Citrus Sinensis ID: 024105

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
MAERGGERGAFGRGFGRGGRGDRGGPRGRRRAGRREEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVITEVDQAEP
ccccccccccccccccccccccccccccccccccccccccEEEccccccHHcccccccHHHHHHccccccHHHHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEcEEEEEEccEEEcccccccccEEEEcccHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHccccccccEEEccccccc
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHcccccHHHHHHHHccccHHHHHHEcccHHHcccccccEEEEEEEEEEcccccEccccccHHHHHHHHHHHHHHHHHcEcEEccccccccccccccccEEEcccccEEEEEEEEcccccEEEEccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHcccccEEEEcccccccc
maerggergafgrgfgrggrgdrggprgrrragrreeeekwvpvtklgRLVREGKIRSLEQIYLhslpikeyQIIDTLIGHKLKDEVMKimpvqkqtragqrtRFKAFVVVgdtdghvglgvkCSKEVATAIRGAIILAKLSvipvrrgywgnkigrphtvpckvtgkcgsvtvrmvpaprgagivaarvpkkvlqfagiddvftssrgstktlGNFVKATFECLLKTygfltpdfwretrfvkspyqeytdlltpkpinkavitevdqaep
maerggergafgrgfgrggrgdrggprgrrragrreeeekwvpvtklgrlvregkIRSLEQIYlhslpikeyQIIDTLIGHKLKDEVMKIMPvqkqtragqrtRFKAFVVVgdtdghvglgvKCSKEVATAIRGAiilaklsvipVRRGYWgnkigrphtvpckvtgkcGSVTVRMVPAPRGAGIVAARVPKKVLQFAGiddvftssrgstktlgNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQeytdlltpkpinkavitevdqaep
MAerggergafgrgfgrggrgdrggprgrrragrreeeeKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVITEVDQAEP
****************************************WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVI********
*****************************************VPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPI*************
********GAFGRGFGRG*********************KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVITEVDQAEP
***************************************KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVITE******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
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MAERGGERGAFGRGFGRGGRGDRGGPRGRRRAGRREEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVITEVDQAEP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query272 2.2.26 [Sep-21-2011]
Q9SCM3276 40S ribosomal protein S2- yes no 0.860 0.847 0.850 1e-114
Q93VB8284 40S ribosomal protein S2- no no 0.863 0.827 0.852 1e-114
Q8L8Y0284 40S ribosomal protein S2- no no 0.863 0.827 0.852 1e-114
P49688285 40S ribosomal protein S2- no no 0.834 0.796 0.863 1e-113
Q90YS3277 40S ribosomal protein S2 N/A no 0.849 0.833 0.745 1e-100
P31009267 40S ribosomal protein S2 yes no 0.823 0.838 0.737 1e-98
P27952293 40S ribosomal protein S2 no no 0.808 0.750 0.75 5e-98
P25444293 40S ribosomal protein S2 yes no 0.808 0.750 0.75 5e-98
P15880293 40S ribosomal protein S2 yes no 0.808 0.750 0.75 7e-98
O18789293 40S ribosomal protein S2 yes no 0.808 0.750 0.75 1e-97
>sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1 Back     alignment and function desciption
 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/234 (85%), Positives = 216/234 (92%)

Query: 37  EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQ 96
           EEEKWVPVTKLGRLV+EGKI  +EQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQ
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100

Query: 97  TRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIG 156
           TRAGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160

Query: 157 RPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 216
           +PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220

Query: 217 FVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVITEVDQA 270
           FVKATF+CL KTYGFLTP+FW+ETRF KSPYQE+TD L   P  K     VD++
Sbjct: 221 FVKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVKISEVVVDKS 274

Arabidopsis thaliana (taxid: 3702)
>sp|Q93VB8|RS22_ARATH 40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1 Back     alignment and function description
>sp|Q8L8Y0|RS21_ARATH 40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2 Back     alignment and function description
>sp|P49688|RS23_ARATH 40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2 Back     alignment and function description
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1 Back     alignment and function description
>sp|P31009|RS2_DROME 40S ribosomal protein S2 OS=Drosophila melanogaster GN=RpS2 PE=1 SV=2 Back     alignment and function description
>sp|P27952|RS2_RAT 40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1 Back     alignment and function description
>sp|P25444|RS2_MOUSE 40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3 Back     alignment and function description
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2 Back     alignment and function description
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
357521321279 40S ribosomal protein S2 [Medicago trunc 0.863 0.842 0.894 1e-119
224090212270 predicted protein [Populus trichocarpa] 0.860 0.866 0.889 1e-118
356513050272 PREDICTED: 40S ribosomal protein S2-4-li 0.860 0.860 0.897 1e-118
224138034276 predicted protein [Populus trichocarpa] 0.860 0.847 0.889 1e-117
388501250279 unknown [Medicago truncatula] 0.863 0.842 0.885 1e-117
224054986270 predicted protein [Populus trichocarpa] 0.863 0.870 0.881 1e-117
449503788271 PREDICTED: 40S ribosomal protein S2-4-li 0.845 0.848 0.900 1e-116
356539553275 PREDICTED: 40S ribosomal protein S2-4-li 0.863 0.854 0.877 1e-116
356539516275 PREDICTED: 40S ribosomal protein S2-4-li 0.863 0.854 0.877 1e-116
449437966294 PREDICTED: 40S ribosomal protein S2-3-li 0.845 0.782 0.891 1e-116
>gi|357521321|ref|XP_003630949.1| 40S ribosomal protein S2 [Medicago truncatula] gi|355524971|gb|AET05425.1| 40S ribosomal protein S2 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/236 (89%), Positives = 225/236 (95%), Gaps = 1/236 (0%)

Query: 36  EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQK 95
           EEEEKWVPVTKLGRLV+EGKIRSLEQIYLHSLPIKE+QIIDTL+G  LKDEVMKIMPVQK
Sbjct: 44  EEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK 103

Query: 96  QTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKI 155
           QTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKI
Sbjct: 104 QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKI 163

Query: 156 GRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 215
           G+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG
Sbjct: 164 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 223

Query: 216 NFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVITEVDQAE 271
           NFVKATF+CL+KTYGFLTP+FW+ETRF KSP+QEYTDLL  KP  KA+I E ++ E
Sbjct: 224 NFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLA-KPTAKALILEEERVE 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224090212|ref|XP_002308954.1| predicted protein [Populus trichocarpa] gi|118485149|gb|ABK94437.1| unknown [Populus trichocarpa] gi|222854930|gb|EEE92477.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356513050|ref|XP_003525227.1| PREDICTED: 40S ribosomal protein S2-4-like [Glycine max] Back     alignment and taxonomy information
>gi|224138034|ref|XP_002322713.1| predicted protein [Populus trichocarpa] gi|222867343|gb|EEF04474.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388501250|gb|AFK38691.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224054986|ref|XP_002298397.1| predicted protein [Populus trichocarpa] gi|222845655|gb|EEE83202.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449503788|ref|XP_004162177.1| PREDICTED: 40S ribosomal protein S2-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356539553|ref|XP_003538262.1| PREDICTED: 40S ribosomal protein S2-4-like [Glycine max] Back     alignment and taxonomy information
>gi|356539516|ref|XP_003538244.1| PREDICTED: 40S ribosomal protein S2-4-like [Glycine max] Back     alignment and taxonomy information
>gi|449437966|ref|XP_004136761.1| PREDICTED: 40S ribosomal protein S2-3-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
TAIR|locus:2016585284 XW6 [Arabidopsis thaliana (tax 0.849 0.813 0.858 1.6e-104
TAIR|locus:504956181284 AT1G58684 [Arabidopsis thalian 0.849 0.813 0.858 1.6e-104
TAIR|locus:2826988284 AT1G58983 [Arabidopsis thalian 0.849 0.813 0.858 1.6e-104
TAIR|locus:2826968284 AT1G59359 [Arabidopsis thalian 0.849 0.813 0.858 1.6e-104
TAIR|locus:2103539276 AT3G57490 [Arabidopsis thalian 0.849 0.836 0.848 1.6e-104
TAIR|locus:2054406285 AT2G41840 [Arabidopsis thalian 0.849 0.810 0.845 3.7e-103
FB|FBgn0004867267 RpS2 "Ribosomal protein S2" [D 0.805 0.820 0.75 8.3e-90
ZFIN|ZDB-GENE-040426-2454280 rps2 "ribosomal protein S2" [D 0.790 0.767 0.772 1.1e-89
UNIPROTKB|E1C4M0286 E1C4M0 "Uncharacterized protei 0.790 0.751 0.762 2.8e-89
UNIPROTKB|E2QWY6293 LOC608162 "Uncharacterized pro 0.790 0.733 0.762 3.6e-89
TAIR|locus:2016585 XW6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 200/233 (85%), Positives = 215/233 (92%)

Query:    40 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRA 99
             KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRA
Sbjct:    52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRA 111

Query:   100 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPH 159
             GQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PH
Sbjct:   112 GQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPH 171

Query:   160 TVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 219
             TVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK
Sbjct:   172 TVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231

Query:   220 ATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKA-VITE-VDQA 270
             ATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L+ K ++   VITE  DQA
Sbjct:   232 ATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITEGEDQA 284
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0015935 "small ribosomal subunit" evidence=IEA
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:504956181 AT1G58684 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826988 AT1G58983 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826968 AT1G59359 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103539 AT3G57490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054406 AT2G41840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0004867 RpS2 "Ribosomal protein S2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2454 rps2 "ribosomal protein S2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4M0 E1C4M0 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWY6 LOC608162 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q90YS3RS2_ICTPUNo assigned EC number0.74560.84920.8339N/Ano
Q8L8Y0RS21_ARATHNo assigned EC number0.85230.86390.8274nono
O18789RS2_BOVINNo assigned EC number0.750.80880.7508yesno
O74892RS2_SCHPONo assigned EC number0.70270.81250.8735yesno
P25444RS2_MOUSENo assigned EC number0.750.80880.7508yesno
P25443RS2_YEASTNo assigned EC number0.65270.79040.8464yesno
P27685RS2_DICDINo assigned EC number0.69720.89700.9207yesno
P49154RS2_URECANo assigned EC number0.75450.80880.7913N/Ano
P15880RS2_HUMANNo assigned EC number0.750.80880.7508yesno
Q9SCM3RS24_ARATHNo assigned EC number0.85040.86020.8478yesno
P31009RS2_DROMENo assigned EC number0.73770.82350.8389yesno
O43992RS2_LEIAMNo assigned EC number0.66660.80140.8226N/Ano
Q93VB8RS22_ARATHNo assigned EC number0.85230.86390.8274nono
P51403RS2_CAEELNo assigned EC number0.70310.80140.8014yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
PTZ00070257 PTZ00070, PTZ00070, 40S ribosomal protein S2; Prov 1e-161
TIGR01020212 TIGR01020, rpsE_arch, ribosomal protein S5(archaea 1e-106
PRK04044211 PRK04044, rps5p, 30S ribosomal protein S5P; Review 6e-87
COG0098181 COG0098, RpsE, Ribosomal protein S5 [Translation, 2e-56
pfam0033367 pfam00333, Ribosomal_S5, Ribosomal protein S5, N-t 7e-28
PRK00550168 PRK00550, rpsE, 30S ribosomal protein S5; Validate 2e-23
pfam0371974 pfam03719, Ribosomal_S5_C, Ribosomal protein S5, C 4e-23
TIGR01021154 TIGR01021, rpsE_bact, ribosomal protein S5, bacter 3e-21
CHL00138143 CHL00138, rps5, ribosomal protein S5; Validated 3e-11
>gnl|CDD|240255 PTZ00070, PTZ00070, 40S ribosomal protein S2; Provisional Back     alignment and domain information 
 Score =  447 bits (1153), Expect = e-161
 Identities = 182/252 (72%), Positives = 207/252 (82%), Gaps = 2/252 (0%)

Query: 7   ERGAFGRGFGRGGRGDRGGPRGRRRAGRREEEEKWVPVTKLGRLVREGKIRSLEQIYLHS 66
            RG  GRGFGR GRG RG  RGR R G   EE++WVPVTKLGRLV+ GKI SLE+I+L S
Sbjct: 4   ARGGEGRGFGRRGRGGRGRGRGRGR-GGEGEEKEWVPVTKLGRLVKAGKITSLEEIFLFS 62

Query: 67  LPIKEYQIIDTLI-GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCS 125
           +PIKEYQI+D      KLKDEVMKIMPVQKQT AGQRTRFKAFVVVGD +GH+GLG K +
Sbjct: 63  IPIKEYQIVDHFFAESKLKDEVMKIMPVQKQTSAGQRTRFKAFVVVGDGNGHIGLGAKVA 122

Query: 126 KEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGI 185
           KEVATAIRGAII AKL+++PVRRGYWGNKIG PHTVP KVTGKCGSV VR+VPAPRG GI
Sbjct: 123 KEVATAIRGAIIAAKLNLVPVRRGYWGNKIGEPHTVPMKVTGKCGSVRVRLVPAPRGTGI 182

Query: 186 VAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKS 245
           VAA  PKK+L+FAG++DVFTSSRG T+T GNF+KATF  L KTYGFLTPD W+ET   +S
Sbjct: 183 VAAPTPKKILEFAGVEDVFTSSRGKTRTRGNFLKATFYALRKTYGFLTPDLWKETELSRS 242

Query: 246 PYQEYTDLLTPK 257
           PY E+++ L  K
Sbjct: 243 PYDEHSEFLAEK 254

Length = 257
>gnl|CDD|233235 TIGR01020, rpsE_arch, ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) Back     alignment and domain information
>gnl|CDD|235213 PRK04044, rps5p, 30S ribosomal protein S5P; Reviewed Back     alignment and domain information
>gnl|CDD|223176 COG0098, RpsE, Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|144065 pfam00333, Ribosomal_S5, Ribosomal protein S5, N-terminal domain Back     alignment and domain information
>gnl|CDD|234790 PRK00550, rpsE, 30S ribosomal protein S5; Validated Back     alignment and domain information
>gnl|CDD|190724 pfam03719, Ribosomal_S5_C, Ribosomal protein S5, C-terminal domain Back     alignment and domain information
>gnl|CDD|130093 TIGR01021, rpsE_bact, ribosomal protein S5, bacterial/organelle type Back     alignment and domain information
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 272
PTZ00070257 40S ribosomal protein S2; Provisional 100.0
KOG0877213 consensus 40S ribosomal protein S2/30S ribosomal p 100.0
TIGR01020212 rpsE_arch ribosomal protein S5(archaeal type)/S2(e 100.0
PRK04044211 rps5p 30S ribosomal protein S5P; Reviewed 100.0
COG0098181 RpsE Ribosomal protein S5 [Translation, ribosomal 100.0
TIGR01021154 rpsE_bact ribosomal protein S5, bacterial/organell 100.0
PRK00550168 rpsE 30S ribosomal protein S5; Validated 100.0
CHL00138143 rps5 ribosomal protein S5; Validated 100.0
KOG2646396 consensus Ribosomal protein S5 [Translation, ribos 99.93
PF0371974 Ribosomal_S5_C: Ribosomal protein S5, C-terminal d 99.9
PF0033367 Ribosomal_S5: Ribosomal protein S5, N-terminal dom 99.89
>PTZ00070 40S ribosomal protein S2; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-101  Score=699.09  Aligned_cols=253  Identities=72%  Similarity=1.191  Sum_probs=235.7

Q ss_pred             CCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeeccCCchhhhcCCcCCHHHHHhcCCCCCchhhhhhhcC
Q 024105            1 MAERGGERGAFGRGFGRGGRGDRGGPRGRRRAGRREEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG   80 (272)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~tklG~lVk~~kiksleei~~~slpIkE~eIiD~~lg   80 (272)
                      |.+++++++|||++ +||+||++   |++.+++ ++|+++|+|+|+||||||||||+||||||+|||||||+||||+||+
T Consensus         2 ~~~~~~~~~~~g~~-~~~~~g~~---~~~~~~~-~~~~~~W~P~TklGrlVk~gki~s~eei~~~~lpikE~eIvd~ll~   76 (257)
T PTZ00070          2 AAARGGEGRGFGRR-GRGGRGRG---RGRGRGG-EGEEKEWVPVTKLGRLVKAGKITSLEEIFLFSIPIKEYQIVDHFFA   76 (257)
T ss_pred             CcccCCcccCCCCC-CCCCCCCC---CCCCCCC-ccccCceeeccchhhhhhcCccccHHHHHhcCCCccchhhHHHHcc
Confidence            45778888889753 33334433   2212333 5789999999999999999999999999999999999999999996


Q ss_pred             -CCcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCcccCcCCCCc
Q 024105           81 -HKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPH  159 (272)
Q Consensus        81 -~~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~g~~h  159 (272)
                       ++|+|+||+|++|||||++||++||+|||||||+|||||||++||+||++||++|+++||+||+||+||||+|+|+++|
T Consensus        77 ~~~L~eeVl~I~rVqK~TkgGrr~rF~AlVVVGd~nG~VGlG~gKakEV~~AIrKAi~~AK~nii~V~rgyW~~~~g~~h  156 (257)
T PTZ00070         77 ESKLKDEVMKIMPVQKQTSAGQRTRFKAFVVVGDGNGHIGLGAKVAKEVATAIRGAIIAAKLNLVPVRRGYWGNKIGEPH  156 (257)
T ss_pred             CccchheEEEEeeeEEEecCCcEEEEEEEEEEeCCCCcEecceeechhHHHHHHHHHHHHHhCeEEEecccccccCCCCC
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhh
Q 024105          160 TVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRE  239 (272)
Q Consensus       160 TIp~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~  239 (272)
                      ||||+|+|||||++|.|+|||+|+||+|++++++||+||||+|||++++|||+|++||+||||+||++||+|+|||+|++
T Consensus       157 TIp~~V~GK~GSv~V~L~PAP~GtGivAg~~vk~VLelAGIkDv~tks~GsTrt~~N~aKATf~AL~~t~~~~tp~~w~~  236 (257)
T PTZ00070        157 TVPMKVTGKCGSVRVRLVPAPRGTGIVAAPTPKKILEFAGVEDVFTSSRGKTRTRGNFLKATFYALRKTYGFLTPDLWKE  236 (257)
T ss_pred             CeeeeEEEEeCeEEEEEEeCCCCccEEeCcHHHHHHHHcCccceeeecccCCCChHHHHHHHHHHHHHHhcccCHhHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCChhhhhhcccCCc
Q 024105          240 TRFVKSPYQEYTDLLTPKP  258 (272)
Q Consensus       240 ~~~~~~p~~~~~d~l~~~~  258 (272)
                      +.|+++|||||+|||.+..
T Consensus       237 ~~~~~~p~~~~~~~l~~~~  255 (257)
T PTZ00070        237 TELSRSPYDEHSEFLAEKK  255 (257)
T ss_pred             cccCCCchHHHHHHHhhhc
Confidence            9999999999999997654

>KOG0877 consensus 40S ribosomal protein S2/30S ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01020 rpsE_arch ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) Back     alignment and domain information
>PRK04044 rps5p 30S ribosomal protein S5P; Reviewed Back     alignment and domain information
>COG0098 RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type Back     alignment and domain information
>PRK00550 rpsE 30S ribosomal protein S5; Validated Back     alignment and domain information
>CHL00138 rps5 ribosomal protein S5; Validated Back     alignment and domain information
>KOG2646 consensus Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03719 Ribosomal_S5_C: Ribosomal protein S5, C-terminal domain; InterPro: IPR005324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
3iz6_E274 Localization Of The Small Subunit Ribosomal Protein 1e-110
3zey_P266 High-resolution Cryo-electron Microscopy Structure 2e-82
3izb_E254 Localization Of The Small Subunit Ribosomal Protein 3e-80
2zkq_e179 Structure Of A Mammalian Ribosomal 40s Subunit With 6e-80
2xzm_E296 Crystal Structure Of The Eukaryotic 40s Ribosomal S 8e-75
3jyv_E162 Structure Of The 40s Rrna And Proteins And PE TRNA 1e-60
1s1h_E149 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 8e-56
3j20_F236 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-40
1pkp_A150 The Structure Of Ribosomal Protein S5 Reveals Sites 4e-18
1qd7_D145 Partial Model For 30s Ribosomal Subunit Length = 14 4e-18
1eg0_B148 Fitting Of Components With Known Structure Into An 4e-18
3bbn_E308 Homology Model For The Spinach Chloroplast 30s Subu 2e-13
3ohc_E160 Structure Of The Thermus Thermophilus Ribosome Comp 4e-13
1i94_E161 Crystal Structures Of The Small Ribosomal Subunit W 4e-13
1fka_E162 Structure Of Functionally Activated Small Ribosomal 5e-13
3fic_E151 T. Thermophilus 70s Ribosome In Complex With Mrna, 5e-13
1pns_E150 Crystal Structure Of A Streptomycin Dependent Ribos 5e-13
1p6g_E166 Real Space Refined Coordinates Of The 30s Subunit F 1e-10
3e1a_S159 Structure Of The 30s Subunit And The Trnas Of E. Co 1e-10
3fih_E150 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 1e-10
1vs5_E167 Crystal Structure Of The Bacterial Ribosome From Es 1e-10
2gy9_E148 Structure Of The 30s Subunit Of A Pre-Translocation 1e-10
>pdb|3IZ6|E Chain E, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 274 Back     alignment and structure 
Iteration: 1

 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/225 (84%), Positives = 211/225 (93%), Gaps = 2/225 (0%)
Query: 40  KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRA 99
           KWVPVTKLGRLV+EG+   +E+IYLHSLP+KE+QI++TL+   LKDEVMKI PVQKQTRA
Sbjct: 43  KWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRA 101
Query: 100 GQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPH 159
           GQRTRFKAFVVVGD +GHVGLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PH
Sbjct: 102 GQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPH 161
Query: 160 TVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 219
           TVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVK
Sbjct: 162 TVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 221
Query: 220 ATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVI 264
           ATF+CL+KTYGFLTPDFWR+T+FVKSP+QEYTDLL  KP    +I
Sbjct: 222 ATFDCLMKTYGFLTPDFWRDTKFVKSPFQEYTDLLA-KPTKALMI 265
>pdb|3ZEY|P Chain P, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 266 Back     alignment and structure
>pdb|3IZB|E Chain E, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 254 Back     alignment and structure
>pdb|2ZKQ|EE Chain e, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 179 Back     alignment and structure
>pdb|2XZM|E Chain E, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 296 Back     alignment and structure
>pdb|3JYV|E Chain E, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 162 Back     alignment and structure
>pdb|1S1H|E Chain E, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 149 Back     alignment and structure
>pdb|3J20|F Chain F, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 236 Back     alignment and structure
>pdb|1PKP|A Chain A, The Structure Of Ribosomal Protein S5 Reveals Sites Of Interaction With 16s Rrna Length = 150 Back     alignment and structure
>pdb|1QD7|D Chain D, Partial Model For 30s Ribosomal Subunit Length = 145 Back     alignment and structure
>pdb|3BBN|E Chain E, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 308 Back     alignment and structure
>pdb|3OHC|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 160 Back     alignment and structure
>pdb|1I94|E Chain E, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 161 Back     alignment and structure
>pdb|1FKA|E Chain E, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 162 Back     alignment and structure
>pdb|3FIC|E Chain E, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 151 Back     alignment and structure
>pdb|1PNS|E Chain E, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 150 Back     alignment and structure
>pdb|1P6G|E Chain E, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 166 Back     alignment and structure
>pdb|3E1A|S Chain S, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Pre- Accommodation State Length = 159 Back     alignment and structure
>pdb|3FIH|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150 Back     alignment and structure
>pdb|1VS5|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 167 Back     alignment and structure
>pdb|2GY9|E Chain E, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 148 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
3u5c_C254 Guanine nucleotide-binding protein subunit beta-L 100.0
3iz6_E274 40S ribosomal protein S2 (S5P); eukaryotic ribosom 100.0
2xzm_E296 Ribosomal protein S5 containing protein; ribosome, 100.0
3j20_F236 30S ribosomal protein S5P; archaea, archaeal, KINK 100.0
3bbn_E308 Ribosomal protein S5; small ribosomal subunit, spi 100.0
3r8n_E150 30S ribosomal protein S5; protein biosynthesis, RN 100.0
3i1m_E167 30S ribosomal protein S5; ribosome structure, prot 100.0
2vqe_E162 30S ribosomal protein S5; tRNA-binding, rRNA-bindi 100.0
1pkp_A150 Ribosomal protein S5; 2.80A {Geobacillus stearothe 100.0
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E Back     alignment and structure
Probab=100.00  E-value=7.3e-105  Score=723.63  Aligned_cols=247  Identities=61%  Similarity=1.019  Sum_probs=215.0

Q ss_pred             CCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeeccCCchhhhcCCcCCHHHHHhcCCCCCchhhhhhhcC
Q 024105            1 MAERGGERGAFGRGFGRGGRGDRGGPRGRRRAGRREEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG   80 (272)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~tklG~lVk~~kiksleei~~~slpIkE~eIiD~~lg   80 (272)
                      |+|++.++++||+++    ||+    || +++++++|++||+|+|||||||||||||||||||+|||||||+||||||| 
T Consensus         4 ~~~~~~~~~~~~~~~----~~~----~~-~~~~~~~~~~~W~P~TklG~lVk~~kiksleei~~~slpikE~eiiD~~l-   73 (254)
T 3u5c_C            4 PEAQQQKRGGFGGRN----RGR----PN-RRGPRNTEEKGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLL-   73 (254)
T ss_dssp             ---------------------------------------CCCCCSHHHHHHHTTCCCCHHHHHHTTCCCCCHHHHHHHC-
T ss_pred             hhccchhccccCCCC----CCC----Cc-CCCcccccccceeecccccchhhcCccccHHHHHHcCCCccchHHHHHHH-
Confidence            677766688887432    221    11 34555789999999999999999999999999999999999999999999 


Q ss_pred             CCcceeEEEEeeEEEeccCCeeeEEEEEEEeCCCCCceecccccchhHHHHHHHHHHHHHhCceEEecCcccCcCCCCce
Q 024105           81 HKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHT  160 (272)
Q Consensus        81 ~~lk~eVl~i~~Vqk~Tk~Grr~rFkAlVvVGd~nG~VGlGvgkakev~~AI~kAi~~Ak~niipV~rgyw~~~~g~~hT  160 (272)
                      ++|+|+||+|++|||||++||++||+|||||||+|||||||++||+||++||++|+++||+||+||+||||||+||++||
T Consensus        74 ~~Lke~Vl~I~rVqK~tkgGrr~rF~AlVVVGD~nG~VGlG~gkakEV~~AIrkAi~~Ak~nlipV~rgyWg~~~g~~hT  153 (254)
T 3u5c_C           74 PGLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHS  153 (254)
T ss_dssp             CCCBCCEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHTCEECCEECSSSCCSSCCE
T ss_pred             HhhhhhEEEEeeeEEEecCCcEEEEEEEEEecCCCCceeecccccchHHHHHHHHHHHHHhCeEEeccccccccCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHhhh
Q 024105          161 VPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET  240 (272)
Q Consensus       161 Ip~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~~~  240 (272)
                      |||+|+|+|||++|+|+|||+||||+|++++++||+||||+|||+|++|||+|++||+||||+||+++|||+|||+|+|+
T Consensus       154 Ip~~V~Gk~Gs~~V~L~PAp~GtGIiag~~~r~vLelAGI~Dv~tks~Gst~t~~N~vKATf~AL~ktys~ltPdlw~e~  233 (254)
T 3u5c_C          154 LATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQ  233 (254)
T ss_dssp             ESSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHTTCCCEEEEEESCTTCHHHHHHHHHHHHHGGGGCCCGGGCSCC
T ss_pred             eeeEEEeeecceEEEEecCCCCcCeecCcHHHHHHHhcCcceEEEEccccCCChHHHHHHHHHHHHhhhcccCHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhh-cccCC
Q 024105          241 RFVKSPYQEYTD-LLTPK  257 (272)
Q Consensus       241 ~~~~~p~~~~~d-~l~~~  257 (272)
                      +|+++||||||| ||++.
T Consensus       234 ~~~~~p~~e~~d~~l~~~  251 (254)
T 3u5c_C          234 PLPVSPLDIYSDEASAQK  251 (254)
T ss_dssp             CCCCCHHHHTTTTSSCC-
T ss_pred             ccCCCcchhhhhHHhhhc
Confidence            999999999999 99863
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e Back     alignment and structure
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E Back     alignment and structure
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E* Back     alignment and structure
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ... Back     alignment and structure
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 272
d1pkpa274 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal 9e-29
d2qale269 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal 1e-27
d2uube269 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal 6e-27
d1pkpa171 d.14.1.1 (A:78-148) Ribosomal protein S5, C-termin 3e-21
d2uube181 d.14.1.1 (E:74-154) Ribosomal protein S5, C-termin 8e-21
d2qale181 d.14.1.1 (E:78-158) Ribosomal protein S5, C-termin 2e-19
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 74 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Ribosomal S5 protein, N-terminal domain
domain: Ribosomal S5 protein, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  102 bits (256), Expect = 9e-29
 Identities = 30/64 (46%), Positives = 41/64 (64%)

Query: 83  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLS 142
           L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +
Sbjct: 8   LEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKN 67

Query: 143 VIPV 146
           +I V
Sbjct: 68  LIEV 71
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 69 Back     information, alignment and structure
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 69 Back     information, alignment and structure
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 71 Back     information, alignment and structure
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 81 Back     information, alignment and structure
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 81 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
d2uube181 Ribosomal protein S5, C-terminal domain {Thermus t 99.94
d1pkpa171 Ribosomal protein S5, C-terminal domain {Bacillus 99.94
d2qale181 Ribosomal protein S5, C-terminal domain {Escherich 99.93
d2uube269 Ribosomal S5 protein, N-terminal domain {Thermus t 99.9
d2qale269 Ribosomal S5 protein, N-terminal domain {Escherich 99.89
d1pkpa274 Ribosomal S5 protein, N-terminal domain {Bacillus 99.89
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S5, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=6.6e-28  Score=184.19  Aligned_cols=78  Identities=29%  Similarity=0.479  Sum_probs=74.2

Q ss_pred             ceeeeeEEeEEeeEEEEeeeCCCCcceeecCchHHHhhhcCcceeeeeccCCCCChhhHHHHHHHHHHhhccCCChHHHh
Q 024105          159 HTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWR  238 (272)
Q Consensus       159 hTIp~~v~Gk~gsv~V~L~PAPrGtGiva~~v~kkiL~lAGI~D~~tk~~Gst~t~~N~aKAtf~AL~kt~s~~TP~~w~  238 (272)
                      .||||+|+|||||++|.|+|||+|+||+|++.+++||++|||+|||+|+.|| +|++|++||||+||++++   ||++++
T Consensus         1 gTIph~v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaGIkDi~~K~~GS-~N~~N~vkAt~~aL~~~~---t~~~va   76 (81)
T d2uube1           1 GTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGS-RNPINIAYATMEALRQLR---TKADVE   76 (81)
T ss_dssp             TBCSSCEEEEETTEEEEEEECCTTCCEECCHHHHHHHHHTTCCSEEEEEEEC-CCHHHHHHHHHHHHHHCC---CHHHHH
T ss_pred             CccceEEEEEECcEEEEEEECCCCCcccccHHHHHHHHHhCcchhhhhcCCC-CCHHHHHHHHHHHHHhCC---CHHHHH
Confidence            3899999999999999999999999999999999999999999999999997 589999999999999998   999887


Q ss_pred             hh
Q 024105          239 ET  240 (272)
Q Consensus       239 ~~  240 (272)
                      +.
T Consensus        77 ~~   78 (81)
T d2uube1          77 RL   78 (81)
T ss_dssp             HH
T ss_pred             Hh
Confidence            63
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure