacterized protein LOC10	0.974	0.772	0.837	1e-127
357437377	343	hypothetical protein MTR_1g015820 [Medic	0.974	0.772	0.845	1e-127
255550079	344	conserved hypothetical protein [Ricinus	0.974	0.770	0.879	1e-127
297811313	344	hypothetical protein ARALYDRAFT_909170 [	0.966	0.764	0.844	1e-125
22326741	344	uncharacterized protein [Arabidopsis tha	0.966	0.764	0.840	1e-125
356507006	344	PREDICTED: uncharacterized protein LOC10	0.977	0.773	0.853	1e-124
224088802	332	predicted protein [Populus trichocarpa]	0.959	0.786	0.819	1e-124

>gi|224114565|ref|XP_002332339.1| predicted protein [Populus trichocarpa] gi|222831906|gb|EEE70383.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/289 (82%), Positives = 261/289 (90%), Gaps = 17/289 (5%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK-----------------VIRAYA 43
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLSFKLK                 VIRAYA
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTLILPPLSFKLKACIFYPLSFSFFSLPPLVIRAYA 60

Query: 44  VNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM 103
            NKAW+IGFL+DI GALLMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+
Sbjct: 61  ANKAWIIGFLIDICGALLMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWI 120

Query: 104 GITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMI 163
           GITLAGIGTIGVGAGGEEQE SS+SIFQLPWLAF+V++LFV+LNGWLR+ +HQRR  EM+
Sbjct: 121 GITLAGIGTIGVGAGGEEQEASSVSIFQLPWLAFLVALLFVVLNGWLRVYRHQRRAHEMM 180

Query: 164 EFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQT 223
           ++EVVEEIIYGLESGILFGMASVISK+GFVFLEQGF  MLVP+C+SISICCS TGFYYQT
Sbjct: 181 DYEVVEEIIYGLESGILFGMASVISKMGFVFLEQGFSRMLVPICVSISICCSATGFYYQT 240

Query: 224 RGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGW 272
           +GLKHGRAIVVSTCAAVASIVTGV+AGMLALGE+LPSAPTARFSLLLGW
Sbjct: 241 QGLKHGRAIVVSTCAAVASIVTGVLAGMLALGEQLPSAPTARFSLLLGW 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552374|ref|XP_003544543.1| PREDICTED: uncharacterized protein LOC100779611 [Glycine max]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/265 (84%), Positives = 249/265 (93%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE + LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFLMDI GAL
Sbjct: 1   MWESVVLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLMDILGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAFVV ILF+LL+GWLRICK QRREQEM+E++VVEE+IYGLESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFVVFILFILLSGWLRICKCQRREQEMVEYDVVEEVIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGM+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTGFYYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGFYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTAR 265
           ASI+TGV+AGMLALGERLPS P AR
Sbjct: 241 ASILTGVLAGMLALGERLPSEPKAR 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447136|ref|XP_004141325.1| PREDICTED: uncharacterized protein LOC101210517 [Cucumis sativus] gi|449486673|ref|XP_004157364.1| PREDICTED: uncharacterized protein LOC101228106 [Cucumis sativus]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/263 (85%), Positives = 245/263 (93%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGK+LQKKGTVILPPLSFKLKVIRAYA NK W+IGFLMDIFGA+
Sbjct: 1   MWEPICLTLAAAAGNNIGKILQKKGTVILPPLSFKLKVIRAYAFNKTWIIGFLMDIFGAV 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVS+IQPVSGCGLAILSIFSHFYLKE+MN VDWMGI LAGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSIIQPVSGCGLAILSIFSHFYLKEIMNVVDWMGIMLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQ+ S+IS+F LPWLAF+++ILFVLLNGWL   K QRREQE++EFEVVEEIIYGLESGIL
Sbjct: 121 EQKASAISVFHLPWLAFIMTILFVLLNGWLHFYKRQRREQELMEFEVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASVISK+GF+FLEQGF  +LVP+CI ISICCS TGFYYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVISKMGFLFLEQGFHQILVPICILISICCSATGFYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPT 263
           ASIVTGV+AGMLALGE LPS+PT
Sbjct: 241 ASIVTGVLAGMLALGEELPSSPT 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564039|ref|XP_003550264.1| PREDICTED: uncharacterized protein LOC100819228 [Glycine max]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/265 (83%), Positives = 248/265 (93%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFL+DIFGAL
Sbjct: 1   MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLIDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAF+V ILF+LL+GWLRICK QRREQEM+E++VVEE+IYG ESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFIVFILFILLSGWLRICKRQRREQEMMEYDVVEEVIYGFESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGM+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTG YYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGIYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTAR 265
           ASI+TGV+AGMLALGERLPS P AR
Sbjct: 241 ASILTGVLAGMLALGERLPSEPKAR 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437377|ref|XP_003588964.1| hypothetical protein MTR_1g015820 [Medicago truncatula] gi|355478012|gb|AES59215.1| hypothetical protein MTR_1g015820 [Medicago truncatula]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/266 (84%), Positives = 248/266 (93%), Gaps = 1/266 (0%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIRAYA+NK W IGFLMDIFGAL
Sbjct: 1   MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRAYALNKTWSIGFLMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYL+EVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLQEVMNVVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQ-EPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGI 179
           EQ E  ++SIF +PWLAFVVSILF+LLNGWLRI K QRREQEM+E++VVEEIIYGLESGI
Sbjct: 121 EQQEMVALSIFHIPWLAFVVSILFILLNGWLRIYKRQRREQEMMEYDVVEEIIYGLESGI 180

Query: 180 LFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAA 239
           LFGM+SVISK+GF+FLEQGFP +LVP+C+ IS+ CSG GFYYQTRGLKHGRAI+VSTCAA
Sbjct: 181 LFGMSSVISKMGFLFLEQGFPKILVPICLLISVSCSGIGFYYQTRGLKHGRAIIVSTCAA 240

Query: 240 VASIVTGVVAGMLALGERLPSAPTAR 265
           VASI+TGV+AGMLALGERLPSAP AR
Sbjct: 241 VASILTGVLAGMLALGERLPSAPKAR 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550079|ref|XP_002516090.1| conserved hypothetical protein [Ricinus communis] gi|223544576|gb|EEF46092.1| conserved hypothetical protein [Ricinus communis]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/265 (87%), Positives = 251/265 (94%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNK+WVIGFLMDI GA+
Sbjct: 1   MWESICLTLAAAAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKSWVIGFLMDICGAM 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+GITLAGIGTIGVGAGGE
Sbjct: 61  LMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWIGITLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE SSIS+FQLPWLAF+V++LF+ LNGWLR+CK +RREQE +E+EV+EEIIYGLESGIL
Sbjct: 121 EQEVSSISVFQLPWLAFIVAVLFIGLNGWLRVCKRERREQETMEYEVIEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASVISK+ FVFLEQGF  MLVP+CISISIC S TGFYYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVISKMAFVFLEQGFSRMLVPICISISICSSATGFYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTAR 265
           ASIVTGV+AGMLALGERLPSAP AR
Sbjct: 241 ASIVTGVLAGMLALGERLPSAPAAR 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811313|ref|XP_002873540.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata] gi|297319377|gb|EFH49799.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/263 (84%), Positives = 242/263 (92%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKVIRAYAVNK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVIRAYAVNKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASV+SK+GFVF+EQGF  M +P+CISISICCSGTGF+YQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVVSKMGFVFVEQGFSAMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPT 263
           ASIVTGVVAGM ALGE+LP++P+
Sbjct: 241 ASIVTGVVAGMFALGEKLPTSPS 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326741|ref|NP_196757.2| uncharacterized protein [Arabidopsis thaliana] gi|20260356|gb|AAM13076.1| putative protein [Arabidopsis thaliana] gi|22136174|gb|AAM91165.1| putative protein [Arabidopsis thaliana] gi|332004362|gb|AED91745.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/263 (84%), Positives = 242/263 (92%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPT 263
           ASIVTGVVAGM ALGE+LP++P+
Sbjct: 241 ASIVTGVVAGMFALGEKLPTSPS 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507006|ref|XP_003522263.1| PREDICTED: uncharacterized protein LOC100803982 [Glycine max]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/266 (85%), Positives = 249/266 (93%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+ ATAGNNIGK+LQKKGTVILPPLSFKLKVIRAYA+NK WVIGFLMDIFGAL
Sbjct: 1   MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWVIGFLMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIYGLESGIL
Sbjct: 121 EQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASVISK+GF+FLEQGFP +LVP+CI IS+C SGTGFYYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTARF 266
           ASI+TGV+AGMLALGERLPSAP ARF
Sbjct: 241 ASILTGVLAGMLALGERLPSAPKARF 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088802|ref|XP_002308547.1| predicted protein [Populus trichocarpa] gi|222854523|gb|EEE92070.1| predicted protein [Populus trichocarpa]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/272 (81%), Positives = 243/272 (89%), Gaps = 11/272 (4%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAG+NIGKVLQKKGTVI           RAYA N AW+IGFLMDI GAL
Sbjct: 1   MWESICLTLAATAGSNIGKVLQKKGTVI-----------RAYAANVAWIIGFLMDIIGAL 49

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LML+ALS APVSVIQPVSGCGLAILS+FSHFYLKEVMN +DWMGITLAGIGTIGVGAGGE
Sbjct: 50  LMLKALSLAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWMGITLAGIGTIGVGAGGE 109

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE SSISI QLPWLA +V+ILFV+LNGWLR+ + QRR  E +++EVVEEIIYGLESGIL
Sbjct: 110 EQEASSISILQLPWLALLVAILFVVLNGWLRMYRRQRRAHETMDYEVVEEIIYGLESGIL 169

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASVISK+GFVFLEQGF  MLVP+C++ISICCS TGFYYQT+GLKHGRAIV+STCAAV
Sbjct: 170 FGMASVISKMGFVFLEQGFSKMLVPLCLTISICCSATGFYYQTQGLKHGRAIVLSTCAAV 229

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGW 272
           ASIVTGV+AGMLALGERLPSAP ARFSLLLGW
Sbjct: 230 ASIVTGVLAGMLALGERLPSAPAARFSLLLGW 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2143044	344	AT5G11960 "AT5G11960" [Arabido	1.0	0.790	0.738	8.6e-104

TAIR|locus:2143044 AT5G11960 "AT5G11960" [Arabidopsis thaliana (taxid:3702)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 201/272 (73%), Positives = 219/272 (80%)

Query:     1 MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
             MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct:     1 MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query:    61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMXXXXXXXXXXXXXXXXE 120
             LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+                E
Sbjct:    61 LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query:   121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRRXXXXXXXXXXXXXXYGLESGIL 180
             EQE S IS+FQL WLA VV+ILFVLLN WL I K QRR              YGLESGIL
Sbjct:   121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query:   181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
             FGMASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQTRGLKHGRAIVVSTCAAV
Sbjct:   181 FGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTCAAV 240

Query:   241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGW 272
             ASIVTGVVAGM ALGE+LP++P+ R  LLLGW
Sbjct:   241 ASIVTGVVAGMFALGEKLPTSPSGRLLLLLGW 272


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.141   0.440    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      272       242   0.00096  113 3  11 22  0.46    32
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  178 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.94u 0.14s 18.08t   Elapsed:  00:00:00
  Total cpu time:  17.94u 0.14s 18.08t   Elapsed:  00:00:00
  Start:  Sat May 11 10:14:17 2013   End:  Sat May 11 10:14:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
COG2510	140	COG2510, COG2510, Predicted membrane protein [Func	0.003

>gnl|CDD|225308 COG2510, COG2510, Predicted membrane protein [Function unknown]

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 58  GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113
             LL  RAL +   S + P+    + +  + S  +L E ++   W+GI L  IG I
Sbjct: 80  SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAI 135

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.92
KOG2922	335	consensus Uncharacterized conserved protein [Funct	99.36
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.28
PRK15430	296	putative chloramphenical resistance permease RarD;	99.15
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.01
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.99
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.97
PRK11689	295	aromatic amino acid exporter; Provisional	98.91
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.78
PLN00411	358	nodulin MtN21 family protein; Provisional	98.74
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.72
PRK11272	292	putative DMT superfamily transporter inner membran	98.69
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.63
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.57
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.56
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.55
COG2510	140	Predicted membrane protein [Function unknown]	98.43
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.37
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.32
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.1
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.09
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.97
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.88
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.84
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.83
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.71
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.67
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.57
PRK11689	295	aromatic amino acid exporter; Provisional	97.54
COG2076	106	EmrE Membrane transporters of cations and cationic	97.53
PRK11431	105	multidrug efflux system protein; Provisional	97.48
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.48
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.45
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.4
PRK11272	292	putative DMT superfamily transporter inner membran	97.4
COG2962	293	RarD Predicted permeases [General function predict	97.39
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.31
PLN00411	358	nodulin MtN21 family protein; Provisional	97.25
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.82
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.71
PRK15430	296	putative chloramphenical resistance permease RarD;	96.61
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.59
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	95.53
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	94.95
KOG4510	346	consensus Permease of the drug/metabolite transpor	94.47
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	93.79
KOG3912	372	consensus Predicted integral membrane protein [Gen	93.77
COG2510	140	Predicted membrane protein [Function unknown]	92.9
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	91.43
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	90.48
KOG4831	125	consensus Unnamed protein [Function unknown]	86.41
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	86.08
PF13536	113	EmrE: Multidrug resistance efflux transporter	84.99
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	83.67
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	83.12
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	82.35
KOG2765	416	consensus Predicted membrane protein [Function unk	80.68

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.92  E-value=8.1e-25  Score=203.40  Aligned_cols=261  Identities=19%  Similarity=0.280  Sum_probs=180.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch-HHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhh
Q 024090            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC   80 (272)
Q Consensus         2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~-~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~   80 (272)
                      .+|+.+|++++++++.|.++||++..|.++.+.+. +...+|+|||.||.|+.++.+|.++|+.||+++|.++|||+++.
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~   85 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGAL   85 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhh
Confidence            57999999999999999999999999887644322 34568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCccchhhH-----HHHHHHHHHHHHHHHHHHHHhh
Q 024090           81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSISIFQL-----PWLAFVVSILFVLLNGWLRICK  154 (272)
Q Consensus        81 ~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  154 (272)
                      ++++..+++++++|||++++||.|+.+++.|..++. .++++++..+.++...     ..+...................
T Consensus        86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~  165 (300)
T PF05653_consen   86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIFFIKP  165 (300)
T ss_pred             hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999998665 3333333222222111     1111111111111101111111


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc---cCcccchhhHHHH---HHHHHHHHHHHHHHhhhcc
Q 024090          155 HQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE---QGFPTMLVPVCIS---ISICCSGTGFYYQTRGLKH  228 (272)
Q Consensus       155 ~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~---~g~~~l~~~~~~~---~~v~~~~~g~~l~q~A~q~  228 (272)
                      |.+         +.+-..+...+++..+.+-..+|.....+.   +|.....+|..|.   .++.+.+...++.|+|++.
T Consensus       166 r~g---------~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~  236 (300)
T PF05653_consen  166 RYG---------RRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKR  236 (300)
T ss_pred             hhc---------ccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111         123345677777777778888887543332   2333333332222   2344566778888999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhhc
Q 024090          229 GRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLG  271 (272)
Q Consensus       229 G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~~~~~~~~~~~  271 (272)
                      .++..+.+..-+.=-..++.-|...+.|..+.++...+....|
T Consensus       237 fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G  279 (300)
T PF05653_consen  237 FDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCG  279 (300)
T ss_pred             ccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence            9965333434455667788899999999888887766665544

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=5.1e-13  Score=123.98  Aligned_cols=250  Identities=20%  Similarity=0.264  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCccc-hHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHH
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFK-LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGL   82 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~-~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l   82 (272)
                      +.++|+.+++.++.+..+||++..+..+.+.+ .+.=.+|++.|.||+|+..|++|..+++.|++++|.++|.|++++++
T Consensus        22 G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsv  101 (335)
T KOG2922|consen   22 GLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSV  101 (335)
T ss_pred             eeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHH
Confidence            56789999999999999999999876542211 11113578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCccch-hh----HHHHHHHHHHHHHHHHHHHHHhhhh
Q 024090           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSISI-FQ----LPWLAFVVSILFVLLNGWLRICKHQ  156 (272)
Q Consensus        83 ~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~-~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~  156 (272)
                      ++.++++++++||+++..+.+|..++++|..++. -++++++..+..+ ++    +..+.-........  +....--+.
T Consensus       102 i~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~--~il~~~~~p  179 (335)
T KOG2922|consen  102 IISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIV--LILIFFYAP  179 (335)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHH--HHHheeecc
Confidence            9999999999999999999999999999998776 3333333322211 11    11111111111110  111111111


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc---cCcccchhhHHHH---HHHHHHHHHHHHHHhhhccCc
Q 024090          157 RREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE---QGFPTMLVPVCIS---ISICCSGTGFYYQTRGLKHGR  230 (272)
Q Consensus       157 ~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~---~g~~~l~~~~~~~---~~v~~~~~g~~l~q~A~q~G~  230 (272)
                      |.++       ..-+.|-..++..=.++-..+|..-..+.   +|...+..|..|.   .++.+...-+...++|+|.=+
T Consensus       180 ~~g~-------tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fn  252 (335)
T KOG2922|consen  180 RYGQ-------TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFN  252 (335)
T ss_pred             cccc-------cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1111       01233444444442334444665432221   3444444443222   222333344556677888777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCh
Q 024090          231 AIVVSTCAAVASIVTGVVAGMLALGERLPSAP  262 (272)
Q Consensus       231 ~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~~  262 (272)
                      ...+.+.--|.-....+..|...|-|--..+.
T Consensus       253 tslV~PiyyV~fTtl~I~as~I~Fkew~~~~~  284 (335)
T KOG2922|consen  253 TSIVSPIYYVMFTTLVILASAILFKEWSGQDA  284 (335)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence            44333333344455556777777777655443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.28  E-value=8e-10  Score=101.02  Aligned_cols=243  Identities=14%  Similarity=0.104  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc--c--hH-HH--HHH-------hh--cHhHH----HHHHHHHHHHHHHH
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF--K--LK-VI--RAY-------AV--NKAWV----IGFLMDIFGALLML   63 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~--~--~~-~~--~~l-------lr--~p~W~----~G~~~~~~G~~~~~   63 (272)
                      +.++.+.++++++..+.++||..++.+....  .  .. .+  ...       .+  ++.|+    .+.......+.+..
T Consensus         2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T TIGR03340         2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA   81 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999987766443111  0  00 00  001       11  11222    34445667778889


Q ss_pred             HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHHHHHH
Q 024090           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILF  143 (272)
Q Consensus        64 ~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (272)
                      .|+...|.+.++|+..++.+++.+++..++|||+++++|.|+.+...|+..+..++.++.  ......   ..+..+...
T Consensus        82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~--~~~g~~---~~l~aal~~  156 (281)
T TIGR03340        82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQH--RRKAYA---WALAAALGT  156 (281)
T ss_pred             HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccccc--chhHHH---HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987653221111  111111   112111111


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCcccchhhHHHHHHHHHHHHHHHHH
Q 024090          144 VLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQ  222 (272)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG-~~fG~~A~l~K~~~~~~~~g~~~l~~~~~~~~~v~~~~~g~~l~  222 (272)
                      +   .+....|+...+..... .......++...+ +.+...... +   +..+............+...+.+..++.++
T Consensus       157 a---~~~i~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~s~l~~~l~  228 (281)
T TIGR03340       157 A---IYSLSDKAAALGVPAFY-SALGYLGIGFLAMGWPFLLLYLK-R---HGRSMFPYARQILPSATLGGLMIGGAYALV  228 (281)
T ss_pred             H---Hhhhhccccccchhccc-ccHHHHHHHHHHHHHHHHHHHHH-H---hccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   22223333211100000 0000111121111 222221111 0   000000000011112334456677889999


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024090          223 TRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS  260 (272)
Q Consensus       223 q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~  260 (272)
                      .+++|..++..+.+ ....+|++++.+|+.+|||+...
T Consensus       229 ~~al~~~~a~~~~~-~~~l~pv~a~l~g~~~lgE~~~~  265 (281)
T TIGR03340       229 LWAMTRLPVATVVA-LRNTSIVFAVVLGIWFLNERWYL  265 (281)
T ss_pred             HHHHhhCCceEEEe-ecccHHHHHHHHHHHHhCCCccH
Confidence            99999988543333 24578999999999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.15  E-value=5.3e-08  Score=89.81  Aligned_cols=238  Identities=13%  Similarity=0.042  Sum_probs=138.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-chH-------------------HHHHHhhcHhHH----HHHHHHHH
Q 024090            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK-------------------VIRAYAVNKAWV----IGFLMDIF   57 (272)
Q Consensus         2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~-------------------~~~~llr~p~W~----~G~~~~~~   57 (272)
                      ..++.+.++++++++.....-|.. .+.++... -.|                   ..++..++++++    .|......
T Consensus         7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (296)
T PRK15430          7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGG   85 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            457888999999999888888764 34332221 000                   000111233332    55666777


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHH
Q 024090           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF  137 (272)
Q Consensus        58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~  137 (272)
                      .+.+...++...|.+.+.-+..+..+++.+++..++|||+++++|.|+.+..+|+.++..+. ++.    .     ...+
T Consensus        86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~-~~~----~-----~~~l  155 (296)
T PRK15430         86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF-GSL----P-----IIAL  155 (296)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc-CCc----c-----HHHH
Confidence            88999999999999999999999999999999999999999999999999999998765321 110    1     1112


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcccchhhHHHHHHHHHHHH
Q 024090          138 VVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGT  217 (272)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~~~~~v~~~~~  217 (272)
                      ..+...+   .+....||......   ........+-...+..+...  ...  ................++.....+..
T Consensus       156 ~aa~~~a---~~~i~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~g~~t~i  225 (296)
T PRK15430        156 GLAFSFA---FYGLVRKKIAVEAQ---TGMLIETMWLLPVAAIYLFA--IAD--SSTSHMGQNPMSLNLLLIAAGIVTTV  225 (296)
T ss_pred             HHHHHHH---HHHHHHHhcCCCCc---hhHHHHHHHHHHHHHHHHHH--Hcc--CCcccccCCcHHHHHHHHHHHHHHHH
Confidence            2111111   22223333221100   00011111111122211100  000  00000000001011112222335668


Q ss_pred             HHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090          218 GFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  261 (272)
Q Consensus       218 g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~  261 (272)
                      ++++..+++|.-++..+.. .+..||++++.+|..++||+.+..
T Consensus       226 ~~~~~~~a~~~~~a~~~s~-~~~l~Pv~a~~~g~l~l~E~~~~~  268 (296)
T PRK15430        226 PLLCFTAAATRLRLSTLGF-FQYIGPTLMFLLAVTFYGEKPGAD  268 (296)
T ss_pred             HHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHHHHHHcCCCCHH
Confidence            8999999999998655444 357999999999999999998654

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.01  E-value=1.2e-08  Score=84.23  Aligned_cols=118  Identities=18%  Similarity=0.152  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchH--HHHHHhhcH--hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK--VIRAYAVNK--AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS   78 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~--~~~~llr~p--~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~   78 (272)
                      .+.++.+.+.++++.|+.+-|+++++.++.+.+..  .......+|  .-+.|+.+++.++.+-..+++..|++...|+.
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~   81 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL   81 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            36788899999999999999999998765432221  233456677  55699999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH--HhccccchhhHHHHHHHHHHHHhhccCCC
Q 024090           79 GCGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGAGGE  120 (272)
Q Consensus        79 ~~~l~~~~~lsa~--~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~  120 (272)
                      .....+....+..  ++||++|.++|+|+.++++|++.+..+++
T Consensus        82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            8887777777775  89999999999999999999998875444

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.99  E-value=2.6e-07  Score=82.45  Aligned_cols=196  Identities=16%  Similarity=0.097  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccc
Q 024090           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS  128 (272)
Q Consensus        49 ~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~  128 (272)
                      ..|.......+.+...|+...|.+.+.++..+..+++.+++..++|||+++++|.|+.+..+|+..+...++.+.  .  
T Consensus        51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~--~--  126 (260)
T TIGR00950        51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSI--N--  126 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccc--c--
Confidence            356666778888899999999999999999999999999999999999999999999999999988764332211  1  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcccchhh-HH
Q 024090          129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVP-VC  207 (272)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~-~~  207 (272)
                       .......+..+....   ......|+..+...   +.......+....|..+-..-...+   +. +... ...+. ..
T Consensus       127 -~~G~~~~l~a~~~~a---~~~~~~k~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~~~~-~~~~~~~~  194 (260)
T TIGR00950       127 -PAGLLLGLGSGISFA---LGTVLYKRLVKKEG---PELLQFTGWVLLLGALLLLPFAWFL---GP-NPQA-LSLQWGAL  194 (260)
T ss_pred             -HHHHHHHHHHHHHHH---HHHHHHhHHhhcCC---chHHHHHHHHHHHHHHHHHHHHHhc---CC-CCCc-chHHHHHH
Confidence             111111222222111   12223333221100   0000110011122211111111110   00 0001 11111 12


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090          208 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  261 (272)
Q Consensus       208 ~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~  261 (272)
                      .+..+..+..++.++.++.|..++..+.. ....+|+++..+++.++||+.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~-~~~~~pv~~~ll~~~~~~E~~~~~  247 (260)
T TIGR00950       195 LYLGLIGTALAYFLWNKGLTLVDPSAASI-LALAEPLVALLLGLLILGETLSLP  247 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHHHHHHHHHhCCCCCHH
Confidence            33444456788899999999988655554 457999999999999999998643

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.97  E-value=4.9e-07  Score=83.46  Aligned_cols=248  Identities=16%  Similarity=0.146  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCcc-chHH------HHHHhhcH--hH--HH--HHHHHHHHHHHHHHHHhh-cC
Q 024090            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IRAYAVNK--AW--VI--GFLMDIFGALLMLRALSQ-AP   70 (272)
Q Consensus         5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~~------~~~llr~p--~W--~~--G~~~~~~G~~~~~~AL~~-~p   70 (272)
                      .+++++++++.+.....-|.+.++.++... ..|.      +.-+.+++  +|  +.  |+......+.+.+.++.. .|
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   85 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMP   85 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            356788889999999888887766554331 1121      11122221  11  22  222223333455667776 47


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024090           71 VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWL  150 (272)
Q Consensus        71 lsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (272)
                      .+...-+..+..+++.+++..++|||+++++|+++.+..+|+..+..++.+..+.+   ..-...++..+...+   .+.
T Consensus        86 a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~---~~G~~l~l~aal~~a---~~~  159 (299)
T PRK11453         86 AGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVA---MLGFMLTLAAAFSWA---CGN  159 (299)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchh---HHHHHHHHHHHHHHH---HHH
Confidence            77777777888889999999999999999999999999999987764322111111   101112222222222   222


Q ss_pred             HHhhhhhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhc--cCcccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 024090          151 RICKHQRREQEMIEFEVVEEIIY-GLESGILFGMASVISKLGFVFLE--QGFPTMLVPVCISISICCSGTGFYYQTRGLK  227 (272)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~ra~ll-g~aaG~~fG~~A~l~K~~~~~~~--~g~~~l~~~~~~~~~v~~~~~g~~l~q~A~q  227 (272)
                      ...|+..+..  +.+....-..+ ...+.+.+...+.....-.+..+  ..+..-.-....|..+..++.+++++.+++|
T Consensus       160 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~  237 (299)
T PRK11453        160 IFNKKIMSHS--TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLG  237 (299)
T ss_pred             HHHHHHhccc--CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322110  00000111111 22222333322221110000000  0000001112244557788899999999998


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090          228 HGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  261 (272)
Q Consensus       228 ~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~  261 (272)
                      .-++..+.. ....||+++..+|+.++||+....
T Consensus       238 ~~~a~~~s~-~~~l~Pv~a~~~~~l~lgE~~~~~  270 (299)
T PRK11453        238 RYETWRVAP-LSLLVPVVGLASAALLLDERLTGL  270 (299)
T ss_pred             hCCHHHHHH-HHHHHHHHHHHHHHHHhCCCccHH
Confidence            777543333 346899999999999999998653

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.91  E-value=9.2e-07  Score=81.56  Aligned_cols=242  Identities=14%  Similarity=0.077  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-chHH------HHHH-----hhcHhH---HHHHHHHHHHHHHHHHHHhh
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IRAY-----AVNKAW---VIGFLMDIFGALLMLRALSQ   68 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~~------~~~l-----lr~p~W---~~G~~~~~~G~~~~~~AL~~   68 (272)
                      +.++++.+.++.+......|.+..+.|+... ..|.      +.-.     .|+..|   ..|.........++..++..
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~   84 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY   84 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4667888888989888899988877765432 1111      1111     111111   22222222333344455543


Q ss_pred             ----cCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCC----Cc-cchhhHHHHHHHH
Q 024090           69 ----APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEP----SS-ISIFQLPWLAFVV  139 (272)
Q Consensus        69 ----~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~----~~-~~~~~~~~~~~~~  139 (272)
                          .|...+.-+..+..+++.+++..++|||+++++|.|+.+...|+.++..++.+...    +. .+...-....+..
T Consensus        85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~a  164 (295)
T PRK11689         85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIG  164 (295)
T ss_pred             hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHH
Confidence                34444444556677899999999999999999999999999999877643221100    00 0000000112222


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcccchhhHHHHHHHHHHHHHH
Q 024090          140 SILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGF  219 (272)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~~~~~v~~~~~g~  219 (272)
                      +...+   .+....||.+++..     . ..... ...++.+-......    +.....+..-.-....+.. ..+..++
T Consensus       165 a~~~A---~~~v~~k~~~~~~~-----~-~~~~~-~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~~~-~~t~~~~  229 (295)
T PRK11689        165 AFIWA---AYCNVTRKYARGKN-----G-ITLFF-ILTALALWIKYFLS----PQPAMVFSLPAIIKLLLAA-AAMGFGY  229 (295)
T ss_pred             HHHHH---HHHHHHhhccCCCC-----c-hhHHH-HHHHHHHHHHHHHh----cCccccCCHHHHHHHHHHH-HHHHHHH
Confidence            11111   22334444332211     0 11111 11222221111110    0000011100011112232 4577789


Q ss_pred             HHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090          220 YYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  261 (272)
Q Consensus       220 ~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~  261 (272)
                      +++.+++|..++..+.. ....||++++.+|+.++||++...
T Consensus       230 ~l~~~al~~~~a~~~s~-~~~l~Pv~a~i~~~~~lgE~~~~~  270 (295)
T PRK11689        230 AAWNVGILHGNMTLLAT-ASYFTPVLSAALAALLLSTPLSFS  270 (295)
T ss_pred             HHHHHHHHccCHHHHHH-HHHhHHHHHHHHHHHHhCCCCcHH
Confidence            99999999998665444 457999999999999999998653

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.78  E-value=1.5e-07  Score=75.59  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHHH--HHHHHHHHHHHHHHHHhhcCchhhhhhhhhHH
Q 024090            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVI--GFLMDIFGALLMLRALSQAPVSVIQPVSGCGL   82 (272)
Q Consensus         5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~~--G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l   82 (272)
                      .++-+++.++...|+.+.|++.+..|+...+        .++..+.  ++..++..+.+...+++..|+++.+|+..++.
T Consensus         3 ~~~l~~ai~~ev~g~~~lK~s~~~~~~~~~~--------~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~   74 (111)
T PRK15051          3 WLTLVFASLLSVAGQLCQKQATRPVAIGKRR--------KHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNF   74 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcchhh--------hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence            4556677888889999999987655422111        0122233  34778889999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        83 ~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      +++.+++.+++|||+|.++|+|+.+++.|+++++
T Consensus        75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998875

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.74  E-value=1.4e-05  Score=76.44  Aligned_cols=203  Identities=15%  Similarity=0.137  Sum_probs=111.2

Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHHhhcc-CCCCC--------
Q 024090           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA-GGEEQ--------  122 (272)
Q Consensus        58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~------l~~rl~~~ew~gv~l~~~Gl~~l~~-~~~~~--------  122 (272)
                      -+.++..++..-|-+..-=+..+..+++.++++.+      +|||+++++|+|+.++..|+.++.. .++..        
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            33467888899999888888899999999999999      6999999999999999999986542 22110        


Q ss_pred             ------CC-CccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 024090          123 ------EP-SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFL  195 (272)
Q Consensus       123 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~  195 (272)
                            .+ ...+...+............+...+....+|..++  ++. ............++.+...+...... + .
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~-~~~~t~~~~~~~~~~~~~~~l~~~~~-~-~  245 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPA-AFTVSFLYTVCVSIVTSMIGLVVEKN-N-P  245 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCc-HhHHHHHHHHHHHHHHHHHHHHHccC-C-c
Confidence                  00 00011111111111111111111222334432211  101 01112233444444444443321100 0 0


Q ss_pred             ccCcccchhh---HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-hHHHHHh
Q 024090          196 EQGFPTMLVP---VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA-PTARFSL  268 (272)
Q Consensus       196 ~~g~~~l~~~---~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~-~~~~~~~  268 (272)
                       ..+...++.   ..+|..+. ..++++++.++.|+-++..+.. ....+|++++++|+.+|||++... ..+.++.
T Consensus       246 -~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~-~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LI  319 (358)
T PLN00411        246 -SVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAI-FKPLSILIAVVMGAIFLNDSLYLGCLIGGILI  319 (358)
T ss_pred             -ccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHH-HHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence             011111111   12333343 5578999999997776544333 347899999999999999998653 3344433

>TIGR00688 rarD rarD protein

Probab=98.72  E-value=1.2e-05  Score=72.27  Aligned_cols=224  Identities=12%  Similarity=0.085  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc---ch--H--HHH-------------HHhh---cHhHHH----HHHHHH
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF---KL--K--VIR-------------AYAV---NKAWVI----GFLMDI   56 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~---~~--~--~~~-------------~llr---~p~W~~----G~~~~~   56 (272)
                      ++.+.++++++.+......|. ..+.++...   |.  .  .+.             +..+   +++|+.    ...+..
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   81 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG   81 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            678899999999999988887 333443221   10  0  000             0111   122221    222255


Q ss_pred             HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHH
Q 024090           57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA  136 (272)
Q Consensus        57 ~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~  136 (272)
                      ....+...|+...|.+...-+..+..+++.+++..++|||+++++|.++.+...|+..+..++.+     ..     +..
T Consensus        82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~-----~~-----~~~  151 (256)
T TIGR00688        82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGS-----LP-----WEA  151 (256)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCC-----ch-----HHH
Confidence            67788999999999999999999999999999999999999999999999999998766432111     01     112


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc-cCcccc-hhhHHHHHHHHH
Q 024090          137 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE-QGFPTM-LVPVCISISICC  214 (272)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~-~g~~~l-~~~~~~~~~v~~  214 (272)
                      +..+...+   .+....||.++..       ......+...-..+........   +..+ +..... .-.+.++. .+.
T Consensus       152 l~aa~~~a---~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~-g~~  217 (256)
T TIGR00688       152 LVLAFSFT---AYGLIRKALKNTD-------LAGFCLETLSLMPVAIYYLLQT---DFATVQQTNPFPIWLLLVLA-GLI  217 (256)
T ss_pred             HHHHHHHH---HHHHHHhhcCCCC-------cchHHHHHHHHHHHHHHHHHHh---ccCcccccCchhHHHHHHHH-HHH
Confidence            22111111   2222333332211       0111122111111111111110   0000 000000 11222323 345


Q ss_pred             HHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHH
Q 024090          215 SGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLA  253 (272)
Q Consensus       215 ~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~v  253 (272)
                      +..++++.++++|.-++..+.. ....||++++.+|..+
T Consensus       218 t~i~~~l~~~a~~~~~a~~~s~-~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       218 TGTPLLAFVIAANRLPLNLLGL-LQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHcCChHHHHH-HHHHHHHHHHHHHHHh
Confidence            7789999999999999766555 4579999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.69  E-value=4.9e-06  Score=76.53  Aligned_cols=188  Identities=16%  Similarity=0.135  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHHH-hhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccc
Q 024090           50 IGFLMDIFGALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS  128 (272)
Q Consensus        50 ~G~~~~~~G~~~~~~AL-~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~  128 (272)
                      .|......++.+...+. ...|.+...-+..+..+++.+++.. +|||+++++|.|+.+...|+..+..+++.+ ....+
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~-~~~~G  151 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLS-GNPWG  151 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccc-cchHH
Confidence            34444445667777887 8888888888888899999999875 799999999999999999988765332211 11111


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhccCcccchhh--
Q 024090          129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLE-SGILFGMASVISKLGFVFLEQGFPTMLVP--  205 (272)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~a-aG~~fG~~A~l~K~~~~~~~~g~~~l~~~--  205 (272)
                         . +..+..+...+   ......+|..++.    +  .....+... ++........ .      .++......++  
T Consensus       152 ---~-l~~l~a~~~~a---~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~  211 (292)
T PRK11272        152 ---A-ILILIASASWA---FGSVWSSRLPLPV----G--MMAGAAEMLAAGVVLLIASL-L------SGERLTALPTLSG  211 (292)
T ss_pred             ---H-HHHHHHHHHHH---HHHHHHHhcCCCc----c--hHHHHHHHHHHHHHHHHHHH-H------cCCcccccCCHHH
Confidence               1 11222222111   1222333322111    0  111112221 1222111111 1      11111111111  


Q ss_pred             --HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024090          206 --VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS  260 (272)
Q Consensus       206 --~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~  260 (272)
                        .-.|..+..+..++++++.+.|..++..+.. ....||+.+..+|..++||+...
T Consensus       212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~-~~~l~Pi~a~i~~~~~l~E~~t~  267 (292)
T PRK11272        212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATS-YAYVNPVVAVLLGTGLGGETLSP  267 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH-HHHHHHHHHHHHHHHHcCCCCcH
Confidence              2233445567788999999999998654444 35789999999999999999754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.63  E-value=2.9e-07  Score=73.39  Aligned_cols=68  Identities=26%  Similarity=0.394  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCC
Q 024090           51 GFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (272)
Q Consensus        51 G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~  119 (272)
                      |......++.+...|+.+.| ..+.++..++.+|+.+++..++|||+++++|.++.++..|++++..++
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            55555688999999999999 689999999999999999999999999999999999999999886443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.57  E-value=5.8e-05  Score=69.55  Aligned_cols=232  Identities=17%  Similarity=0.137  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-chH------HHHHH-------hhcHhH----HHHHHHHHHHHHHHHH
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK------VIRAY-------AVNKAW----VIGFLMDIFGALLMLR   64 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~------~~~~l-------lr~p~W----~~G~~~~~~G~~~~~~   64 (272)
                      .++.+.+++.++.+.+...-|.+..+.|+... -.|      .+.-+       .+++.|    +.|.. ......+...
T Consensus        12 ~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~   90 (293)
T PRK10532         12 LPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFYL   90 (293)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            57888999999999999999988876654321 001      01000       112233    45543 4556666778


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHHHHHHH
Q 024090           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFV  144 (272)
Q Consensus        65 AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (272)
                      ++...|.+..--+..+..+++.+++    +||.++  +.++.+...|+..+...+.+....  +.. -..+.+..+...+
T Consensus        91 al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~--~~~-G~ll~l~aa~~~a  161 (293)
T PRK10532         91 SIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHV--DLT-GAALALGAGACWA  161 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccC--ChH-HHHHHHHHHHHHH
Confidence            8888888876655555666666655    355544  445556667776654322221111  110 0111222221111


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccC-cccchh--hHHHHHHHHHHHHHHHH
Q 024090          145 LLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQG-FPTMLV--PVCISISICCSGTGFYY  221 (272)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g-~~~l~~--~~~~~~~v~~~~~g~~l  221 (272)
                         ......|+..++..    .... ......+++.....+.        ..++ ...-..  ...+|..++.++.++.+
T Consensus       162 ---~~~v~~r~~~~~~~----~~~~-~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        162 ---IYILSGQRAGAEHG----PATV-AIGSLIAALIFVPIGA--------LQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             ---HHHHHHHHHhccCC----chHH-HHHHHHHHHHHHHHHH--------HccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence               22233343322110    0111 1111222222111111        1111 100011  12346777888999999


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090          222 QTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  261 (272)
Q Consensus       222 ~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~  261 (272)
                      +++++|.-++..+.. ....||+++..+|+.+|||+.+..
T Consensus       226 ~~~~~~~~~a~~as~-~~~l~Pv~a~l~~~l~lgE~~~~~  264 (293)
T PRK10532        226 EMIALTRLPTRTFGT-LMSMEPALAAVSGMIFLGETLTLI  264 (293)
T ss_pred             HHHHHHhcChhHHHH-HHHhHHHHHHHHHHHHhCCCCcHH
Confidence            999999998655444 357999999999999999998654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.56  E-value=3.7e-07  Score=73.76  Aligned_cols=103  Identities=20%  Similarity=0.322  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHhhhccCCCCcc---chHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 024090           12 TAGNNIGKVLQKKGTVILPPLSF---KLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI   87 (272)
Q Consensus        12 A~~~a~g~vlQ~~aa~~~~~~~~---~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~~~~   87 (272)
                      +++-+..+-+-||+++..++...   .......+++||+++.+++++..|.+..+..|+-.|+|+..|+. +++++||++
T Consensus         5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l   84 (113)
T PF10639_consen    5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL   84 (113)
T ss_pred             hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence            45567778888999876443322   13456789999999999999999999999999999999999997 999999999


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHHHh
Q 024090           88 FSHFYLKEVMNAVDWMGITLAGIGTIG  114 (272)
Q Consensus        88 lsa~~l~~rl~~~ew~gv~l~~~Gl~~  114 (272)
                      .+.++.+|..+++.|+|..+++.|+.+
T Consensus        85 ~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   85 TGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHhcCcccchhHHHHHHHHHcCeee
Confidence            997777777788899999999998754

Many members are annotated as potential transmembrane proteins.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.55  E-value=2.1e-05  Score=72.76  Aligned_cols=114  Identities=17%  Similarity=0.100  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-ch--H-----HHHHHhhc-----Hh-HHHHHHH---HHHHHHHHHHHH
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KL--K-----VIRAYAVN-----KA-WVIGFLM---DIFGALLMLRAL   66 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~--~-----~~~~llr~-----p~-W~~G~~~---~~~G~~~~~~AL   66 (272)
                      +++++++++++++.--+..|+-. ..+.... +.  .     ......|+     +. |..|+..   ...|..+++.|.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai   80 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTLGTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM   80 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            67899999999986555555532 1111110 00  0     01111332     22 3446666   888889999999


Q ss_pred             hhcCchhhhhhhh-hHHHHHHHHHHHHhccccchhh----HHHHHHHHHHHHhhccC
Q 024090           67 SQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAG  118 (272)
Q Consensus        67 ~~~plsvVQPl~~-~~l~~~~~lsa~~l~~rl~~~e----w~gv~l~~~Gl~~l~~~  118 (272)
                      +...+++-.|+-. ..+++..+.+..++||+.+++|    +.|+.++++|.+++...
T Consensus        81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            9999999999986 8888999999999999999999    78899999998777643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.43  E-value=1.7e-06  Score=71.31  Aligned_cols=116  Identities=22%  Similarity=0.320  Sum_probs=90.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-ccchHHH-------HHH-------------hhcHhHH-HHHHHHHHH
Q 024090            1 MWELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVI-------RAY-------------AVNKAWV-IGFLMDIFG   58 (272)
Q Consensus         1 ~~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~-~~~~~~~-------~~l-------------lr~p~W~-~G~~~~~~G   58 (272)
                      |.-.+..|+++|++.+.....-|-+-++..+. ..--|.+       .-.             -|+..++ .+-+..+.+
T Consensus         1 m~~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls   80 (140)
T COG2510           1 MMAAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS   80 (140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence            44567889999999999999999998865432 1100100       001             1112222 334777889


Q ss_pred             HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        59 ~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      +.+.+.|+..|+.|.|-|+=-+|++++..+|..++|||+|..+|+|+.+++.|.++++
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999999999999999987764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.37  E-value=3.7e-05  Score=70.79  Aligned_cols=66  Identities=15%  Similarity=0.239  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        50 ~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      .|+. ....+.++..++...+.+..|=+..+..+++.+++..++|||+++++|.++.+.+.|+....
T Consensus        71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            5555 57778899999999999999999999999999999999999999999999999999997653

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.32  E-value=0.00021  Score=63.53  Aligned_cols=192  Identities=20%  Similarity=0.200  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH-HHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccc
Q 024090           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS  128 (272)
Q Consensus        50 ~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa-~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~  128 (272)
                      .+......+..+...++...|.+..+++..++.+++.+++. .++|||+++++|.++.....|+.++..++..+....  
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~--  152 (292)
T COG0697          75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILS--  152 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHH--
Confidence            67777788888899999999999999999999999999997 777999999999999999999988875544432110  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhccCcc-cch-hh
Q 024090          129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGF-VFLEQGFP-TML-VP  205 (272)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~-~~~~~g~~-~l~-~~  205 (272)
                       ..-....+..+...+   ......++..+.   +   ......+     ..+.  ....-... ...+.+.. ... -.
T Consensus       153 -~~g~~~~l~a~~~~a---~~~~~~~~~~~~---~---~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  215 (292)
T COG0697         153 -LLGLLLALAAALLWA---LYTALVKRLSRL---G---PVTLALL-----LQLL--LALLLLLLFFLSGFGAPILSRAWL  215 (292)
T ss_pred             -HHHHHHHHHHHHHHH---HHHHHHHHhcCC---C---hHHHHHH-----HHHH--HHHHHHHHHHhccccccCCHHHHH
Confidence             011111122221111   111222221100   0   0111110     1111  11110000 11111111 111 11


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090          206 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  261 (272)
Q Consensus       206 ~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~  261 (272)
                      ...+..+..+..+++++.++++..+...... ....+|+.+..+++.++||+.+..
T Consensus       216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~l~~~e~~~~~  270 (292)
T COG0697         216 LLLYLGVFSTGLAYLLWYYALRLLGASLVAL-LSLLEPVFAALLGVLLLGEPLSPA  270 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHHHH-HHHHHHHHHHHHHHHHhCCCCcHH
Confidence            2222334444468899999999998554443 347899999999999999998653

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.10  E-value=0.00066  Score=64.46  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      +...+..+++..+.+..|=+-.++.+|+.+++..++|||++++++.++.+.+.|+.+..
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            34456699999999999999999999999999999999999999999999999998765

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.09  E-value=8.7e-05  Score=60.64  Aligned_cols=98  Identities=18%  Similarity=0.247  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHH
Q 024090            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLA   83 (272)
Q Consensus         5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~   83 (272)
                      .++=++|.++--.++...|.+....              +..+|+..+.++...+.+-..|++..|+++.+|+. ..+.+
T Consensus         4 wl~L~~Ai~~Ev~~t~~LK~s~g~~--------------~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v   69 (120)
T PRK10452          4 WILLALAIATEITGTLSMKWASVSE--------------GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGIL   69 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence            3444555666677888888763211              12346788999999999999999999999999996 69999


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        84 ~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      .+..++.+++||++|..++.|+.++..|++.+-
T Consensus        70 ~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         70 FITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999998874

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.97  E-value=0.0024  Score=58.04  Aligned_cols=204  Identities=21%  Similarity=0.187  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCC--C--CCC
Q 024090           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG--E--EQE  123 (272)
Q Consensus        48 W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~--~--~~~  123 (272)
                      +..=-.++.+.=.++..+++..|-+.-|=+--..+++|++++..++|||+++++|.++.+.+.|+.....++  +  .++
T Consensus        20 ~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~   99 (244)
T PF04142_consen   20 LAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSS   99 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccccc
Confidence            345567889999999999999999999999999999999999999999999999999999999998775211  1  111


Q ss_pred             CCc------cchhhHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 024090          124 PSS------ISIFQLPWLAFVVSILFVLLNGWL--RICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFL  195 (272)
Q Consensus       124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~  195 (272)
                      ..+      .................-.+.+..  ...++...      +-..|-+-+ ..-|+.+.+.....+......
T Consensus       100 ~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~------s~~~~N~qL-~~~gi~~~~~~~~~~~~~~~~  172 (244)
T PF04142_consen  100 SSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV------SLWIQNMQL-YLFGILFNLLALLLSDGSAIS  172 (244)
T ss_pred             ccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch------hHHHHHHHH-HHHHHHHHHHHHhcccccccc
Confidence            111      011111111111111111111111  12232221      123344444 344555566665555443333


Q ss_pred             ccCcccchhhHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024090          196 EQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS  260 (272)
Q Consensus       196 ~~g~~~l~~~~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~  260 (272)
                      ++|...-++++.+.....-+..|+.... -++.-+.. .=...+..+-++..++...+||+++..
T Consensus       173 ~~g~f~G~~~~~~~~i~~~a~gGllva~-v~KyadnI-~K~fa~a~siv~t~~~s~~lf~~~~s~  235 (244)
T PF04142_consen  173 ESGFFHGYSWWVWIVIFLQAIGGLLVAF-VLKYADNI-VKGFATAVSIVLTAVLSVLLFGFPPSL  235 (244)
T ss_pred             cCCchhhcchHHHHHHHHHHHhhHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            4455445666655443333334444332 34433311 111223455667778899999888654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.88  E-value=0.00012  Score=56.86  Aligned_cols=87  Identities=21%  Similarity=0.296  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhH-HHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHH
Q 024090            7 LTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAW-VIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAI   84 (272)
Q Consensus         7 lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W-~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~   84 (272)
                      +=+++.++...++...|+..               -.+++.| ...+..+..++.+-..|++..|++++.|+. ..+.+.
T Consensus         5 ~L~~a~~~ev~~~~~lK~s~---------------g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~   69 (93)
T PF00893_consen    5 FLLLAILFEVVGTIALKASH---------------GFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVG   69 (93)
T ss_dssp             HHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---------------hhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            33455667777888888742               1223333 455668899999999999999999999997 499999


Q ss_pred             HHHHHHHHhccccchhhHHHHHHH
Q 024090           85 LSIFSHFYLKEVMNAVDWMGITLA  108 (272)
Q Consensus        85 ~~~lsa~~l~~rl~~~ew~gv~l~  108 (272)
                      +.+.+..++||++|..+|.|+.++
T Consensus        70 ~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   70 VTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHhheeeC
Confidence            999999999999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.84  E-value=0.00037  Score=64.20  Aligned_cols=114  Identities=15%  Similarity=0.168  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch-----H---HHHHHh------hcH-h----HHHHHHHHHHHHHHHH
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-----K---VIRAYA------VNK-A----WVIGFLMDIFGALLML   63 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~-----~---~~~~ll------r~p-~----W~~G~~~~~~G~~~~~   63 (272)
                      ++.++++.+++|++..+++.||..++.+......     .   ......      .++ .    ...|+....+++.++.
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~  227 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEM  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999888765543221100     0   000111      111 1    3577888889999999


Q ss_pred             HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        64 ~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      .+++..|-+.+.++...+.+++.+++..+++|+++..+|+|.+++..|.+...
T Consensus       228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888765

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.83  E-value=0.0005  Score=55.29  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHh-HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHH
Q 024090            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKA-WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLA   83 (272)
Q Consensus         6 ~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~-W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~   83 (272)
                      ++=+++.+|--.++...|.+..               .+++. ++..+..+...+.+-..|++..|+++.+|+- ..+.+
T Consensus         5 l~L~~a~~~Ev~~~~~lK~s~g---------------f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v   69 (110)
T PRK09541          5 IYLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV   69 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC---------------CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence            4445667777778888887621               12333 4578889999999999999999999999995 58999


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        84 ~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      .+...+..++||++|..++.|+.++..|++.+-
T Consensus        70 ~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999874

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.71  E-value=0.006  Score=58.04  Aligned_cols=74  Identities=19%  Similarity=0.281  Sum_probs=65.3

Q ss_pred             hhcHhHH--HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           43 AVNKAWV--IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        43 lr~p~W~--~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      +|+|.|.  .=-.+|..|=-+...|+..-+++-+|=+-+.+.+++.++|..++|+|.+..++.|+.+++.|+.++.
T Consensus        75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~  150 (334)
T PF06027_consen   75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV  150 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence            4455554  4446788888889999999999999999999999999999999999999999999999999998764

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.67  E-value=0.00074  Score=60.11  Aligned_cols=111  Identities=16%  Similarity=0.164  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc--cc-hH--------HHHHHhh-------cHhH--H--HHHHHHHHHH
Q 024090            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS--FK-LK--------VIRAYAV-------NKAW--V--IGFLMDIFGA   59 (272)
Q Consensus         2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~--~~-~~--------~~~~llr-------~p~W--~--~G~~~~~~G~   59 (272)
                      +.++.++++++++++..++++|+..++.+...  .. .+        ....+..       +..|  .  .|......++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999876544221  00 00        0011111       1123  2  4555677899


Q ss_pred             HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 024090           60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT  112 (272)
Q Consensus        60 ~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl  112 (272)
                      .++..++...|.+.+..+...+.+++.+++..++||+++.++|.|..++..|+
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999998875

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.57  E-value=0.0006  Score=62.30  Aligned_cols=111  Identities=18%  Similarity=0.244  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCc-c----chHH--------HHHH--------hhcHhH----HHHHHHHHHH
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLS-F----KLKV--------IRAY--------AVNKAW----VIGFLMDIFG   58 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~----~~~~--------~~~l--------lr~p~W----~~G~~~~~~G   58 (272)
                      ++.+++++++|++..+++.|+..++.++.. .    ....        ....        ..++.|    ..+......+
T Consensus       145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~  224 (281)
T TIGR03340       145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA  224 (281)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999888754433211 0    0000        0000        001122    2455566788


Q ss_pred             HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 024090           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG  114 (272)
Q Consensus        59 ~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~  114 (272)
                      +.+...+++..|.+.+.+..-.+.+++.+++..++||+++..+|+|..++..|+.+
T Consensus       225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            89999999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.54  E-value=0.0017  Score=59.83  Aligned_cols=112  Identities=10%  Similarity=0.048  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----c-hHHHH-HHh-------hcH-hHH----HHHHHHHHHHHHHHH
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF----K-LKVIR-AYA-------VNK-AWV----IGFLMDIFGALLMLR   64 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~----~-~~~~~-~ll-------r~p-~W~----~G~~~~~~G~~~~~~   64 (272)
                      .+..+++.+++|++.+++++||-.++.+....    . .-... ...       -++ .|.    .| ...+.++.++..
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~~  234 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWNV  234 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            36789999999999999999997654332110    0 00000 000       111 221    33 346678889999


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (272)
Q Consensus        65 AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l  115 (272)
                      ++...|-+.+.+..-.+.+++.+++..+++|+++..+|+|.+++..|+.+.
T Consensus       235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999999999999999999999999987654

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.53  E-value=0.002  Score=51.63  Aligned_cols=70  Identities=19%  Similarity=0.318  Sum_probs=64.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090           46 KAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (272)
Q Consensus        46 p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl-~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l  115 (272)
                      .+.+..++.+...|.+...|+...|+++.+++ ...+-+.+...+..++|||+|..+++++.++..|++.+
T Consensus        31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            34556888999999999999999999999999 48899999999999999999999999999999999876

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.48  E-value=0.0023  Score=51.15  Aligned_cols=92  Identities=21%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcH-hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHH
Q 024090            9 LAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNK-AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS   86 (272)
Q Consensus         9 l~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p-~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~~~   86 (272)
                      ++|.++=-.++...|++..               .+++ ++..-+..+...|.+...|+...|+++..++- ..+.+.+.
T Consensus         7 ~~Ai~~Ev~~t~~Lk~s~g---------------f~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~   71 (105)
T PRK11431          7 VIAGLLEVVWAVGLKYTHG---------------FSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAA   71 (105)
T ss_pred             HHHHHHHHHHHHHHHhhhC---------------CccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHH
Confidence            3455555567777776411               1233 34567788889999999999999999999996 58999999


Q ss_pred             HHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090           87 IFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (272)
Q Consensus        87 ~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l  115 (272)
                      +.+.+++||++|..++.|+.++..|++.+
T Consensus        72 lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         72 ITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999876

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.48  E-value=0.0031  Score=50.74  Aligned_cols=97  Identities=14%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhH
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCG   81 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~-~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~   81 (272)
                      +...=++|.++--.++...|++.               -.++|.|. .-...+...|.+...|++..|+++..++- ..+
T Consensus         8 ~~~~L~~Ai~~Ev~~t~~Lk~s~---------------gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG   72 (109)
T PRK10650          8 HAAWLALAIVLEIVANIFLKFSD---------------GFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFG   72 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence            33444555566566777776651               12334433 45666777888899999999999999996 588


Q ss_pred             HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090           82 LAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (272)
Q Consensus        82 l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l  115 (272)
                      .+.+.+.+.+++||++|..+|.|+.++..|++.+
T Consensus        73 ~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         73 IAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998865

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.45  E-value=0.00035  Score=54.47  Aligned_cols=67  Identities=22%  Similarity=0.292  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (272)
Q Consensus        49 ~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l  115 (272)
                      ..|......++.+...++...|.+.+.++..++.+++.+++..++|||+++++|.|+.+++.|+.++
T Consensus        58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3566666888999999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.40  E-value=0.0046  Score=57.03  Aligned_cols=114  Identities=17%  Similarity=0.124  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-cc----hH-------HHHHHh-------------hcHh-HH----HHH
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FK----LK-------VIRAYA-------------VNKA-WV----IGF   52 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~~----~~-------~~~~ll-------------r~p~-W~----~G~   52 (272)
                      .++.+++++++|++..+++|||-.++.++.. ..    ..       ......             .++. |+    .|+
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i  222 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence            5889999999999999999999654322211 00    00       000000             1122 22    356


Q ss_pred             HHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        53 ~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      ...+.++.++..++...+-.-+.++...+.+++.+++..+++|+++..+|+|..+++.|+.+..
T Consensus       223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence            6678888899888887777788888888888999999999999999999999999999887654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.40  E-value=0.0038  Score=57.38  Aligned_cols=114  Identities=11%  Similarity=0.123  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch----H----HHHHH-----h---hc-HhHH----HHHHHHHHHHHH
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL----K----VIRAY-----A---VN-KAWV----IGFLMDIFGALL   61 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~----~----~~~~l-----l---r~-p~W~----~G~~~~~~G~~~   61 (272)
                      .+.++++++++|++..++.+||..++.+......    .    .....     .   -+ ..|.    .|+.....++.+
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999654322110000    0    00000     0   11 2233    466667788999


Q ss_pred             HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        62 ~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      +..++...|.+.+..+..++.+++.+++..++||+++..+|+|..++..|+.+..
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.39  E-value=0.059  Score=50.27  Aligned_cols=200  Identities=12%  Similarity=0.143  Sum_probs=103.6

Q ss_pred             HHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCch--hhh-hhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 024090           37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS--VIQ-PVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT  112 (272)
Q Consensus        37 ~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~pls--vVQ-Pl~-~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl  112 (272)
                      +.+.+..|||+=+....+...=...|..=+-.+|-.  +.+ .++ -++.++..+++..++|||+||-||+++.+..+|+
T Consensus        60 ~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV  139 (293)
T COG2962          60 RELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGV  139 (293)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            466678888876655555444444444444333332  111 111 3345588999999999999999999999999998


Q ss_pred             HhhccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024090          113 IGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLG-  191 (272)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~-  191 (272)
                      ....-...+          .+|.++..+....    .....|+.              +-.....|.+.=+.-.+--.. 
T Consensus       140 ~~~~~~~g~----------lpwval~la~sf~----~Ygl~RK~--------------~~v~a~~g~~lE~l~l~p~al~  191 (293)
T COG2962         140 LIQTWLLGS----------LPWVALALALSFG----LYGLLRKK--------------LKVDALTGLTLETLLLLPVALI  191 (293)
T ss_pred             HHHHHHcCC----------CcHHHHHHHHHHH----HHHHHHHh--------------cCCchHHhHHHHHHHHhHHHHH
Confidence            765322111          1233433332222    11122221              112223333322221111110 


Q ss_pred             -HhhhccCcc-----cchhhHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHH
Q 024090          192 -FVFLEQGFP-----TMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTAR  265 (272)
Q Consensus       192 -~~~~~~g~~-----~l~~~~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~~~~~  265 (272)
                       .-..+|...     ...+...+.+.-..+..-+.+...|-+.=| .+....+...||..=..+++.++||+++.+....
T Consensus       192 yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lp-ls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~  270 (293)
T COG2962         192 YLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLP-LSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVT  270 (293)
T ss_pred             HHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence             011111110     111111111222234445566665555555 3333446789999999999999999998765443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.31  E-value=0.083  Score=48.87  Aligned_cols=70  Identities=13%  Similarity=0.102  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        47 ~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      .|..=..++..+-.++-.||.+.|...-+=.=...++++.+++..++|+|.+++||.++.++++|++.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~  135 (303)
T PF08449_consen   66 KYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT  135 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence            4555567888888999999999999877777788999999999999999999999999999999998876

; GO: 0055085 transmembrane transport

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.25  E-value=0.0045  Score=59.25  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-c---------hHHHHHHhhc----HhHH-------HHHH----HHHH
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-K---------LKVIRAYAVN----KAWV-------IGFL----MDIF   57 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~---------~~~~~~llr~----p~W~-------~G~~----~~~~   57 (272)
                      ++..+++.+++|+++.+++|||-.++-|+... .         +-.+..+...    +.|+       ..+.    ....
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~l  268 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSV  268 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHH
Confidence            47889999999999999999998776544210 0         0001111111    1121       1122    2334


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      ++.++..+++..+-+.+-...-...+|+.+++..+++|+++..+++|.+++..|+.+..
T Consensus       269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            77888889988888888888888999999999999999999999999999999998764

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.82  E-value=0.24  Score=45.70  Aligned_cols=173  Identities=13%  Similarity=0.147  Sum_probs=88.0

Q ss_pred             HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHHHH
Q 024090           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSI  141 (272)
Q Consensus        62 ~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (272)
                      ...++...|+.+.-.+=   ..-.+.++.+-. |  +.+|...+++.+.|+.++.-.+++..+-++-+   ...++..+.
T Consensus        88 FY~si~riPlGiAVAiE---F~GPL~vA~~~s-R--r~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~G---v~~Al~AG~  158 (292)
T COG5006          88 FYLSIERIPLGIAVAIE---FTGPLAVALLSS-R--RLRDFVWVALAVLGIWLLLPLGQSVWSLDPVG---VALALGAGA  158 (292)
T ss_pred             HHHHHHhccchhhhhhh---hccHHHHHHHhc-c--chhhHHHHHHHHHHHHhheeccCCcCcCCHHH---HHHHHHHhH
Confidence            46788999999887773   222222222222 2  23565566777778777764444333222111   112233332


Q ss_pred             HHHHHHHHHHHhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcccchhhHHHHHHHHHHHH---
Q 024090          142 LFVLLNGWLRICKHQR-REQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGT---  217 (272)
Q Consensus       142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~~~~~v~~~~~---  217 (272)
                      ..+   ++....+|.. ..+      ..+    |++.|...+..-++-   .+..+ .-..+++|--+.....++++   
T Consensus       159 ~Wa---~YIv~G~r~g~~~~------g~~----g~a~gm~vAaviv~P---ig~~~-ag~~l~~p~ll~laLgvavlSSa  221 (292)
T COG5006         159 CWA---LYIVLGQRAGRAEH------GTA----GVAVGMLVAALIVLP---IGAAQ-AGPALFSPSLLPLALGVAVLSSA  221 (292)
T ss_pred             HHH---HHHHHcchhcccCC------Cch----HHHHHHHHHHHHHhh---hhhhh-cchhhcChHHHHHHHHHHHHhcc
Confidence            233   2222233322 111      112    333333322222211   01111 11234444333333334444   


Q ss_pred             -HHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090          218 -GFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  261 (272)
Q Consensus       218 -g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~  261 (272)
                       =+.+.|.|+++=|.-...+.| -.||..+...|..+|||++...
T Consensus       222 lPYsLEmiAL~rlp~~~F~~Ll-SLePa~aAl~G~i~L~e~ls~~  265 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLL-SLEPALAALSGLIFLGETLTLI  265 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHH-HhhHHHHHHHHHHHhcCCCCHH
Confidence             467999999998865555544 6899999999999999998654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.71  E-value=0.031  Score=49.58  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch-------HH--HHHHh---------hcHhHH--HHHHHHHHHHHH
Q 024090            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-------KV--IRAYA---------VNKAWV--IGFLMDIFGALL   61 (272)
Q Consensus         2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~-------~~--~~~ll---------r~p~W~--~G~~~~~~G~~~   61 (272)
                      +.++.++++++++++..++.+|+-. +.+......       ..  .....         ++...+  .|+...+.++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999865 222111010       00  00001         111111  445555567888


Q ss_pred             HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        62 ~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      ...++...|...+.++...+.+++..++..+++|+++.++|+|+.++..|.....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999998887664

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.61  E-value=0.038  Score=50.89  Aligned_cols=110  Identities=12%  Similarity=0.022  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCcc------chH-HHH--H--------HhhcHh-HHH----HHHHHHHHHHHHH
Q 024090            6 CLTLAATAGNNIGKVLQKKGTVILPPLSF------KLK-VIR--A--------YAVNKA-WVI----GFLMDIFGALLML   63 (272)
Q Consensus         6 ~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~------~~~-~~~--~--------llr~p~-W~~----G~~~~~~G~~~~~   63 (272)
                      .+.+.+++|++..++++||..++......      .+- ...  .        ...+|. |+.    +.....+++.+..
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~  231 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFT  231 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999997432111100      000 000  0        011222 111    1124457888999


Q ss_pred             HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (272)
Q Consensus        64 ~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l  115 (272)
                      .+++..|-+.+.++.-.+.+++.+++..+++|+++..++.|..++..++.++
T Consensus       232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~  283 (296)
T PRK15430        232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF  283 (296)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999997776554

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.59  E-value=0.18  Score=46.65  Aligned_cols=112  Identities=21%  Similarity=0.146  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----ch-----HH--HHHH-----hhcHhHH----HHHHHHHHHHHH
Q 024090            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF----KL-----KV--IRAY-----AVNKAWV----IGFLMDIFGALL   61 (272)
Q Consensus         2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~----~~-----~~--~~~l-----lr~p~W~----~G~~~~~~G~~~   61 (272)
                      +.++..+++++++|+.-...=|+..  .++.+.    ..     ..  ...+     ..+..++    .|+. -..++.+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence            4588999999999988877766542  222111    00     00  0111     0111222    5555 5788888


Q ss_pred             HHHHHh-hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhH----HHHHHHHHHHHhhc
Q 024090           62 MLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGVG  116 (272)
Q Consensus        62 ~~~AL~-~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew----~gv~l~~~Gl~~l~  116 (272)
                      ...++. ..+.+..-++...+.+.+...+.+++||+.+++|+    +|..++..|..+.+
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            889999 89999999999999999999999999999999999    99999988887653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=95.53  E-value=0.19  Score=46.29  Aligned_cols=114  Identities=15%  Similarity=0.167  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-cchH--------------HHHHHhhcHhHH-H----HHHHHHHHHHHH
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FKLK--------------VIRAYAVNKAWV-I----GFLMDIFGALLM   62 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~~~~--------------~~~~llr~p~W~-~----G~~~~~~G~~~~   62 (272)
                      .++.+|+.+..|.+.=-+.-||..+..+... ...+              +-..-+.+|.=+ .    |+.-..+=|.++
T Consensus       148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLE  227 (292)
T COG5006         148 VGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHH
Confidence            4778899999999888888888875433211 1111              111222333322 3    333344457789


Q ss_pred             HHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           63 LRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        63 ~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      .+||+-.|-..---+++++..+++..+..++||++|..||.++.+++.+.....
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~  281 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST  281 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999988776544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=94.95  E-value=0.3  Score=44.84  Aligned_cols=114  Identities=9%  Similarity=0.049  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCccch-----HH----HHHHh-h----------c--------HhHHHHH
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTV--ILPPLSFKL-----KV----IRAYA-V----------N--------KAWVIGF   52 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~--~~~~~~~~~-----~~----~~~ll-r----------~--------p~W~~G~   52 (272)
                      .+.+++++++++++..++++||-.+  +.+......     ..    ..... .          +        ..|..+.
T Consensus       145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (302)
T TIGR00817       145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSL  224 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHH
Confidence            5888999999999999999999765  322211100     00    00000 0          0        0121121


Q ss_pred             HHHHHHH----HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           53 LMDIFGA----LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        53 ~~~~~G~----~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      ......+    .++..+++..+-+...-......+++..++..+++|+++..++.|..++..|+....
T Consensus       225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence            1111111    233456666666666666777777999999999999999999999999999998765

specificities overlap.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=94.47  E-value=0.15  Score=47.53  Aligned_cols=111  Identities=18%  Similarity=0.191  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHH---------hhc--------HhHH--HHHHHHHHHHHHHHH
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAY---------AVN--------KAWV--IGFLMDIFGALLMLR   64 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~l---------lr~--------p~W~--~G~~~~~~G~~~~~~   64 (272)
                      +.++.-++ ..++...++-++.....|.+-...+.+.+.         -++        +.|+  -| .+-..|..++.-
T Consensus        39 gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg-~mG~tgvmlmyy  116 (346)
T KOG4510|consen   39 GLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRG-FMGFTGVMLMYY  116 (346)
T ss_pred             CceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeeh-hhhhhHHHHHHH
Confidence            34455566 777888888777766555332111221111         111        2233  22 233456677888


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        65 AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      |+...|++=..=+.-.+.+|+.+++..++|||.|+-|-++......|++++.
T Consensus       117 a~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  117 ALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             HHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            8888888766666777888999999999999999999999999999998776

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=93.79  E-value=5.6  Score=36.90  Aligned_cols=64  Identities=20%  Similarity=0.263  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHH----HHHHHHHHHHhhc
Q 024090           53 LMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVG  116 (272)
Q Consensus        53 ~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~~~~lsa~~l~~rl~~~ew~----gv~l~~~Gl~~l~  116 (272)
                      ++-..|..+|+.++...-+|..-|+. ...|+.+.+.+..++||.-+.++|+    ++.++++|..+-+
T Consensus        53 ~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   53 AFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            45567889999999999999999996 8899999999999999999998886    5556667776655

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=93.77  E-value=0.17  Score=47.33  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=82.1

Q ss_pred             HHHH-HHHHHHHHHHHhhhccCCCCccc--hHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHH
Q 024090            9 LAAT-AGNNIGKVLQKKGTVILPPLSFK--LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAIL   85 (272)
Q Consensus         9 l~aA-~~~a~g~vlQ~~aa~~~~~~~~~--~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~   85 (272)
                      .++= +|.++=.++..|+.++-...+.+  ......-++...++.=.++|+.|--++.+.|.+-.-|--|=+=..-+.|+
T Consensus        47 FlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFv  126 (372)
T KOG3912|consen   47 FLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFV  126 (372)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhh
Confidence            3344 67777778888876652221110  00000122333466678999999999999999999999999988899999


Q ss_pred             HHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           86 SIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        86 ~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      -++|..+++|+++.++|.|+..+..|++.++
T Consensus       127 glfst~~Ln~ti~~~qWl~i~fv~lGlviVg  157 (372)
T KOG3912|consen  127 GLFSTMFLNRTITGRQWLGILFVSLGLVIVG  157 (372)
T ss_pred             HHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence            9999999999999999999999999998876

>COG2510 Predicted membrane protein [Function unknown]

Probab=92.90  E-value=0.48  Score=39.47  Aligned_cols=56  Identities=29%  Similarity=0.313  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-hHHHHHh
Q 024090          212 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA-PTARFSL  268 (272)
Q Consensus       212 v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~-~~~~~~~  268 (272)
                      -..+..++++.=+|+|.|+...+.+ ..=..|+..+.+++++|||++... ..+..+.
T Consensus        74 Gla~glswl~Yf~ALk~G~as~VvP-ldk~svvl~~lls~lfL~E~ls~~~~iG~~LI  130 (140)
T COG2510          74 GLAGGLSWLLYFRALKKGKASRVVP-LDKTSVVLAVLLSILFLGERLSLPTWIGIVLI  130 (140)
T ss_pred             HHHHHHHHHHHHHHHhcCCcceEEE-cccccHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3457778899999999999554333 235679999999999999998654 4444443

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=91.43  E-value=1.4  Score=42.12  Aligned_cols=115  Identities=16%  Similarity=0.120  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----c--------hHH---HHHHhhcHhHHHHHHHHHHHHHH-HHHH
Q 024090            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF----K--------LKV---IRAYAVNKAWVIGFLMDIFGALL-MLRA   65 (272)
Q Consensus         2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~----~--------~~~---~~~llr~p~W~~G~~~~~~G~~~-~~~A   65 (272)
                      .++-++++.+|.+|++.+++||+-.++.++...    +        ...   -+.-+++-.|=.-.....+|+.+ ++.-
T Consensus       167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~  246 (334)
T PF06027_consen  167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF  246 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence            357789999999999999999999887653220    0        000   01112222333333444444443 4555


Q ss_pred             HhhcCchh-------hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           66 LSQAPVSV-------IQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        66 L~~~plsv-------VQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      +...|+.+       +.-=+-++-+.+++...++.|++++...++|.+++.+|+++..
T Consensus       247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~  304 (334)
T PF06027_consen  247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN  304 (334)
T ss_pred             HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence            55555433       3333456677889999999999999999999999999998875

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=90.48  E-value=5.2  Score=31.85  Aligned_cols=47  Identities=13%  Similarity=0.056  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090          214 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  261 (272)
Q Consensus       214 ~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~  261 (272)
                      .-...+++.+.++|.-|...+-+..+ ..++....+|..+|||+++..
T Consensus        46 ~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~   92 (111)
T PRK15051         46 CLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPR   92 (111)
T ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHH
Confidence            34557888888999988554444444 789999999999999999653

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=86.41  E-value=3  Score=33.66  Aligned_cols=100  Identities=23%  Similarity=0.329  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhhhcc---CCCCcc----chHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHH
Q 024090           14 GNNIGKVLQKKGTVI---LPPLSF----KLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAIL   85 (272)
Q Consensus        14 ~~a~g~vlQ~~aa~~---~~~~~~----~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~~   85 (272)
                      .-+..+-+-||+...   +.+.+.    -.+....++.+..++.=++++--|-.+...-|+-.|+++.-|+- +++..|+
T Consensus        14 lWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfaft   93 (125)
T KOG4831|consen   14 LWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFT   93 (125)
T ss_pred             HHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHH
Confidence            345555666777643   222211    23467788889999999999999999999999999999999996 7799999


Q ss_pred             HHHHHHHhccccc-hhhHHHHHHHHHHHHh
Q 024090           86 SIFSHFYLKEVMN-AVDWMGITLAGIGTIG  114 (272)
Q Consensus        86 ~~lsa~~l~~rl~-~~ew~gv~l~~~Gl~~  114 (272)
                      +..+-.+ +|+.. ++...|..+++.|+.+
T Consensus        94 a~~G~~L-GE~~~g~~a~lGt~liv~Gi~L  122 (125)
T KOG4831|consen   94 AIFGKAL-GEETQGGLALLGTSLIVFGIWL  122 (125)
T ss_pred             HHHHHHh-ccccccceeehhhhHHhhhhhh
Confidence            9888655 55555 4566788888888753

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=86.08  E-value=1.5  Score=33.64  Aligned_cols=47  Identities=28%  Similarity=0.201  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090          214 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  261 (272)
Q Consensus       214 ~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~  261 (272)
                      ....++.+++.++|..+...+.. ....+|+.+.+++..+++|+.+..
T Consensus        63 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~pv~~~i~~~~~~~e~~~~~  109 (126)
T PF00892_consen   63 GTALAYLLYFYALKYISASIVSI-LQYLSPVFAAILGWLFLGERPSWR  109 (126)
T ss_pred             ceehHHHHHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHHcCCCCCHH
Confidence            35778889999999988654444 346899999999999999998643

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=84.99  E-value=5.4  Score=31.29  Aligned_cols=46  Identities=20%  Similarity=0.159  Sum_probs=35.4

Q ss_pred             HHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCChH
Q 024090          216 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPT  263 (272)
Q Consensus       216 ~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~~~  263 (272)
                      ..++.++..|++..+. .+. .+...+|++..++|..+|+|+++...+
T Consensus        46 ~~~~~~~~~a~~~~~~-~v~-~i~~~~pi~~~ll~~~~~~er~~~~~~   91 (113)
T PF13536_consen   46 GVAYLLFFYALSYAPA-LVA-AIFSLSPIFTALLSWLFFKERLSPRRW   91 (113)
T ss_pred             HHHHHHHHHHHHhCcH-HHH-HHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            3667788888998884 333 345679999999999999999876543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=83.67  E-value=23  Score=33.61  Aligned_cols=37  Identities=11%  Similarity=0.247  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090           79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (272)
Q Consensus        79 ~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l  115 (272)
                      ...-++..+++..++||++|..+++|.+++..|+...
T Consensus       310 ~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        310 TLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence            3455588899999999999999999999999998764

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=83.12  E-value=22  Score=28.55  Aligned_cols=111  Identities=16%  Similarity=0.170  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccC----CCCc-c------c----------------hH---HHHHHhh-----c-Hh
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVIL----PPLS-F------K----------------LK---VIRAYAV-----N-KA   47 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~----~~~~-~------~----------------~~---~~~~llr-----~-p~   47 (272)
                      |..+++.+.++.+.=.+++|+.-++.    ...+ .      .                ++   ......+     + ..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            46788999999999999888877663    1110 0      0                00   0111111     2 22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---cCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 024090           48 WVIGFLMDIFGALLMLRALSQ---APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG  114 (272)
Q Consensus        48 W~~G~~~~~~G~~~~~~AL~~---~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~  114 (272)
                      |+.-+..-..++..|......   -+-..-+=+....-+++.+++..+++|++|..++.|+.++..|...
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            333333344455555444322   2222233335667788899999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00803 nst UDP-galactose transporter

Probab=82.35  E-value=6.9  Score=34.22  Aligned_cols=111  Identities=14%  Similarity=0.066  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCc----cch------HHHHHH--------------hh-cHhHHHHHHHHHH
Q 024090            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS----FKL------KVIRAY--------------AV-NKAWVIGFLMDIF   57 (272)
Q Consensus         3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~----~~~------~~~~~l--------------lr-~p~W~~G~~~~~~   57 (272)
                      .++...+.+..+.+...+.|++.-++.+..-    ...      ......              .+ ++..|.-......
T Consensus        85 ~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  164 (222)
T TIGR00803        85 VGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNVG  164 (222)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHHh
Confidence            3445556666777899999999865422110    000      000000              00 1223333344445


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 024090           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI  113 (272)
Q Consensus        58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~  113 (272)
                      |..+-...+...+-...-=....+.+++.++|.++++++++...|.|+.++..|+.
T Consensus       165 ~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       165 GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            54554455555555566666788999999999999999999999999999887653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=80.68  E-value=4.7  Score=39.25  Aligned_cols=71  Identities=15%  Similarity=0.132  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHH---HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCC
Q 024090           49 VIGFLMDIFGALLML---RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (272)
Q Consensus        49 ~~G~~~~~~G~~~~~---~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~  119 (272)
                      -.++.+-.+-|..|.   .||++-.++-..=+-.+|=.||+.++..+-.||+|..+.+++.+...|++.+.-++
T Consensus       160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~  233 (416)
T KOG2765|consen  160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGD  233 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecc
Confidence            345555555666654   46777777666666788899999999999999999999999999999998886443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.01
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.78
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	95.69
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	95.08

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.01  E-value=4.8e-09  Score=82.85  Aligned_cols=101  Identities=17%  Similarity=0.188  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL   82 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl-~~~~l   82 (272)
                      ..++-+++.++...++.+.|++..              .-|.++++.+......++.+...|++..|++.+.|+ ...+.
T Consensus         3 ~~l~l~~a~~~e~~~~~~lK~s~~--------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~   68 (110)
T 3b5d_A            3 PYIYLGGAILAEVIGTTLMKFSEG--------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI   68 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC--------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence            456677888999999999999621              113466788999999999999999999999999999 69999


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccC
Q 024090           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (272)
Q Consensus        83 ~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~  118 (272)
                      +++.+++..++||++|..+|.|+.+++.|++.+...
T Consensus        69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999988643

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.78  E-value=1.4e-08  Score=83.50  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 024090            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL   82 (272)
Q Consensus         4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl-~~~~l   82 (272)
                      +.++-+++.++...++.+.|++.      +        .-+.++++.|+...++++.+...|++..|++.+.|+ ..++.
T Consensus         3 ~~l~Ll~ail~ev~~~~~lK~s~------g--------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~p   68 (137)
T 2i68_A            3 PYIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI   68 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc------c--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence            34566778888899999999862      1        113456779999999999999999999999999999 79999


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (272)
Q Consensus        83 ~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~  116 (272)
                      +++.+++..+++|+++..+|+|+.+++.|++++.
T Consensus        69 v~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~  102 (137)
T 2i68_A           69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (137)
T ss_dssp             HHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998875

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=95.69  E-value=0.045  Score=44.40  Aligned_cols=60  Identities=17%  Similarity=0.088  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ChHHHHHhh
Q 024090          210 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS-APTARFSLL  269 (272)
Q Consensus       210 ~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~-~~~~~~~~~  269 (272)
                      ..++....++++++.+++..+...+-+..+...|+...++|+.+|||++.. ...+..+..
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi   95 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLIC   95 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            335567788999999999999654444335689999999999999999954 455555444

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=95.08  E-value=0.19  Score=38.81  Aligned_cols=51  Identities=18%  Similarity=0.111  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024090          210 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS  260 (272)
Q Consensus       210 ~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~  260 (272)
                      ..+.....++++.+.++|..|...+-+..+-..|+...++|+.+|||+++.
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~   85 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL   85 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH
Confidence            334566778899999999999654444335678999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00