Citrus Sinensis ID: 024132

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHVSFTLNVHVLDCEKVILLV
ccccEEcccEEccccccccccccccccHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEccccccccHHHHHHHHHccEEEEcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHccccEEEEEEcccccccccccccEEcccccEEEEEcccccHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHccccEEEcEEEEccccccccc
ccHHEcccccccccccccccccccccccccEEEEEEEcccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHcccccHHHHHHHHHccEEEEEEcccHHHHcccccccHHHHHHHHHHHccEEEEEEEEEccHHHHHHccccHHHHcccEEEEEEEccccccccccEEEccccccEcEEEEEEEEEHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEccHHEEHcc
MAASVQLNAKLlgpafivkpatkhflkpARIRCAaaatapptkrysitllpgdgigpEVIAVAKNVLKLAGslegiefafqempmggsaldlvgvplpeeTLAAAKQSDAVLLGAIggykwdknekhlkpetGLLQIREGLKVFanlrpatvlpqlvdsstlkKEVAEGVDLMVVRELTggiyfgkprgygvtehgeeigfnTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHVSFTLNVHVLDCEKVILLV
MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCAAaatapptkrYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGgykwdknekhLKPETGLLQIREGLKVFANLRPAtvlpqlvdsstlkkevaegvDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETarkrhgklcsvDKANVLEVMVYMLKQFSLVAHVSFTLNVHVLDCEKVILLV
MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCaaaatapptKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHVSFTLNVHVLDCEKVILLV
******LNAKLLGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHVSFTLNVHVLDCEKVILL*
********AK*******************************TKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHVSFTLNVHVLDCEKVILLV
MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHVSFTLNVHVLDCEKVILLV
*****Q*NAKLLGPAF****ATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHVSFTLNVHVLDCEKVILLV
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAHVSFTLNVHVLDCEKVILLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query272 2.2.26 [Sep-21-2011]
P93832 405 3-isopropylmalate dehydro yes no 0.919 0.617 0.722 1e-104
P29102 406 3-isopropylmalate dehydro N/A no 0.919 0.615 0.731 1e-103
Q9SA14 404 3-isopropylmalate dehydro no no 0.919 0.618 0.715 1e-101
Q9FMT1 409 3-isopropylmalate dehydro no no 0.919 0.611 0.690 7e-98
P73960 362 3-isopropylmalate dehydro N/A no 0.731 0.549 0.658 3e-71
Q3M8T9 362 3-isopropylmalate dehydro yes no 0.731 0.549 0.673 7e-69
Q8YXA2 362 3-isopropylmalate dehydro yes no 0.731 0.549 0.668 4e-68
P59029 361 3-isopropylmalate dehydro yes no 0.720 0.542 0.642 3e-67
Q5MZ40 365 3-isopropylmalate dehydro yes no 0.779 0.580 0.599 5e-64
Q31N34 365 3-isopropylmalate dehydro yes no 0.779 0.580 0.599 5e-64
>sp|P93832|LEU32_ARATH 3-isopropylmalate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=IMDH2 PE=1 SV=1 Back     alignment and function desciption
 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/252 (72%), Positives = 214/252 (84%), Gaps = 2/252 (0%)

Query: 1   MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVI 60
           MAA++Q N + +      +  +K  L P R+RCA A+  P  KRY+ITLLPGDGIGPEV+
Sbjct: 1   MAAALQTNIRTVKVPATFRAVSKQSLAPFRVRCAVAS--PGKKRYTITLLPGDGIGPEVV 58

Query: 61  AVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120
           ++AKNVL+ AGSLEG+EF F+EMP+GG+ALDLVGVPLPEET++AAK+SDAVLLGAIGGYK
Sbjct: 59  SIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYK 118

Query: 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTG 180
           WD NEKHL+PE GLLQIR  LKVFANLRPATVLPQLVD+STLK+EVAEGVDLMVVRELTG
Sbjct: 119 WDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTG 178

Query: 181 GIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEV 240
           GIYFG+PRG    E+GEE+GFNTEVYAA+E+DRIARVAFETARKR GKLCSVDKANVLE 
Sbjct: 179 GIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA 238

Query: 241 MVYMLKQFSLVA 252
            +   K+ + +A
Sbjct: 239 SILWRKRVTALA 250
Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 5
>sp|P29102|LEU3_BRANA 3-isopropylmalate dehydrogenase, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q9SA14|LEU31_ARATH 3-isopropylmalate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=IMDH1 PE=1 SV=2 Back     alignment and function description
>sp|Q9FMT1|LEU33_ARATH 3-isopropylmalate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=IMDH3 PE=1 SV=1 Back     alignment and function description
>sp|P73960|LEU3_SYNY3 3-isopropylmalate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=leuB PE=3 SV=1 Back     alignment and function description
>sp|Q3M8T9|LEU3_ANAVT 3-isopropylmalate dehydrogenase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=leuB PE=3 SV=1 Back     alignment and function description
>sp|Q8YXA2|LEU3_NOSS1 3-isopropylmalate dehydrogenase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=leuB PE=3 SV=1 Back     alignment and function description
>sp|P59029|LEU3_THEEB 3-isopropylmalate dehydrogenase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuB PE=3 SV=1 Back     alignment and function description
>sp|Q5MZ40|LEU3_SYNP6 3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=leuB PE=3 SV=2 Back     alignment and function description
>sp|Q31N34|LEU3_SYNE7 3-isopropylmalate dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=leuB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
224054378 400 predicted protein [Populus trichocarpa] 0.897 0.61 0.803 1e-110
255579212 406 3-isopropylmalate dehydrogenase, putativ 0.919 0.615 0.784 1e-110
298204597 506 unnamed protein product [Vitis vinifera] 0.915 0.492 0.770 1e-106
225448085 405 PREDICTED: 3-isopropylmalate dehydrogena 0.915 0.614 0.770 1e-106
15220167 405 3-isopropylmalate dehydrogenase 2 [Arabi 0.919 0.617 0.722 1e-102
126201 406 RecName: Full=3-isopropylmalate dehydrog 0.919 0.615 0.731 1e-102
17064730 405 putative 3-isopropylmalate dehydrogenase 0.919 0.617 0.718 1e-101
297842809 405 hypothetical protein ARALYDRAFT_477193 [ 0.919 0.617 0.718 1e-101
21553584 404 putative 3-isopropylmalate dehydrogenase 0.915 0.616 0.718 1e-100
21592944 404 3-methyladenine DNA glycosylase, putativ 0.919 0.618 0.715 5e-99
>gi|224054378|ref|XP_002298230.1| predicted protein [Populus trichocarpa] gi|222845488|gb|EEE83035.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/249 (80%), Positives = 222/249 (89%), Gaps = 5/249 (2%)

Query: 5   VQLNA-KLLGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVA 63
           +Q+NA   + P F++KPA+   L+P+RIRCAAA T   +KRYSITLLPGDGIGPEVI+VA
Sbjct: 1   MQINALHPIKPIFLLKPAS---LRPSRIRCAAATTKQ-SKRYSITLLPGDGIGPEVISVA 56

Query: 64  KNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDK 123
           KNVL LAGSLEGIEF FQEMPMGGSALD+ GVPLP+ETL AAK+SDAVLLGAIGGYKWDK
Sbjct: 57  KNVLNLAGSLEGIEFNFQEMPMGGSALDMAGVPLPDETLLAAKKSDAVLLGAIGGYKWDK 116

Query: 124 NEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIY 183
           NEKHLKPETGLLQ+REGL+VFANLRPATVLPQLVD+STLKKEVAEGVD+MVVRELTGGIY
Sbjct: 117 NEKHLKPETGLLQLREGLEVFANLRPATVLPQLVDASTLKKEVAEGVDVMVVRELTGGIY 176

Query: 184 FGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVY 243
           FGKPRG+G  E GEEIGFNTEVYA YEVDRIARVAFETARKRHGKLCSVDKANVLE  ++
Sbjct: 177 FGKPRGFGTNEDGEEIGFNTEVYATYEVDRIARVAFETARKRHGKLCSVDKANVLEASMF 236

Query: 244 MLKQFSLVA 252
             K+   +A
Sbjct: 237 WRKRVISIA 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579212|ref|XP_002530452.1| 3-isopropylmalate dehydrogenase, putative [Ricinus communis] gi|223529997|gb|EEF31922.1| 3-isopropylmalate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|298204597|emb|CBI23872.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225448085|ref|XP_002276384.1| PREDICTED: 3-isopropylmalate dehydrogenase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|15220167|ref|NP_178171.1| 3-isopropylmalate dehydrogenase 2 [Arabidopsis thaliana] gi|21759255|sp|P93832.1|LEU32_ARATH RecName: Full=3-isopropylmalate dehydrogenase 2, chloroplastic; Short=3-IPM-DH 2; Short=IMDH 2; AltName: Full=Beta-IPM dehydrogenase 2; Flags: Precursor gi|340708011|pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution gi|340708012|pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution gi|340708013|pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution gi|340708014|pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution gi|6730747|gb|AAF27137.1|AC018849_25 putative 3-isopropylmalate dehydrogenase; 30797-28504 [Arabidopsis thaliana] gi|1903021|emb|CAA71268.1| hypothetical 3-isopropylmalate dehydrogenase [Arabidopsis thaliana] gi|332198299|gb|AEE36420.1| 3-isopropylmalate dehydrogenase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|126201|sp|P29102.1|LEU3_BRANA RecName: Full=3-isopropylmalate dehydrogenase, chloroplastic; Short=3-IPM-DH; Short=IMDH; AltName: Full=Beta-IPM dehydrogenase; Flags: Precursor gi|17827|emb|CAA42596.1| 3-isopropylmalate dehydrogenase [Brassica napus] Back     alignment and taxonomy information
>gi|17064730|gb|AAL32519.1| putative 3-isopropylmalate dehydrogenase [Arabidopsis thaliana] gi|21387085|gb|AAM47946.1| putative 3-isopropylmalate dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297842809|ref|XP_002889286.1| hypothetical protein ARALYDRAFT_477193 [Arabidopsis lyrata subsp. lyrata] gi|297335127|gb|EFH65545.1| hypothetical protein ARALYDRAFT_477193 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21553584|gb|AAM62677.1| putative 3-isopropylmalate dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21592944|gb|AAM64894.1| 3-methyladenine DNA glycosylase, putative [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
TAIR|locus:2198893 405 IMD2 "isopropylmalate dehydrog 0.919 0.617 0.710 8.1e-92
TAIR|locus:2029519 404 IMD3 "isopropylmalate dehydrog 0.919 0.618 0.699 4.6e-89
TAIR|locus:2174668 409 IMD1 "isopropylmalate dehydrog 0.919 0.611 0.674 1.3e-86
TIGR_CMR|CHY_0524 374 CHY_0524 "3-isopropylmalate de 0.713 0.518 0.525 2e-49
TIGR_CMR|SPO_0210 367 SPO_0210 "3-isopropylmalate de 0.705 0.523 0.502 1.4e-48
UNIPROTKB|Q9KP82 363 leuB "3-isopropylmalate dehydr 0.761 0.570 0.485 1e-45
TIGR_CMR|VC_2491 363 VC_2491 "3-isopropylmalate deh 0.761 0.570 0.485 1e-45
TIGR_CMR|SO_4235 364 SO_4235 "3-isopropylmalate deh 0.724 0.541 0.48 2.8e-41
TIGR_CMR|BA_1421 354 BA_1421 "3-isopropylmalate deh 0.676 0.519 0.502 3.6e-41
TIGR_CMR|GSU_2879 362 GSU_2879 "3-isopropylmalate de 0.724 0.544 0.45 4.6e-41
TAIR|locus:2198893 IMD2 "isopropylmalate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 179/252 (71%), Positives = 210/252 (83%)

Query:     1 MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCXXXXXXXXXKRYSITLLPGDGIGPEVI 60
             MAA++Q N + +      +  +K  L P R+RC         KRY+ITLLPGDGIGPEV+
Sbjct:     1 MAAALQTNIRTVKVPATFRAVSKQSLAPFRVRCAVASPGK--KRYTITLLPGDGIGPEVV 58

Query:    61 AVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120
             ++AKNVL+ AGSLEG+EF F+EMP+GG+ALDLVGVPLPEET++AAK+SDAVLLGAIGGYK
Sbjct:    59 SIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYK 118

Query:   121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTG 180
             WD NEKHL+PE GLLQIR  LKVFANLRPATVLPQLVD+STLK+EVAEGVDLMVVRELTG
Sbjct:   119 WDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTG 178

Query:   181 GIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEV 240
             GIYFG+PRG    E+GEE+GFNTEVYAA+E+DRIARVAFETARKR GKLCSVDKANVLE 
Sbjct:   179 GIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA 238

Query:   241 MVYMLKQFSLVA 252
              +   K+ + +A
Sbjct:   239 SILWRKRVTALA 250
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0003862 "3-isopropylmalate dehydrogenase activity" evidence=IEA;IGI;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0008152 "metabolic process" evidence=ISS
GO:0009098 "leucine biosynthetic process" evidence=IEA;IGI;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009536 "plastid" evidence=ISS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006744 "ubiquinone biosynthetic process" evidence=RCA
TAIR|locus:2029519 IMD3 "isopropylmalate dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174668 IMD1 "isopropylmalate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0524 CHY_0524 "3-isopropylmalate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0210 SPO_0210 "3-isopropylmalate dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KP82 leuB "3-isopropylmalate dehydrogenase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2491 VC_2491 "3-isopropylmalate dehydrogenase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4235 SO_4235 "3-isopropylmalate dehydrogenase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1421 BA_1421 "3-isopropylmalate dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2879 GSU_2879 "3-isopropylmalate dehydrogenase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29102LEU3_BRANA1, ., 1, ., 1, ., 8, 50.73120.91910.6157N/Ano
P93832LEU32_ARATH1, ., 1, ., 1, ., 8, 50.72220.91910.6172yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.921
4th Layer1.1.1.850.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
PLN02329 409 PLN02329, PLN02329, 3-isopropylmalate dehydrogenas 1e-125
PRK00772 358 PRK00772, PRK00772, 3-isopropylmalate dehydrogenas 1e-112
TIGR00169 346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 1e-91
pfam00180 349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 2e-84
COG0473 348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 3e-69
TIGR02089 352 TIGR02089, TTC, tartrate dehydrogenase 1e-28
TIGR02088 322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 1e-27
PRK03437 344 PRK03437, PRK03437, 3-isopropylmalate dehydrogenas 2e-25
PRK14025 330 PRK14025, PRK14025, multifunctional 3-isopropylmal 5e-25
PRK08194 352 PRK08194, PRK08194, tartrate dehydrogenase; Provis 9e-25
PRK08997 334 PRK08997, PRK08997, isocitrate dehydrogenase; Prov 2e-19
TIGR00175 333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 3e-12
PRK06451 412 PRK06451, PRK06451, isocitrate dehydrogenase; Vali 4e-10
PLN00118 372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 4e-09
PLN00123 360 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+ 4e-07
PRK09222 482 PRK09222, PRK09222, isocitrate dehydrogenase; Vali 7e-07
COG0538 407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 4e-05
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 5e-05
>gnl|CDD|215188 PLN02329, PLN02329, 3-isopropylmalate dehydrogenase Back     alignment and domain information 
 Score =  362 bits (929), Expect = e-125
 Identities = 179/256 (69%), Positives = 208/256 (81%), Gaps = 6/256 (2%)

Query: 1   MAASVQLNAKL----LGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIG 56
           MAA +Q N +L    + P          F  P RIRCAAA+  P  KRY+I LLPGDGIG
Sbjct: 1   MAAFLQTNIRLNSIKIVPGRYSSLTDHQFRAPYRIRCAAAS--PGKKRYNIALLPGDGIG 58

Query: 57  PEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAI 116
           PEVI+VAKNVL+ AGSLEG+EF FQEMP+GG+ALDLVGVPLPEET  AAKQSDA+LLGAI
Sbjct: 59  PEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAI 118

Query: 117 GGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVR 176
           GGYKWDKNEKHL+PE  L  +R  LKVFANLRPATVLPQLVD+STLKKEVAEGVD+M+VR
Sbjct: 119 GGYKWDKNEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVR 178

Query: 177 ELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKAN 236
           ELTGGIYFG+PRG  + E+GEE+G +TE+YAA+E+DRIARVAFETARKR GKLCSVDKAN
Sbjct: 179 ELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKAN 238

Query: 237 VLEVMVYMLKQFSLVA 252
           VL+  +   K+ + +A
Sbjct: 239 VLDASILWRKRVTALA 254

Length = 409
>gnl|CDD|234832 PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233718 TIGR02089, TTC, tartrate dehydrogenase Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|179579 PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|181281 PRK08194, PRK08194, tartrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|181606 PRK08997, PRK08997, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>gnl|CDD|235803 PRK06451, PRK06451, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|215065 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|236416 PRK09222, PRK09222, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 272
PLN02329 409 3-isopropylmalate dehydrogenase 100.0
COG0473 348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
TIGR00169 349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK00772 358 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR02089 352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PRK03437 344 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK08194 352 tartrate dehydrogenase; Provisional 100.0
PRK08997 334 isocitrate dehydrogenase; Provisional 100.0
PRK14025 330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PLN00118 372 isocitrate dehydrogenase (NAD+) 100.0
TIGR02088 322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PLN00123 360 isocitrate dehydrogenase (NAD+) 100.0
PF00180 348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
PRK06451 412 isocitrate dehydrogenase; Validated 100.0
PRK07006 409 isocitrate dehydrogenase; Reviewed 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
TIGR00175 333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
TIGR00183 416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK07362 474 isocitrate dehydrogenase; Validated 100.0
KOG0785 365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
KOG0784 375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG0786 363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
PRK08299 402 isocitrate dehydrogenase; Validated 100.0
PLN00103 410 isocitrate dehydrogenase (NADP+); Provisional 100.0
TIGR00127 409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
COG0538 407 Icd Isocitrate dehydrogenases [Energy production a 100.0
PTZ00435 413 isocitrate dehydrogenase; Provisional 100.0
PLN03065 483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PLN00096 393 isocitrate dehydrogenase (NADP+); Provisional 99.87
KOG1526 422 consensus NADP-dependent isocitrate dehydrogenase 99.2
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=1.7e-71  Score=532.33  Aligned_cols=269  Identities=68%  Similarity=1.020  Sum_probs=230.8

Q ss_pred             Ccccccccceee---cccccccccccc-cCCccccccccccCCCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCC
Q 024132            1 MAASVQLNAKLL---GPAFIVKPATKH-FLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGI   76 (272)
Q Consensus         1 ~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~   76 (272)
                      |++..|-|+.+-   -+.|--...+.| |--|.+++|...-+  ++++|+|+||||||||||||+++++||+++..++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~   78 (409)
T PLN02329          1 MAAFLQTNIRLNSIKIVPGRYSSLTDHQFRAPYRIRCAAASP--GKKRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGL   78 (409)
T ss_pred             CCccccccchhhhhccccccccCCCcccccchhhhccccccc--ccceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCC
Confidence            444445554433   333333333444 44688999987765  445699999999999999999999999999888889


Q ss_pred             eeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCC
Q 024132           77 EFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQL  156 (272)
Q Consensus        77 ~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~  156 (272)
                      +|+|+++++|+++|+++|++||++|++.|+++|++||||+|+|+|+..+...+++++++.||++|||||||||+|++||+
T Consensus        79 ~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~~~~~~~~~e~~ll~LRk~ldLyaNvRPvr~~pg~  158 (409)
T PLN02329         79 EFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWDKNEKHLRPEMALFYLRRDLKVFANLRPATVLPQL  158 (409)
T ss_pred             ceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCCCCcccccccccHHHHHHHcCCeEeeeeeeccCCC
Confidence            99999999999999999999999999999999999999999998754334456778899999999999999999999999


Q ss_pred             ccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCc
Q 024132          157 VDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKAN  236 (272)
Q Consensus       157 ~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaN  236 (272)
                      ++.||||++..+++|||||||||||+|+|.+++......++++|+++++|||+++|||+|+||+||++|+++||+|||+|
T Consensus       159 ~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~~~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaN  238 (409)
T PLN02329        159 VDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKAN  238 (409)
T ss_pred             CCcCcccccccCCceEEEEEECCCCeecCCCcceecccCCceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence            98889998777899999999999999999864321011245789999999999999999999999999988999999999


Q ss_pred             cccchhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132          237 VLEVMVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL  271 (272)
Q Consensus       237 Vl~~s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv  271 (272)
                      ||++++||+++|+++|++  +|++++++||+++||||
T Consensus       239 Vl~t~~lf~~~~~evA~eyPdV~~~~~~VDa~a~~LV  275 (409)
T PLN02329        239 VLDASILWRKRVTALASEYPDVELSHMYVDNAAMQLI  275 (409)
T ss_pred             CccchHHHHHHHHHHHhhCCCcccchhHHHHHHHHHh
Confidence            999889999999999994  89999999999999997

>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
3r8w_A 405 Structure Of 3-Isopropylmalate Dehydrogenase Isofor 1e-103
3u1h_A 390 Crystal Structure Of Ipmdh From The Last Common Anc 3e-54
1xac_A 345 Chimera Isopropylmalate Dehydrogenase Between Bacil 4e-54
2y3z_A 359 Structure Of Isopropylmalate Dehydrogenase From The 3e-53
1osi_A 345 Structure Of 3-Isopropylmalate Dehydrogenase Length 3e-53
1g2u_A 345 The Structure Of The Mutant, A172v, Of 3-Isopropylm 4e-53
1osj_A 345 Structure Of 3-isopropylmalate Dehydrogenase Length 5e-53
1dr8_A 344 Structure Of Modified 3-Isopropylmalate Dehydrogena 6e-53
1gc9_A 345 The Crystal Structure Of Thermus Thermophilus 3-Iso 6e-53
1wal_A 345 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M21 6e-53
1dr0_A 346 Structure Of Modified 3-isopropylmalate Dehydrogena 6e-53
1gc8_A 345 The Crystal Structure Of Thermus Thermophilus 3-Iso 6e-53
1dpz_A 349 Stucture Of Modified 3-Isopropylmalate Dehydrogenas 7e-53
1ipd_A 345 Three-Dimensional Structure Of A Highly Thermostabl 7e-53
1idm_A 343 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chime 2e-50
1a05_A 358 Crystal Structure Of The Complex Of 3-Isopropylmala 2e-49
4iwh_A 363 Crystal Structure Of A 3-isopropylmalate Dehydrogen 5e-48
2ayq_A 366 3-Isopropylmalate Dehydrogenase From The Moderate F 4e-47
1v53_A 366 The Crystal Structure Of 3-Isopropylmalate Dehydrog 4e-47
1v5b_A 366 The Structure Of The Mutant, S225a And E251l, Of 3- 5e-47
3vkz_A 375 3-Isopropylmalate Dehydrogenase From Shewanella One 2e-43
1cnz_A 363 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmon 2e-43
1cm7_A 363 3-Isopropylmalate Dehydrogenase From Escherichia Co 3e-43
3vml_A 375 Chimera 3-Isopropylmalate Dehydrogenase Between She 5e-43
3vmk_A 375 3-Isopropylmalate Dehydrogenase From Shewanella Ben 5e-42
3udu_A 361 Crystal Structure Of Putative 3-Isopropylmalate Deh 1e-41
3udo_A 361 Crystal Structure Of Putative Isopropylamlate Dehyd 3e-41
1vlc_A 366 Crystal Structure Of 3-isopropylmalate Dehydrogenas 4e-40
1wpw_A 336 Crystal Structure Of Ipmdh From Sulfolobus Tokodaii 2e-15
3fmx_X 364 Crystal Structure Of Tartrate Dehydrogenase From Ps 6e-15
3flk_A 364 Crystal Structure Of Tartrate Dehydrogenase From Ps 1e-13
3ah3_A 334 Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehyd 2e-11
1w0d_A 337 The High Resolution Structure Of Mycobacterium Tube 2e-11
3asj_A 334 Crystal Structure Of Homoisocitrate Dehydrogenase I 3e-11
1x0l_A 333 Crystal Structure Of Tetrameric Homoisocitrate Dehy 3e-11
3ty3_A 366 Crystal Structure Of Homoisocitrate Dehydrogenase F 3e-09
2iv0_A 412 Thermal Stability Of Isocitrate Dehydrogenase From 3e-08
2d1c_A 496 Crystal Structure Of Tt0538 Protein From Thermus Th 4e-08
2dht_A 409 Crystal Structure Of Isocitrate Dehydrogenase From 3e-06
3blw_B 354 Yeast Isocitrate Dehydrogenase With Citrate And Amp 5e-05
3blv_B 354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 6e-05
3blw_A 349 Yeast Isocitrate Dehydrogenase With Citrate And Amp 6e-05
3blv_A 354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 2e-04
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution Length = 405 Back     alignment and structure 
Iteration: 1

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/253 (70%), Positives = 210/253 (83%), Gaps = 2/253 (0%)
Query: 1   MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCXXXXXXXXXKRYSITLLPGDGIGPEVI 60
           MAA++Q N + +      +  +K  L P R+RC         KRY+ITLLPGDGIGPEV+
Sbjct: 1   MAAALQTNIRTVKVPATFRAVSKQSLAPFRVRCAVASPGK--KRYTITLLPGDGIGPEVV 58
Query: 61  AVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120
           ++AKNVL+ AGSLEG+EF F+EMP+GG+ALDLVGVPLPEET++AAK+SDAVLLGAIGGYK
Sbjct: 59  SIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYK 118
Query: 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTG 180
           WD NEKHL+PE GLLQIR  LKVFANLRPATVLPQLVD+STLK+EVAEGVDLMVVRELTG
Sbjct: 119 WDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTG 178
Query: 181 GIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEV 240
           GIYFG+PRG    E+GEE+GFNTEVYAA+E+DRIARVAFETARKR GKLCSVDKANVLE 
Sbjct: 179 GIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA 238
Query: 241 MVYMLKQFSLVAH 253
            +   K+ + +A 
Sbjct: 239 SILWRKRVTALAS 251
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor Of Bacillus Length = 390 Back     alignment and structure
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis (M) And Thermus Thermophilus (T) From N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated At S82r. Low Temperature (100k) Structure. Length = 345 Back     alignment and structure
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus Thermophilus - Apo Enzyme Length = 359 Back     alignment and structure
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate Dehydrogenase From Thermus Thermophilus Hb8 : Its Thermostability And Structure Length = 345 Back     alignment and structure
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd177 Length = 344 Back     alignment and structure
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Gly Length = 345 Back     alignment and structure
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from Thermus Thermophilus Length = 345 Back     alignment and structure
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At The C- Terminus, Hd708 Length = 346 Back     alignment and structure
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Phe Length = 345 Back     alignment and structure
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd711 Length = 349 Back     alignment and structure
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus Thermophilus At 2.2 Angstroms Resolution Length = 345 Back     alignment and structure
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera Length = 343 Back     alignment and structure
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate Dehydrogenase From Thiobacillus Ferrooxidans With 3- Isopropylmalate Length = 358 Back     alignment and structure
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase From Burkholderia Pseudomallei Length = 363 Back     alignment and structure
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate Facultative Thermophile, Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3- Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 At Atmospheric Pressure Length = 375 Back     alignment and structure
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella Typhimurium Length = 363 Back     alignment and structure
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli Length = 363 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica Db21 Mt-2 Length = 375 Back     alignment and structure
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase (tm0556) From Thermotoga Maritima At 1.90 A Resolution Length = 366 Back     alignment and structure
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii Length = 336 Back     alignment and structure
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From Pseudomonas Complex With Nadh, Oxalate And Metal Ion Length = 364 Back     alignment and structure
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehydrogenase Created By Directed Evolution Length = 334 Back     alignment and structure
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium Tuberculosis Leub (Rv2995c) Length = 337 Back     alignment and structure
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In Complex With A Designed Inhibitor Length = 334 Back     alignment and structure
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate Dehydrogenase From An Extreme Thermophile, Thermus Thermophilus Length = 333 Back     alignment and structure
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine Length = 366 Back     alignment and structure
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From Archaeoglobus Fulgidus Studied By Crystal Structure Analysis And Engineering Of Chimers Length = 412 Back     alignment and structure
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus Thermophilus Hb8 Length = 496 Back     alignment and structure
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Sulfolobus Tokodaii Strain7 Length = 409 Back     alignment and structure
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 349 Back     alignment and structure
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
3r8w_A 405 3-isopropylmalate dehydrogenase 2, chloroplastic; 1e-122
1a05_A 358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 1e-113
2y3z_A 359 3-isopropylmalate dehydrogenase; oxidoreductase, L 1e-112
3u1h_A 390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 1e-111
1cnz_A 363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 1e-110
3vmk_A 375 3-isopropylmalate dehydrogenase; oxidoreductase, d 1e-109
1vlc_A 366 3-isopropylmalate dehydrogenase; TM0556, structura 1e-108
3udu_A 361 3-isopropylmalate dehydrogenase; structural genomi 1e-108
1w0d_A 337 3-isopropylmalate dehydrogenase; oxidoreductase, l 9e-76
3flk_A 364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 8e-75
1wpw_A 336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 4e-62
3ty4_A 366 Probable homoisocitrate dehydrogenase; B-hydroxyac 1e-56
1x0l_A 333 Homoisocitrate dehydrogenase; oxidoreductase, deca 2e-50
2d4v_A 429 Isocitrate dehydrogenase; alpha and beta protein, 3e-39
3blx_B 354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 4e-32
3blx_A 349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 6e-32
2iv0_A 412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 3e-30
1hqs_A 423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 5e-29
1tyo_A 435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 2e-27
2e0c_A 409 409AA long hypothetical NADP-dependent isocitrate 1e-25
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 2e-25
3dms_A 427 Isocitrate dehydrogenase [NADP]; struc genomics, s 2e-24
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Length = 405 Back     alignment and structure
 Score =  355 bits (912), Expect = e-122
 Identities = 179/242 (73%), Positives = 208/242 (85%), Gaps = 2/242 (0%)

Query: 1   MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVI 60
           MAA++Q N + +      +  +K  L P R+RCA A+     KRY+ITLLPGDGIGPEV+
Sbjct: 1   MAAALQTNIRTVKVPATFRAVSKQSLAPFRVRCAVASPGK--KRYTITLLPGDGIGPEVV 58

Query: 61  AVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYK 120
           ++AKNVL+ AGSLEG+EF F+EMP+GG+ALDLVGVPLPEET++AAK+SDAVLLGAIGGYK
Sbjct: 59  SIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYK 118

Query: 121 WDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTG 180
           WD NEKHL+PE GLLQIR  LKVFANLRPATVLPQLVD+STLK+EVAEGVDLMVVRELTG
Sbjct: 119 WDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTG 178

Query: 181 GIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEV 240
           GIYFG+PRG    E+GEE+GFNTEVYAA+E+DRIARVAFETARKR GKLCSVDKANVLE 
Sbjct: 179 GIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA 238

Query: 241 MV 242
            +
Sbjct: 239 SI 240
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Length = 358 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Length = 359 Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Length = 390 Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Length = 363 Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Length = 375 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Length = 366 Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A Length = 361 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Length = 337 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Length = 364 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
3r8w_A 405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
3u1h_A 390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
3udu_A 361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3vmk_A 375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
1cnz_A 363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
2y3z_A 359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
1a05_A 358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1vlc_A 366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
3flk_A 364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
1w0d_A 337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
1wpw_A 336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
3ty4_A 366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
1x0l_A 333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
2iv0_A 412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
3blx_B 354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
3dms_A 427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
2e0c_A 409 409AA long hypothetical NADP-dependent isocitrate 100.0
2d4v_A 429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1tyo_A 435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
1hqs_A 423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
3blx_A 349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
3us8_A 427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
2uxq_A 402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1lwd_A 413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
1zor_A 399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
4aoy_A 402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2qfy_A 427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=8.6e-75  Score=554.76  Aligned_cols=269  Identities=68%  Similarity=1.057  Sum_probs=212.5

Q ss_pred             CcccccccceeecccccccccccccCCccccccccccCCCCCCceEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEE
Q 024132            1 MAASVQLNAKLLGPAFIVKPATKHFLKPARIRCAAAATAPPTKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAF   80 (272)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~   80 (272)
                      |++..+-|.-.++-.--..-++|.-..|.+++|.+..++.  ++|+|+||||||||||||+++++||+++.+++|++|+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~   78 (405)
T 3r8w_A            1 MAAALQTNIRTVKVPATFRAVSKQSLAPFRVRCAVASPGK--KRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNF   78 (405)
T ss_dssp             ------------------------------------------CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CccccccceeccccchhhhcccccccCcceeEeecccccC--CCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEE
Confidence            4444454444444332333355555778999998665554  45899999999999999999999999999888999999


Q ss_pred             EEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCCCCCCCCccchhhhhhccCceEEeEEeeecCCCccCC
Q 024132           81 QEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSS  160 (272)
Q Consensus        81 ~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~s  160 (272)
                      +++++|+++|+++|++||++++++|+++|++||||+|+|+|+..+.+.+|+++|+.||++||||||+||+|++||+.+.|
T Consensus        79 ~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~~~~~~~~~p~~~ll~LRk~ldLyaNlRP~k~~~gl~~~s  158 (405)
T 3r8w_A           79 REMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDAS  158 (405)
T ss_dssp             EECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTSCGGGSHHHHHHHHHHHHTCCEEEEEEECCGGGGGGS
T ss_pred             EEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCccCCccccCcccchHHHHHHhCCeEEEEEeeccCCccccC
Confidence            99999999999999999999999999999999999999998766666777888999999999999999999999998789


Q ss_pred             ccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeEeecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccc
Q 024132          161 TLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEV  240 (272)
Q Consensus       161 pLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~  240 (272)
                      |||++.++++|||||||||||+|+|.+++....+.++++|+++++||++++|||+|+|||||++|+||||+|||+|||++
T Consensus       159 plk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk~  238 (405)
T 3r8w_A          159 TLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA  238 (405)
T ss_dssp             SBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECSSSCEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHH
T ss_pred             ccccccCCCceEEEEeeCCCCeecCCccccccCCCCceEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc
Confidence            99987788999999999999999998654321123467899999999999999999999999999999999999999997


Q ss_pred             hhhHHHHHHHHhcC--cceeeeEeeecccceec
Q 024132          241 MVYMLKQFSLVAHV--SFTLNVHVLDCEKVILL  271 (272)
Q Consensus       241 s~lf~ev~~eva~~--~v~~~~~~iD~~~m~lv  271 (272)
                      ++||+++|+|++++  +|+++|++||+++||||
T Consensus       239 sglf~~~~~eva~eYPdV~~~~~~VD~~amqLV  271 (405)
T 3r8w_A          239 SILWRKRVTALASEYPDVELSHMYVDNAAMQLV  271 (405)
T ss_dssp             HHHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHH
Confidence            79999999999984  89999999999999997
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 272
d1cnza_ 363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-56
d1a05a_ 357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-55
d1v53a1 356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 9e-53
d1vlca_ 362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-51
d1g2ua_ 345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-51
d1hqsa_ 423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 1e-41
d1wpwa_ 336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-40
d1w0da_ 337 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 6e-37
d1pb1a_ 416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 9e-35
d1lwda_ 413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-19
d1t0la_ 414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 2e-14
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Salmonella typhimurium [TaxId: 90371]

 Score =  183 bits (466), Expect = 1e-56
 Identities = 92/207 (44%), Positives = 133/207 (64%), Gaps = 3/207 (1%)

Query: 42  TKRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEET 101
           +K Y I +LPGDGIGPEV+A A  V+    S   +        +GG A+D  G PLP+ T
Sbjct: 2   SKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKAT 61

Query: 102 LAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSS 160
           +   +Q+DA+L G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L    
Sbjct: 62  VEGCEQADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFC 121

Query: 161 TLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAF 219
            L+ ++ A G D++ VRELTGGIYFG+P+G   +   E+  F+TEVY  +E++RIAR+AF
Sbjct: 122 PLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKA-FDTEVYHRFEIERIARIAF 180

Query: 220 ETARKRHGKLCSVDKANVLEVMVYMLK 246
           E+ARKR  K+ S+DKANVL+  +   +
Sbjct: 181 ESARKRRRKVTSIDKANVLQSSILWRE 207
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Length = 337 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
d1g2ua_ 345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1a05a_ 357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1v53a1 356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1cnza_ 363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1vlca_ 362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1w0da_ 337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1wpwa_ 336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1hqsa_ 423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1pb1a_ 416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1lwda_ 413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_ 414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 94.99
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.7e-65  Score=481.28  Aligned_cols=222  Identities=48%  Similarity=0.794  Sum_probs=208.9

Q ss_pred             eEEEEECCCCccHHHHHHHHHHHHHhhcccCCeeEEEEEecchhhhhhcCCCCCHHHHHHHHhcCeEEEeeccCCCCCCC
Q 024132           45 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKN  124 (272)
Q Consensus        45 ~~IavIpGDGIGPEV~~aa~~VL~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~Gavg~p~~~~~  124 (272)
                      +||+||||||||||||+++++||+++.+.++++|+|+++++|+++|+++|+++|+++++.|+++|++||||+++|.++..
T Consensus         1 mkIavipGDGIGpEV~~~a~~Vl~a~~~~~~~~ie~~~~~~G~~~~~~~G~~lp~et~~~i~~~dail~Gaig~p~~~~~   80 (345)
T d1g2ua_           1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGL   80 (345)
T ss_dssp             CEEEEEEESTTHHHHHHHHHHHHHHHHHHHCCCCEEEECCCTHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred             CEEEEECCCcCHHHHHHHHHHHHHHHHHHhCCCeEEEEEEechhhHHhhCCcCCHHHHHHHHHhhhhhccccCCCCCCCC
Confidence            48999999999999999999999999888899999999999999999999999999999999999999999999988765


Q ss_pred             CCCCCCccchhhhhhccCceEEeEEeeecCCCccCCccccccCCCccEEEEeecCCccccCCCCCCcccccCcceEEEeE
Q 024132          125 EKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTE  204 (272)
Q Consensus       125 ~~~~~~~s~~l~LR~~ldLyanvRPvr~~pg~~~~spLk~~~~~~iDivIVREnTEG~Y~g~~~~~~~~~~~~~vA~~~~  204 (272)
                      +...++++.++.||++||||+|+||++++||+...+|++++.++++|++||||||||+|+|.+     +...++++++++
T Consensus        81 ~~~~~~~~~~l~lR~~ldLyanvRP~~~~~g~~~~~p~~~~~~~~iD~vivREnteg~Y~g~~-----~~~~~~~~~~~~  155 (345)
T d1g2ua_          81 PRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEP-----RGMSEAEAWNTE  155 (345)
T ss_dssp             CGGGCHHHHHHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSS-----CEECSSCEECCC
T ss_pred             CccccccchhhhhhhhhhhhhhhhhhccccccccccCcccccccCccEEEecccccccccCCc-----cccccccccceE
Confidence            555666778999999999999999999999999889999887899999999999999999984     345678999999


Q ss_pred             eecHHHHHHHHHHHHHHHHhCCCcEEEEeCCccccchhhHHHHHHHHhc--CcceeeeEeeecccceec
Q 024132          205 VYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEVMVYMLKQFSLVAH--VSFTLNVHVLDCEKVILL  271 (272)
Q Consensus       205 ~iTr~~~eRIar~AFe~A~~r~kkVT~vhKaNVl~~s~lf~ev~~eva~--~~v~~~~~~iD~~~m~lv  271 (272)
                      +|||++++||+|+|||||++|+|+||++||+|||+++.+|+++++++++  ++|++++++||+++||||
T Consensus       156 ~~t~~~~~Ri~r~Afe~A~~~~k~vt~v~KaNv~~~~~~~~~~~~~va~~yp~i~~~~~~vD~~~~~lv  224 (345)
T d1g2ua_         156 RYSKPEVERVARVAFEVARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLV  224 (345)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHH
T ss_pred             EecHHHHHHHHHHHHHHHHHcCCceeeccCCCcccccchhhHHHHHHHhhCCCceeehHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988899999999999  499999999999999997
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure