Citrus Sinensis ID: 024148

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MSASGHRSSMSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQRSNGEQIRN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
msasghrssmstssssssssvpareidPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDeknsslkeHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESqrsngeqirn
Flexible Loop (DISEMBL)
msasghrssmstssssssssvparEIDPLLKDLNEKKQSFRKNVVSLAAELKEVrtrlasqeqcfvkETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAkagvnkdcELRKLldevspknferinkllvvkdeeihKLKDEIKIMsahwklktkelesqrsngeqirn
Low Complexity Region (SEG)
MsasghrssmstssssssssVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRsqlaatkatadasaasaqsaqlqclalVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQRSNGEQIRN
Disordered region (IsUnstruct)
**********************************************L****************CFV*************************************ACTAEKYLMQLDG*************************CLAL*********************************************VFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKL*****************
Disordered Region (DISOPRED)
********************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
***********************REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL****************AQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL*********LKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTK**************
Disordered Region (DISPRO)
**********************AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQR********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASGHRSSMSTSSSSSSSSVPAREIDPLxxxxxxxxxxxxxxxxxxxxxLKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQRSNGEQIRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
224124546	344	predicted protein [Populus trichocarpa]	0.933	0.738	0.818	1e-99
359487694	355	PREDICTED: uncharacterized protein LOC10	0.886	0.678	0.825	5e-99
224122832	344	predicted protein [Populus trichocarpa]	0.933	0.738	0.783	6e-99
255543022	340	conserved hypothetical protein [Ricinus	0.863	0.691	0.831	1e-97
356534983	326	PREDICTED: uncharacterized protein LOC10	0.919	0.766	0.792	1e-95
356575301	345	PREDICTED: uncharacterized protein LOC10	0.933	0.736	0.783	2e-95
356534981	346	PREDICTED: uncharacterized protein LOC10	0.919	0.722	0.792	3e-95
296089842	349	unnamed protein product [Vitis vinifera]	0.852	0.664	0.823	7e-94
449453990	347	PREDICTED: uncharacterized protein LOC10	0.886	0.694	0.767	1e-89
297812883	1147	hypothetical protein ARALYDRAFT_326902 [	0.875	0.207	0.697	1e-88

>gi|224124546|ref|XP_002330050.1| predicted protein [Populus trichocarpa] gi|222871475|gb|EEF08606.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 208/254 (81%), Positives = 228/254 (89%)

Query: 10  MSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET 69
           MS    SSS+S P REIDPLLKDLNEKK SFRKNVVSLAAELK VR RLASQEQ F KET
Sbjct: 1   MSVLERSSSTSTPVREIDPLLKDLNEKKLSFRKNVVSLAAELKGVRNRLASQEQSFAKET 60

Query: 70  LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATAD 129
            TRQEAE KAK ME+EI +LQ+ +EERNG+L ASA TA+KYL +LD LRSQLAAT+ATAD
Sbjct: 61  ETRQEAENKAKIMEEEISRLQERMEERNGQLLASASTADKYLTELDRLRSQLAATQATAD 120

Query: 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189
           ASAASAQSAQLQCLAL+KELD KNSSLKEHE+RVTRLG+QLDNLQKDLQARESSQKQLKD
Sbjct: 121 ASAASAQSAQLQCLALIKELDAKNSSLKEHEERVTRLGEQLDNLQKDLQARESSQKQLKD 180

Query: 190 EVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIM 249
           EV RIE DIM+ I++AG +KDCELRKLLDEVSPKNFE++NKLLVVKDEEI KLKDEI++M
Sbjct: 181 EVTRIEHDIMKAISQAGDSKDCELRKLLDEVSPKNFEKMNKLLVVKDEEITKLKDEIRVM 240

Query: 250 SAHWKLKTKELESQ 263
           SAHWKLKTKELESQ
Sbjct: 241 SAHWKLKTKELESQ 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487694|ref|XP_002276639.2| PREDICTED: uncharacterized protein LOC100259639 [Vitis vinifera]

 Score =  366 bits (940), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 199/241 (82%), Positives = 219/241 (90%)

Query: 23  AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
            R+IDPLLKDLNEKKQSFRKNVVSLAAELKEVR RLASQEQ F KETL R+ AE KAK+M
Sbjct: 26  VRDIDPLLKDLNEKKQSFRKNVVSLAAELKEVRGRLASQEQSFAKETLNRKVAETKAKSM 85

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
           E+EI +LQK+LEERNG+LQASA T EKYL +LDGLRSQL+ T+ATADASAASAQSAQLQC
Sbjct: 86  EEEIGRLQKSLEERNGQLQASAMTTEKYLQELDGLRSQLSFTQATADASAASAQSAQLQC 145

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
           LAL+KELDEKN SLKEH DRV RLG+QLDNLQKDLQARE SQKQLKDEV RIE DIMQ +
Sbjct: 146 LALIKELDEKNISLKEHGDRVNRLGEQLDNLQKDLQAREYSQKQLKDEVLRIEHDIMQAV 205

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
           AKAG N+DCELRK+LDEVSPKNFE+INKLL+ KD+EI KLKDEI+IMSAHWKLKTKE+ES
Sbjct: 206 AKAGANRDCELRKILDEVSPKNFEKINKLLIAKDDEIAKLKDEIRIMSAHWKLKTKEMES 265

Query: 263 Q 263
           Q
Sbjct: 266 Q 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122832|ref|XP_002318927.1| predicted protein [Populus trichocarpa] gi|222857303|gb|EEE94850.1| predicted protein [Populus trichocarpa]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 199/254 (78%), Positives = 222/254 (87%)

Query: 10  MSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET 69
           MS     SS S   RE DPLLKDLNEKKQ FRKNVVSLAAELKE R RLASQEQ F KET
Sbjct: 1   MSVLEKPSSISSSVRETDPLLKDLNEKKQGFRKNVVSLAAELKEARNRLASQEQSFAKET 60

Query: 70  LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATAD 129
           +TRQEAE KAK ME EI +LQ+ LEE+NG+LQ +A TAEKYL +LDGLRSQLAAT+ATAD
Sbjct: 61  VTRQEAENKAKTMEVEISRLQERLEEKNGQLQVTASTAEKYLTELDGLRSQLAATRATAD 120

Query: 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189
           ASAASAQS QLQCLAL+KE+D KNSSLKEHE+RV+RLG QLDNLQKDLQARESSQ+QLKD
Sbjct: 121 ASAASAQSVQLQCLALIKEIDAKNSSLKEHEERVSRLGDQLDNLQKDLQARESSQRQLKD 180

Query: 190 EVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIM 249
           EV RIE DIM+ I++AG +KDCELRKLLDEVSPKNF+++NK+LVVKDEEI KLKDEI++M
Sbjct: 181 EVMRIEHDIMRAISQAGDSKDCELRKLLDEVSPKNFDKMNKILVVKDEEIAKLKDEIRVM 240

Query: 250 SAHWKLKTKELESQ 263
           S HWKLKTKELESQ
Sbjct: 241 STHWKLKTKELESQ 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543022|ref|XP_002512574.1| conserved hypothetical protein [Ricinus communis] gi|223548535|gb|EEF50026.1| conserved hypothetical protein [Ricinus communis]

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/243 (83%), Positives = 220/243 (90%), Gaps = 8/243 (3%)

Query: 21  VPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAK 80
           VP RE+DPLLKDLNEKKQSFR+NVVSLAAELKEVR+RLASQEQ F        EAE KAK
Sbjct: 16  VPVRELDPLLKDLNEKKQSFRRNVVSLAAELKEVRSRLASQEQSF--------EAENKAK 67

Query: 81  NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQL 140
            ME+EIC LQ+ LEERNG+LQ SA TAEKYL +LDGLRSQLAAT+ATADASAASAQSAQL
Sbjct: 68  TMEEEICILQRRLEERNGQLQTSASTAEKYLDELDGLRSQLAATQATADASAASAQSAQL 127

Query: 141 QCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200
           QCLAL+KELD KNSSLKEHEDRVTRLG+QLDNLQKDLQARESSQ+QLKD+V RIEQDIM+
Sbjct: 128 QCLALLKELDMKNSSLKEHEDRVTRLGEQLDNLQKDLQARESSQRQLKDDVLRIEQDIME 187

Query: 201 TIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL 260
            IAKAG  KDCELRKLLDEVSPKNFE+IN+LLVVKDEEI KLKDEI+IMSAHWKLKTK+L
Sbjct: 188 AIAKAGTGKDCELRKLLDEVSPKNFEKINRLLVVKDEEIAKLKDEIRIMSAHWKLKTKDL 247

Query: 261 ESQ 263
           E+Q
Sbjct: 248 ETQ 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534983|ref|XP_003536029.1| PREDICTED: uncharacterized protein LOC100777398 isoform 2 [Glycine max]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/250 (79%), Positives = 224/250 (89%)

Query: 14  SSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQ 73
           SSS +S+V ARE+DPLL+DLNEKKQSFR+NVVSLA ELKE+R+RLASQEQ + KET TRQ
Sbjct: 6   SSSLTSTVAAREVDPLLQDLNEKKQSFRRNVVSLAVELKELRSRLASQEQSYAKETQTRQ 65

Query: 74  EAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAA 133
           EAE  AKNME +I +LQK LEERN +LQASA +AEKYL +LD LR+QL  T+ATADASAA
Sbjct: 66  EAETNAKNMELQIGRLQKNLEERNEQLQASASSAEKYLKELDDLRTQLVTTRATADASAA 125

Query: 134 SAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFR 193
           SAQSAQLQCL LVKEL+EKN SL+EHEDRV RLG+QLDNLQKDLQARESSQKQLKDEV R
Sbjct: 126 SAQSAQLQCLELVKELNEKNGSLREHEDRVLRLGEQLDNLQKDLQARESSQKQLKDEVLR 185

Query: 194 IEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHW 253
           IE DIM+ +AKAG NK+CELRK+LDEVSPKNFE++NK+L VKD+EI KLKDEIKIMSAHW
Sbjct: 186 IEHDIMEALAKAGENKNCELRKILDEVSPKNFEKMNKILGVKDDEIAKLKDEIKIMSAHW 245

Query: 254 KLKTKELESQ 263
           KLKTKELESQ
Sbjct: 246 KLKTKELESQ 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575301|ref|XP_003555780.1| PREDICTED: uncharacterized protein LOC100798343 [Glycine max]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 199/254 (78%), Positives = 222/254 (87%)

Query: 10  MSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET 69
           MS   SSS +S+ ARE DP+L+DLNEKKQSFR+NVVSLA ELKE+R+RLASQEQ + KET
Sbjct: 1   MSEKPSSSLTSIAAREADPVLQDLNEKKQSFRRNVVSLAVELKELRSRLASQEQSYAKET 60

Query: 70  LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATAD 129
           LTRQEAE  AKNME +I +LQK LEE+N +LQAS  +AEKYL +LD LR+QL AT+ATAD
Sbjct: 61  LTRQEAETNAKNMELQIGRLQKNLEEKNEQLQASTSSAEKYLKELDELRTQLVATRATAD 120

Query: 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189
           ASAASAQSAQLQCL LVKELDEKN SL+EHEDRV RLG+QLDNLQKDLQARESSQKQLKD
Sbjct: 121 ASAASAQSAQLQCLELVKELDEKNGSLREHEDRVLRLGEQLDNLQKDLQARESSQKQLKD 180

Query: 190 EVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIM 249
           EV RIE DIM+  AKAG NK+CELRK+LDEVSPKNFE++NKLL VKDEEI KLKDEIKIM
Sbjct: 181 EVLRIEHDIMEAFAKAGENKNCELRKILDEVSPKNFEKMNKLLGVKDEEIAKLKDEIKIM 240

Query: 250 SAHWKLKTKELESQ 263
           SA WKLKTK LESQ
Sbjct: 241 SAQWKLKTKGLESQ 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534981|ref|XP_003536028.1| PREDICTED: uncharacterized protein LOC100777398 isoform 1 [Glycine max]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 198/250 (79%), Positives = 224/250 (89%)

Query: 14  SSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQ 73
           SSS +S+V ARE+DPLL+DLNEKKQSFR+NVVSLA ELKE+R+RLASQEQ + KET TRQ
Sbjct: 6   SSSLTSTVAAREVDPLLQDLNEKKQSFRRNVVSLAVELKELRSRLASQEQSYAKETQTRQ 65

Query: 74  EAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAA 133
           EAE  AKNME +I +LQK LEERN +LQASA +AEKYL +LD LR+QL  T+ATADASAA
Sbjct: 66  EAETNAKNMELQIGRLQKNLEERNEQLQASASSAEKYLKELDDLRTQLVTTRATADASAA 125

Query: 134 SAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFR 193
           SAQSAQLQCL LVKEL+EKN SL+EHEDRV RLG+QLDNLQKDLQARESSQKQLKDEV R
Sbjct: 126 SAQSAQLQCLELVKELNEKNGSLREHEDRVLRLGEQLDNLQKDLQARESSQKQLKDEVLR 185

Query: 194 IEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHW 253
           IE DIM+ +AKAG NK+CELRK+LDEVSPKNFE++NK+L VKD+EI KLKDEIKIMSAHW
Sbjct: 186 IEHDIMEALAKAGENKNCELRKILDEVSPKNFEKMNKILGVKDDEIAKLKDEIKIMSAHW 245

Query: 254 KLKTKELESQ 263
           KLKTKELESQ
Sbjct: 246 KLKTKELESQ 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089842|emb|CBI39661.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (896), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 191/232 (82%), Positives = 211/232 (90%)

Query: 32  DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQK 91
           DLNEKKQSFRKNVVSLAAELKEVR RLASQEQ F KETL R+ +E KAK+ME+EI +LQK
Sbjct: 29  DLNEKKQSFRKNVVSLAAELKEVRGRLASQEQSFAKETLNRKASETKAKSMEEEIGRLQK 88

Query: 92  TLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE 151
           +LEERNG+LQASA T EKYL +LDGLRSQL+ T+ATADASAASAQSAQLQCLAL+KELDE
Sbjct: 89  SLEERNGQLQASAMTTEKYLQELDGLRSQLSFTQATADASAASAQSAQLQCLALIKELDE 148

Query: 152 KNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDC 211
           KN SLKEH DRV RLG+QLDNLQKDLQARE SQKQLKDEV RIE DIMQ +AKAG N+DC
Sbjct: 149 KNISLKEHGDRVNRLGEQLDNLQKDLQAREYSQKQLKDEVLRIEHDIMQAVAKAGANRDC 208

Query: 212 ELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQ 263
           ELRK+LDEVSPKNFE+INKLL+ KD+EI KLKDEI+IMSAHWKLKTKE+ESQ
Sbjct: 209 ELRKILDEVSPKNFEKINKLLIAKDDEIAKLKDEIRIMSAHWKLKTKEMESQ 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453990|ref|XP_004144739.1| PREDICTED: uncharacterized protein LOC101221548 [Cucumis sativus] gi|449490792|ref|XP_004158708.1| PREDICTED: uncharacterized LOC101221548 [Cucumis sativus]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/241 (76%), Positives = 214/241 (88%)

Query: 23  AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
           ARE+DPLLKDLNE+KQSFR+NVVSLAAELKE R+RL+SQEQ F KET TRQ +E KA  M
Sbjct: 16  AREVDPLLKDLNERKQSFRRNVVSLAAELKEARSRLSSQEQSFAKETQTRQASETKANIM 75

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
           E EI +L   LEER+G+L+ASA TA KYL +LDGLR QL AT+ATADASAASAQSAQ QC
Sbjct: 76  EQEIGRLHAELEERDGQLKASATTATKYLHELDGLRLQLVATQATADASAASAQSAQNQC 135

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
           L L+KELDEKN+S+KE+EDRV RLG+QLDNLQKDLQARESSQKQLKDEV R+E DI++ +
Sbjct: 136 LVLLKELDEKNTSIKEYEDRVKRLGEQLDNLQKDLQARESSQKQLKDEVMRVEHDILEAL 195

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
           AK+GV+KDCELRK+LDEVSP+N E+INKLL+ KDEEI KLK+EIK+MSAHWKLKTKELES
Sbjct: 196 AKSGVSKDCELRKILDEVSPRNLEKINKLLIAKDEEIAKLKNEIKMMSAHWKLKTKELES 255

Query: 263 Q 263
           Q
Sbjct: 256 Q 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812883|ref|XP_002874325.1| hypothetical protein ARALYDRAFT_326902 [Arabidopsis lyrata subsp. lyrata] gi|297320162|gb|EFH50584.1| hypothetical protein ARALYDRAFT_326902 [Arabidopsis lyrata subsp. lyrata]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/238 (69%), Positives = 200/238 (84%)

Query: 26  IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE 85
           +DPLLKDL+ KK+SFR+NVVS+AAELK+VR RL  QEQ FVKE+  R+EAE KAKNME E
Sbjct: 9   VDPLLKDLDGKKESFRRNVVSMAAELKQVRGRLVPQEQFFVKESFCRKEAEKKAKNMEME 68

Query: 86  ICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLAL 145
           ICKLQK LE+RN  L+AS   AEK+L ++D LRSQLA TK  A+ S ASAQSAQLQC  L
Sbjct: 69  ICKLQKKLEDRNCELEASTSAAEKFLEEVDDLRSQLALTKEIAETSTASAQSAQLQCSVL 128

Query: 146 VKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205
            ++LD+K  SL+EHEDRVT+LG QLDNLQ+DL+ RE SQKQL++EV RIE++I + +AK+
Sbjct: 129 TEQLDDKTRSLREHEDRVTQLGHQLDNLQRDLRTRECSQKQLREEVMRIEREITEAVAKS 188

Query: 206 GVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQ 263
           G   +CELRKLL+EVSPKNFER+NKLL VKDEEI KLKD++K+MSAHWKLKTKELESQ
Sbjct: 189 GKGTECELRKLLEEVSPKNFERMNKLLAVKDEEIAKLKDDVKLMSAHWKLKTKELESQ 246

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2148448	335	AT5G26770 "AT5G26770" [Arabido	0.875	0.710	0.617	5.9e-73
TAIR|locus:2012370	336	AT1G09470 "AT1G09470" [Arabido	0.919	0.744	0.504	2.1e-61
SGD|S000002366	538	GLE1 "Cytoplasmic nucleoporin	0.393	0.198	0.313	9.1e-07
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.893	0.237	0.191	2.3e-06
UNIPROTKB|Q5EE04	1997	TPR "TPR" [Xenopus laevis (tax	0.856	0.116	0.205	0.00037
UNIPROTKB|Q076A4	1939	MYH8 "Myosin-8" [Canis lupus f	0.841	0.118	0.213	8.3e-06
UNIPROTKB|Q076A5	1939	MYH4 "Myosin-4" [Canis lupus f	0.400	0.056	0.341	1.6e-05
MGI|MGI:1915428	1298	Cgnl1 "cingulin-like 1" [Mus m	0.904	0.189	0.209	2.7e-05
UNIPROTKB|Q9TV62	1937	MYH4 "Myosin-4" [Sus scrofa (t	0.400	0.056	0.341	3.1e-05
UNIPROTKB|F1N775	1937	MYH8 "Uncharacterized protein"	0.856	0.120	0.204	3.2e-05

TAIR|locus:2148448 AT5G26770 "AT5G26770" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 147/238 (61%), Positives = 178/238 (74%)

Query:    26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE 85
             +DPLLKDL+ KK+SFR+NVVS+AAELK+VR RL SQEQ FVKE+  R+EAE KAKNME E
Sbjct:     9 VDPLLKDLDGKKESFRRNVVSMAAELKQVRGRLVSQEQFFVKESFCRKEAEKKAKNMEME 68

Query:    86 ICKLQKTLEERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXXXXX 145
             ICKLQK LE+RN  L AS   AEK+L ++D LR                           
Sbjct:    69 ICKLQKKLEDRNCELVASTSAAEKFLEEVDDLRSQLALTKDIAETSAASAQSAQLQCSVL 128

Query:   146 VKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205
              ++LD+K  SL+EHEDRVT LG QLDNLQ+DL+ RE SQKQL++EV RIE++I + +AK+
Sbjct:   129 TEQLDDKTRSLREHEDRVTHLGHQLDNLQRDLKTRECSQKQLREEVMRIEREITEAVAKS 188

Query:   206 GVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQ 263
             G   +CELRKLL+EVSPKNFER+N LL VKDEEI KLKD++K+MSAHWKLKTKELESQ
Sbjct:   189 GKGTECELRKLLEEVSPKNFERMNMLLAVKDEEIAKLKDDVKLMSAHWKLKTKELESQ 246

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012370 AT1G09470 "AT1G09470" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 126/250 (50%), Positives = 171/250 (68%)

Query:    21 VPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAK 80
             V  RE DPLLKDL+EKKQSFR+NVVSLA ELKE RTRLA QE+   KE ++RQEAE + K
Sbjct:     5 VSLREDDPLLKDLSEKKQSFRRNVVSLATELKEARTRLAEQERSCSKEAMSRQEAETRVK 64

Query:    81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXX 140
              MEDE+ +L K L E+  +++AS    EK++ +L  ++                      
Sbjct:    65 RMEDEMHELAKELNEKVEQIRASDVATEKFVKELADIKSQLAATHATAEASALSAESAHS 124

Query:   141 XXXXXVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200
                   K+L E+  SLKEHED+VTRLG+QL+NL+K+L+ RESSQKQL+DE+ ++E DIM+
Sbjct:   125 HCRVLSKQLHERTGSLKEHEDQVTRLGEQLENLRKELRVRESSQKQLRDELLKVEGDIMR 184

Query:   201 TIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL 260
              ++     ++ E+R +L+E +PKN ERINKLL  KD+EI +L+DE+KI+SAHW+ KTKEL
Sbjct:   185 AVSVVKTKENSEVRNMLNEDTPKNSERINKLLTAKDDEIARLRDELKIISAHWRFKTKEL 244

Query:   261 ESQRSNGEQI 270
             E Q  N  +I
Sbjct:   245 EDQVENQRRI 254

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

SGD|S000002366 GLE1 "Cytoplasmic nucleoporin required for polyadenylated RNA export" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 99 (39.9 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
 Identities = 37/118 (31%), Positives = 59/118 (50%)

Query:   146 VKELDEKNSSLK-EHEDRVTRLGQQLDNLQKDLQARESSQKQL---KDEVFRIEQDIMQT 201
             ++E +EK   LK EHE    +L QQ D L K +   +   K     KD++ +I+QDI+  
Sbjct:   214 IEEQNEKERQLKKEHE---AKLLQQKDKLGKAVTNFDKISKMFWHYKDKIAQIKQDIVLP 270

Query:   202 IAKAGVNKDCELRKLLDEVSPK--NFERINKLLVVKDEEIHKLKDEIK--IMSAHWKL 255
             I KA VN    L +   +++PK       N+ L     E+ +L ++ K   ++ HW L
Sbjct:   271 IKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWIL 328

GO:0016021 "integral to membrane" evidence=ISM

GO:0005643 "nuclear pore" evidence=IEA;IDA

GO:0006406 "mRNA export from nucleus" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0051028 "mRNA transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IMP

GO:0006449 "regulation of translational termination" evidence=IMP

GO:0044614 "nuclear pore cytoplasmic filaments" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=IGI;IMP;IDA

GO:0031369 "translation initiation factor binding" evidence=IPI

GO:0000822 "inositol hexakisphosphate binding" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA;IMP

GO:0005543 "phospholipid binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 48/251 (19%), Positives = 113/251 (45%)

Query:    27 DPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCF--VKETLTRQEAEMKAKNMED 84
             D  LK  +E+  +    + S+ ++L+ V+ +L+S++Q     K+ L+ ++ ++  K+ + 
Sbjct:   654 DSELKSKDEQLSNKDSQIKSIESDLQSVKDQLSSKDQELQSTKDQLSSKDEQLSNKDTQI 713

Query:    85 EICK--LQKTLEERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXX 142
             +  +  LQ   ++ + + Q    T ++ L   D                           
Sbjct:   714 KSIESDLQSVKDQLSSKDQELQSTKDQ-LSSKDQELQSTKDQLSTKDQELQSAKDQLSCQ 772

Query:   143 XXXVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
                  +L  K++ L+  +D+++    +L +++  L  ++S  +  KD++   + ++ Q+I
Sbjct:   773 SSTTDQLSAKDTELQSTKDQLSSKDSELQSIKDQLSTKDSELQSSKDQLSSKDSEL-QSI 831

Query:   203 AKAGVNKDCELRKLLDEVSPKN--FERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL 260
                  +KD +L+ + D++S K+   +     L  KD+E+  +KDE+       +  T + 
Sbjct:   832 KDQLSSKDSDLQSVKDQLSSKDSDLQSTKDQLSSKDQELQSVKDELTSKDQELQQITSKQ 891

Query:   261 ESQRSNGEQIR 271
               Q S   QI+
Sbjct:   892 SEQDSKVSQIQ 902

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5EE04 TPR "TPR" [Xenopus laevis (taxid:8355)]

 Score = 121 (47.7 bits), Expect = 0.00037, P = 0.00037
 Identities = 51/248 (20%), Positives = 109/248 (43%)

Query:    24 REIDPL-LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
             RE++   ++ L E+    +  V    A L   +++L S     VK+ LT+ +AE K K  
Sbjct:  1033 REVNTKRIQQLTEETGKLKTEVARTNASLNTCQSQLQS-----VKDDLTKIKAE-KEKLQ 1086

Query:    83 EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXX 142
             ++   K+   ++E+   +        +Y  Q + L+                        
Sbjct:  1087 KELDAKILD-IQEKIKTITQVKKIGRRYKTQYEELKVTHDKMVAEASSAKADQLQEQASQ 1145

Query:   143 XXXVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
                 KE+ E   SL+  E +VT +   +DN+QK L  +++  K+ ++++ R++ ++   +
Sbjct:  1146 ----KEVQELKDSLQRSEAKVTTMQTTVDNMQKTLDDKDNEIKEHQEQISRMQAELSH-L 1200

Query:   203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDE--EIHKLKDEIKIMSAHWKLKTKEL 260
              K   +K  +  ++  +++ K  +    LLVV+ +  + +  K+++   +   K K   L
Sbjct:  1201 HKDLQDKTAQEEQMRQQINEKEEKTKKTLLVVRQKLAQNNGAKEQLTRENEDLKQKNANL 1260

Query:   261 ESQRSNGE 268
             E Q+   E
Sbjct:  1261 EQQKEELE 1268

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0000189 "MAPK import into nucleus" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS

GO:0005643 "nuclear pore" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0006404 "RNA import into nucleus" evidence=ISS

GO:0006405 "RNA export from nucleus" evidence=ISS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=ISS

GO:0010965 "regulation of mitotic sister chromatid separation" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISS

GO:0031453 "positive regulation of heterochromatin assembly" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS;IDA

GO:0031990 "mRNA export from nucleus in response to heat stress" evidence=ISS

GO:0034399 "nuclear periphery" evidence=IDA

GO:0034605 "cellular response to heat" evidence=ISS

GO:0042307 "positive regulation of protein import into nucleus" evidence=ISS

GO:0042405 "nuclear inclusion body" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0044615 "nuclear pore nuclear basket" evidence=IDA

GO:0045947 "negative regulation of translational initiation" evidence=ISS

GO:0046827 "positive regulation of protein export from nucleus" evidence=ISS

GO:0046832 "negative regulation of RNA export from nucleus" evidence=ISS

GO:0051019 "mitogen-activated protein kinase binding" evidence=ISS

GO:0070849 "response to epidermal growth factor stimulus" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0090267 "positive regulation of mitotic cell cycle spindle assembly checkpoint" evidence=ISS

GO:0090316 "positive regulation of intracellular protein transport" evidence=ISS

GO:1901673 "regulation of spindle assembly involved in mitosis" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0006606 "protein import into nucleus" evidence=ISS

GO:0006611 "protein export from nucleus" evidence=ISS

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0031647 "regulation of protein stability" evidence=ISS

GO:0042306 "regulation of protein import into nucleus" evidence=ISS

GO:0043495 "protein anchor" evidence=ISS

GO:0043578 "nuclear matrix organization" evidence=ISS

GO:0051292 "nuclear pore complex assembly" evidence=ISS

UNIPROTKB|Q076A4 MYH8 "Myosin-8" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 51/239 (21%), Positives = 110/239 (46%)

Query:    30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89
             L D  E+ +   KN + L A++KEV  R   +E+   + T  +++ E +   ++ +I  L
Sbjct:   903 LADAEERCEQLIKNKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDL 962

Query:    90 QKTLEERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXXXXXVKEL 149
             + TL +      A+    +    ++ GL                              E 
Sbjct:   963 ELTLAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQA---EE 1019

Query:   150 DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNK 209
             D+ N+  K      T+L QQ+D+L+  L+     +  L+    ++E D+ +   ++ ++ 
Sbjct:  1020 DKVNTLTKAK----TKLEQQVDDLEGSLEQERKLRMDLERAKRKLEGDL-KLAQESTMDA 1074

Query:   210 DCELRKLLDEVSPKNFERINKLLVVKDEE-IH-KLKDEIKIMSAHWKLKTKELESQRSN 266
             + + ++L +++  K FE  N L  ++DE+ I  +L+ +IK + A  +   +E+E++R++
Sbjct:  1075 ENDKQQLDEKLKKKEFEISNLLSKIEDEQAIEIQLQKKIKELQARIEELEEEIEAERAS 1133

GO:0030016 "myofibril" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q076A5 MYH4 "Myosin-4" [Canis lupus familiaris (taxid:9615)]

 Score = 124 (48.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 40/117 (34%), Positives = 62/117 (52%)

Query:   157 KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKL 216
             K+H D V  LG+Q+DNLQ+  Q  E  + +LK E+  +  + M+T++KA  N +   R L
Sbjct:  1198 KKHADSVAELGEQIDNLQRVKQKLEKEKSELKMEIDDLASN-METVSKAKGNLEKTCRTL 1256

Query:   217 LDEVSP-KNFERINKLLVVKDEEIHKLKDEIKIMSAHW--KLKTKE-LESQRSNGEQ 269
              D++S  K  E   + L+    E+   K  +   S  +  +L  KE L SQ S G+Q
Sbjct:  1257 EDQLSEVKTKEEEQQRLI---NELSAQKARLHTESGEFSRQLDEKEALVSQLSRGKQ 1310

GO:0030016 "myofibril" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

MGI|MGI:1915428 Cgnl1 "cingulin-like 1" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 54/258 (20%), Positives = 111/258 (43%)

Query:    24 REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQ----CFVKETLTRQEAEM-- 77
             +E+D L +  + + Q+FR++V      ++ + +R  S EQ      ++E + ++E E   
Sbjct:   773 QEMDKLKEQYDAELQAFRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQ 832

Query:    78 -KAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXX 136
              +   +E    +LQ+ +E+  G    +  T  K   ++  L                   
Sbjct:   833 GRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARR 892

Query:   137 XXXXXXXXXVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQ 196
                       +EL + +   KE  +++    +Q + L+K     ES +  L   + ++++
Sbjct:   893 ALEKELEQAQRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIQKLQK 952

Query:   197 DIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLV-VKDE--EIHKLKDEIKIMSAHW 253
             + M  IA+A      EL+K L E   KN   + ++   +K++  E+ K +     M    
Sbjct:   953 E-MADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDEL 1011

Query:   254 KLKTKELES-QRSNGEQI 270
             +LK +EL+  QR+  E +
Sbjct:  1012 RLKEEELQDYQRAEEEAL 1029

GO:0003674 "molecular_function" evidence=ND

GO:0003774 "motor activity" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0043296 "apical junction complex" evidence=IDA

UNIPROTKB|Q9TV62 MYH4 "Myosin-4" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 40/117 (34%), Positives = 64/117 (54%)

Query:   157 KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKL 216
             K+H D V  LG+Q+DNLQ+  Q  E  + +LK E+  +  + M+T++KA  N +   R L
Sbjct:  1196 KKHADSVAELGEQIDNLQRVKQKLEKEKSELKMEIDDLASN-METVSKAKGNLEKMCRTL 1254

Query:   217 LDEVSP-KNFERINKLLVVKDEEIHKLKDEIKIMSAHW--KLKTKE-LESQRSNGEQ 269
              D++S  K  E  ++ L+    E+   K  ++  S  +  +L  KE L SQ S G+Q
Sbjct:  1255 EDQLSEVKTKEEEHQRLI---NELSAQKARLQTESGEFSRQLDEKEALVSQLSRGKQ 1308

GO:0030016 "myofibril" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1N775 MYH8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 130 (50.8 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 51/250 (20%), Positives = 112/250 (44%)

Query:    30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89
             L D  E+ +   KN + L A++KEV  R   +E+          E   K + +EDE  +L
Sbjct:   901 LADAEERCEQLIKNKIQLEAKIKEVTERAEDEEEM-------NAELTAKKRKLEDECAEL 953

Query:    90 QKTLEERNGRLQASACTAEKYLMQ--LDGLRXXXXXXXXXXXXXXXXXXXXXXXXXXXVK 147
             +K +++    L  +    EK+  +  +  L                            + 
Sbjct:   954 KKDIDDLE--LTLAKVEKEKHATENKVKNLTEEMAGLDEVIAKLTKEKKALQEAHQQTLD 1011

Query:   148 ELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGV 207
             +L  +   +        +L QQ+D+L+  L+  +  +  L+    ++E D+ +   ++ V
Sbjct:  1012 DLQAEEDKVNTLNKAKAKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDL-KLAQESMV 1070

Query:   208 NKDCELRKLLDEVSPKNFERINKLLVVKDEEIHK--LKDEIKIMSAHWKLKTKELESQRS 265
             + + + ++L +++  K FE  N L  ++DE+  +  L+ +IK + A  +   +E+E++R+
Sbjct:  1071 DIENDKQQLDEKLKKKEFEISNLLSKIEDEQAVEIQLQKKIKELQARIEELEEEIEAERA 1130

Query:   266 N---GEQIRN 272
             +    E++R+
Sbjct:  1131 SRAKAEKLRS 1140

GO:0016459 "myosin complex" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01310035 hypothetical protein (344 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.003

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 8/239 (3%)

Query: 30  LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKA-------KNM 82
           L++L E+ +  ++ +     EL+E+   L   E+   +  L   E E +          +
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
            +EI +L++  +    RL       E+   QL+ L S+L              +  + + 
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
            +L  EL+E  + L+E E R+  L +QL+ L+  +   E     L +E+ R+E  + + +
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER-L 412

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE 261
                    E+ +LL ++     + +   L   +EE+ +L++E++ +    +   +ELE
Sbjct: 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 47/232 (20%), Positives = 103/232 (44%), Gaps = 7/232 (3%)

Query: 25  EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMED 84
           ++   L++L E+ +   + +  L   L+E+   L S E+   K     +E E K + +++
Sbjct: 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQE 793

Query: 85  EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA 144
           E+ +L++ LEE   RL A     E    + + L  ++   +   +         + +   
Sbjct: 794 ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEE 853

Query: 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK 204
           L KEL+E    L+E E     L  +L  L+++ +  E   ++L+ E+  ++++I +   +
Sbjct: 854 LEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRER 913

Query: 205 AGVNKDCELRKLLDEVSPKNFERINKLLVVKDE-----EIHKLKDEIKIMSA 251
               +     + L+   P+  E + +      E     EI +L++EI+ +  
Sbjct: 914 L--EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGP 963

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 7/176 (3%)

Query: 30  LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVK-----ETLTRQ--EAEMKAKNM 82
           +++L EK +   + +  L   L E+R  L   E+   +     E L+RQ          +
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
           E E+ +L++ + + +  L       E+   +L+    +LA  +A  +   A  +  + + 
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198
            AL + LDE  + L    +    L ++L++L++ + A E   + L++++  + +DI
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 42/242 (17%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 24  REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNME 83
            E+   L++L  + +  ++ + +L  EL+++++RL   E+   +     +E + + + +E
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764

Query: 84  DEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCL 143
           +E+  L++ L +    ++      +    +L+ L  +L   +   DA     +S + +  
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 144 ALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIA 203
            L +E++E    ++E E+++  L ++L+ L+K+L+  +   ++L+ E   +E ++ +   
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884

Query: 204 KAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQ 263
           +       EL + L E+       + + +    E + +L+ +++ +        +ELE +
Sbjct: 885 EKE-----ELEEELRELE-SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938

Query: 264 RS 265
             
Sbjct: 939 YE 940

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 45/243 (18%), Positives = 104/243 (42%), Gaps = 37/243 (15%)

Query: 30  LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89
           L++L E+ +   K +  L +EL+E+R  L   ++  ++     +E E +   + + + +L
Sbjct: 255 LEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEEL 314

Query: 90  QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL 149
           +  LEE            E+ L +L      L       +      +    +     +EL
Sbjct: 315 ENELEE-----------LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363

Query: 150 DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNK 209
           +EK S+L E  + +       + L+++L   E+   ++++E+  +++             
Sbjct: 364 EEKLSALLEELEEL------FEALREELAELEAELAEIRNELEELKR------------- 404

Query: 210 DCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQRSNGEQ 269
             E+  L + +     ER+++ L    EE+ +L+ E++ +    +   +ELE      E+
Sbjct: 405 --EIESLEERL-----ERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEE 457

Query: 270 IRN 272
           +R+
Sbjct: 458 LRD 460

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 37/223 (16%), Positives = 83/223 (37%), Gaps = 12/223 (5%)

Query: 25  EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMED 84
           E +  L +   + +     +  L  ELK +R  L                   + +++E 
Sbjct: 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831

Query: 85  EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA 144
            I   ++ LE+   +++  +   E    +++ L   +   ++  +A      S +     
Sbjct: 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891

Query: 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK 204
           L  EL+E +  L+E E + + L ++L+ L++          QL+  +  +E  I     +
Sbjct: 892 LRSELEELSEELRELESKRSELRRELEELRE-------KLAQLELRLEGLEVRIDNLQER 944

Query: 205 AGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247
                  E   L  E +     +I          + +L+++IK
Sbjct: 945 LS-----EEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 48/243 (19%), Positives = 107/243 (44%), Gaps = 13/243 (5%)

Query: 30  LKDLNEKKQSFRKNVVSLAAELKEVRTR---LASQEQCFVKETLTRQEAEMKAKNMEDEI 86
           L+ L E+     K +  +   L+E+  +   L  +EQ  VKE +   EAE+   ++E  I
Sbjct: 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA--SLERSI 310

Query: 87  CKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALV 146
            + ++ LE+   RL       +K L +++ L  ++   +   D         + +   L 
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370

Query: 147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ-----T 201
            EL+E +    E  D +    ++L+ L++++   +    +L++E+ R+ +++        
Sbjct: 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430

Query: 202 IAKAGVNK-DCELRKLLDEVSPK--NFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTK 258
             +A +N+ + E      E+  +    E++   L   ++E++ LK+E   +        +
Sbjct: 431 GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490

Query: 259 ELE 261
           EL 
Sbjct: 491 ELA 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 38/194 (19%), Positives = 89/194 (45%), Gaps = 12/194 (6%)

Query: 29  LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVK-----ETLTRQEAEMKAKNME 83
            L++L E   S  + + ++ +ELKE+  R+   E+   K       L  + +  +   ++
Sbjct: 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ 797

Query: 84  DEICKLQKTLEERNGRLQA-----SACTAEKYLMQ--LDGLRSQLAATKATADASAASAQ 136
            E+ KL++ +     RL+      +  T EK  ++  +  L+ Q    K    +     +
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

Query: 137 SAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQ 196
           +   +   L +EL+E  ++L++ E R+  L ++ D L+  L+  E   ++L+ ++ +  +
Sbjct: 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917

Query: 197 DIMQTIAKAGVNKD 210
            + +  AK    ++
Sbjct: 918 RLSELKAKLEALEE 931

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)

Query: 41  RKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100
           R+ V  L AEL+++   +       V+E L R E        ED I +L++  E+    +
Sbjct: 474 RERVEELEAELEDLEEEVEE-----VEERLERAED---LVEAEDRIERLEERREDLEELI 525

Query: 101 QASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQ---CLALVKELDEKNSSLK 157
                T E+   + + LR + A  +A A+    +A  A+ +       V EL+ K + LK
Sbjct: 526 AERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELK 585

Query: 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189
           E  + + R+   L  +       E  +++ + 
Sbjct: 586 ERIESLERIRTLLAAIADAEDEIERLREKREA 617

Length = 880

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 43  NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA 102
            V+ L AE+  +R    SQ      + L   E     + ++ +    +        +L+ 
Sbjct: 89  QVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLEL 148

Query: 103 SACTAEKYLMQLDGLRSQLAATKATADASAASAQS----------AQLQCLALVKELDEK 152
                ++   +L GL++QL A +   +  +   ++          ++L+ L L +E  E 
Sbjct: 149 ILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEA 208

Query: 153 NSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQ 186
              L   E  +  L +Q+D LQ + Q  E + ++
Sbjct: 209 QGELGRLEAELEVLKRQIDELQLERQQIEQTFRE 242

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.64
PRK02224	880	chromosome segregation protein; Provisional	97.35
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.19
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.8
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.78
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.6
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	96.04
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.75
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.21
PRK02224	880	chromosome segregation protein; Provisional	95.03
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	94.72
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	94.72
PRK04778	569	septation ring formation regulator EzrA; Provision	93.57
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.27
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	92.52
PRK04778	569	septation ring formation regulator EzrA; Provision	92.45
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	91.88
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.7
PRK09039	343	hypothetical protein; Validated	91.49
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	91.47
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.05
PF15294	278	Leu_zip: Leucine zipper	90.47
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.86
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.66
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	89.38
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	89.26
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	89.05
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	88.93
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	88.72
PRK04863	1486	mukB cell division protein MukB; Provisional	88.46
PRK11637	428	AmiB activator; Provisional	87.76
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	87.68
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.55
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.51
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	85.98
PRK04863	1486	mukB cell division protein MukB; Provisional	84.55
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	84.42
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	83.23
KOG0996	1293	consensus Structural maintenance of chromosome pro	82.73
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.47
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	81.3
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	80.7
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	80.44

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.64  E-value=0.0067  Score=67.76  Aligned_cols=194  Identities=25%  Similarity=0.363  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhH
Q 024148           42 KNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL  121 (272)
Q Consensus        42 rnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQL  121 (272)
                      ..|.-+-..+++...+++.-++.+..|=-+|..+|..-+-++.|+..|++.|++..+...+-....-+.-.|+..||..|
T Consensus      1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555666666667777888888899999999999999999999999998888888888888889999999988


Q ss_pred             HHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 024148          122 AATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT  201 (272)
Q Consensus       122 s~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~A  201 (272)
                      .-..-+-++..+...                    +.|.+.|..+++|++++++.-+-.+--...|.-++..++..+=..
T Consensus      1170 eee~~~~e~~~~~lr--------------------~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~ 1229 (1930)
T KOG0161|consen 1170 EEETLDHEAQIEELR--------------------KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQL 1229 (1930)
T ss_pred             HHHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            765544443333221                    889999999999999999998888777777777777666655421


Q ss_pred             HHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhhccchhhhhHHhhh
Q 024148          202 IAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQRS  265 (272)
Q Consensus       202 vakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaHW~~KTKELEsQle  265 (272)
                      . ++  +.+.|.+-       +-+|.-+.-|..|++++.++..+|..-..--.+...+|.+|++
T Consensus      1230 ~-~~--k~~~e~~~-------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~le 1283 (1930)
T KOG0161|consen 1230 S-SE--KKDLEKKD-------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLE 1283 (1930)
T ss_pred             h-hh--hccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhH
Confidence            1 22  22222222       3444555567778888888877755444444444555555554

>PRK02224 chromosome segregation protein; Provisional

Probab=97.35  E-value=0.097  Score=52.08  Aligned_cols=132  Identities=18%  Similarity=0.246  Sum_probs=88.2

Q ss_pred             CCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhh
Q 024148           21 VPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL  100 (272)
Q Consensus        21 ~~~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL  100 (272)
                      +...++-.++.++.++.......+-.|..++.+++.++...+.....        +.....++.....+...++++.+++
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~--------~~~l~~l~~~~~~l~~~~~~~~e~l  532 (880)
T PRK02224        461 VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA--------EDRIERLEERREDLEELIAERRETI  532 (880)
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444447888888888888888889999999998888876665322        3333445555555555677777777


Q ss_pred             hhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhh
Q 024148          101 QASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHE  160 (272)
Q Consensus       101 ~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE  160 (272)
                      ..-....+.+-.++..|++.+.-....++.--..+..+.--+..+-+++++-.+-+++.+
T Consensus       533 e~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le  592 (880)
T PRK02224        533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE  592 (880)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777888888888888766665554444444444456666666666555555555

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.19  E-value=0.28  Score=48.43  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=12.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024148           30 LKDLNEKKQSFRKNVVSLAAELKEVRTRL   58 (272)
Q Consensus        30 LkDL~EKK~sfRrnvvsLaaELK~~R~rL   58 (272)
                      +.+|......++.-+..+-.+++.++..+
T Consensus       679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l  707 (1179)
T TIGR02168       679 IEELEEKIEELEEKIAELEKALAELRKEL  707 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.80  E-value=0.62  Score=46.07  Aligned_cols=70  Identities=17%  Similarity=0.293  Sum_probs=38.6

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhh
Q 024148           26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEE   95 (272)
Q Consensus        26 lDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Lee   95 (272)
                      +..-+.++..+-..++..+..+.+++.+++..+...+.....-.......+.....++.++..+...+..
T Consensus       682 l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~  751 (1179)
T TIGR02168       682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ  751 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777777777777777777777777665544443332222233344444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.78  E-value=0.56  Score=49.47  Aligned_cols=14  Identities=14%  Similarity=0.197  Sum_probs=7.8

Q ss_pred             hccchhhhhHHhhh
Q 024148          252 HWKLKTKELESQRS  265 (272)
Q Consensus       252 HW~~KTKELEsQle  265 (272)
                      -|+.+.+.++.+++
T Consensus       946 ~~~~~i~~le~~i~  959 (1163)
T COG1196         946 ELEREIERLEEEIE  959 (1163)
T ss_pred             HHHHHHHHHHHHHH
Confidence            35666666655543

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.60  E-value=0.41  Score=48.36  Aligned_cols=127  Identities=22%  Similarity=0.231  Sum_probs=89.2

Q ss_pred             CCCCCCccccchhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHH-
Q 024148           17 SSSSVPAREIDPLLKDL---NEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKT-   92 (272)
Q Consensus        17 ~sss~~~~elDPLLkDL---~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~-   92 (272)
                      ....+|..|+--+.+.|   .-.+-.|..++--|-.|++++|.++...++...-.=..-...+.+.-..|.|++-+... 
T Consensus        85 ~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~  164 (546)
T KOG0977|consen   85 GIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRI  164 (546)
T ss_pred             chhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence            34456666665554444   44788999999999999999999999998877654444455666777777777766543 


Q ss_pred             --HhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhh
Q 024148           93 --LEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKN  153 (272)
Q Consensus        93 --Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~  153 (272)
                        |+|...-|          ..|.+.||.+|..++.--++-...-.-.|.+|-.|+.+|+-..
T Consensus       165 ~~le~e~~~L----------k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  165 KALEDELKRL----------KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence              33333333          3566777777777777666666667778899999999887644

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=96.04  E-value=0.053  Score=50.60  Aligned_cols=87  Identities=26%  Similarity=0.394  Sum_probs=62.4

Q ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhh
Q 024148           23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA  102 (272)
Q Consensus        23 ~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~a  102 (272)
                      .+++=+-|+++-|   .||+.+|+-| -|-.=++.|.-|=..+-          .+.-.||+.+..+++.+.+|...+..
T Consensus        79 ~r~lk~~l~evEe---kyrkAMv~na-QLDNek~~l~yqvd~Lk----------d~lee~eE~~~~~~re~~eK~~elEr  144 (302)
T PF09738_consen   79 LRDLKDSLAEVEE---KYRKAMVSNA-QLDNEKSALMYQVDLLK----------DKLEELEETLAQLQREYREKIRELER  144 (302)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHh-hhchHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444   5999999876 36555666655544443          33446999999999999999988887


Q ss_pred             hhhhHHHHHHHhhhHhhhHHH
Q 024148          103 SACTAEKYLMQLDGLRSQLAA  123 (272)
Q Consensus       103 s~~stEkyl~eLD~lRSQLs~  123 (272)
                      ---.....-.|+|.||.+|..
T Consensus       145 ~K~~~d~L~~e~~~Lre~L~~  165 (302)
T PF09738_consen  145 QKRAHDSLREELDELREQLKQ  165 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777777777899999999863

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.75  E-value=1.3  Score=39.02  Aligned_cols=76  Identities=24%  Similarity=0.370  Sum_probs=43.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--------------hhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHh
Q 024148           29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRL--------------ASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE   94 (272)
Q Consensus        29 LLkDL~EKK~sfRrnvvsLaaELK~~R~rL--------------asQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Le   94 (272)
                      .|.+++.-|-.+--.+-.+-.|+.+.|.|+              ..--..+-.++..|-..+.+..++.+|+.-+.+--+
T Consensus        62 ~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he  141 (312)
T PF00038_consen   62 QIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE  141 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence            344444444444444444445555555444              333445566777777777777777777777766666


Q ss_pred             hhhhhhhhhh
Q 024148           95 ERNGRLQASA  104 (272)
Q Consensus        95 ek~eQL~as~  104 (272)
                      +....|++..
T Consensus       142 eEi~~L~~~~  151 (312)
T PF00038_consen  142 EEIEELREQI  151 (312)
T ss_dssp             HHHHTTSTT-
T ss_pred             hhhhhhhhcc
Confidence            5555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.21  E-value=5.2  Score=42.51  Aligned_cols=60  Identities=23%  Similarity=0.317  Sum_probs=41.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHH
Q 024148           28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEIC   87 (272)
Q Consensus        28 PLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~   87 (272)
                      +-|..|.++-...+..+..+-.+++++.+.+..-+.....-......+.........++.
T Consensus       667 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (1163)
T COG1196         667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA  726 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355578888888888888888888888888887777776666555555554333333333

>PRK02224 chromosome segregation protein; Provisional

Probab=95.03  E-value=4.4  Score=40.69  Aligned_cols=18  Identities=33%  Similarity=0.647  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHhhhhhhhh
Q 024148           46 SLAAELKEVRTRLASQEQ   63 (272)
Q Consensus        46 sLaaELK~~R~rLasQEq   63 (272)
                      .+..+++....++...+.
T Consensus       255 ~l~~~~~~l~~~i~~~e~  272 (880)
T PRK02224        255 TLEAEIEDLRETIAETER  272 (880)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444444444333

>TIGR00606 rad50 rad50

Probab=94.72  E-value=7.4  Score=41.85  Aligned_cols=86  Identities=12%  Similarity=0.240  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhch------HHHHHHHHHHHhhhhhhhhhhhh--hHHHH
Q 024148           39 SFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM------EDEICKLQKTLEERNGRLQASAC--TAEKY  110 (272)
Q Consensus        39 sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~M------E~Ei~kLqK~Leek~eQL~as~~--stEky  110 (272)
                      .++..+..+-.++.+++..|...+..+.+-....+.++.-.+.|      ..||..+++.+++-...+..+.+  +.+..
T Consensus       748 ~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~el  827 (1311)
T TIGR00606       748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQV  827 (1311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHH
Confidence            34455555555555555555555555555444444443333333      55666666666655444443332  23334


Q ss_pred             HHHhhhHhhhHHHH
Q 024148          111 LMQLDGLRSQLAAT  124 (272)
Q Consensus       111 l~eLD~lRSQLs~T  124 (272)
                      -.+++.+..++..+
T Consensus       828 e~ei~~~~~el~~l  841 (1311)
T TIGR00606       828 NQEKQEKQHELDTV  841 (1311)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=94.72  E-value=7.4  Score=41.85  Aligned_cols=51  Identities=18%  Similarity=0.152  Sum_probs=27.9

Q ss_pred             HHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHH
Q 024148           72 RQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA  122 (272)
Q Consensus        72 Rk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs  122 (272)
                      |...+.....+..++..+...+.+.+.++..-...-++...+++.+|.+..
T Consensus       883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  933 (1311)
T TIGR00606       883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE  933 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            344555555566666666666666555555555555555555555554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=93.57  E-value=8.2  Score=38.03  Aligned_cols=183  Identities=20%  Similarity=0.302  Sum_probs=102.9

Q ss_pred             HhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhh----------HHHHHHHhhhHhhhHHHH
Q 024148           55 RTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACT----------AEKYLMQLDGLRSQLAAT  124 (272)
Q Consensus        55 R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~s----------tEkyl~eLD~lRSQLs~T  124 (272)
                      -.++..---.|.+|-..++.+++....++.-+..+.+...+-...+.--.-+          ..++-.+|..+..++...
T Consensus       288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~  367 (569)
T PRK04778        288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEI  367 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444457889999999999999988888888777555444333332222          555667788888777754


Q ss_pred             HHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHH-hhhhhhHHHHHHHHH-----------
Q 024148          125 KATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL-QARESSQKQLKDEVF-----------  192 (272)
Q Consensus       125 qATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~L-qaRE~SQkQLKDeVl-----------  192 (272)
                      .......+.+-...+-.+-.+.++|+       +=+.....+.+.+..|.++- .+|+- -..++..+-           
T Consensus       368 ~~~i~~~~~~ysel~e~leel~e~le-------eie~eq~ei~e~l~~Lrk~E~eAr~k-L~~~~~~L~~ikr~l~k~~l  439 (569)
T PRK04778        368 TERIAEQEIAYSELQEELEEILKQLE-------EIEKEQEKLSEMLQGLRKDELEAREK-LERYRNKLHEIKRYLEKSNL  439 (569)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence            44443333333333334444443333       33333333333333333322 11111 112222211           


Q ss_pred             -HHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhH
Q 024148          193 -RIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK  247 (272)
Q Consensus       193 -riE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeir  247 (272)
                       .|..+.++.+..+ ...--.|.+-|+. .|=|.+.|++.+..-.+.+..|.++..
T Consensus       440 pgip~~y~~~~~~~-~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~  493 (569)
T PRK04778        440 PGLPEDYLEMFFEV-SDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETE  493 (569)
T ss_pred             CCCcHHHHHHHHHH-HHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2344566666433 4455567788888 999999999777766677777776654

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.27  E-value=7.3  Score=40.26  Aligned_cols=72  Identities=22%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHH----------------------HHHhhchHHHHHHHHHHH
Q 024148           36 KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEA----------------------EMKAKNMEDEICKLQKTL   93 (272)
Q Consensus        36 KK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~a----------------------E~kak~ME~Ei~kLqK~L   93 (272)
                      -|+.=|.++.+|---|++-|..-++-|..+..|--.|+.+                      ..|.+.||.|+.+|+..|
T Consensus       482 aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~el  561 (697)
T PF09726_consen  482 ARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRREL  561 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555566666666666666665566666666665555433                      235567888888888888


Q ss_pred             hhhhhhhhhhhhhH
Q 024148           94 EERNGRLQASACTA  107 (272)
Q Consensus        94 eek~eQL~as~~st  107 (272)
                      ..+.+|++.--...
T Consensus       562 k~kee~~~~~e~~~  575 (697)
T PF09726_consen  562 KQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888877655444

; GO: 0016021 integral to membrane

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=92.52  E-value=2.7  Score=37.19  Aligned_cols=93  Identities=28%  Similarity=0.406  Sum_probs=74.3

Q ss_pred             hchHHHHHHHHHHHhhhhhhhhhhhhhHH-------HHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhh
Q 024148           80 KNMEDEICKLQKTLEERNGRLQASACTAE-------KYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEK  152 (272)
Q Consensus        80 k~ME~Ei~kLqK~Leek~eQL~as~~stE-------kyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK  152 (272)
                      ..+|.||+..+.-+++-..+|..+-+...       +-..++..|+.-|-.++.+.+..-..+..+|       .+|.+|
T Consensus        70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ-------~el~eK  142 (188)
T PF05335_consen   70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQ-------QELAEK  142 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence            46788899888888888888877655444       3556777777777777777766666666665       578999


Q ss_pred             hchhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148          153 NSSLKEHEDRVTRLGQQLDNLQKDLQA  179 (272)
Q Consensus       153 ~~sLkEhE~rV~~lgeQLd~LqK~Lqa  179 (272)
                      +..|..=..||..|..||.....|++.
T Consensus       143 ~qLLeaAk~Rve~L~~QL~~Ar~D~~~  169 (188)
T PF05335_consen  143 TQLLEAAKRRVEELQRQLQAARADYEK  169 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999874

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=92.45  E-value=12  Score=36.92  Aligned_cols=200  Identities=21%  Similarity=0.270  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHH
Q 024148           45 VSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAAT  124 (272)
Q Consensus        45 vsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~T  124 (272)
                      +.+..+++..+.++..=......  ..=+.|+.+...+++.|..|...|+--..--........++-..|+.++.+...+
T Consensus       252 ~~i~~~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l  329 (569)
T PRK04778        252 LDIEKEIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKEL  329 (569)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45666777776666553322221  1115567777777777777766665433322222222222223333333333322


Q ss_pred             HHhhHhhHHh----------HHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHH
Q 024148          125 KATADASAAS----------AQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI  194 (272)
Q Consensus       125 qATAeaSAaS----------AqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlri  194 (272)
                      ..--+--..|          ....+=+.-.+-+.+.+-...+.++......+.++++.+.+.+..=+-.|..+++.+-.+
T Consensus       330 ~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~L  409 (569)
T PRK04778        330 KEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGL  409 (569)
T ss_pred             HHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222          344444555555665555566667777777788888888888888888899999999999


Q ss_pred             HHHHHHHHHHhcC--CchhHHHHhhhc-cCcchHHhhhhhhccchhHhhhhhhhh
Q 024148          195 EQDIMQTIAKAGV--NKDCELRKLLDE-VSPKNFERINKLLVVKDEEIHKLKDEI  246 (272)
Q Consensus       195 E~dIm~Avakag~--~~d~El~kil~e-vspkn~e~inkll~~kD~eIakLrdei  246 (272)
                      ..+..+|-.+...  .+-.++...+.. --|.--+.+-..+..-.++|.+|..+|
T Consensus       410 rk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L  464 (569)
T PRK04778        410 RKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEEL  464 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988766542  222233322222 133333333334444456666666554

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=91.88  E-value=25  Score=39.40  Aligned_cols=195  Identities=25%  Similarity=0.273  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHH-----hhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHH-------HHh
Q 024148           47 LAAELKEVRTRLASQEQCFVKET-----LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYL-------MQL  114 (272)
Q Consensus        47 LaaELK~~R~rLasQEq~~akEt-----~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl-------~eL  114 (272)
                      +.+||.++..+|.++++.+-++=     ..-++++.++.--|++..+|...+.++.++|.-    +.++.       ..+
T Consensus       466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~----~q~~~~~~~~~~~kv  541 (1317)
T KOG0612|consen  466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELED----AQKKNDNAADSLEKV  541 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhH
Confidence            78899999999999888887511     111444444444444444443333333333322    23333       333


Q ss_pred             hhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHH---H
Q 024148          115 DGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDE---V  191 (272)
Q Consensus       115 D~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDe---V  191 (272)
                      ..+|-||..+..  ++.|.++...  +|....+++.....++.+   .+..+++-+..|+.+...-.=-.++++.+   .
T Consensus       542 ~~~rk~le~~~~--d~~~e~~~~~--kl~~~~~e~~~~iq~~~e---~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~  614 (1317)
T KOG0612|consen  542 NSLRKQLEEAEL--DMRAESEDAG--KLRKHSKELSKQIQQELE---ENRDLEDKLSLLEESKSKLSKENKKLRSELEKE  614 (1317)
T ss_pred             HHHHHHHHHhhh--hhhhhHHHHh--hHhhhhhhhhHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444443322  2333333222  233333443333333333   45555666666655543332223333333   2


Q ss_pred             HHHHHHHHHHHHHhc----------CCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhhccchhhhhH
Q 024148          192 FRIEQDIMQTIAKAG----------VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE  261 (272)
Q Consensus       192 lriE~dIm~Avakag----------~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaHW~~KTKELE  261 (272)
                      .+-.++|-+.++-+.          ....++++|+.+ .---|-|.           |.-.-.+  =+-+||..+-|.++
T Consensus       615 ~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~-----------~~~~ek~--~~e~~~e~~lk~~q  680 (1317)
T KOG0612|consen  615 RRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQER-----------ISDSEKE--ALEIKLERKLKMLQ  680 (1317)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHH-----------HHHHHHH--HHHHHHHHHHHHHH
Confidence            233333333332221          234455555544 22222222           2222222  56789999998888


Q ss_pred             Hhhhh
Q 024148          262 SQRSN  266 (272)
Q Consensus       262 sQlek  266 (272)
                      .+++.
T Consensus       681 ~~~eq  685 (1317)
T KOG0612|consen  681 NELEQ  685 (1317)
T ss_pred             HHHHH
Confidence            87764

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.70  E-value=3.6  Score=38.50  Aligned_cols=16  Identities=31%  Similarity=0.314  Sum_probs=11.6

Q ss_pred             hhhhHHHHHhHHHHHh
Q 024148          163 VTRLGQQLDNLQKDLQ  178 (272)
Q Consensus       163 V~~lgeQLd~LqK~Lq  178 (272)
                      |++|..+++.||+-.-
T Consensus       273 i~~Lk~~~~~Le~l~g  288 (312)
T smart00787      273 IEKLKEQLKLLQSLTG  288 (312)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            6778888888877543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK09039 hypothetical protein; Validated

Probab=91.49  E-value=12  Score=35.04  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=17.8

Q ss_pred             hhhhhhhchhhhhhhHhhhhHHHHHhHHHH
Q 024148          147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKD  176 (272)
Q Consensus       147 keL~eK~~sLkEhE~rV~~lgeQLd~LqK~  176 (272)
                      .+|.+......|---.|.+|..|+..|...
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q  152 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQ  152 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            556555555555555666666666665554

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=91.47  E-value=18  Score=36.98  Aligned_cols=74  Identities=23%  Similarity=0.278  Sum_probs=42.3

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhH------------HhHH---------HHHHHHHHHHhhh
Q 024148           91 KTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASA------------ASAQ---------SAQLQCLALVKEL  149 (272)
Q Consensus        91 K~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSA------------aSAq---------saqlqCl~L~keL  149 (272)
                      .+|.+...++......+.++..|++.|+.||..++....||-            +++.         .+.|+|-.|..+|
T Consensus       262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qL  341 (546)
T PF07888_consen  262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQL  341 (546)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            344444444444444455566777888877777766655442            2221         2445666667777


Q ss_pred             hhhhchhhhhhhHhh
Q 024148          150 DEKNSSLKEHEDRVT  164 (272)
Q Consensus       150 ~eK~~sLkEhE~rV~  164 (272)
                      .+-.--|+|+.-+..
T Consensus       342 ad~~l~lke~~~q~~  356 (546)
T PF07888_consen  342 ADASLELKEGRSQWA  356 (546)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            776667777664433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.05  E-value=10  Score=33.40  Aligned_cols=136  Identities=18%  Similarity=0.273  Sum_probs=62.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 024148           30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK  109 (272)
Q Consensus        30 LkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEk  109 (272)
                      |.+||.+=.+|=--|-.|=++=+.....+..-......++     . .-....|.||..|.+.+.+-..+-..-..-...
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~-----~-~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~   79 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEV-----S-RIKEMYEEELRELRRQIDDLSKEKARLELEIDN   79 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccC-----c-ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhh
Confidence            4455655555555555554444443333332222221111     1 111224555555555554444433333334444


Q ss_pred             HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHh
Q 024148          110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ  178 (272)
Q Consensus       110 yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lq  178 (272)
                      +..+++++|.++....       +-=+.+.-....|-+.+++-+..-..=+-++..|.++|+-+.+.++
T Consensus        80 l~~e~~~~r~k~e~e~-------~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he  141 (312)
T PF00038_consen   80 LKEELEDLRRKYEEEL-------AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE  141 (312)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence            5555555555554431       1112333344445566666665555666666666666666655554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF15294 Leu_zip: Leucine zipper

Probab=90.47  E-value=4.1  Score=38.33  Aligned_cols=74  Identities=23%  Similarity=0.426  Sum_probs=56.7

Q ss_pred             HhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhH
Q 024148          171 DNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK  247 (272)
Q Consensus       171 d~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeir  247 (272)
                      +.+.+-+...+.+++-|++.|-.-=+++...=.. ..-...||.+.+.+  ...|-||-.+|.-|.++|.-||..+.
T Consensus       204 ~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qeq-L~~aekeLekKfqq--T~ay~NMk~~ltkKn~QiKeLRkrl~  277 (278)
T PF15294_consen  204 SELEKALQDKESQQKALEETLQSCKHELLRVQEQ-LSLAEKELEKKFQQ--TAAYRNMKEILTKKNEQIKELRKRLA  277 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhcchhhHHHHhCc--cHHHHHhHHHHHhccHHHHHHHHHhc
Confidence            4456667777788888888887777776654433 45667788888875  56799999999999999999998763

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.86  E-value=22  Score=35.34  Aligned_cols=94  Identities=16%  Similarity=0.252  Sum_probs=50.1

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 024148           26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC  105 (272)
Q Consensus        26 lDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~  105 (272)
                      +|-|-.||..-....++++.     ..++..++..-|+-+..-.......+.....++.++..+++.+++-...++....
T Consensus       184 ~~~L~~dl~~~~~~~~~~~~-----~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG  258 (650)
T TIGR03185       184 IDRLAGDLTNVLRRRKKSEL-----PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG  258 (650)
T ss_pred             HHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34466677664444444431     2333333333333333333333445556667777777777777777776666543


Q ss_pred             hHHHHHHHhhhHhhhHHHHHHh
Q 024148          106 TAEKYLMQLDGLRSQLAATKAT  127 (272)
Q Consensus       106 stEkyl~eLD~lRSQLs~TqAT  127 (272)
                         .+..+.+.|..++....+.
T Consensus       259 ---~~~~~r~~Le~ei~~le~e  277 (650)
T TIGR03185       259 ---DLFEEREQLERQLKEIEAA  277 (650)
T ss_pred             ---hHHHHHHHHHHHHHHHHHH
Confidence               3555555555555554443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.66  E-value=23  Score=35.24  Aligned_cols=99  Identities=21%  Similarity=0.297  Sum_probs=67.9

Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhh
Q 024148           24 REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQAS  103 (272)
Q Consensus        24 ~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as  103 (272)
                      .++..-++++..+...+......+-++++++..++..-++.|..+.-.+  ++. -..+|.++..+...+.+...++.-.
T Consensus       212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~--~~~-r~~Le~ei~~le~e~~e~~~~l~~l  288 (650)
T TIGR03185       212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDL--FEE-REQLERQLKEIEAARKANRAQLREL  288 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556777778888888899999999999999998888888766543  222 2467788888888888888887755


Q ss_pred             hhhHHH--HH-HHhhhHhhhHHHHH
Q 024148          104 ACTAEK--YL-MQLDGLRSQLAATK  125 (272)
Q Consensus       104 ~~stEk--yl-~eLD~lRSQLs~Tq  125 (272)
                      ++..=-  |+ +-++.++.|+..-+
T Consensus       289 ~~~~~p~~l~~~ll~~~~~q~~~e~  313 (650)
T TIGR03185       289 AADPLPLLLIPNLLDSTKAQLQKEE  313 (650)
T ss_pred             hcccCCHhhhHHHHHHHHHHHHHHH
Confidence            533211  22 45556666665544

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=89.38  E-value=0.11  Score=53.67  Aligned_cols=143  Identities=29%  Similarity=0.406  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHH
Q 024148           43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA  122 (272)
Q Consensus        43 nvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs  122 (272)
                      .+..|-..+|+..+++..-+.-+.-|-..|.-||..-+.|..|+-.|...|++..+.-.|..-.--+.=.||..||.+|.
T Consensus        33 ~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LE  112 (859)
T PF01576_consen   33 LRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLE  112 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHH
Confidence            45556678899999999999999999999999999999999999999999988777655444444455589999999997


Q ss_pred             HHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchh-hhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 024148          123 ATKATADASAASAQSAQLQCLALVKELDEKNSSL-KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT  201 (272)
Q Consensus       123 ~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sL-kEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~A  201 (272)
                      -+....++..+                     .| +-|.+.|..|.+|+|+++|.-..=+-...+|..+|--+-.++ +.
T Consensus       113 e~~~~~e~~~~---------------------~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l-~~  170 (859)
T PF01576_consen  113 EANLQHEATLA---------------------ELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQL-DS  170 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHH---------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HH
Confidence            65554444332                     12 569999999999999999988877777778888877777666 44


Q ss_pred             HHHhcC
Q 024148          202 IAKAGV  207 (272)
Q Consensus       202 vakag~  207 (272)
                      +.++..
T Consensus       171 ~~k~k~  176 (859)
T PF01576_consen  171 LQKAKQ  176 (859)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            445543

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=89.26  E-value=24  Score=34.79  Aligned_cols=17  Identities=29%  Similarity=0.540  Sum_probs=7.4

Q ss_pred             hhhhHHHHHhHHHHHhh
Q 024148          163 VTRLGQQLDNLQKDLQA  179 (272)
Q Consensus       163 V~~lgeQLd~LqK~Lqa  179 (272)
                      |..|..+|+.++..|++
T Consensus       339 v~~L~~eL~~~r~eLea  355 (522)
T PF05701_consen  339 VSSLEAELNKTRSELEA  355 (522)
T ss_pred             HhhHHHHHHHHHHHHHH
Confidence            34444444444444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=89.05  E-value=25  Score=34.84  Aligned_cols=212  Identities=20%  Similarity=0.294  Sum_probs=121.0

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhh---
Q 024148           25 EIDPLLKDLNEKKQSFRKNVVSL-----AAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER---   96 (272)
Q Consensus        25 elDPLLkDL~EKK~sfRrnvvsL-----aaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek---   96 (272)
                      +++.-+.++.++-.....++..|     ...+.+.-.++-.-=..|.+|-..|+.++.....+.+-|..+.+.-..-   
T Consensus       249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e  328 (560)
T PF06160_consen  249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE  328 (560)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            35556777777766666665544     2333444444444556788999999999888888777776665443222   


Q ss_pred             hhhhhhhhh-------hHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHH
Q 024148           97 NGRLQASAC-------TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQ  169 (272)
Q Consensus        97 ~eQL~as~~-------stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQ  169 (272)
                      -..+..|-.       ....|-.+|..|..+......       .-..-+..-+.+...+.+=...|.+.+.....+.+.
T Consensus       329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~-------~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~  401 (560)
T PF06160_consen  329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEE-------RIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINES  401 (560)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122222211       222233444444444433322       222223334556666777777888888888888888


Q ss_pred             HHhHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCchhH--------------HHHhhhccCcchHHhhhhhhc
Q 024148          170 LDNLQKDLQ-ARESSQKQLKDEVFRIEQDIMQTIAKAG-VNKDCE--------------LRKLLDEVSPKNFERINKLLV  233 (272)
Q Consensus       170 Ld~LqK~Lq-aRE~SQkQLKDeVlriE~dIm~Avakag-~~~d~E--------------l~kil~evspkn~e~inkll~  233 (272)
                      |+.|.++-. ||+ .-..|+..+.-    |-+-|.+.+ .|...+              |.+.|+. .|=|.+.||+.|.
T Consensus       402 l~~L~~dE~~Ar~-~l~~~~~~l~~----ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~-~pinm~~v~~~l~  475 (560)
T PF06160_consen  402 LQSLRKDEKEARE-KLQKLKQKLRE----IKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQ-VPINMDEVNKQLE  475 (560)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHH
Confidence            888887643 333 22233333322    223333333 233222              3333333 4889999999999


Q ss_pred             cchhHhhhhhhhhHHH
Q 024148          234 VKDEEIHKLKDEIKIM  249 (272)
Q Consensus       234 ~kD~eIakLrdeirim  249 (272)
                      .=-+.|.+|.++..-|
T Consensus       476 ~a~~~v~~L~~~t~~l  491 (560)
T PF06160_consen  476 EAEDDVETLEEKTEEL  491 (560)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888999998876543

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=88.93  E-value=0.12  Score=53.31  Aligned_cols=113  Identities=23%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             HHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHH
Q 024148           65 FVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA  144 (272)
Q Consensus        65 ~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~  144 (272)
                      +-..+..+..+|.+.|.+|.++..|+..+.+-..++........++-.|+++|..+|.-...+.....-.-.+...|.--
T Consensus       168 l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLee  247 (859)
T PF01576_consen  168 LDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEE  247 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556677888999999999999999999999999988888888888999988888876665544443333334444444


Q ss_pred             HHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHH
Q 024148          145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL  177 (272)
Q Consensus       145 L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~L  177 (272)
                      +-..|++-+..-.-=.-.+..+...++.|...+
T Consensus       248 lk~~leeEtr~k~~L~~~l~~le~e~~~L~eql  280 (859)
T PF01576_consen  248 LKRQLEEETRAKQALEKQLRQLEHELEQLREQL  280 (859)
T ss_dssp             ---------------------------------
T ss_pred             hHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            445555433332222233444444444443333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=88.72  E-value=35  Score=39.53  Aligned_cols=177  Identities=19%  Similarity=0.255  Sum_probs=124.0

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH----hhHHHHHH-------HhhchHHHHHHHHHHH
Q 024148           25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET----LTRQEAEM-------KAKNMEDEICKLQKTL   93 (272)
Q Consensus        25 elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt----~tRk~aE~-------kak~ME~Ei~kLqK~L   93 (272)
                      .+.|=|++.-++--.++-++..=-.+..+...-.-+.|+++.++=    ++|...+.       +..+.|++|..|.+.+
T Consensus       902 ~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~  981 (1822)
T KOG4674|consen  902 ILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEI  981 (1822)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344557777777777777776666666666666667777665431    23444444       4556777777888888


Q ss_pred             hhhhhhhhhhhhhHHH----HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhh----hhchhhhhhhH---
Q 024148           94 EERNGRLQASACTAEK----YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE----KNSSLKEHEDR---  162 (272)
Q Consensus        94 eek~eQL~as~~stEk----yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~e----K~~sLkEhE~r---  162 (272)
                      .+..+++..++-.-++    |..+++-+++-+......+...-..-...+.+|....+.++.    ..+-|..|.+-   
T Consensus       982 ~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~ 1061 (1822)
T KOG4674|consen  982 ENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQK 1061 (1822)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777766665    889999999998888888877777778888899888666543    66778888875   


Q ss_pred             hhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 024148          163 VTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT  201 (272)
Q Consensus       163 V~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~A  201 (272)
                      +.+|++++..++-.+..=..+-.+.-+.....+.|+|+.
T Consensus      1062 l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~ 1100 (1822)
T KOG4674|consen 1062 LIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEK 1100 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHH
Confidence            567788888877777666666556556666666666554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=88.46  E-value=49  Score=37.35  Aligned_cols=76  Identities=18%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhh--hhHHHh---hhccchh
Q 024148          185 KQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD--EIKIMS---AHWKLKT  257 (272)
Q Consensus       185 kQLKDeVlriE~dIm~Avakag--~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrd--eirimS---aHW~~KT  257 (272)
                      .++..++...|.....+=+...  ......+..+.-.|+|.+--+--         ...|++  +.+++.   +-|+.+-
T Consensus       452 ee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  522 (1486)
T PRK04863        452 QEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVA---------RELLRRLREQRHLAEQLQQLRMRL  522 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH---------HHHHHHhHHHHHHHHhhHHHHHHH
Confidence            3555556666665555444333  44556777788888887654322         222221  333433   4688899


Q ss_pred             hhhHHhhhhccc
Q 024148          258 KELESQRSNGEQ  269 (272)
Q Consensus       258 KELEsQlek~~~  269 (272)
                      .+||..++.|++
T Consensus       523 ~~l~~~~~~q~~  534 (1486)
T PRK04863        523 SELEQRLRQQQR  534 (1486)
T ss_pred             HHHHHHHHHHHH
Confidence            999998888765

>PRK11637 AmiB activator; Provisional

Probab=87.76  E-value=25  Score=33.16  Aligned_cols=56  Identities=18%  Similarity=0.238  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhh
Q 024148           46 SLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ  101 (272)
Q Consensus        46 sLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~  101 (272)
                      .+..+|+.+...|..-++.+..=...-...+.+....+.+|..+++.+.....+|.
T Consensus        72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444443333333322222244556666666777777777666655553

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=87.68  E-value=29  Score=33.95  Aligned_cols=95  Identities=19%  Similarity=0.332  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhh-------hhhhhH
Q 024148           39 SFRKNVVSLAAELKEVRTRLASQ----EQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ-------ASACTA  107 (272)
Q Consensus        39 sfRrnvvsLaaELK~~R~rLasQ----Eq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~-------as~~st  107 (272)
                      -++--+..+.+|++.-|.+|..-    ...|.-+...+..-.-+.++|.+-+..|...+...++-..       ..+...
T Consensus       113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~  192 (511)
T PF09787_consen  113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKK  192 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            34444555788888888777765    4445555544444334446666655555544443332211       112222


Q ss_pred             H-----------------HHHHHhhhHhhhHHHHHHhhHhhHH
Q 024148          108 E-----------------KYLMQLDGLRSQLAATKATADASAA  133 (272)
Q Consensus       108 E-----------------kyl~eLD~lRSQLs~TqATAeaSAa  133 (272)
                      +                 .|+.+..++-.++...++.++..-+
T Consensus       193 e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~  235 (511)
T PF09787_consen  193 EIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEA  235 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            2                 3667777788888888877765443

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.55  E-value=2  Score=36.63  Aligned_cols=97  Identities=25%  Similarity=0.369  Sum_probs=28.5

Q ss_pred             CCCCCCCCCCccccchhhhhhH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHH
Q 024148           13 SSSSSSSSVPAREIDPLLKDLN-------EKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE   85 (272)
Q Consensus        13 ~~~~~sss~~~~elDPLLkDL~-------EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~E   85 (272)
                      +.++|+++.+..++++.+-.|.       -.+-.+-..|+.+-.+|...+..+..++...              ..++.|
T Consensus        59 ~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l--------------~~l~~~  124 (194)
T PF08614_consen   59 SESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRL--------------AELEAE  124 (194)
T ss_dssp             -------------------------------------------------------HHHHH--------------HHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHH--------------HHHHHH
Confidence            3334445556666777654443       3344455556666666666666665554444              445555


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHH
Q 024148           86 ICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA  123 (272)
Q Consensus        86 i~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~  123 (272)
                      +..|+..+.+..+.|..-....+-.-.|+.-|.-|+..
T Consensus       125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~  162 (194)
T PF08614_consen  125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNM  162 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555566666777777655543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.51  E-value=17  Score=30.05  Aligned_cols=72  Identities=18%  Similarity=0.270  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHh
Q 024148           47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLR  118 (272)
Q Consensus        47 LaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lR  118 (272)
                      +-.|+.+...+|+..++-+.++..-=...+.....+++....+++-+++..+.+.+....-..+..|+-+++
T Consensus        79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555544444333334444444455555555555555555555555555555555555555

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=85.98  E-value=3.1  Score=40.78  Aligned_cols=185  Identities=21%  Similarity=0.318  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhh---hh--h-hhh
Q 024148           31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNG---RL--Q-ASA  104 (272)
Q Consensus        31 kDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~e---QL--~-as~  104 (272)
                      .+|++-|..+-..+.+|..++++++..|..|.....+.--.+          ..++..-....----.   +.  . +..
T Consensus        74 ~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~p~~~~~~~~~~~~~  143 (424)
T PF03915_consen   74 EPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKER----------QQSAAKPVARPAAAPPPSSAPSSSSSPQ  143 (424)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhcccccccccCCCCCcccccccCcC
Confidence            346777888888999999999999999998877663221111          1111100000000000   00  0 000


Q ss_pred             hhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhh-------------hhchhhhhhhHhhhhHHHHH
Q 024148          105 CTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-------------KNSSLKEHEDRVTRLGQQLD  171 (272)
Q Consensus       105 ~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~e-------------K~~sLkEhE~rV~~lgeQLd  171 (272)
                      ......++|+.+||.+|++.+.+-.+.........--|..-++.+..             =+++-++......+|-.++|
T Consensus       144 ~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVd  223 (424)
T PF03915_consen  144 STSKSDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVD  223 (424)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111478999999999999988777766666555555444333222             01122333334444444444


Q ss_pred             hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhh
Q 024148          172 NLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSA  251 (272)
Q Consensus       172 ~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSa  251 (272)
                      .||--.+       +||..|.           .-|           --++|+.++.+.+.+.-=..++.++++-|..+-+
T Consensus       224 DLQD~VE-------~LRkDV~-----------~Rg-----------vRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp  274 (424)
T PF03915_consen  224 DLQDLVE-------DLRKDVV-----------QRG-----------VRPSPKQLETVAKDISRASKELKKMKEYIKTEKP  274 (424)
T ss_dssp             HHHHHHH-------HHHHHHH-----------HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-------HHHHHHH-----------HcC-----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            4443332       2332221           111           1367888999999999989999999999999999


Q ss_pred             hcc
Q 024148          252 HWK  254 (272)
Q Consensus       252 HW~  254 (272)
                      +|+
T Consensus       275 ~Wk  277 (424)
T PF03915_consen  275 IWK  277 (424)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            997

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=84.55  E-value=44  Score=37.63  Aligned_cols=13  Identities=8%  Similarity=0.161  Sum_probs=5.5

Q ss_pred             CcchHHhhhhhhc
Q 024148          221 SPKNFERINKLLV  233 (272)
Q Consensus       221 spkn~e~inkll~  233 (272)
                      +|.|.+-++.+..
T Consensus       549 ~~~~~~~~~~~~~  561 (1486)
T PRK04863        549 NLDDEDELEQLQE  561 (1486)
T ss_pred             CCCCHHHHHHHHH
Confidence            3344444444443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=84.42  E-value=40  Score=32.46  Aligned_cols=156  Identities=24%  Similarity=0.319  Sum_probs=92.8

Q ss_pred             CCCCCCCCCccccchhhhhhHHHHH-------HHHHHHHHHHHHHHHHHhh------hhhhhhHHHHHHhhH------HH
Q 024148           14 SSSSSSSVPAREIDPLLKDLNEKKQ-------SFRKNVVSLAAELKEVRTR------LASQEQCFVKETLTR------QE   74 (272)
Q Consensus        14 ~~~~sss~~~~elDPLLkDL~EKK~-------sfRrnvvsLaaELK~~R~r------LasQEq~~akEt~tR------k~   74 (272)
                      ..+|||++..-.+=+.+.-|-.+--       .+|.-+..|..|++.+|.-      =|.||.-|.-=+.-+      |+
T Consensus        13 ~~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~ke   92 (310)
T PF09755_consen   13 GMTSSSSATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKE   92 (310)
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555554555555555544333       3566677888888888853      355666665555544      33


Q ss_pred             HHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH-----HhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhh
Q 024148           75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM-----QLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL  149 (272)
Q Consensus        75 aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~-----eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL  149 (272)
                      -|.=|.++|-|=.-|-..|.-|-.||+.--+..|.-|.     .++.|+.+|....  ++..+-....-+|.+    ...
T Consensus        93 Ke~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le--~e~~~~q~~le~Lr~----EKV  166 (310)
T PF09755_consen   93 KETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE--KEKSAKQEELERLRR----EKV  166 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHH----HHH
Confidence            44556677777777777788888888877776666542     2566666665432  222222111222222    122


Q ss_pred             hhhhchhhhhhhHhhhhHHHHHhHHH
Q 024148          150 DEKNSSLKEHEDRVTRLGQQLDNLQK  175 (272)
Q Consensus       150 ~eK~~sLkEhE~rV~~lgeQLd~LqK  175 (272)
                      +=.|-.=.|-|.=||+|+-|.|.|-.
T Consensus       167 dlEn~LE~EQE~lvN~L~Kqm~~l~~  192 (310)
T PF09755_consen  167 DLENTLEQEQEALVNRLWKQMDKLEA  192 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556888999999999998754

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=83.23  E-value=71  Score=37.32  Aligned_cols=148  Identities=23%  Similarity=0.289  Sum_probs=82.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhH
Q 024148           28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTA  107 (272)
Q Consensus        28 PLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~st  107 (272)
                      |.++||.--...-++.---+-+.+..+..|++.-+.-+..=...=.-++.--|..|-|...+...+...+.|.-++...-
T Consensus      1639 ~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~K 1718 (1930)
T KOG0161|consen 1639 AQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEK 1718 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHH
Confidence            44555555555555544445555555555544332222110000011222234455555555555555555544443333


Q ss_pred             HHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148          108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA  179 (272)
Q Consensus       108 Ekyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lqa  179 (272)
                      -+.-.+|-.|.+.|.-++--..++-.=+.-|+.+|.-+..+|+..    ++|-.++.+.-.+|...-|||+.
T Consensus      1719 rklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~E----q~~~~~le~~k~~LE~~~kdLq~ 1786 (1930)
T KOG0161|consen 1719 RKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKE----QETSQKLERLKKSLERQVKDLQL 1786 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            345588899999999888888888888999999999999998863    23333344444444444444443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.73  E-value=91  Score=35.25  Aligned_cols=233  Identities=21%  Similarity=0.256  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHhhHHHHHHHhhchHHHHHHHHHHHhh-------hhhhhhhhhhh
Q 024148           35 EKKQSFRKNVVSLAAELKEVRTRLASQEQCFV-KETLTRQEAEMKAKNMEDEICKLQKTLEE-------RNGRLQASACT  106 (272)
Q Consensus        35 EKK~sfRrnvvsLaaELK~~R~rLasQEq~~a-kEt~tRk~aE~kak~ME~Ei~kLqK~Lee-------k~eQL~as~~s  106 (272)
                      -|.-.+..-.-++..+||+-.-+...-....+ ++..-++..+.+++.......-+++.+.+       +-++|.--.+-
T Consensus       334 ~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k  413 (1293)
T KOG0996|consen  334 AKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSK  413 (1293)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555566666666655542222221 12222244444554444444444444433       22344444455


Q ss_pred             HHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhH----hhhhHHHHHhHHHHHhhhhh
Q 024148          107 AEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDR----VTRLGQQLDNLQKDLQARES  182 (272)
Q Consensus       107 tEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~r----V~~lgeQLd~LqK~LqaRE~  182 (272)
                      ..|.-++++..|...+.....-+-+--.-+--|.---.|.+.+..-+..|.+.-+-    -..+.+..+-+++.|.--..
T Consensus       414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~  493 (1293)
T KOG0996|consen  414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK  493 (1293)
T ss_pred             HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            55566677777666665443333222222222221222222222222333332222    22233444445555544444


Q ss_pred             hHHHHHHH--HHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhhccchhhhh
Q 024148          183 SQKQLKDE--VFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL  260 (272)
Q Consensus       183 SQkQLKDe--VlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaHW~~KTKEL  260 (272)
                      .-.+.+-+  |..-|-|||---.-.|..+.-++.+-|...+-.+-|+-+.+..++ .+|-.+++|++=.+.......++.
T Consensus       494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k-~~l~~~k~e~~~~~k~l~~~~~e~  572 (1293)
T KOG0996|consen  494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLK-EELPSLKQELKEKEKELPKLRKEE  572 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhHHHHHHHH
Confidence            44455555  777788888888888888888888888888877777766665555 678888888877765554444433


Q ss_pred             ---HHhhhhcc
Q 024148          261 ---ESQRSNGE  268 (272)
Q Consensus       261 ---EsQlek~~  268 (272)
                         -+|+-+++
T Consensus       573 ~~~~~~~~~~r  583 (1293)
T KOG0996|consen  573 RNLKSQLNKLR  583 (1293)
T ss_pred             HHHHHHHHHHH
Confidence               34444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.47  E-value=15  Score=33.77  Aligned_cols=66  Identities=24%  Similarity=0.409  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhhhhhhch----hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024148          139 QLQCLALVKELDEKNSS----LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK  204 (272)
Q Consensus       139 qlqCl~L~keL~eK~~s----LkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avak  204 (272)
                      .++=+..+-.||-.+.+    .++|..-+.++-.+++-+.+.+.+.+.--..|+.+|.++|.||=++-.+
T Consensus         5 ~~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r   74 (239)
T COG1579           5 NLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER   74 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455554444    4678888999999999999999999999999999999999999776544

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=81.30  E-value=1.2e+02  Score=35.57  Aligned_cols=213  Identities=23%  Similarity=0.281  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHhhhh----hhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH----HHHH
Q 024148           42 KNVVSLAAELKEVRTRLA----SQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK----YLMQ  113 (272)
Q Consensus        42 rnvvsLaaELK~~R~rLa----sQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEk----yl~e  113 (272)
                      ..+-+|-+|....+..|.    .++.+---++.+|+--+.+.+.++.++.+|.+.|+++..+++..+..-++    |..-
T Consensus       766 ~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~  845 (1822)
T KOG4674|consen  766 QELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNL  845 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            344455555555555443    23333344667888888999999999999999999999999999887665    4445


Q ss_pred             hhhHhhhHHHHHHhhHhhHHh--HHHHHHHHHHHHhhhhh-hhch-----------hhhhhhHhhhhHHHHHhHHHHHhh
Q 024148          114 LDGLRSQLAATKATADASAAS--AQSAQLQCLALVKELDE-KNSS-----------LKEHEDRVTRLGQQLDNLQKDLQA  179 (272)
Q Consensus       114 LD~lRSQLs~TqATAeaSAaS--AqsaqlqCl~L~keL~e-K~~s-----------LkEhE~rV~~lgeQLd~LqK~Lqa  179 (272)
                      +|.+-+-+.-+..-  -+-++  ......+-..|-|+|-. +..-           ..--++-+....+|...|...|..
T Consensus       846 i~~~~~~~~~~~~~--l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~  923 (1822)
T KOG4674|consen  846 VDELESELKSLLTS--LDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTD  923 (1822)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            55554443322211  11110  11222233333333322 1111           111122334444555555666666


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhhccchhhh
Q 024148          180 RESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKE  259 (272)
Q Consensus       180 RE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaHW~~KTKE  259 (272)
                      ...--.|+++++...|.=+-.-.        +++-+...++..+=-...+++-.+ -++|..|+++|-.++.--.+=+|.
T Consensus       924 a~s~i~~yqe~~~s~eqsl~~~k--------s~lde~~~~~ea~ie~~~~k~tsl-E~~ls~L~~~~~~l~~e~~~~~k~  994 (1822)
T KOG4674|consen  924 ALSQIREYQEEYSSLEQSLESVK--------SELDETRLELEAKIESLHKKITSL-EEELSELEKEIENLREELELSTKG  994 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccc
Confidence            65555677777777766554433        333333333333322233333333 356777888888887777777777


Q ss_pred             hHHhhh
Q 024148          260 LESQRS  265 (272)
Q Consensus       260 LEsQle  265 (272)
                      .|.++.
T Consensus       995 ~e~~~~ 1000 (1822)
T KOG4674|consen  995 KEDKLL 1000 (1822)
T ss_pred             hhhhHH
Confidence            777654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=80.70  E-value=72  Score=32.73  Aligned_cols=36  Identities=19%  Similarity=0.475  Sum_probs=22.1

Q ss_pred             HhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHH
Q 024148          162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQD  197 (272)
Q Consensus       162 rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~d  197 (272)
                      .|..+-++...+.-+++.++=..+||..++-++-.|
T Consensus       448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~  483 (594)
T PF05667_consen  448 EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD  483 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            345555666666666666666666666666665544

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.44  E-value=40  Score=29.64  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=28.1

Q ss_pred             HHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHh
Q 024148          112 MQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRV  163 (272)
Q Consensus       112 ~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV  163 (272)
                      ..++..-.+|.++..--+-+-.-+..+.-.|-.|=.+|+.-.++|+..|-..
T Consensus       113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~  164 (237)
T PF00261_consen  113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE  164 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence            3444555555555554444444455555566666666666666665444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 36/240 (15%), Positives = 92/240 (38%), Gaps = 10/240 (4%)

Query: 29   LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICK 88
            L  +  E +         L   L E+  R+  +E+         Q+ + + K M+ ++  
Sbjct: 907  LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE-------RSQQLQAEKKKMQQQMLD 959

Query: 89   LQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKE 148
            L++ LEE     Q           ++  +   +   +   +      +  + +   L   
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 149  LDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVN 208
            L E+    K       +    +  L+  L+  E S+++L+    ++E +      +    
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079

Query: 209  KDCELRKLLDEVSPKNFERINKLLVVKDE--EIHKLKDEIKIMSAHWKLKTKELESQRSN 266
            +  ++ +L  +++ K  E    L  ++DE  + +    +I+ + +H     ++LES+++ 
Sbjct: 1080 QA-QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 25/169 (14%), Positives = 65/169 (38%)

Query: 30   LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89
            + DL        +   +L     +  + ++  E    KE  +RQE E   + +E E   L
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 90   QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL 149
             + + E   ++        K   +L    ++L    +  + +    +  +     L ++L
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132

Query: 150  DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198
            + + ++  + E +   L ++L+ L+ +L+    +    ++      +D 
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 31/230 (13%), Positives = 86/230 (37%), Gaps = 7/230 (3%)

Query: 36   KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEE 95
            K     + + +   EL+  + R    E    +      +   +   +++++    +   E
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 96   RNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSS 155
                    A   ++    L  + +++   +  +    A  +  Q Q L L ++L+E+ ++
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 156  LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK--AGVNKDCEL 213
             ++ +        ++  ++ D+   E    +L  E   +E+ +            K   L
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 214  RKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQ 263
             KL ++      E +   L V+ ++  K + E++ +    + ++ +L  Q
Sbjct: 1031 TKLKNK-----HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 7/147 (4%)

Query: 25   EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMED 84
            E++  LK   + +Q   K    L  E  ++  ++A  +           E + +    E+
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA-------QIAELKAQLAKKEE 1095

Query: 85   EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA 144
            E+      LE+   +   +     +    +  L+  L + KA  + +    +    +  A
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 145  LVKELDEKNSSLKEHEDRVTRLGQQLD 171
            L  EL++   +    ++      +  D
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDD 1182

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 29/176 (16%), Positives = 73/176 (41%), Gaps = 5/176 (2%)

Query: 23   AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
            A+     LK      + ++K  + L  ++ +++ ++  Q + +          E+     
Sbjct: 902  AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 83   EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
             +++    + L       + +         ++  LR +L  T+         A   + + 
Sbjct: 962  TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021

Query: 143  LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198
              LV EL E+N+ LK  ++    L +++ +  K++   E+ +K+L +E  ++E D+
Sbjct: 1022 EQLVSELKEQNTLLKTEKE---ELNRRIHDQAKEIT--ETMEKKLVEETKQLELDL 1072

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 20/213 (9%), Positives = 67/213 (31%), Gaps = 17/213 (7%)

Query: 35   EKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94
              +  + + + ++       R  +A +E   +K      E   K          L+  + 
Sbjct: 878  LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHI------GLENKIM 931

Query: 95   ERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNS 154
            +   ++       +  L +++ L    +       +     + ++ +       +     
Sbjct: 932  QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991

Query: 155  SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELR 214
             + +    + +   +   +++     +   +QL  E+      +             EL 
Sbjct: 992  EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE--------ELN 1043

Query: 215  KLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247
            + + + + +  E + K L    EE  +L+ ++ 
Sbjct: 1044 RRIHDQAKEITETMEKKL---VEETKQLELDLN 1073

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 34/247 (13%), Positives = 73/247 (29%), Gaps = 47/247 (19%)

Query: 23   AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
             R+    ++D     Q+  +  +        +R   +   Q  V+  L R       K +
Sbjct: 831  VRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI 890

Query: 83   EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
                  LQ        + +            L  L+ +           A S +  +   
Sbjct: 891  V----YLQCCYRRMMAKRE------------LKKLKIE-----------ARSVERYKKLH 923

Query: 143  LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
            + L  ++ +    + E       L ++++NL+          +   + +   E+      
Sbjct: 924  IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE------ 977

Query: 203  AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
                     E +   + V     E I KL     +E+H+ + E K +         E E 
Sbjct: 978  ---------EAKNATNRVLSLQ-EEIAKL----RKELHQTQTEKKTIEEWADKYKHETEQ 1023

Query: 263  QRSNGEQ 269
              S  ++
Sbjct: 1024 LVSELKE 1030

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 48/296 (16%), Positives = 98/296 (33%), Gaps = 96/296 (32%)

Query: 24  REIDPLLKDLNEKKQSFR---------KNVV-----------------SLAAELK----- 52
            EID ++   +    + R         + +V                  +  E +     
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 53  -----EVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTA 107
                E R RL +  Q F K  ++R +             KL++ L E    L+      
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQ----------PYLKLRQALLE----LR-----P 149

Query: 108 EKYLMQLDGL----RSQLAATKATADASAASAQSAQLQCLAL-------VKELDEKNSSL 156
            K ++ +DG+    ++ +A              S ++QC          +K  +   + L
Sbjct: 150 AKNVL-IDGVLGSGKTWVA---------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 157 KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKL 216
           +     + +L  Q+D    +  +R      +K  +  I+ ++ + +      ++C L  +
Sbjct: 200 E----MLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLL--V 249

Query: 217 LDEV-SPKNFERIN---KLLV------VKDEEIHKLKDEIKIMSAHWKLKTKELES 262
           L  V + K +   N   K+L+      V D         I +      L   E++S
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.28
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	92.99
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	90.57
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	88.14
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	86.49
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	86.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	85.16
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	84.27

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.28  E-value=0.053  Score=55.18  Aligned_cols=15  Identities=33%  Similarity=0.368  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHH
Q 024148           40 FRKNVVSLAAELKEV   54 (272)
Q Consensus        40 fRrnvvsLaaELK~~   54 (272)
                      ++.++..+..+++++
T Consensus       869 l~~~L~~le~~l~el  883 (1184)
T 1i84_S          869 TKERQQKAEAELKEL  883 (1184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333343333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=92.99  E-value=0.32  Score=49.52  Aligned_cols=9  Identities=0%  Similarity=0.246  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 024148           84 DEICKLQKT   92 (272)
Q Consensus        84 ~Ei~kLqK~   92 (272)
                      .++..++..
T Consensus       927 ~~l~ele~e  935 (1184)
T 1i84_S          927 EILHEMEAR  935 (1184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=90.57  E-value=5.2  Score=31.39  Aligned_cols=28  Identities=29%  Similarity=0.276  Sum_probs=14.2

Q ss_pred             HHHhhHHHHHHHhhchHHHHHHHHHHHh
Q 024148           67 KETLTRQEAEMKAKNMEDEICKLQKTLE   94 (272)
Q Consensus        67 kEt~tRk~aE~kak~ME~Ei~kLqK~Le   94 (272)
                      ++...|++.|.+...+..|+..|+..|+
T Consensus        31 k~e~~r~ele~~~~~l~~Ek~~L~~qL~   58 (129)
T 2fxo_A           31 KSEARRKELEEKMVSLLQEKNDLQLQVQ   58 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555554443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=88.14  E-value=25  Score=40.73  Aligned_cols=119  Identities=17%  Similarity=0.207  Sum_probs=62.4

Q ss_pred             HHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhh-------HhhHHhHHHHHHHH-------
Q 024148           77 MKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATA-------DASAASAQSAQLQC-------  142 (272)
Q Consensus        77 ~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATA-------eaSAaSAqsaqlqC-------  142 (272)
                      .|...-.+.|.+||+.|.++..+|......|++.+.++..=...-...++.+       +.-++-++.-+-.|       
T Consensus      1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A 2006 (3245)
T 3vkg_A         1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4555556778888888888888888888888888776654332222222211       11111111111122       


Q ss_pred             ----------HHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHH
Q 024148          143 ----------LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIE  195 (272)
Q Consensus       143 ----------l~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE  195 (272)
                                -.+-++|......|.+-+..+..|.+.|+.|+..++..-.-...|++++-..+
T Consensus      2007 ~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A         2007 EPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      12223444455556666666666666666666665544333334444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=86.49  E-value=14  Score=31.32  Aligned_cols=71  Identities=6%  Similarity=0.140  Sum_probs=44.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhh
Q 024148           31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ  101 (272)
Q Consensus        31 kDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~  101 (272)
                      .+++-+-..++.-.-.|-+||.++...++.-...+..=.......+...+..|.+|..+...+..-..+|-
T Consensus        14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~   84 (256)
T 3na7_A           14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS   84 (256)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555566677777777776666666555555566666667777777777766666555553

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=86.36  E-value=49  Score=38.43  Aligned_cols=31  Identities=13%  Similarity=0.255  Sum_probs=17.3

Q ss_pred             hhhhhhhhHHHHHHHhhhHhhhHHHHHHhhH
Q 024148           99 RLQASACTAEKYLMQLDGLRSQLAATKATAD  129 (272)
Q Consensus        99 QL~as~~stEkyl~eLD~lRSQLs~TqATAe  129 (272)
                      .|.......+..-.||..++-+|...++-|+
T Consensus      1928 KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~ 1958 (3245)
T 3vkg_A         1928 KLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555667777766665554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.16  E-value=21  Score=32.18  Aligned_cols=45  Identities=29%  Similarity=0.285  Sum_probs=29.5

Q ss_pred             hhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024148          164 TRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVN  208 (272)
Q Consensus       164 ~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~  208 (272)
                      .++..+.+.+++.++...--..++++|+-.+..+|.+-..+...|
T Consensus       540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~  584 (597)
T 3oja_B          540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN  584 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            344555566666666666666788888888888887777665443

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=84.27  E-value=0.31  Score=33.22  Aligned_cols=21  Identities=43%  Similarity=0.586  Sum_probs=18.3

Q ss_pred             HhhhhhhccchhHhhhhhhhh
Q 024148          226 ERINKLLVVKDEEIHKLKDEI  246 (272)
Q Consensus       226 e~inkll~~kD~eIakLrdei  246 (272)
                      +++-+-+..||+|||+||.|=
T Consensus        10 ekLhk~ie~KdeeIa~Lk~eN   30 (37)
T 1t6f_A           10 EKLHKEIEQKDNEIARLKKEN   30 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            677888999999999999863

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00