Citrus Sinensis ID: 024152

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLNKIIDESSGHL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccEEEcccccccccccEEccccHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHcccccccEEcccccHHHHHHHHHHHHHHccccEEEEEcEEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccccccccEcccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccccccccEEEEccccHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEcHHcccHHHHHHHcccHHHHEEcccccHHHHHHHHHHHHHcccEEEEEEEcHHEEcccHEEcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MASLLRNASLLRRCllsvspphphpqsfrggmletSTQIcnfsskskrksksdgsdsgeenmskKDLALQQALDQITssfgkgsimwlgrsvtprhvpvvstgsfALDIalgtgglpkgrvveiygpeasgktTLALHVIAEAQrqggycvfidaehaldpslaetigvktenlllaqpdcgEQALSLVDTLIRSGSVDVVVVDSVAAlvpkgeldgemGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLNKIIDESSGHL
Flexible Loop (DISEMBL)
MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICnfsskskrksksdgsdsgeenmsKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLNKIIDESSGHL
Low Complexity Region (SEG)
MAsllrnasllrrcllsVSPPHPHPQSFRGGMLETSTQICNFsskskrksksdgsdsgEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGsvdvvvvdsvaaLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLNKIIDESSGHL
Disordered region (IsUnstruct)
************RCL***********************************************************QITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGEL******************ALRKLSHSLSLSQTILIFINQVFSINLNKII*******
Disordered Region (DISOPRED)
*********LLRRCLLSVSPPHPHPQSFRGGMLETST*********************************QALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLNKIID******
Disordered Region (DISEMBL)
MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNF**********************KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLNKIIDESSGHL
Disordered Region (DISPRO)
*****R*ASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFS******************MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLNKIIDE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLNKIIDESSGHL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9ZUP2	430	DNA repair protein recA h	yes	no	0.922	0.581	0.778	4e-99
Q08327	348	Protein RecA OS=Acetobact	N/A	no	0.701	0.545	0.664	7e-70
A6X0E8	361	Protein RecA OS=Ochrobact	yes	no	0.726	0.545	0.644	9e-70
Q2W9P9	359	Protein RecA OS=Magnetosp	yes	no	0.693	0.523	0.659	9e-70
A5FXB8	343	Protein RecA OS=Acidiphil	yes	no	0.708	0.559	0.635	1e-69
Q11IW6	360	Protein RecA OS=Mesorhizo	yes	no	0.726	0.547	0.644	1e-69
B0CH00	361	Protein RecA OS=Brucella	yes	no	0.726	0.545	0.644	2e-69
P65976	361	Protein RecA OS=Brucella	yes	no	0.726	0.545	0.644	2e-69
P65975	361	Protein RecA OS=Brucella	yes	no	0.726	0.545	0.644	2e-69
C0RJG9	361	Protein RecA OS=Brucella	yes	no	0.726	0.545	0.644	2e-69

>sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At2g19490 PE=2 SV=2

 Score =  360 bits (925), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 200/257 (77%), Positives = 224/257 (87%), Gaps = 7/257 (2%)

Query: 1   MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEE 60
           MA +LRN   LR  L S        +  R  ++ TS Q+  F++K+K+KSKSDG+ S EE
Sbjct: 1   MARILRNVYSLRSSLFS-------SELLRRSVVGTSFQLRGFAAKAKKKSKSDGNGSSEE 53

Query: 61  NMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGR 120
            MSKK++ALQQALDQITSSFGKGSIM+LGR+V+PR+VPV STGSFALD+ALG GGLPKGR
Sbjct: 54  GMSKKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGR 113

Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD 180
           VVEIYGPEASGKTTLALHVIAEAQ+QGG CVF+DAEHALD SLA+ IGV TENLLL+QPD
Sbjct: 114 VVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPD 173

Query: 181 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240
           CGEQALSLVDTLIRSGSVDV+VVDSVAALVPKGEL+GEMGDAHMAMQARLMSQALRKLSH
Sbjct: 174 CGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSH 233

Query: 241 SLSLSQTILIFINQVFS 257
           SLSLSQT+LIFINQV S
Sbjct: 234 SLSLSQTLLIFINQVRS 250

Involved in recombination ability and DNA strand transfer activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q08327|RECA_ACEPO Protein RecA OS=Acetobacter polyoxogenes GN=recA PE=3 SV=1

 Score =  263 bits (673), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 156/191 (81%), Gaps = 1/191 (0%)

Query: 65  KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
           K  AL+ AL QI  +FGKGSIM +G   T   V V+STGS  LDIALG GGLP+GR++EI
Sbjct: 9   KSKALEGALSQIERAFGKGSIMRMGERPT-EQVDVISTGSLGLDIALGIGGLPRGRIIEI 67

Query: 125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
           YGPE+SGKTT+ALH IAEAQR+GG C FIDAEHALDP  A  +GV  +NLL++QPD GEQ
Sbjct: 68  YGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDAGEQ 127

Query: 185 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
           AL + DTL+RSG+VDV+VVDSVAALVP+ EL+G+MGD+H+ + ARLMSQALRKL+ S+S 
Sbjct: 128 ALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSR 187

Query: 245 SQTILIFINQV 255
           S T+LIF+NQ+
Sbjct: 188 SNTMLIFLNQI 198

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Acetobacter polyoxogenes (taxid: 439)

>sp|A6X0E8|RECA_OCHA4 Protein RecA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=recA PE=3 SV=1

 Score =  263 bits (672), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 155/197 (78%)

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           EEN   K  AL  AL QI  +FGKGSIM LG++     +  V TGS +LDIALG GGLPK
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIEIETVPTGSLSLDIALGVGGLPK 69

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++Q
Sbjct: 70  GRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQ 129

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + DTL+RSG++DV+VVDSVAAL P+ E++GEMGD+   +QARLMSQALRKL
Sbjct: 130 PDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 239 SHSLSLSQTILIFINQV 255
           + S+S S  ++IFINQ+
Sbjct: 190 TASISRSNCMVIFINQI 206

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) (taxid: 439375)

>sp|Q2W9P9|RECA_MAGSA Protein RecA OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=recA PE=3 SV=1

 Score =  263 bits (672), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 124/188 (65%), Positives = 154/188 (81%)

Query: 68  ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGP 127
           AL+ A+ QI  +FGKGSIM LG         VVSTGS  LD+ALG GG+P+GR++E+YGP
Sbjct: 19  ALEAAVSQIERAFGKGSIMKLGGKDQVVETEVVSTGSLGLDVALGIGGVPRGRIIEVYGP 78

Query: 128 EASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS 187
           E+SGKTTLALH+IAEAQ++GG C F+DAEHALDPS A  +GV  + LL++QPD GEQAL 
Sbjct: 79  ESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGVNLDELLISQPDAGEQALE 138

Query: 188 LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 247
           + DTL+RSG+VDV+VVDSVAALVP+ EL+GEMGD HM + ARLMSQALRKL+ S+S S+T
Sbjct: 139 IADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDNHMGLHARLMSQALRKLTGSVSKSKT 198

Query: 248 ILIFINQV 255
           I+IFINQ+
Sbjct: 199 IVIFINQI 206

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|A5FXB8|RECA_ACICJ Protein RecA OS=Acidiphilium cryptum (strain JF-5) GN=recA PE=3 SV=1

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 157/192 (81%)

Query: 64  KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 123
           +K+ AL  AL QI  +FGKGSIM +G       + V+STGS  LD+ALG GGLP+GRV+E
Sbjct: 2   EKNKALDAALAQIERAFGKGSIMRMGSRSESEAIDVISTGSLGLDLALGIGGLPRGRVIE 61

Query: 124 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183
           IYGPE+SGKTTLALH +AEAQ++GG C F+DAEHALDP  A  +GV  +NLL++QPD GE
Sbjct: 62  IYGPESSGKTTLALHAVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDTGE 121

Query: 184 QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243
           QAL + DTL+RSG++DV+VVDSVAALVP+ EL+GEMGD+H+ + ARLMSQALRKL+ S+S
Sbjct: 122 QALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGSIS 181

Query: 244 LSQTILIFINQV 255
            S+T++IF+NQ+
Sbjct: 182 RSKTLVIFLNQI 193

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Acidiphilium cryptum (strain JF-5) (taxid: 349163)

>sp|Q11IW6|RECA_MESSB Protein RecA OS=Mesorhizobium sp. (strain BNC1) GN=recA PE=3 SV=1

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 155/197 (78%)

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           EEN   K  AL  AL QI  +FGKGSIM LG +     +  +STGS  LDIALG GGLP+
Sbjct: 10  EENGVDKSKALDAALSQIERAFGKGSIMRLGANDKVVEIETISTGSLGLDIALGVGGLPR 69

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR++EIYGPE+SGKTTLALH +AEAQ++GG C FIDAEHALDP  A  +GV  ENLL++Q
Sbjct: 70  GRIIEIYGPESSGKTTLALHTVAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLISQ 129

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + DTL+RSG+VDV+VVDSVAAL P+ E++GEMG++   MQARLMSQALRKL
Sbjct: 130 PDTGEQALEICDTLVRSGAVDVIVVDSVAALTPRAEIEGEMGESLPGMQARLMSQALRKL 189

Query: 239 SHSLSLSQTILIFINQV 255
           + S+S S T++IFINQ+
Sbjct: 190 TASISRSNTMVIFINQI 206

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Mesorhizobium sp. (strain BNC1) (taxid: 266779)

>sp|B0CH00|RECA_BRUSI Protein RecA OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=recA PE=3 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 156/197 (79%)

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPK
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPK 69

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++Q
Sbjct: 70  GRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQ 129

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + DTL+RSG++DV+VVDSVAAL P+ E++GEMGD+   +QARLMSQALRKL
Sbjct: 130 PDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 239 SHSLSLSQTILIFINQV 255
           + S+S S  ++IFINQ+
Sbjct: 190 TGSISRSNCMVIFINQI 206

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Brucella suis (strain ATCC 23445 / NCTC 10510) (taxid: 470137)

>sp|P65976|RECA_BRUSU Protein RecA OS=Brucella suis biovar 1 (strain 1330) GN=recA PE=3 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 156/197 (79%)

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPK
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPK 69

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++Q
Sbjct: 70  GRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQ 129

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + DTL+RSG++DV+VVDSVAAL P+ E++GEMGD+   +QARLMSQALRKL
Sbjct: 130 PDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 239 SHSLSLSQTILIFINQV 255
           + S+S S  ++IFINQ+
Sbjct: 190 TGSISRSNCMVIFINQI 206

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

>sp|P65975|RECA_BRUME Protein RecA OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=recA PE=3 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 156/197 (79%)

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPK
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPK 69

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++Q
Sbjct: 70  GRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQ 129

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + DTL+RSG++DV+VVDSVAAL P+ E++GEMGD+   +QARLMSQALRKL
Sbjct: 130 PDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 239 SHSLSLSQTILIFINQV 255
           + S+S S  ++IFINQ+
Sbjct: 190 TGSISRSNCMVIFINQI 206

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

>sp|C0RJG9|RECA_BRUMB Protein RecA OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=recA PE=3 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 156/197 (79%)

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPK
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPK 69

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++Q
Sbjct: 70  GRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQ 129

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + DTL+RSG++DV+VVDSVAAL P+ E++GEMGD+   +QARLMSQALRKL
Sbjct: 130 PDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 239 SHSLSLSQTILIFINQV 255
           + S+S S  ++IFINQ+
Sbjct: 190 TGSISRSNCMVIFINQI 206

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.

Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
359484305	421	PREDICTED: DNA repair protein recA homol	0.915	0.589	0.843	1e-112
357449857	424	RecA [Medicago truncatula] gi|355484253|	0.929	0.594	0.796	1e-111
356532732	432	PREDICTED: DNA repair protein recA homol	0.933	0.585	0.803	1e-111
224087995	418	predicted protein [Populus trichocarpa]	0.915	0.593	0.831	1e-110
356561937	459	PREDICTED: DNA repair protein recA homol	0.918	0.542	0.836	1e-110
356558365	423	PREDICTED: DNA repair protein recA homol	0.907	0.581	0.768	1e-107
293332481	425	uncharacterized protein LOC100384162 [Ze	0.929	0.592	0.756	1e-98
356545731	442	PREDICTED: LOW QUALITY PROTEIN: DNA repa	0.859	0.527	0.820	2e-98
42569151	430	DNA repair protein recA-like 3 [Arabidop	0.922	0.581	0.778	3e-97
115441659	429	Os01g0901200 [Oryza sativa Japonica Grou	0.948	0.599	0.762	5e-97

>gi|359484305|ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Vitis vinifera] gi|297738654|emb|CBI27899.3| unnamed protein product [Vitis vinifera]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/255 (84%), Positives = 232/255 (90%), Gaps = 7/255 (2%)

Query: 1   MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEE 60
           MA LLRNAS LR  L +V       + FR G+L TS+Q CNFSSK +R+SKSDGSDS EE
Sbjct: 1   MARLLRNASSLRHSLFAV-------EGFRKGVLGTSSQFCNFSSKGRRRSKSDGSDSNEE 53

Query: 61  NMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGR 120
           N+SKK+LAL+QALDQIT+SFGKGSIMWLGRSV+ +HVPVVSTGSFALDI LG GGLPKGR
Sbjct: 54  NLSKKELALRQALDQITTSFGKGSIMWLGRSVSSKHVPVVSTGSFALDIVLGIGGLPKGR 113

Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD 180
           VVEIYGPEASGKTTLALHVIAEAQ+QGGYCVF+DAEHALDP+LAE IGV T+NLLL+QPD
Sbjct: 114 VVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLSQPD 173

Query: 181 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240
           CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH
Sbjct: 174 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 233

Query: 241 SLSLSQTILIFINQV 255
           SLSLSQTILIFINQV
Sbjct: 234 SLSLSQTILIFINQV 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449857|ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|AES65456.1| RecA [Medicago truncatula]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/260 (79%), Positives = 227/260 (87%), Gaps = 8/260 (3%)

Query: 1   MASLLRNASLLRRCLLSVSPPHPHPQSF--RGGMLETSTQICNFSS-KSKRKSKSDGSDS 57
           MA LLR+   L R        H  P  F  + G+L TS Q+ +FS+ K K++SKSDGSDS
Sbjct: 1   MARLLRSTFFLNRSFFH----HHLPTRFCSKNGVLGTS-QVLSFSTNKGKKRSKSDGSDS 55

Query: 58  GEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLP 117
           GEENMSKKDLALQQA+DQITS+FGKGSIMWLGR+V+P++VPVVSTGSFALDIALG  GLP
Sbjct: 56  GEENMSKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLP 115

Query: 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA 177
           KGRVVEI+GPEASGKTTLALHVIAEAQ+QGGYC FIDAEHALD SLAE+IGV TENLLL+
Sbjct: 116 KGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLS 175

Query: 178 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237
           QPDCGEQALSLVDTLIRSGS+DV+VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK
Sbjct: 176 QPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 235

Query: 238 LSHSLSLSQTILIFINQVFS 257
           L HSLSLSQ ILIFINQV S
Sbjct: 236 LCHSLSLSQCILIFINQVRS 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532732|ref|XP_003534925.1| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Glycine max]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/259 (80%), Positives = 230/259 (88%), Gaps = 6/259 (2%)

Query: 1   MASLLRNA--SLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSG 58
           MASLLRNA  SLL+R L            F+ G+L TS Q+ +FS++ KR+SKSDGSDSG
Sbjct: 1   MASLLRNANISLLKRSLFHSDLLTRF--CFKPGVLGTS-QVLSFSTR-KRRSKSDGSDSG 56

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           EEN+SKKDLALQQA+DQITS++GKGSIMWLGRSV P++VPVVSTGSFALDIALG GGLPK
Sbjct: 57  EENLSKKDLALQQAIDQITSAYGKGSIMWLGRSVAPKNVPVVSTGSFALDIALGVGGLPK 116

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GRVVEI+GPEASGKTTLALHVIAEAQ+QGGYC F+DAEHALD +LAE+IGV T+NLLL+Q
Sbjct: 117 GRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFVDAEHALDKTLAESIGVDTKNLLLSQ 176

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PDCGEQALSLVDTLIRSGSVD +VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL
Sbjct: 177 PDCGEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 236

Query: 239 SHSLSLSQTILIFINQVFS 257
            HSLSLSQ ILIFINQV S
Sbjct: 237 CHSLSLSQCILIFINQVRS 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087995|ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|222854260|gb|EEE91807.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/255 (83%), Positives = 229/255 (89%), Gaps = 7/255 (2%)

Query: 1   MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEE 60
           MA LLRNAS LRR L++       P+  R G+L TSTQICNF++K KRKSKSDGS+SGEE
Sbjct: 1   MARLLRNASSLRRALVA-------PEGIRRGVLGTSTQICNFATKGKRKSKSDGSESGEE 53

Query: 61  NMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGR 120
           NMSKK+LALQQALDQITS FGKG+IMW GRS  P++VPVVSTGSFALDIALG GG PKGR
Sbjct: 54  NMSKKELALQQALDQITSQFGKGAIMWFGRSEAPKNVPVVSTGSFALDIALGCGGFPKGR 113

Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD 180
           VVEI+GPEASGKTTLALHVIAEAQ+QGGYCVF+DAEHALD SLA+ IGV TENLLL+QPD
Sbjct: 114 VVEIFGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLSQPD 173

Query: 181 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240
           CGEQALSLVDTLIRSGSVDVVVVDSVAALVPK ELDGEMGDAHMAMQARLMSQALRKLSH
Sbjct: 174 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSH 233

Query: 241 SLSLSQTILIFINQV 255
           SLS SQTIL+FINQV
Sbjct: 234 SLSQSQTILVFINQV 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561937|ref|XP_003549233.1| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/257 (83%), Positives = 233/257 (90%), Gaps = 8/257 (3%)

Query: 1   MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEE 60
           MA LLRN SLL R L         P+ F+ GM+ TS QI +FSSK +R+SKSDGSDSGEE
Sbjct: 27  MARLLRNTSLLTRSLF-------FPKVFKLGMIGTS-QILSFSSKGRRRSKSDGSDSGEE 78

Query: 61  NMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGR 120
           NMSKK+LALQQALDQITS+FGKGSIMWLGRSV+P++VPVVSTGSFALD+ALG GGLPKGR
Sbjct: 79  NMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDVALGIGGLPKGR 138

Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD 180
           VVEIYGPEASGKTTLALHVIAEAQ+QGGYCVF+DAEHALD +LAE+IGV T NLLL+QPD
Sbjct: 139 VVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTTNLLLSQPD 198

Query: 181 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240
           CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH
Sbjct: 199 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 258

Query: 241 SLSLSQTILIFINQVFS 257
           +LSLSQTILIFINQV S
Sbjct: 259 ALSLSQTILIFINQVRS 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558365|ref|XP_003547477.1| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Glycine max]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/259 (76%), Positives = 222/259 (85%), Gaps = 13/259 (5%)

Query: 1   MASLLRNA--SLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSG 58
           MASLLRNA  SLL+R L      H    +    + +T  + C      KR+SKSDGSDSG
Sbjct: 1   MASLLRNANTSLLKRSLF-----HSDLLTIVVAVNQTGAEKC------KRRSKSDGSDSG 49

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           EENMSKKD+ALQQA+DQITS++GKGSIMWLGRS+ P++VPVVSTGSFALDIALG GGLPK
Sbjct: 50  EENMSKKDMALQQAIDQITSAYGKGSIMWLGRSMAPKNVPVVSTGSFALDIALGVGGLPK 109

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GRVVEI+GPEASGKTTLALH+IAEAQ+ GGYC F+DAEHALD +LAE+IGV T+NLLL+Q
Sbjct: 110 GRVVEIFGPEASGKTTLALHMIAEAQKLGGYCAFVDAEHALDKTLAESIGVDTKNLLLSQ 169

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PDCGEQALSLVDTLIRSGSVD +VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL
Sbjct: 170 PDCGEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 229

Query: 239 SHSLSLSQTILIFINQVFS 257
            HSLSLSQ IL+FINQV S
Sbjct: 230 CHSLSLSQCILVFINQVRS 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293332481|ref|NP_001170211.1| uncharacterized protein LOC100384162 [Zea mays] gi|224034357|gb|ACN36254.1| unknown [Zea mays] gi|414879173|tpg|DAA56304.1| TPA: putative recA DNA recombination family protein [Zea mays]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/255 (75%), Positives = 221/255 (86%), Gaps = 3/255 (1%)

Query: 1   MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEE 60
           M +LLR ASL RR + + +    HP+S++ G+  ++     F+SK+K+KS   G+DSGEE
Sbjct: 1   MTTLLRRASL-RRVIAAAAASSFHPESYKQGICGSTFHCREFASKAKKKS--SGTDSGEE 57

Query: 61  NMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGR 120
           NMSKKDLAL QA+DQITS+FGKG+IMWLGRS   R VPVVSTGS  LD+ALGTGGLPKGR
Sbjct: 58  NMSKKDLALHQAIDQITSAFGKGAIMWLGRSQGHRDVPVVSTGSLDLDMALGTGGLPKGR 117

Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD 180
           VVE+YGPEASGKTTLALHVIAEAQ+ GGYC F+DAEHALDP+LAE+IGV T NLLL+QPD
Sbjct: 118 VVEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIGVDTNNLLLSQPD 177

Query: 181 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240
           C EQALSLVDTLIRSGSVDVVVVDSVAALVPK ELDGEMGDAH+A+QARLMSQALRKLSH
Sbjct: 178 CAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHIALQARLMSQALRKLSH 237

Query: 241 SLSLSQTILIFINQV 255
           SLSLSQTIL+FINQ+
Sbjct: 238 SLSLSQTILLFINQI 252

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545731|ref|XP_003541289.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein recA homolog 3, mitochondrial-like [Glycine max]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/234 (82%), Positives = 210/234 (89%), Gaps = 1/234 (0%)

Query: 24  HPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKG 83
           H Q F+ G++ TS QI +FSSK +R+SKSDGSDS EENMSKK+LALQQALDQITS+FG G
Sbjct: 42  HLQGFKLGIIGTS-QILSFSSKGRRRSKSDGSDSDEENMSKKELALQQALDQITSAFGNG 100

Query: 84  SIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143
           SIMWLGRSV+P+ +PVVSTGSFALD+AL  GGLP G VVEIYGPEAS KT LALHVIAEA
Sbjct: 101 SIMWLGRSVSPKSLPVVSTGSFALDVALVIGGLPXGHVVEIYGPEASVKTILALHVIAEA 160

Query: 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVV 203
           Q+QGGYCVF+DAEHALD  LAE+IGV T NLLL+QPDCGEQALSLVDTLIRSGSVDV+VV
Sbjct: 161 QKQGGYCVFVDAEHALDKKLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVIVV 220

Query: 204 DSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
           DSVAALVPKGELDGEMG AHMAMQARLMSQALRKLSH+LS SQ ILIFINQV S
Sbjct: 221 DSVAALVPKGELDGEMGHAHMAMQARLMSQALRKLSHALSPSQCILIFINQVRS 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569151|ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis thaliana] gi|209572665|sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial; AltName: Full=Recombinase A homolog 3; Flags: Precursor gi|119935859|gb|ABM06015.1| At2g19490 [Arabidopsis thaliana] gi|330251794|gb|AEC06888.1| DNA repair protein recA-like 3 [Arabidopsis thaliana]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 200/257 (77%), Positives = 224/257 (87%), Gaps = 7/257 (2%)

Query: 1   MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEE 60
           MA +LRN   LR  L S        +  R  ++ TS Q+  F++K+K+KSKSDG+ S EE
Sbjct: 1   MARILRNVYSLRSSLFS-------SELLRRSVVGTSFQLRGFAAKAKKKSKSDGNGSSEE 53

Query: 61  NMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGR 120
            MSKK++ALQQALDQITSSFGKGSIM+LGR+V+PR+VPV STGSFALD+ALG GGLPKGR
Sbjct: 54  GMSKKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGR 113

Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD 180
           VVEIYGPEASGKTTLALHVIAEAQ+QGG CVF+DAEHALD SLA+ IGV TENLLL+QPD
Sbjct: 114 VVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPD 173

Query: 181 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240
           CGEQALSLVDTLIRSGSVDV+VVDSVAALVPKGEL+GEMGDAHMAMQARLMSQALRKLSH
Sbjct: 174 CGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSH 233

Query: 241 SLSLSQTILIFINQVFS 257
           SLSLSQT+LIFINQV S
Sbjct: 234 SLSLSQTLLIFINQVRS 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441659|ref|NP_001045109.1| Os01g0901200 [Oryza sativa Japonica Group] gi|56784510|dbj|BAD82767.1| putative recA protein [Oryza sativa Japonica Group] gi|56784869|dbj|BAD82109.1| putative recA protein [Oryza sativa Japonica Group] gi|113534640|dbj|BAF07023.1| Os01g0901200 [Oryza sativa Japonica Group] gi|222619696|gb|EEE55828.1| hypothetical protein OsJ_04434 [Oryza sativa Japonica Group]

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/257 (76%), Positives = 225/257 (87%)

Query: 1   MASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEE 60
           MA+LLR ASL R      +   P P+S++ G+  ++     FSSK+K+K+KS G+DSGEE
Sbjct: 1   MANLLRRASLRRAVAAVAAAAAPCPESYKQGICGSTFHCRYFSSKAKKKTKSSGTDSGEE 60

Query: 61  NMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGR 120
           N+SKKDLAL QA+DQITS+FGKG+IMWLGRS   R VPVVSTGSF+LD+ALGTGGLPKGR
Sbjct: 61  NLSKKDLALHQAIDQITSAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKGR 120

Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD 180
           V+E+YGPEASGKTTLALHVIAEAQ+ GGYC F+DAEHALDP+LAE+IGV T NLLL+QPD
Sbjct: 121 VIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPD 180

Query: 181 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240
           CGEQALSLVDTLIRSGSVDVVVVDSVAALVPK ELDGEMGDAH+A+QARLMSQALRKLSH
Sbjct: 181 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHVALQARLMSQALRKLSH 240

Query: 241 SLSLSQTILIFINQVFS 257
           SLSLSQTIL+FINQ+ S
Sbjct: 241 SLSLSQTILLFINQIRS 257

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2050439	430	RECA2 "A. thaliana recA homolo	0.845	0.532	0.746	9.1e-84
TIGR_CMR|CHY_1166	343	CHY_1166 "recA protein" [Carbo	0.715	0.565	0.582	4.2e-56
TIGR_CMR|BA_3915	343	BA_3915 "recA protein, group I	0.712	0.562	0.577	1.8e-55
UNIPROTKB|P16971	348	recA "Protein RecA" [Bacillus	0.712	0.554	0.577	4.8e-55
TIGR_CMR|CBU_1054	343	CBU_1054 "recA protein" [Coxie	0.715	0.565	0.567	1.5e-53
TIGR_CMR|GSU_0145	338	GSU_0145 "recA protein" [Geoba	0.708	0.568	0.552	2.4e-53
UNIPROTKB|P0A5U4	790	recA "Protein RecA" [Mycobacte	0.701	0.240	0.570	3.9e-53
TIGR_CMR|NSE_0530	327	NSE_0530 "recA protein" [Neori	0.701	0.581	0.561	4.9e-53
TIGR_CMR|SPO_2034	347	SPO_2034 "recA protein" [Ruege	0.704	0.550	0.570	4.9e-53
UNIPROTKB|P0A7G6	353	recA [Escherichia coli K-12 (t	0.712	0.546	0.578	8e-53

TAIR|locus:2050439 RECA2 "A. thaliana recA homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 171/229 (74%), Positives = 187/229 (81%)

Query:    29 RGGMLETSTQICNFXXXXXXXXXXXXXXXXEENMSKKDLALQQALDQITSSFGKGSIMWL 88
             R  ++ TS Q+  F                EE MSKK++ALQQALDQITSSFGKGSIM+L
Sbjct:    22 RRSVVGTSFQLRGFAAKAKKKSKSDGNGSSEEGMSKKEIALQQALDQITSSFGKGSIMYL 81

Query:    89 GRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG 148
             GR+V+PR+VPV STGSFALD+ALG GGLPKGRVVEIYGPEASGKTTLALHVIAEAQ+QGG
Sbjct:    82 GRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGG 141

Query:   149 YCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXX 208
              CVF+DAEHALD SLA+ IGV TENLLL+QPDCGEQALSLVDTLIRSG            
Sbjct:   142 TCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAA 201

Query:   209 LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
             LVPKGEL+GEMGDAHMAMQARLMSQALRKLSHSLSLSQT+LIFINQV S
Sbjct:   202 LVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQTLLIFINQVRS 250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006259 "DNA metabolic process" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA;ISS

GO:0009432 "SOS response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TIGR_CMR|CHY_1166 CHY_1166 "recA protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 113/194 (58%), Positives = 145/194 (74%)

Query:    62 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 121
             M+ K  AL+  + QI   FGKGSIM LG +     V V+ TGS ALD+ALG GG+P+GRV
Sbjct:     1 MNDKLKALELTISQIEKQFGKGSIMRLGENTGKFQVEVIPTGSLALDLALGVGGVPRGRV 60

Query:   122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 181
             VEI+GPE+SGKTT+ALH+IAEAQ+ GG   FIDAEHALDP  A+ +GV  ENLL++QPD 
Sbjct:    61 VEIFGPESSGKTTVALHIIAEAQKMGGIAAFIDAEHALDPVYAQKLGVDIENLLVSQPDT 120

Query:   182 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241
             GEQAL + ++L+RSG            LVP+ E++GEMGDAH+ +QARLMSQALRKL+ +
Sbjct:   121 GEQALEIAESLVRSGAIDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGA 180

Query:   242 LSLSQTILIFINQV 255
             +S S+T+ IFINQ+
Sbjct:   181 ISKSKTVAIFINQM 194

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

TIGR_CMR|BA_3915 BA_3915 "recA protein, group I intron-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 112/194 (57%), Positives = 140/194 (72%)

Query:    62 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 121
             MS +  AL  AL QI   FGKGSIM LG     R V  VS+GS ALD+ALG GG P+GR+
Sbjct:     1 MSDRQAALDMALKQIEKQFGKGSIMKLGEQAE-RKVSTVSSGSLALDVALGVGGYPRGRI 59

Query:   122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 181
             +EIYGPE+SGKTT++LH IAE QRQGG   FIDAEHA+DP  A+ +GV  + LLL+QPD 
Sbjct:    60 IEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDT 119

Query:   182 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241
             GEQ L + + L+RSG            LVPK E++G+MGD+H+ +QARLMSQALRKLS +
Sbjct:   120 GEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGA 179

Query:   242 LSLSQTILIFINQV 255
             ++ S+TI IFINQ+
Sbjct:   180 INKSKTIAIFINQI 193

GO:0003677 "DNA binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

UNIPROTKB|P16971 recA "Protein RecA" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 112/194 (57%), Positives = 139/194 (71%)

Query:    62 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 121
             MS +  AL  AL QI   FGKGSIM LG     R +  V +GS ALD ALG GG P+GR+
Sbjct:     1 MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR-ISTVPSGSLALDTALGIGGYPRGRI 59

Query:   122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 181
             +E+YGPE+SGKTT+ALH IAE Q+QGG   FIDAEHALDP  A+ +GV  E LLL+QPD 
Sbjct:    60 IEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDT 119

Query:   182 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241
             GEQAL + + L+RSG            LVPK E++G+MGD+H+ +QARLMSQALRKLS +
Sbjct:   120 GEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGA 179

Query:   242 LSLSQTILIFINQV 255
             ++ S+TI IFINQ+
Sbjct:   180 INKSKTIAIFINQI 193

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CBU_1054 CBU_1054 "recA protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 110/194 (56%), Positives = 135/194 (69%)

Query:    62 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 121
             M  +  AL  AL QI   FGKGS+M LG       + V+STGS  LDIALG GGLP+GR+
Sbjct:     1 MDNRSNALNAALSQIERQFGKGSVMRLGDPGLIPDIDVISTGSLGLDIALGVGGLPRGRI 60

Query:   122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 181
             +EIYGPEASGKTTLAL  IA  QR GG   F+DAEHALD   A  +GVK E+LL++QPD 
Sbjct:    61 IEIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKLGVKVEDLLVSQPDT 120

Query:   182 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241
             GEQAL + D L+RSG            L PK E++G+MGD+HM +QARLMSQALRKL+ +
Sbjct:   121 GEQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 180

Query:   242 LSLSQTILIFINQV 255
             +  S T++IFINQ+
Sbjct:   181 IKKSNTLVIFINQI 194

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

TIGR_CMR|GSU_0145 GSU_0145 "recA protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 106/192 (55%), Positives = 139/192 (72%)

Query:    64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 123
             +++ A++ AL QI   FGKG+IM LG       V  + TGS +LD+ALG GG+P+GR++E
Sbjct:     4 EREKAIELALSQIEKQFGKGAIMRLGADEALPDVAAIPTGSLSLDLALGVGGVPRGRIIE 63

Query:   124 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183
             IYGPE+SGKTTLALH+ AEAQ+ GG   F+DAEHALD   A  +GVKT++LL++QPD GE
Sbjct:    64 IYGPESSGKTTLALHIAAEAQKMGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGE 123

Query:   184 QALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243
             QAL + + L+RSG            LVPK E++GEMGD+HM +QARLMSQALRKL+  +S
Sbjct:   124 QALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGIIS 183

Query:   244 LSQTILIFINQV 255
              S   +IFINQ+
Sbjct:   184 KSNCCVIFINQI 195

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

UNIPROTKB|P0A5U4 recA "Protein RecA" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 551 (199.0 bits), Expect = 3.9e-53, P = 3.9e-53
 Identities = 109/191 (57%), Positives = 141/191 (73%)

Query:    65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
             ++ AL+ A+ QI  S+GKGS+M LG     + + V+ TGS ALD+ALG GGLP+GRV+EI
Sbjct:     7 REKALELAVAQIEKSYGKGSVMRLGDEAR-QPISVIPTGSIALDVALGIGGLPRGRVIEI 65

Query:   125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
             YGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T++LL++QPD GEQ
Sbjct:    66 YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125

Query:   185 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
             AL + D LIRSG            LVP+ EL+GEMGD+H+ +QARLMSQALRK++ +L+ 
Sbjct:   126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185

Query:   245 SQTILIFINQV 255
             S T  IFINQ+
Sbjct:   186 SGTTAIFINQL 196

GO:0000150 "recombinase activity" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0000725 "recombinational repair" evidence=IMP

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0004520 "endodeoxyribonuclease activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IGI;IEP

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0009650 "UV protection" evidence=IMP

GO:0016887 "ATPase activity" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0042148 "strand invasion" evidence=IDA

GO:0046677 "response to antibiotic" evidence=IEP

TIGR_CMR|NSE_0530 NSE_0530 "recA protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 109/194 (56%), Positives = 141/194 (72%)

Query:    62 MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 121
             M+++D AL+  + QI   FGKGSIM   +   P  V  +STGS  LD ALG GG+PKGR+
Sbjct:     1 MNRED-ALKGVVVQIEKMFGKGSIMTFSQE--PASVECISTGSIGLDSALG-GGIPKGRI 56

Query:   122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDC 181
             +EI+GPE+SGKTTL LH+IAEAQ+ GG C FIDAEHALDP  A  +GVK E LL++QPD 
Sbjct:    57 IEIFGPESSGKTTLTLHIIAEAQKNGGTCAFIDAEHALDPVYARRLGVKIEELLISQPDT 116

Query:   182 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241
             GEQAL +VD+LI+SG            L PK E++GEMGD H+ +QARL+SQALRK++ S
Sbjct:   117 GEQALEIVDSLIKSGAVDVIVVDSVAALTPKAEIEGEMGDLHVGLQARLLSQALRKITAS 176

Query:   242 LSLSQTILIFINQV 255
             +S S  +++FINQ+
Sbjct:   177 VSRSNCVVVFINQI 190

GO:0003677 "DNA binding" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

TIGR_CMR|SPO_2034 SPO_2034 "recA protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 109/191 (57%), Positives = 134/191 (70%)

Query:    65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
             K  AL  AL QI   FGKGSIM LG     + +   STGS  LDIALG GGLP GR+VEI
Sbjct:     9 KQKALDSALAQIERQFGKGSIMRLGGENAIQEIEASSTGSLGLDIALGIGGLPMGRIVEI 68

Query:   125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
             YGPE+SGKTTL LH IAE Q++GG C F+DAEHALDP  A  +GV  + LL++QPD GEQ
Sbjct:    69 YGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTGEQ 128

Query:   185 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
             AL + DTL+RSG            L PK EL+G+MGD+ + + ARLMSQA+RKL+ S+S 
Sbjct:   129 ALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSISR 188

Query:   245 SQTILIFINQV 255
             S+ ++IFINQ+
Sbjct:   189 SKCMVIFINQI 199

GO:0003677 "DNA binding" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0009432 "SOS response" evidence=ISS

UNIPROTKB|P0A7G6 recA [Escherichia coli K-12 (taxid:83333)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 114/197 (57%), Positives = 136/197 (69%)

Query:    59 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
             +EN  K   AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP 
Sbjct:     4 DENKQK---ALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPM 59

Query:   119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
             GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +Q
Sbjct:    60 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 119

Query:   179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKL 238
             PD GEQAL + D L RSG            L PK E++GE+GD+HM + AR+MSQA+RKL
Sbjct:   120 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179

Query:   239 SHSLSLSQTILIFINQV 255
             + +L  S T+LIFINQ+
Sbjct:   180 AGNLKQSNTLLIFINQI 196

GO:0003697 "single-stranded DNA binding" evidence=IEA;IDA

GO:0048870 "cell motility" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA;IEP

GO:0009432 "SOS response" evidence=IEA;IMP

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006259 "DNA metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUP2	RECA3_ARATH	No assigned EC number	0.7782	0.9225	0.5813	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VI2051	hypothetical protein (418 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.74560001	Predicted protein (216 aa)	•						•		0.480
	estExt_Genewise1_v1.C_LG_X6520	hypothetical protein (888 aa)	•		•				•		0.455

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
PRK09354	349	PRK09354, recA, recombinase A; Provisional	1e-123
cd00983	325	cd00983, recA, RecA is a bacterial enzyme which ha	1e-116
pfam00154	322	pfam00154, RecA, recA bacterial DNA recombination	1e-111
TIGR02012	321	TIGR02012, tigrfam_recA, protein RecA	1e-109
PRK09519	790	PRK09519, recA, DNA recombination protein RecA; Re	2e-73
COG0468	279	COG0468, RecA, RecA/RadA recombinase [DNA replicat	5e-70
cd01393	226	cd01393, recA_like, RecA is a bacterial enzyme whi	7e-60
cd01123	235	cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B	3e-16
TIGR02237	209	TIGR02237, recomb_radB, DNA repair and recombinati	1e-15
cd01394	218	cd01394, radB, RadB	6e-15
PRK09361	225	PRK09361, radB, DNA repair and recombination prote	4e-14
cd01120	165	cd01120, RecA-like_NTPases, RecA-like NTPases	2e-12
COG0467	260	COG0467, RAD55, RecA-superfamily ATPases implicate	1e-09
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-08
TIGR02238	313	TIGR02238, recomb_DMC1, meiotic recombinase Dmc1	4e-07
TIGR03880	224	TIGR03880, KaiC_arch_3, KaiC domain protein, AF_03	9e-07
pfam06745	231	pfam06745, KaiC, KaiC	1e-06
cd01121	372	cd01121, Sms, Sms (bacterial radA) DNA repair prot	2e-06
TIGR03881	229	TIGR03881, KaiC_arch_4, KaiC domain protein, PAE11	8e-06
PRK11823	446	PRK11823, PRK11823, DNA repair protein RadA; Provi	2e-05
PRK09302	509	PRK09302, PRK09302, circadian clock protein KaiC;	2e-05
pfam08423	261	pfam08423, Rad51, Rad51	2e-05
PRK04301	317	PRK04301, radA, DNA repair and recombination prote	3e-05
PLN03187	344	PLN03187, PLN03187, meiotic recombination protein	6e-05
PLN03186	342	PLN03186, PLN03186, DNA repair protein RAD51 homol	2e-04
COG1066	456	COG1066, Sms, Predicted ATP-dependent serine prote	4e-04
PTZ00035	337	PTZ00035, PTZ00035, Rad51 protein; Provisional	5e-04
TIGR02236	310	TIGR02236, recomb_radA, DNA repair and recombinati	5e-04
TIGR02239	316	TIGR02239, recomb_RAD51, DNA repair protein RAD51	0.001
pfam13481	154	pfam13481, AAA_25, AAA domain	0.001
TIGR03600	420	TIGR03600, phage_DnaB, phage replicative helicase,	0.002
pfam13479	201	pfam13479, AAA_24, AAA domain	0.002
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	0.003
TIGR00416	454	TIGR00416, sms, DNA repair protein RadA	0.004

>gnl|CDD|236476 PRK09354, recA, recombinase A; Provisional

 Score =  353 bits (908), Expect = e-123
 Identities = 128/195 (65%), Positives = 155/195 (79%), Gaps = 1/195 (0%)

Query: 61  NMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGR 120
              +K  AL+ AL QI   FGKGSIM LG       V V+STGS ALDIALG GGLP+GR
Sbjct: 3   MDEEKQKALEAALKQIEKQFGKGSIMRLGDD-AAMDVEVISTGSLALDIALGIGGLPRGR 61

Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD 180
           +VEIYGPE+SGKTTLALH IAEAQ+ GG   FIDAEHALDP  A+ +GV  +NLL++QPD
Sbjct: 62  IVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPD 121

Query: 181 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240
            GEQAL + DTL+RSG+VD++VVDSVAALVPK E++GEMGD+H+ +QARLMSQALRKL+ 
Sbjct: 122 TGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 181

Query: 241 SLSLSQTILIFINQV 255
           ++S S T +IFINQ+
Sbjct: 182 NISKSNTTVIFINQI 196

Length = 349

>gnl|CDD|238483 cd00983, recA, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

 Score =  337 bits (866), Expect = e-116
 Identities = 124/192 (64%), Positives = 154/192 (80%), Gaps = 1/192 (0%)

Query: 64  KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 123
           +K  AL+ AL QI   FGKGSIM LG     + V V+ TGS +LDIALG GG PKGR++E
Sbjct: 1   EKQKALELALKQIEKKFGKGSIMKLGDDAV-QDVEVIPTGSLSLDIALGIGGYPKGRIIE 59

Query: 124 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183
           IYGPE+SGKTTLALH IAEAQ+ GG   FIDAEHALDP  A+ +GV  +NLL++QPD GE
Sbjct: 60  IYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGE 119

Query: 184 QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243
           QAL + D+L+RSG+VD++VVDSVAALVPK E++GEMGD+H+ +QARLMSQALRKL+ S++
Sbjct: 120 QALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSIN 179

Query: 244 LSQTILIFINQV 255
            S T +IFINQ+
Sbjct: 180 KSNTTVIFINQL 191

RecA couples ATP hydrolysis to DNA strand exchange. Length = 325

>gnl|CDD|215755 pfam00154, RecA, recA bacterial DNA recombination protein

 Score =  324 bits (832), Expect = e-111
 Identities = 125/188 (66%), Positives = 151/188 (80%), Gaps = 1/188 (0%)

Query: 68  ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGP 127
           AL+ AL QI   FGKGSIM LG       V V+STGS  LDIALG GGLPKGR++EIYGP
Sbjct: 2   ALEAALSQIEKQFGKGSIMRLGDKTVED-VEVISTGSLGLDIALGIGGLPKGRIIEIYGP 60

Query: 128 EASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS 187
           E+SGKTTLALH IAEAQ+ GG   FIDAEHALDP  A+ +GV  +NLL++QPD GEQAL 
Sbjct: 61  ESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALE 120

Query: 188 LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 247
           + D L+RSG+VD++VVDSVAALVPK E++GEMGD+H+ +QARLMSQALRKL+ ++S S T
Sbjct: 121 IADMLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNT 180

Query: 248 ILIFINQV 255
            +IFINQ+
Sbjct: 181 TVIFINQI 188

RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. Length = 322

>gnl|CDD|162659 TIGR02012, tigrfam_recA, protein RecA

 Score =  318 bits (816), Expect = e-109
 Identities = 124/192 (64%), Positives = 153/192 (79%), Gaps = 1/192 (0%)

Query: 64  KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVE 123
           +K  AL+ AL QI   FGKGSIM LG   +   V  +STGS +LD+ALG GGLP+GR++E
Sbjct: 1   EKQKALEAALAQIEKQFGKGSIMRLGEK-SVMDVETISTGSLSLDLALGVGGLPRGRIIE 59

Query: 124 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183
           IYGPE+SGKTTLALH IAEAQ+ GG   FIDAEHALDP  A  +GV  +NLL++QPD GE
Sbjct: 60  IYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGE 119

Query: 184 QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243
           QAL + +TL+RSG+VD++VVDSVAALVPK E++GEMGD+H+ +QARLMSQALRKL+ +LS
Sbjct: 120 QALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALS 179

Query: 244 LSQTILIFINQV 255
            S T  IFINQ+
Sbjct: 180 KSNTTAIFINQI 191

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage [DNA metabolism, DNA replication, recombination, and repair]. Length = 321

>gnl|CDD|77219 PRK09519, recA, DNA recombination protein RecA; Reviewed

 Score =  238 bits (609), Expect = 2e-73
 Identities = 117/191 (61%), Positives = 153/191 (80%), Gaps = 1/191 (0%)

Query: 65  KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
           ++ AL+ A+ QI  S+GKGS+M LG     + + V+ TGS ALD+ALG GGLP+GRV+EI
Sbjct: 7   REKALELAVAQIEKSYGKGSVMRLGDEAR-QPISVIPTGSIALDVALGIGGLPRGRVIEI 65

Query: 125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
           YGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T++LL++QPD GEQ
Sbjct: 66  YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125

Query: 185 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
           AL + D LIRSG++D+VV+DSVAALVP+ EL+GEMGD+H+ +QARLMSQALRK++ +L+ 
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185

Query: 245 SQTILIFINQV 255
           S T  IFINQ+
Sbjct: 186 SGTTAIFINQL 196

Length = 790

>gnl|CDD|223544 COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair]

 Score =  216 bits (553), Expect = 5e-70
 Identities = 104/202 (51%), Positives = 137/202 (67%), Gaps = 8/202 (3%)

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
                 ++ AL+ AL QI  +FGKGSIM LG       +  +STGS ALD ALG GGLP+
Sbjct: 1   MAQGIDEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALG-GGLPR 59

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV-KTENLLLA 177
           GR+ EIYGPE+SGKTTLAL ++A AQ+ GG   FID EHALDP  A+ +GV   +NLL++
Sbjct: 60  GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVS 119

Query: 178 QPDCGEQALSLVDTLIRSGS--VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 235
           QPD GEQ L + + L RSG+  +D++VVDSVAALV   E+     D H+ ++ARL+S+AL
Sbjct: 120 QPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEI----EDGHLGLRARLLSKAL 175

Query: 236 RKLSHSLSLSQTILIFINQVFS 257
           RKL+   +   T +IF NQV +
Sbjct: 176 RKLTRLANKYNTAVIFTNQVRA 197

Length = 279

>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

 Score =  188 bits (481), Expect = 7e-60
 Identities = 75/175 (42%), Positives = 97/175 (55%), Gaps = 22/175 (12%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFI 153
           +STGS ALD  LG GG+P GR+ EI+G   SGKT L L +  EAQ  G      G  V+I
Sbjct: 1   ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYI 59

Query: 154 DAEHALDPSLAETIGVK--------TENLLLAQPDCGEQALSLVDTLIR---SGSVDVVV 202
           D E A  P     + V+         +N+ +A+P  GEQ L +V+ L R   SG VD+VV
Sbjct: 60  DTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVV 119

Query: 203 VDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
           VDSVAAL  K  +   M    +A +ARL+SQALRKL          ++F NQV +
Sbjct: 120 VDSVAALFRKEFIGRGM----LAERARLLSQALRKLLRLADKFNVAVVFTNQVRA 170

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. Length = 226

>gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 23/174 (13%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGY---CVFI 153
           ++TGS ALD  LG GG+  G + EI+G   SGKT L   +    Q     GG     V+I
Sbjct: 1   LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI 59

Query: 154 DAEHALDP----SLAETIGVKTENLL----LAQP-DCGEQAL---SLVDTLIRSGSVDVV 201
           D E    P     +AE  G+  E +L    +A+  +   Q      L   LI S  + +V
Sbjct: 60  DTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLV 119

Query: 202 VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
           +VDSV AL    E DG    A        + + L++L+   +++   ++  NQV
Sbjct: 120 IVDSVTALFRA-EFDGRGELAERQQHLAKLLRTLKRLADEFNVA---VVITNQV 169

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . Length = 235

>gnl|CDD|233793 TIGR02237, recomb_radB, DNA repair and recombination protein RadB

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 22/176 (12%)

Query: 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----S 162
           +D  LG GG+ +G + +IYGP  SGKT + + +   A RQG   V+ID E  L P     
Sbjct: 1   IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE-GLSPERFKQ 58

Query: 163 LAETIGVKT-ENLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGE 218
           +AE    +   N ++ +    D    A+      I   S  +VVVDS  AL  + EL  +
Sbjct: 59  IAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALY-RLELSDD 117

Query: 219 MGDAHMAMQARLMSQALRKLSHSLSLSQT---ILIFINQVFSINLNKIIDESSGHL 271
               +  +         R+L+  LSL++     ++  NQV++   N  +    GHL
Sbjct: 118 RISRNRELA--------RQLTLLLSLARKKNLAVVITNQVYTDVNNGTLRPLGGHL 165

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). Length = 209

>gnl|CDD|238688 cd01394, radB, RadB

 Score = 71.3 bits (175), Expect = 6e-15
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159
           + TG   LD  LG GG+ +G V ++YGP  +GKT +A+ +  E   QG    +ID E   
Sbjct: 1   LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS 59

Query: 160 DPSLAETIGVKTE----NLLLAQP-DCGEQALSLVDTL-IRSGSVDVVVVDSVAALV-PK 212
                +  G + E    ++++ +P D  EQ  ++ +T       VD+VVVDS  AL   +
Sbjct: 60  SERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYRLE 119

Query: 213 GELDGEMGDAH--MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258
              D      +  +A Q   +    RK  H ++     ++  NQV+S 
Sbjct: 120 LGDDDTTIKNYRELAKQLTFLLWLARK--HDVA-----VVITNQVYSD 160

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. Length = 218

>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB; Provisional

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 25/185 (13%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--- 156
           + TG   LD  LG GG  +G + +IYGP  SGKT + L +  EA + G   ++ID E   
Sbjct: 5   LPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLS 63

Query: 157 ----HALDPSLAETIGVKTENLLLAQP-DCGEQALSLVDT-LIRSGSVDVVVVDSVAALV 210
                 +     E +     N+++ +P    EQ+ ++     +   +V ++V+DS  +L 
Sbjct: 64  PERFKQIAGEDFEEL---LSNIIIFEPSSFEEQSEAIRKAEKLAKENVGLIVLDSATSLY 120

Query: 211 PKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT----ILIFINQVFSINLNKIIDE 266
            + EL+ E  D      ++L  +  R+L+H L L++     ++I  NQV+S   +  +  
Sbjct: 121 -RLELEDE-ED-----NSKLNRELGRQLTHLLKLARKHDLAVVI-TNQVYSDIDSDGLRP 172

Query: 267 SSGHL 271
             GH 
Sbjct: 173 LGGHT 177

Length = 225

>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 15/143 (10%)

Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKTENLLL 176
           ++ ++GP  SGKTTLAL +      +GG  V++D E  ++      + E++    +NL++
Sbjct: 1   LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLII 60

Query: 177 AQPDCGEQALSLVDT----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS 232
                 + A + + +    L   G  D++++D +  LV       E     +  + R + 
Sbjct: 61  VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELL 120

Query: 233 QALRKLSHSLSLSQTILIFINQV 255
           +  RK   +       +IF  QV
Sbjct: 121 ERARKGGVT-------VIFTLQV 136

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Length = 165

>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 24/133 (18%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--- 156
           + TG   LD  LG GGLP+G VV I GP  +GKT  AL  + E  R+G   +++  E   
Sbjct: 5   IPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63

Query: 157 ---HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT-----------------LIRSG 196
                   S    + V  E   LA  D       LV                   ++   
Sbjct: 64  EELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKE 123

Query: 197 SVDVVVVDSVAAL 209
             D VV+DS+  L
Sbjct: 124 GADRVVIDSITEL 136

Length = 260

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA 177
            G V+ I GP  SGKTTLA  +  E    GG  ++ID E  L+  L + + +       +
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 178 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237
               GE  L L   L R    DV+++D + +L+   +    +    + +   L S+    
Sbjct: 61  --GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118

Query: 238 L 238
           +
Sbjct: 119 V 119

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|131292 TIGR02238, recomb_DMC1, meiotic recombinase Dmc1

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 34/184 (18%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLA--LHVIAEAQRQGGY----C 150
           V  ++TGS ALD  LG GG+    + E++G    GKT L+  L V A+  R+ G      
Sbjct: 75  VLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKV 133

Query: 151 VFIDAEHALDP----SLAETIGVK----TENLLLAQPDCGEQALSLVDTL---IRSGSVD 199
            +ID E    P    ++AE  GV      +N+L A+    E  + L+D L          
Sbjct: 134 AYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFR 193

Query: 200 VVVVDSVAALVP-----KGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI-N 253
           +++VDS+ AL       +GEL         + + + ++Q L +L+  +S    + +F+ N
Sbjct: 194 LLIVDSIMALFRVDFSGRGEL---------SERQQKLAQMLSRLNK-ISEEFNVAVFVTN 243

Query: 254 QVFS 257
           QV +
Sbjct: 244 QVQA 247

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. Length = 313

>gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 14/116 (12%)

Query: 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL--A 164
           LD  LG GG P+G V+ + G   +GKTT +L  + +  + G   ++I  E   +  L  A
Sbjct: 5   LDEMLG-GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYA 63

Query: 165 ETIGVKTE-----NLLLAQPDCGEQALSL------VDTLIRSGSVDVVVVDSVAAL 209
           ++ G   E     +L + + D  +   SL      +  LI+      VV+D ++ L
Sbjct: 64  KSKGWDLEDYIDKSLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLL 119

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. Length = 224

>gnl|CDD|219158 pfam06745, KaiC, KaiC

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 46/181 (25%), Positives = 65/181 (35%), Gaps = 42/181 (23%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-CVFIDA-EH 157
           V TG   LD  +  GG+P+GRVV I G   +GKT   L  +     + G   V++   E 
Sbjct: 1   VPTGIPGLD-EILKGGIPRGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEP 59

Query: 158 ALDPSL---AETIGVKTENL----------LLAQPDCGEQAL------SLVDTL---IRS 195
             D  L   A++ G   E L                   +         L++ L   IR 
Sbjct: 60  PED--LRENAKSFGWDLEKLEEEGKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIRE 117

Query: 196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS-LSQTILIFINQ 254
                VV+DS+  L                  AR   + LR+L   L  L  T  IF ++
Sbjct: 118 IGAKRVVIDSITTLYLL----------LKPAMAR---EILRRLKRVLKKLGVTA-IFTSE 163

Query: 255 V 255
            
Sbjct: 164 K 164

This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria. Length = 231

>gnl|CDD|238541 cd01121, Sms, Sms (bacterial radA) DNA repair protein

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 90  RSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149
             +       + TG   LD  LG GGL  G V+ I G    GK+TL L V A   ++GG 
Sbjct: 54  SDIEAEEEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGK 112

Query: 150 CVFIDAEHALDP--SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSV 206
            +++  E + +     A+ +G+ TENL L      E  L  +   I     D+V++DS+
Sbjct: 113 VLYVSGEESPEQIKLRADRLGISTENLYLLA----ETNLEDILASIEELKPDLVIIDSI 167

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. Length = 372

>gnl|CDD|163593 TIGR03881, KaiC_arch_4, KaiC domain protein, PAE1156 family

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159
           +STG   LD  L  GG+P+G  V + G   +GKT   LH   +  R G   +++  E + 
Sbjct: 2   LSTGVEGLDKLL-EGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESR 60

Query: 160 D 160
           +
Sbjct: 61  E 61

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. Length = 229

>gnl|CDD|236994 PRK11823, PRK11823, DNA repair protein RadA; Provisional

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 15/122 (12%)

Query: 91  SVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC 150
            +     P +STG   LD  LG GGL  G VV I G    GK+TL L V A     GG  
Sbjct: 53  DIEAEEEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKV 111

Query: 151 VFIDAEHALDPSL------AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVD 204
           +++  E     S       AE +G+ ++NL L      E  L  +   I     D+VV+D
Sbjct: 112 LYVSGEE----SASQIKLRAERLGLPSDNLYLLA----ETNLEAILATIEEEKPDLVVID 163

Query: 205 SV 206
           S+
Sbjct: 164 SI 165

Length = 446

>gnl|CDD|236461 PRK09302, PRK09302, circadian clock protein KaiC; Reviewed

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159
           +S+G   LD  LG GG  +G ++ + G   +GKT LA      A R+G  C+    E + 
Sbjct: 255 ISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESR 313

Query: 160 DPSL--AETIGVK-----TENLLLAQPD----CG-EQALSLVDTLIRSGSVDVVVVDSVA 207
              +  A + G+       + LL          G E  L ++   I       V +D ++
Sbjct: 314 AQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLS 373

Query: 208 ALVPKGEL 215
           AL   G L
Sbjct: 374 ALARGGSL 381

Length = 509

>gnl|CDD|117002 pfam08423, Rad51, Rad51

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 40/206 (19%)

Query: 76  ITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTL 135
           +   F   + +   RS   R    ++TGS  LD  LG GG+  G + E++G   +GKT L
Sbjct: 5   VPMGFTTATELHQRRSEVIR----ITTGSKELDKLLG-GGIETGSITEVFGEFRTGKTQL 59

Query: 136 ALHVIA-------EAQRQGGYCVFIDAEHALDP----SLAETIGVKTE----NLLLAQPD 180
             H +        E     G  ++ID E    P    ++AE  G+  E    N+  A+  
Sbjct: 60  C-HTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERIVAIAERFGLDPEEVLDNIAYARAY 118

Query: 181 CGEQALSLVDT---LIRSGSVDVVVVDSVAALVP-----KGELDGEMGDAHMAMQARLMS 232
             E  + L+     ++      +++VDS  AL       +GEL         A + + ++
Sbjct: 119 NTEHQMQLLLQAAAMMSESRFALLIVDSATALYRTDFSGRGEL---------AERQQHLA 169

Query: 233 QALRKLSHSLSLSQTILIFI-NQVFS 257
           + LR L   L+    + + I NQV +
Sbjct: 170 KFLRSLQR-LADEFGVAVVITNQVVA 194

Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein. Length = 261

>gnl|CDD|235273 PRK04301, radA, DNA repair and recombination protein RadA; Validated

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 19/127 (14%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKT----TLALHVIAEAQRQG--GYCVFI 153
           ++TGS  LD  LG GG+    + E YG   SGKT     LA++V    ++ G  G  V+I
Sbjct: 84  ITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYI 142

Query: 154 DAEHALDP----SLAETIGVKTE----NLLLAQPDCGEQALSLVD---TLIRSG-SVDVV 201
           D E    P     +AE +G+  +    N+ +A+    +  + L +    LI+ G ++ +V
Sbjct: 143 DTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLV 202

Query: 202 VVDSVAA 208
           +VDS+ A
Sbjct: 203 IVDSLTA 209

Length = 317

>gnl|CDD|215620 PLN03187, PLN03187, meiotic recombination protein DMC1 homolog; Provisional

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 25/139 (17%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA----QRQGGYC---VF 152
           ++TGS ALD  LG GG+    + E +G   SGKT LA H +          GG      +
Sbjct: 108 ITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLA-HTLCVTTQLPTEMGGGNGKVAY 165

Query: 153 IDAEHALDPS----LAETIGVKTE----NLLLAQPDCGEQALSLVDTLIRSGSVD---VV 201
           ID E    P     +AE  G+  +    N++ A+    E   +L+  L    + +   ++
Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 202 VVDSVAAL-----VPKGEL 215
           +VDSV AL       +GEL
Sbjct: 226 IVDSVIALFRVDFTGRGEL 244

Length = 344

>gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 29/141 (20%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQG---GYCVFI 153
           ++TGS  LD  L  GG+  G + EIYG   +GKT L   +    Q    QG   G  ++I
Sbjct: 105 ITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163

Query: 154 DAEHALDP----SLAETIGVKT----ENLLLAQPDCGEQALSLVDTLIRSGS------VD 199
           D E    P     +AE  G+      EN+  A+    +    L   L+ + S        
Sbjct: 164 DTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQSEL---LLEAASMMAETRFA 220

Query: 200 VVVVDSVAAL-----VPKGEL 215
           +++VDS  AL       +GEL
Sbjct: 221 LMIVDSATALYRTEFSGRGEL 241

Length = 342

>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 91  SVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE-AQRQGGY 149
            +     P +STG   LD  LG GGL  G V+ I G    GK+TL L V A  A+R  G 
Sbjct: 66  DIELEEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GK 122

Query: 150 CVFIDAEHALDP-SL-AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSV 206
            +++  E +L    L A+ +G+ T NL L      E  ++ ++        D+VV+DS+
Sbjct: 123 VLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQE----KPDLVVIDSI 177

Length = 456

>gnl|CDD|185407 PTZ00035, PTZ00035, Rad51 protein; Provisional

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 34/181 (18%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA-------EAQRQGGYCVF 152
           ++TGS  LD  LG GG+  G + E++G   +GKT L  H +        E     G  ++
Sbjct: 100 ITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLC-HTLCVTCQLPIEQGGGEGKVLY 157

Query: 153 IDAEHALDP----SLAETIGVKTE----NLLLAQPDCGE---QALSLVDTLIRSGSVDVV 201
           ID E    P     +AE  G+  E    N+  A+    E   Q LS     +      ++
Sbjct: 158 IDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALL 217

Query: 202 VVDSVAALVPKGELD----GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI-NQVF 256
           +VDS  AL     +D    GE+ +    +  + +  AL+KL+   +    + + I NQV 
Sbjct: 218 IVDSATALF---RVDYSGRGELAERQQHL-GKFLR-ALQKLADEFN----VAVVITNQVM 268

Query: 257 S 257
           +
Sbjct: 269 A 269

Length = 337

>gnl|CDD|131290 TIGR02236, recomb_radA, DNA repair and recombination protein RadA

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 20/128 (15%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKT----TLALHVIAEAQRQG--GYCVFI 153
           ++TGS  LD  LG GG+    + E++G   SGKT     LA++V    ++ G  G  V+I
Sbjct: 77  ITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYI 135

Query: 154 DAEHALDP----SLAETIGVKTE----NLLLAQPDCGEQALSLVD---TLIRSG--SVDV 200
           D E+   P     +AE  G+  +    N+ +A+       + LV+    LI+     V +
Sbjct: 136 DTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKL 195

Query: 201 VVVDSVAA 208
           ++VDS+ +
Sbjct: 196 LIVDSLTS 203

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein [DNA metabolism, DNA replication, recombination, and repair]. Length = 310

>gnl|CDD|233794 TIGR02239, recomb_RAD51, DNA repair protein RAD51

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 18/127 (14%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQG---GYCVFI 153
           ++TGS  LD  LG GG+  G + EI+G   +GKT L   +    Q    QG   G  ++I
Sbjct: 78  LTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYI 136

Query: 154 DAEHALDP----SLAETIGVKTE----NLLLAQPDCGEQALSLVD---TLIRSGSVDVVV 202
           D E    P    ++AE  G+  E    N+  A+    +  L L+     ++      +++
Sbjct: 137 DTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLI 196

Query: 203 VDSVAAL 209
           VDS  AL
Sbjct: 197 VDSATAL 203

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). Length = 316

>gnl|CDD|222165 pfam13481, AAA_25, AAA domain

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 29/111 (26%)

Query: 114 GGLPKGRVVEIYGPEASGKTTLALHV---IAEAQRQGGY-------CVFIDAEHALDPSL 163
           G LP+G +  + G   +GK+TLAL +   +A  +   G         +++D E +    L
Sbjct: 28  GLLPRGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLGPFPVEPGRVLYLDGEDSEA-GL 86

Query: 164 AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGE 214
              +                   +L + L      D+VV+D +A+L+   E
Sbjct: 87  RRRL------------------RALGEALEEIEGPDLVVIDPLASLLGGDE 119

This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154

>gnl|CDD|213836 TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFID--- 154
           +STG   LD    T GL KG ++ I    + GKTTLAL+ IAE  A R+G   +F     
Sbjct: 176 LSTGLPKLDRL--TNGLVKGDLIVIGARPSMGKTTLALN-IAENVALREGKPVLFFSLEM 232

Query: 155 -AEHALDPSLAETIGVKTENL 174
            AE   +  LA   G+ T N+
Sbjct: 233 SAEQLGERLLASKSGINTGNI 253

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model [Mobile and extrachromosomal element functions, Prophage functions]. Length = 420

>gnl|CDD|222163 pfam13479, AAA_24, AAA domain

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 18/88 (20%)

Query: 124 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA--ETIGVKTENLLLAQPDC 181
           IYGP   GKT+LA  +  +        +F+D +      L+  + + +++        D 
Sbjct: 8   IYGPPGIGKTSLAKTLPPKT-------LFLDLDAGTTKVLSRGDNVDIRSW------QDL 54

Query: 182 GEQALSLVDTLIRSGSVDVVVVDSVAAL 209
               L  +   +     D +V+D++  L
Sbjct: 55  -RDFLDELAEDL--AEYDTLVIDTITKL 79

This AAA domain is found in a wide variety of presumed phage proteins. Length = 201

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 26/129 (20%)

Query: 124 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183
           +YGP  +GKTTLA  +  E  R G   ++++A                   L+     G 
Sbjct: 24  LYGPPGTGKTTLARAIANELFRPGAPFLYLNAS-------------DLLEGLVVAELFGH 70

Query: 184 QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243
             + L+  L       V+ +D             E+       Q  L+          + 
Sbjct: 71  FLVRLLFELAEKAKPGVLFID-------------EIDSLSRGAQNALLRVLETLNDLRID 117

Query: 244 LSQTILIFI 252
                +I  
Sbjct: 118 RENVRVIGA 126

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|232966 TIGR00416, sms, DNA repair protein RadA

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156
           VP  S+G   LD  LG GG+  G ++ I G    GK+TL L V  +  +     +++  E
Sbjct: 73  VPRFSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131

Query: 157 HALDPSL--AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 209
            +L      A  +G+   NL +      EQ  + ++           V+DS+  L
Sbjct: 132 ESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQ----ACVIDSIQTL 182

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)) [DNA metabolism, DNA replication, recombination, and repair]. Length = 454

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
COG0305	435	DnaB Replicative DNA helicase [DNA replication, re	100.0
PRK08006	471	replicative DNA helicase; Provisional	100.0
PRK08760	476	replicative DNA helicase; Provisional	100.0
PRK08840	464	replicative DNA helicase; Provisional	100.0
PRK05636	505	replicative DNA helicase; Provisional	100.0
PRK06904	472	replicative DNA helicase; Validated	100.0
PRK07004	460	replicative DNA helicase; Provisional	100.0
PRK06321	472	replicative DNA helicase; Provisional	100.0
PRK09165	497	replicative DNA helicase; Provisional	100.0
PRK05595	444	replicative DNA helicase; Provisional	100.0
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	100.0
PRK08506	472	replicative DNA helicase; Provisional	100.0
PRK05748	448	replicative DNA helicase; Provisional	100.0
PRK07773	886	replicative DNA helicase; Validated	100.0
PRK06749	428	replicative DNA helicase; Provisional	99.97
PHA02542	473	41 41 helicase; Provisional	99.97
TIGR00665	434	DnaB replicative DNA helicase. This model describe	99.97
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	99.97
cd00983	325	recA RecA is a bacterial enzyme which has roles in	99.97
PRK09354	349	recA recombinase A; Provisional	99.97
PF00154	322	RecA: recA bacterial DNA recombination protein; In	99.96
PRK09519	790	recA DNA recombination protein RecA; Reviewed	99.94
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	99.93
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	99.93
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	99.92
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	99.92
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	99.92
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	99.91
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	99.91
PTZ00035	337	Rad51 protein; Provisional	99.91
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	99.9
cd01394	218	radB RadB. The archaeal protein radB shares simila	99.89
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	99.88
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	99.88
TIGR02236	310	recomb_radA DNA repair and recombination protein R	99.88
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	99.87
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	99.87
PRK04301	317	radA DNA repair and recombination protein RadA; Va	99.87
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	99.87
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	99.86
PRK11823	446	DNA repair protein RadA; Provisional	99.86
PRK05973	237	replicative DNA helicase; Provisional	99.85
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	99.85
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	99.84
TIGR02237	209	recomb_radB DNA repair and recombination protein R	99.83
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	99.83
PRK04328	249	hypothetical protein; Provisional	99.83
KOG1434	335	consensus Meiotic recombination protein Dmc1 [Cell	99.82
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	99.81
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	99.79
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	99.76
PRK06067	234	flagellar accessory protein FlaH; Validated	99.76
PRK09302	509	circadian clock protein KaiC; Reviewed	99.75
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	99.74
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	99.72
PRK09302	509	circadian clock protein KaiC; Reviewed	99.72
KOG1564	351	consensus DNA repair protein RHP57 [Replication, r	99.71
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.69
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	99.66
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.65
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.65
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.63
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.63
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	99.62
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.6
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.59
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.57
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.57
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.54
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.53
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.51
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.5
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.49
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.49
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.49
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.46
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	99.45
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.45
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.44
KOG1433	326	consensus DNA repair protein RAD51/RHP55 [Replicat	99.44
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.43
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.43
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.42
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.41
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.41
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.41
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.4
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.4
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.4
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.39
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.38
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.37
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.37
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.36
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.35
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.35
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.34
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.34
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.34
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.34
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.34
COG4181	228	Predicted ABC-type transport system involved in ly	99.34
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.33
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.33
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.33
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.33
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.32
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.32
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.32
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.32
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.32
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.32
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.31
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.31
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.31
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.31
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.31
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.31
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.3
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.3
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.3
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.3
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.29
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.29
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.29
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.29
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.29
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.28
COG1123	539	ATPase components of various ABC-type transport sy	99.28
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.28
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.28
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.27
cd03246	173	ABCC_Protease_Secretion This family represents the	99.27
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.27
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.27
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.27
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.27
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.27
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.27
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.26
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.26
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.26
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.26
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.26
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.26
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.26
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.25
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.25
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.25
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.25
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.24
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.24
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.24
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.24
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.24
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.24
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.24
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.24
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.24
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	99.24
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.24
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.24
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.24
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.24
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.24
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.23
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.23
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.23
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.23
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.23
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.23
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.23
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.23
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.23
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.23
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.23
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.22
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.22
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.22
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.22
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.22
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.22
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.22
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.21
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.21
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.21
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.21
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.21
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.21
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.2
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.2
PRK10908	222	cell division protein FtsE; Provisional	99.2
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.2
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.2
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.2
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.2
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.19
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.19
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.19
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.19
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.19
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.18
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.18
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.18
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.18
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.18
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.18
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.17
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.17
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.17
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.17
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.17
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.17
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.17
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.16
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.16
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.16
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.16
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.15
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.15
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.15
COG4559	259	ABC-type hemin transport system, ATPase component	99.15
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.15
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.15
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.15
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.15
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.14
COG1123	539	ATPase components of various ABC-type transport sy	99.14
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.14
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.14
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.14
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.14
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.14
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.14
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.14
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.14
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.13
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.13
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.13
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.13
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.13
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.12
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.12
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.12
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.12
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.11
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.11
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.11
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.11
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.1
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.1
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.1
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.1
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.09
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.09
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.09
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.09
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.08
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.08
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.08
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.08
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.08
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.07
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	99.07
PRK13409	590	putative ATPase RIL; Provisional	99.07
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.07
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.06
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.06
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.06
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.06
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.06
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.06
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.05
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.05
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.05
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.05
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.05
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.05
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.05
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.04
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.04
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.04
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.04
PRK10938	490	putative molybdenum transport ATP-binding protein	99.04
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.04
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.04
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.03
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.03
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.03
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.03
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.03
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.03
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.03
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.02
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.02
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.02
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.02
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.02
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.02
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.02
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.02
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.02
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.01
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.01
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.01
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.99
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.99
COG4988	559	CydD ABC-type transport system involved in cytochr	98.99
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.99
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.99
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.99
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.99
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.99
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.98
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	98.98
PLN03211	659	ABC transporter G-25; Provisional	98.98
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.98
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.98
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.98
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.98
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.97
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.97
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.97
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.96
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.96
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.96
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.96
PRK04296	190	thymidine kinase; Provisional	98.96
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.96
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.96
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.96
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.95
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.95
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.95
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.95
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.95
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.95
KOG2373	514	consensus Predicted mitochondrial DNA helicase twi	98.94
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.94
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.94
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.94
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.94
PRK10938	490	putative molybdenum transport ATP-binding protein	98.94
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.94
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.93
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.93
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.93
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.93
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.93
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.93
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.93
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.92
COG4172	534	ABC-type uncharacterized transport system, duplica	98.92
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.91
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.91
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.91
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.91
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.91
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.9
PLN03140	1470	ABC transporter G family member; Provisional	98.9
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.9
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.89
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.89
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.89
PRK11147	635	ABC transporter ATPase component; Reviewed	98.89
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.89
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.89
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.89
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.88
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.88
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.87
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.87
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.87
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.86
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.86
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.86
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.86
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.86
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.85
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.85
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.85
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.84
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.83
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.83
PLN03140	1470	ABC transporter G family member; Provisional	98.83
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.83
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.82
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.82
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.82
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.82
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.81
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.81
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.8
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.8
smart00382	148	AAA ATPases associated with a variety of cellular	98.78
PRK13409	590	putative ATPase RIL; Provisional	98.77
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.76
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.76
PLN03232	1495	ABC transporter C family member; Provisional	98.76
COG4987	573	CydC ABC-type transport system involved in cytochr	98.76
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.76
PLN03130	1622	ABC transporter C family member; Provisional	98.75
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.75
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.74
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.73
PTZ00243	1560	ABC transporter; Provisional	98.73
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	98.71
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.71
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	98.7
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.7
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.68
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.68
PLN03073	718	ABC transporter F family; Provisional	98.66
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.66
COG0488	530	Uup ATPase components of ABC transporters with dup	98.63
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.62
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.6
COG4172	534	ABC-type uncharacterized transport system, duplica	98.58
PRK11147	635	ABC transporter ATPase component; Reviewed	98.54
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.53
PF13479	213	AAA_24: AAA domain	98.52
PLN03073	718	ABC transporter F family; Provisional	98.49
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	98.47
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.46
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.46
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.46
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.46
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.45
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.42
PLN03130	1622	ABC transporter C family member; Provisional	98.42
COG0488	530	Uup ATPase components of ABC transporters with dup	98.42
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	98.4
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.38
PRK10416	318	signal recognition particle-docking protein FtsY;	98.37
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.36
PLN03232	1495	ABC transporter C family member; Provisional	98.35
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.35
COG4178	604	ABC-type uncharacterized transport system, permeas	98.35
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.32
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.31
PTZ00243	1560	ABC transporter; Provisional	98.31
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.3
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.29
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.28
PF00004	132	AAA: ATPase family associated with various cellula	98.28
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.27
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.26
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.23
PF13173	128	AAA_14: AAA domain	98.22
cd01128	249	rho_factor Transcription termination factor rho is	98.21
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.2
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.2
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.18
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.17
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.16
PRK14974	336	cell division protein FtsY; Provisional	98.16
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.15
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.14
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.14
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.14
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.14
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.14
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.13
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.12
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.11
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.11
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.11
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.11
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.1
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.1
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.1
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.09
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.07
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.07
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.06
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.05
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.04
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.04
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.04
PRK00889	175	adenylylsulfate kinase; Provisional	98.04
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.04
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.04
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.03
PRK03846	198	adenylylsulfate kinase; Provisional	98.03
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.02
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.02
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.02
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.02
PRK08181	269	transposase; Validated	98.01
PRK08084	235	DNA replication initiation factor; Provisional	98.01

>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]

Probab=100.00  E-value=1.4e-38  Score=291.03  Aligned_cols=239  Identities=18%  Similarity=0.193  Sum_probs=204.4

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG   81 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (271)
                      |+||+++|++|+|+..      +.++...+|.......+++++.+|+++|++++.....++.++.+++.++++.|++.+.
T Consensus        99 ~~iv~e~s~~R~Li~~------~~~i~~~~~~~~~~~~~~~l~~ae~~i~~i~~~~~~~~~~~~~~~l~~~~~~i~~~~~  172 (435)
T COG0305          99 AKIVKEKALLRELIEA------GNEIVNLGYESEKDLDEEVLDAAEKKIFDVAERKNSEDFVHIGDLLKETMDEIEARFE  172 (435)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHhhhccccccHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhc
Confidence            7899999999999999      9999999987766444599999999999999998888999999999999999999988


Q ss_pred             CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEcCCCCCC
Q 024152           82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALD  160 (271)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~~e~~~~  160 (271)
                      +.            .++|+||||.+||.+|+  ||++|++++++|+||+|||+||+++|.+++... .+|.+|+.|++..
T Consensus       173 ~~------------~~~Gi~tgf~~LD~~t~--G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~e  238 (435)
T COG0305         173 NG------------GLIGVPTGFTDLDEITS--GFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEE  238 (435)
T ss_pred             cC------------CCcccccCchhhHHHhc--CCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHH
Confidence            53            27999999999999998  999999999999999999999999999999754 4799999999876


Q ss_pred             HH----HHHHcCCcCCcceec---------------------------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152          161 PS----LAETIGVKTENLLLA---------------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       161 ~~----~~~~~g~~~~~~~~~---------------------------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~  209 (271)
                      +.    ++...++...+++.+                           +..+..++++.+|+++.++++++++|||++.+
T Consensus       239 ql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm  318 (435)
T COG0305         239 QLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLM  318 (435)
T ss_pred             HHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEee
Confidence            53    333334443333222                           22456689999999999999999999999999


Q ss_pred             cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc--------cccchhhhhhhccC
Q 024152          210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF--------SINLNKIIDESSGH  270 (271)
Q Consensus       210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~--------~~~~~~~l~~s~~~  270 (271)
                      ..         .....+++++++++++.||.+|+|+++||+++||++        ++|+++++||| |.
T Consensus       319 ~~---------~~~~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRES-Gs  377 (435)
T COG0305         319 TG---------GKKSENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRES-GA  377 (435)
T ss_pred             cc---------cccchhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccC-Cc
Confidence            73         222368899999999999999999999999999999        47899999998 53

>PRK08006 replicative DNA helicase; Provisional

Probab=100.00  E-value=4.8e-35  Score=274.59  Aligned_cols=241  Identities=15%  Similarity=0.157  Sum_probs=191.4

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCcccc--CcchHHHHHHHHHHHHHHh
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEE--NMSKKDLALQQALDQITSS   79 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~   79 (271)
                      |+||++++++|+++..      +.++...+++.+..+++++++.++..++++.+.....  ++..+.+++.++++.+++.
T Consensus       123 a~iV~e~~~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~  196 (471)
T PRK08006        123 ADIVRERAVVREMISV------ANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRANKDEGPKNIADILDATVARIEQL  196 (471)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccCCCCCCceeHHHHHHHHHHHHHHH
Confidence            7899999999999998      8888888877653478999999999999997664432  5778889999999999876


Q ss_pred             cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCC
Q 024152           80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA  158 (271)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~  158 (271)
                      +..+.          ..++|+||||++||.+++  ||++|++++|+|+||||||+|++++|.+++. .+.+|+||+.|++
T Consensus       197 ~~~~~----------~~~~Gi~TG~~~LD~~~~--Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~  264 (471)
T PRK08006        197 FQQPH----------DGVTGVNTGYDDLNKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP  264 (471)
T ss_pred             HhcCC----------CCCCcccCCCHHHHHhhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            53311          257899999999999997  9999999999999999999999999999885 4568999999988


Q ss_pred             CCH----HHHHHcCCcCC--------------------------cceec--CCCCHHHHHHHHHHHHhcC-CccEEEEcc
Q 024152          159 LDP----SLAETIGVKTE--------------------------NLLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDS  205 (271)
Q Consensus       159 ~~~----~~~~~~g~~~~--------------------------~~~~~--~~~~~~e~~~~~~~l~~~~-~~~lvvID~  205 (271)
                      ..+    .++...++...                          ++++.  ...+..++++.+++++.++ ++++|+|||
T Consensus       265 ~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDY  344 (471)
T PRK08006        265 GEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDY  344 (471)
T ss_pred             HHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence            654    22222222211                          12222  2357889999999887765 699999999


Q ss_pred             hhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152          206 VAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH  270 (271)
Q Consensus       206 l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~  270 (271)
                      |+.+.....         ..++..+++.+++.||.+|+|++||||+++|++.        +|.++++++| |.
T Consensus       345 Lqli~~~~~---------~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreS-G~  407 (471)
T PRK08006        345 LQLMRVPSL---------SDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRES-GS  407 (471)
T ss_pred             HHHccCCCC---------CCCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhc-Cc
Confidence            999853110         0145568999999999999999999999999994        4788999997 54

>PRK08760 replicative DNA helicase; Provisional

Probab=100.00  E-value=5e-35  Score=275.18  Aligned_cols=240  Identities=17%  Similarity=0.218  Sum_probs=193.1

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCc--cccCcchHHHHHHHHHHHHHHh
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDS--GEENMSKKDLALQQALDQITSS   79 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~   79 (271)
                      |+||+|++++|+++.+      +.++...++..+..+++++++.+++.++++.+..  ...++..+.+++.++++.+++.
T Consensus       129 a~iV~e~~~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (476)
T PRK08760        129 AEIVRDKAVLRQLIEV------GTTIVNDGFQPEGRESIELLASAEKAVFKIAEAGARGRTDFVAMPGALKDAFEELRNR  202 (476)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhccccccCCceeHHHHHHHHHHHHHHH
Confidence            7899999999999998      8888888876653478999999999999998653  2346778889999999999887


Q ss_pred             cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCC
Q 024152           80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA  158 (271)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~  158 (271)
                      +.++.           ...|+||||.+||.+++  ||++|++++|+|+||+|||+|+++++.+++.. +.+|+||+.|++
T Consensus       203 ~~~~~-----------~~~Gi~TG~~~LD~~t~--G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs  269 (476)
T PRK08760        203 FENGG-----------NITGLPTGYNDFDAMTA--GLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS  269 (476)
T ss_pred             HhCCC-----------CCCcccCCcHHHHHHhc--CCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence            66443           67899999999999998  89999999999999999999999999998854 568999999998


Q ss_pred             CCHH----HHHHcCCcCCc-------------------------ceec--CCCCHHHHHHHHHHHHhcCCccEEEEcchh
Q 024152          159 LDPS----LAETIGVKTEN-------------------------LLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVA  207 (271)
Q Consensus       159 ~~~~----~~~~~g~~~~~-------------------------~~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~  207 (271)
                      ..+.    ++...+++.++                         +.+.  ...+.+++++.+++++.++++++||||||+
T Consensus       270 ~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLq  349 (476)
T PRK08760        270 ASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQ  349 (476)
T ss_pred             HHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence            6542    22222222211                         1222  235688999999999888889999999999


Q ss_pred             hhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152          208 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH  270 (271)
Q Consensus       208 ~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~  270 (271)
                      .+...       +.  ..++..+++++++.||.+|++++||||+++|++.        .|.+++|++| |.
T Consensus       350 l~~~~-------~~--~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS-g~  410 (476)
T PRK08760        350 LMSVP-------GN--SENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRES-GA  410 (476)
T ss_pred             hcCCC-------CC--CcccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhc-cc
Confidence            88521       11  1245578899999999999999999999999983        5788999987 53

>PRK08840 replicative DNA helicase; Provisional

Probab=100.00  E-value=9.9e-35  Score=272.03  Aligned_cols=241  Identities=16%  Similarity=0.159  Sum_probs=191.6

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccc--cCcchHHHHHHHHHHHHHHh
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGE--ENMSKKDLALQQALDQITSS   79 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~   79 (271)
                      |+||+++|++|+++..      +.++...+++++..+++++++.+|..++++.+....  .++..+.+++.++++.+++.
T Consensus       116 a~iVke~s~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~  189 (464)
T PRK08840        116 ADIVAERALVRNLIGV------ANEIADAGYDPQGRTSEDLLDMAESKVFAIAEARTSENEGPQNVDSILEKTLERIELL  189 (464)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccCcCCCCceeHHHHHHHHHHHHHHH
Confidence            7899999999999998      888888887665347999999999999999876433  46777888999999999876


Q ss_pred             cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCC
Q 024152           80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA  158 (271)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~  158 (271)
                      +..+.          ..++|+||||++||.+++  ||++|++++|+|+||+|||+|+++++.+++.. +.+|+||+.|++
T Consensus       190 ~~~~~----------~~~~gi~TG~~~LD~~~~--G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs  257 (464)
T PRK08840        190 YKTPQ----------DGVTGVDTGFTDLNKKTA--GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP  257 (464)
T ss_pred             HhcCC----------CCCCCcCCCcHHHHHhhc--CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence            53211          157899999999999998  99999999999999999999999999999854 568999999988


Q ss_pred             CCHH----HHHHcCCcCC--------------------------cceec--CCCCHHHHHHHHHHHHhcC-CccEEEEcc
Q 024152          159 LDPS----LAETIGVKTE--------------------------NLLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDS  205 (271)
Q Consensus       159 ~~~~----~~~~~g~~~~--------------------------~~~~~--~~~~~~e~~~~~~~l~~~~-~~~lvvID~  205 (271)
                      ..+.    ++...++...                          .+++.  ...+..++++.+++++.++ ++++|+|||
T Consensus       258 ~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDY  337 (464)
T PRK08840        258 AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDY  337 (464)
T ss_pred             HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence            6542    2332233221                          12222  2356789999999987665 589999999


Q ss_pred             hhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152          206 VAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH  270 (271)
Q Consensus       206 l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~  270 (271)
                      |+.+...       +.  ..++.+++..+++.||.+|+|++||||+++|++.        +|.+++|++| |+
T Consensus       338 Lql~~~~-------~~--~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreS-G~  400 (464)
T PRK08840        338 LQLMRVP-------AL--SDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRES-GS  400 (464)
T ss_pred             HHhcCCC-------CC--CCchHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhc-cc
Confidence            9998521       11  1245678999999999999999999999999974        4788999997 54

>PRK05636 replicative DNA helicase; Provisional

Probab=100.00  E-value=1.5e-34  Score=272.99  Aligned_cols=238  Identities=18%  Similarity=0.181  Sum_probs=192.5

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCccccccccccc-ccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhc
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETS-TQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSF   80 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (271)
                      |+||+|++++|+++.+      +.++...++.... .+++++++.+|+.++.++......++..+.+++.++++.|++..
T Consensus       166 a~iVke~a~~R~li~~------~~~i~~~~~~~~~~~~~~~~i~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~  239 (505)
T PRK05636        166 AEIVSEKAVLRRLVDA------GTRVVQLGYEGDEGAEIDSVIDRAQQEVFAVSQKNQSEDYAVLADILDPTMDELEMLS  239 (505)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHH
Confidence            7899999999999998      8888888876542 37899999999999999877666678888999999999998765


Q ss_pred             CCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCCC
Q 024152           81 GKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL  159 (271)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~~  159 (271)
                      ..+.           ...|+||||.+||.+++  ||++|++++|+|+||+|||+|+++++.+++. .+.+|+||+.|++.
T Consensus       240 ~~~~-----------~~~Gi~TG~~~LD~~t~--Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~  306 (505)
T PRK05636        240 SQGG-----------IATGIPTGFKDLDDLTN--GLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK  306 (505)
T ss_pred             hCCC-----------CCCceecChHHHhhhcC--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence            4332           56899999999999997  9999999999999999999999999999875 45689999999986


Q ss_pred             CHH----HHHHcCCcCC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCccEEEEcchhh
Q 024152          160 DPS----LAETIGVKTE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAA  208 (271)
Q Consensus       160 ~~~----~~~~~g~~~~-------------------------~~~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~  208 (271)
                      .+.    ++...++...                         .+++.  ...+..++++.+++++.++++++|+||||+.
T Consensus       307 ~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql  386 (505)
T PRK05636        307 SEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQL  386 (505)
T ss_pred             HHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHh
Confidence            542    2222222221                         12222  2356789999999998888899999999999


Q ss_pred             hcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc--------cccchhhhhhh
Q 024152          209 LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF--------SINLNKIIDES  267 (271)
Q Consensus       209 ~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~--------~~~~~~~l~~s  267 (271)
                      +.+.        . ...++.+++.++++.||.+|+|++||||+++|++        .+|.+++|++|
T Consensus       387 ~~~~--------~-~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreS  444 (505)
T PRK05636        387 MSSG--------K-RVESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRES  444 (505)
T ss_pred             cCCC--------C-CCCcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhc
Confidence            8531        1 0124557899999999999999999999999998        35788899987

>PRK06904 replicative DNA helicase; Validated

Probab=100.00  E-value=2.1e-34  Score=270.54  Aligned_cols=242  Identities=17%  Similarity=0.179  Sum_probs=189.7

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccc--cCcchHHHHHHHHHHHHHHh
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGE--ENMSKKDLALQQALDQITSS   79 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~   79 (271)
                      |+||++++++|+++..      +.++...++..+..+++++++.++..++++.+....  .++..+.+++.++++.+++.
T Consensus       119 a~iVke~~~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~  192 (472)
T PRK06904        119 ADIVREKAILRELISV------GNNIAKNAYSPKGQDIKDILDEAERDVFSIAEKRTTANEGPQNVINLLENTIDKIENL  192 (472)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhcCccCCHHHHHHHHHHHHHHHHhhcccccCCceeHHHHHHHHHHHHHHH
Confidence            7899999999999998      888888887765347999999999999999765443  46778888999999988864


Q ss_pred             cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCC
Q 024152           80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA  158 (271)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~  158 (271)
                      ....         ......|+||||++||.+++  ||++|++++|+|+||||||+|+++++.+++.. +.+|+||+.|++
T Consensus       193 ~~~~---------~~~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs  261 (472)
T PRK06904        193 AATP---------TNNGVTGVTTGFTDLDKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP  261 (472)
T ss_pred             Hhhc---------cCCCCCCccCChHHHHHHHh--ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            3110         11267899999999999998  99999999999999999999999999999864 668999999988


Q ss_pred             CCHH----HHHHcCCcCCc---------------------------ceecC--CCCHHHHHHHHHHHHhcC-CccEEEEc
Q 024152          159 LDPS----LAETIGVKTEN---------------------------LLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVD  204 (271)
Q Consensus       159 ~~~~----~~~~~g~~~~~---------------------------~~~~~--~~~~~e~~~~~~~l~~~~-~~~lvvID  204 (271)
                      ..+.    ++...+++..+                           +++.+  ..+..++++.+++++.+. ++++|+||
T Consensus       262 ~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID  341 (472)
T PRK06904        262 AEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVD  341 (472)
T ss_pred             HHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            6542    22222222111                           22222  256788999998887654 69999999


Q ss_pred             chhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152          205 SVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH  270 (271)
Q Consensus       205 ~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~  270 (271)
                      ||+.+... ..        ..++..+++++++.||.+|+|++||||+++|++.        +|.+++|++| |.
T Consensus       342 YLqli~~~-~~--------~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS-G~  405 (472)
T PRK06904        342 YLQLMRAP-GF--------EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRES-GS  405 (472)
T ss_pred             cHHhcCCC-CC--------CCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhc-Cc
Confidence            99998631 11        1145568899999999999999999999999973        5788999997 54

>PRK07004 replicative DNA helicase; Provisional

Probab=100.00  E-value=1.4e-34  Score=271.32  Aligned_cols=242  Identities=16%  Similarity=0.184  Sum_probs=191.7

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCcc--ccCcchHHHHHHHHHHHHHHh
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSG--EENMSKKDLALQQALDQITSS   79 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~   79 (271)
                      |+||+++|++|++++.      +.++...++..+..+++++++.+++.++++.+...  ..++..+.+++.++++.+++.
T Consensus       111 a~iV~e~~~~R~li~~------~~~i~~~~~~~~~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~  184 (460)
T PRK07004        111 AEIVRDRAVLRRLVSV------ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGTQGFLEIGPLLTQVVERIDTL  184 (460)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhccCcCCHHHHHHHHHHHHHHHHcccCcCcCcchhHHHHHHHHHHHHHHH
Confidence            7899999999999998      88888888766534789999999999999986542  246778889999999999876


Q ss_pred             cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCC
Q 024152           80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA  158 (271)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~  158 (271)
                      +....         .....|+|||+.+||.+++  ||++|++++|+|+||||||+|+++++.+++. .+.+|+||+.|++
T Consensus       185 ~~~~~---------~~~~~gi~TG~~~LD~~t~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~  253 (460)
T PRK07004        185 YHTAN---------PSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP  253 (460)
T ss_pred             Hhccc---------cCCCCCccCCcHHhccccc--CCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            54311         1257899999999999998  9999999999999999999999999998875 5668999999998


Q ss_pred             CCHH----HHHHcCCcCCc-------------------------ceec--CCCCHHHHHHHHHHHHhcC-CccEEEEcch
Q 024152          159 LDPS----LAETIGVKTEN-------------------------LLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDSV  206 (271)
Q Consensus       159 ~~~~----~~~~~g~~~~~-------------------------~~~~--~~~~~~e~~~~~~~l~~~~-~~~lvvID~l  206 (271)
                      ..+.    ++...+++.++                         +.+.  +..+..++++.+++++.+. ++++|+||||
T Consensus       254 ~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYL  333 (460)
T PRK07004        254 GTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYL  333 (460)
T ss_pred             HHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChh
Confidence            7642    22222333221                         1221  2346778999999987664 5899999999


Q ss_pred             hhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc--------cccchhhhhhhccC
Q 024152          207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF--------SINLNKIIDESSGH  270 (271)
Q Consensus       207 ~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~--------~~~~~~~l~~s~~~  270 (271)
                      +.+.+..         ...++.++++.+++.||.+|+|++||||++||++        .+|.+++|++| |+
T Consensus       334 ql~~~~~---------~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS-g~  395 (460)
T PRK07004        334 QLMSGSS---------QGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRES-GA  395 (460)
T ss_pred             hhccCCC---------CCCcHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcc-hh
Confidence            9996311         0124667899999999999999999999999997        35788999997 53

>PRK06321 replicative DNA helicase; Provisional

Probab=100.00  E-value=3.7e-34  Score=268.46  Aligned_cols=247  Identities=14%  Similarity=0.127  Sum_probs=187.7

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHH----------
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQ----------   71 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   71 (271)
                      |+||+|++++|++++.      +.++...+++.+ .+++++++.++..++++++.....++..+.+++.+          
T Consensus       112 a~iV~e~~~~R~li~~------~~~~~~~~~~~~-~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (472)
T PRK06321        112 AEIIRSKSILRKMIQT------AKEIEKKALEEP-KDVATALDEAQNLLFKISQTTNLAQYVLVADKLKGLTSSKDKPFL  184 (472)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHhccCCCCceEHHHHHhhhhcchhhhHH
Confidence            7899999999999998      888888887665 48999999999999999877666667667666443          


Q ss_pred             --HHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCC
Q 024152           72 --ALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGG  148 (271)
Q Consensus        72 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g  148 (271)
                        +.+.++........      .......|+||||.+||.+++  ||++|++++|+|+||||||+|+++++.+++. .+.
T Consensus       185 ~~~~~~~~~~~~~~~~------~~~~~~~Gi~tG~~~LD~~t~--Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~  256 (472)
T PRK06321        185 LQLQERQEAFQQSAQG------DSSPMISGIPTHFIDLDKMIN--GFSPSNLMILAARPAMGKTALALNIAENFCFQNRL  256 (472)
T ss_pred             HHHHHHHHHHhhhhcc------ccCCCCCccccCcHHHHHHhc--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCC
Confidence              23333321110000      012257899999999999998  9999999999999999999999999999885 466


Q ss_pred             eEEEEcCCCCCCH----HHHHHcCCcCCcc-------------------------eec--CCCCHHHHHHHHHHHHhcCC
Q 024152          149 YCVFIDAEHALDP----SLAETIGVKTENL-------------------------LLA--QPDCGEQALSLVDTLIRSGS  197 (271)
Q Consensus       149 ~v~~~~~e~~~~~----~~~~~~g~~~~~~-------------------------~~~--~~~~~~e~~~~~~~l~~~~~  197 (271)
                      +|+||+.|++..+    .++...+++.+++                         .+.  ...+..++++.+++++.+++
T Consensus       257 ~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~  336 (472)
T PRK06321        257 PVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYD  336 (472)
T ss_pred             eEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence            8999999998654    2233333333221                         111  23467899999999888888


Q ss_pred             ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc--------cccchhhhhhhcc
Q 024152          198 VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF--------SINLNKIIDESSG  269 (271)
Q Consensus       198 ~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~--------~~~~~~~l~~s~~  269 (271)
                      +++|+||||+.+......      ....++.+++..+++.||.+|+|++||||+++|+.        .+|.++++++| |
T Consensus       337 ~~lvvIDyLql~~~~~~~------~~~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReS-G  409 (472)
T PRK06321        337 IQFLIIDYLQLLSGSGNL------RNSESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRES-G  409 (472)
T ss_pred             CCEEEEcchHHcCCCCcc------CCcchHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhc-c
Confidence            999999999998531110      01125667899999999999999999999999996        36888999997 5


Q ss_pred             C
Q 024152          270 H  270 (271)
Q Consensus       270 ~  270 (271)
                      .
T Consensus       410 ~  410 (472)
T PRK06321        410 S  410 (472)
T ss_pred             c
Confidence            4

>PRK09165 replicative DNA helicase; Provisional

Probab=100.00  E-value=4.4e-34  Score=270.32  Aligned_cols=240  Identities=18%  Similarity=0.198  Sum_probs=192.6

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCccccccccccc-ccccccccccccccCCCCCCc-cccCcchHHHHHHHHHHHHHHh
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETS-TQICNFSSKSKRKSKSDGSDS-GEENMSKKDLALQQALDQITSS   79 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~   79 (271)
                      |+||++++++|+++..      +.++...++..+. .++.++++.+++.++++.+.. ...++..+.+++.++++.+++.
T Consensus       117 a~iV~e~~~~R~li~~------~~~i~~~a~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
T PRK09165        117 GRIIYDLALRRELINI------GEDVVNNAYDAPVDVAPQEQIEDAEQKLYELAETGRYEGGFQSFGTAITEAVDMANAA  190 (497)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHH
Confidence            7899999999999998      8888888876542 368999999999999998754 3457888889999999998876


Q ss_pred             cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-------------
Q 024152           80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-------------  146 (271)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-------------  146 (271)
                      +.+..           ...|+||||++||.+++  ||++|++++|+|+||+|||||+++++.+++..             
T Consensus       191 ~~~~~-----------~~~gi~TG~~~LD~~~g--G~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~  257 (497)
T PRK09165        191 FKRDG-----------HLSGISTGLRDLDSKLG--GLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKA  257 (497)
T ss_pred             HhCCC-----------CCCcccCChHHHhhhcC--CCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccc
Confidence            55332           67899999999999997  99999999999999999999999999998753             


Q ss_pred             --CCeEEEEcCCCCCCHH----HHHHcCCcCCcc-------------------------eec--CCCCHHHHHHHHHHHH
Q 024152          147 --GGYCVFIDAEHALDPS----LAETIGVKTENL-------------------------LLA--QPDCGEQALSLVDTLI  193 (271)
Q Consensus       147 --~g~v~~~~~e~~~~~~----~~~~~g~~~~~~-------------------------~~~--~~~~~~e~~~~~~~l~  193 (271)
                        +.+|+||+.|++..+.    ++...+++.+++                         .+.  ...+..++.+.+++++
T Consensus       258 ~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~  337 (497)
T PRK09165        258 VNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK  337 (497)
T ss_pred             cCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH
Confidence              4689999999987652    334445543321                         111  2356889999999988


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhh
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIID  265 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~  265 (271)
                      .++++++|+||||+.+.....       ....++.+++..+++.||.+|++++||||+++|++.        +|.+++|+
T Consensus       338 ~~~~~~lvvIDyLqli~~~~~-------~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr  410 (497)
T PRK09165        338 RQHGLDLLVVDYLQLIRGSSK-------RSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLR  410 (497)
T ss_pred             HhcCCCEEEEcchHhccCCCC-------CCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhh
Confidence            888899999999998863111       001245567999999999999999999999999983        57888999


Q ss_pred             hh
Q 024152          266 ES  267 (271)
Q Consensus       266 ~s  267 (271)
                      +|
T Consensus       411 ~S  412 (497)
T PRK09165        411 ES  412 (497)
T ss_pred             hc
Confidence            87

>PRK05595 replicative DNA helicase; Provisional

Probab=100.00  E-value=1e-33  Score=265.33  Aligned_cols=239  Identities=18%  Similarity=0.212  Sum_probs=193.3

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG   81 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (271)
                      |++|++++++|+++..      +.++...++.... +++++++.+|.+++++++.....++..+.+++.+.++.+++.+.
T Consensus       104 a~iVke~~~~R~l~~~------~~~~~~~~~~~~~-~~~~~l~~~e~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~  176 (444)
T PRK05595        104 IKIVKDKSTLRRLIKS------STEIIENSYNNQD-DVEKVIDSAEKKIFDISEKRTTSDFEPLSNVLERGFEQIENLFN  176 (444)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhccCCccceeHHHHHHHHHHHHHHHHh
Confidence            6899999999999997      7777777665544 78999999999999998776666788889999999999988766


Q ss_pred             CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcCCCCCC
Q 024152           82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALD  160 (271)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~e~~~~  160 (271)
                      ++.           ...|+|||++.||.+++  ||++|++++|+|+||+|||+|+++++.+++ ..+.+|+||+.|++..
T Consensus       177 ~~~-----------~~~gi~tg~~~ld~~~~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~  243 (444)
T PRK05595        177 NKG-----------ETTGVASGFRELDAKTS--GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKE  243 (444)
T ss_pred             CCC-----------CCCcccCChHHHHHhcC--CCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHH
Confidence            433           67899999999999997  999999999999999999999999999876 4566899999998865


Q ss_pred             H----HHHHHcCCcCCcc-------------------------eec--CCCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152          161 P----SLAETIGVKTENL-------------------------LLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       161 ~----~~~~~~g~~~~~~-------------------------~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~  209 (271)
                      +    .++...+++..++                         .+.  ...+..++++.+++++.++++++|+||||+.+
T Consensus       244 ~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~  323 (444)
T PRK05595        244 QLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLM  323 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhc
Confidence            4    2333344443221                         121  23467889999999887788999999999998


Q ss_pred             cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152          210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH  270 (271)
Q Consensus       210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~  270 (271)
                      ....         ...++..++..+++.||.+|+|++|||++++|++.        +|.++++++| |+
T Consensus       324 ~~~~---------~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~S-g~  382 (444)
T PRK05595        324 SGGK---------GSESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRES-GS  382 (444)
T ss_pred             cCCC---------CCccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhh-cc
Confidence            6311         11245578899999999999999999999999983        4788899997 54

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=100.00  E-value=1.5e-33  Score=262.82  Aligned_cols=239  Identities=21%  Similarity=0.252  Sum_probs=192.2

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCC--CCccccCcchHHHHHHHHHHHHHHh
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDG--SDSGEENMSKKDLALQQALDQITSS   79 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~   79 (271)
                      |++|+|++++|+++..      +.++...++..+..+++++++.++..++++.  +...+.++..+.+.+.++++.+++.
T Consensus        94 a~~v~e~~~~R~l~~~------~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (421)
T TIGR03600        94 ARIVREKAKERKLIAA------CQRIIDLACSDGGQTAEQKVEEAQAALLALTGMSDGQERGFVTFGEVLEDVVRDLDKR  167 (421)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhccCcCCchhHHHHHHHHHHHHHHH
Confidence            6899999999999998      7888777766553479999999999999997  5555667778899999999999886


Q ss_pred             cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcCCCC
Q 024152           80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHA  158 (271)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~e~~  158 (271)
                      ..+..           ...|+|||++.||.+++  ||++|++++|+|+||+|||+|+++++.+++ ..+.+|+||+.|++
T Consensus       168 ~~~~~-----------~~~gi~tG~~~LD~~~~--G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~  234 (421)
T TIGR03600       168 FNPKG-----------ELTGLSTGLPKLDRLTN--GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS  234 (421)
T ss_pred             hcCCC-----------CCcceeCCChhHHHHhc--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            55332           57899999999999998  999999999999999999999999999888 45668999999987


Q ss_pred             CCH----HHHHHcCCcCCc-------------------------ceecC--CCCHHHHHHHHHHHHhcC-CccEEEEcch
Q 024152          159 LDP----SLAETIGVKTEN-------------------------LLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSV  206 (271)
Q Consensus       159 ~~~----~~~~~~g~~~~~-------------------------~~~~~--~~~~~e~~~~~~~l~~~~-~~~lvvID~l  206 (271)
                      ..+    .++...+++.+.                         +.+.+  ..+.+++++.++++..++ ++++||||||
T Consensus       235 ~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyL  314 (421)
T TIGR03600       235 AEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYI  314 (421)
T ss_pred             HHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            654    333344544321                         22222  257889999999887665 7999999999


Q ss_pred             hhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152          207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH  270 (271)
Q Consensus       207 ~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~  270 (271)
                      +.+.+. .     +.    .+..++..+++.||.+|++++||||+++|++.        +|.++++++| |+
T Consensus       315 ql~~~~-~-----~~----~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~S-g~  375 (421)
T TIGR03600       315 QLMAPT-R-----GR----DRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDS-GA  375 (421)
T ss_pred             cccCCC-C-----CC----CHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhc-CC
Confidence            998631 0     11    34467889999999999999999999999973        4778899987 43

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>PRK08506 replicative DNA helicase; Provisional

Probab=100.00  E-value=1.1e-33  Score=266.27  Aligned_cols=238  Identities=18%  Similarity=0.191  Sum_probs=191.7

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG   81 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (271)
                      |+||++++++|++++.      +.++...++.... +++++++.++..++++.+.....++..+.+++.++++.+++...
T Consensus        94 a~iV~e~~~~R~li~~------~~~i~~~~~~~~~-~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (472)
T PRK08506         94 VEEIKEKSIKRELLSL------ANTIPEQAVEEDQ-KSSDILDEVERELYSITNGSNSEDFKDSKEVIESTMEHIKKQKR  166 (472)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHh
Confidence            7899999999999998      8888887776654 89999999999999998776667788889999999998887543


Q ss_pred             CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH
Q 024152           82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP  161 (271)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~  161 (271)
                      .+.          ....|+||||+.||.+++  ||++|++++|+|+||+|||+|+++++.+++..+.+|+||+.|++..+
T Consensus       167 ~~~----------~~~~Gi~TG~~~LD~~~~--G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~q  234 (472)
T PRK08506        167 LGN----------KDIIGLDTGFVELNKMTK--GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQ  234 (472)
T ss_pred             cCC----------CCCCcccCChHHHHhhcC--CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHH
Confidence            211          157899999999999997  99999999999999999999999999999877778999999988654


Q ss_pred             ----HHHHHcCCcCCc-------------------------ceecC--CCCHHHHHHHHHHHHhcC-CccEEEEcchhhh
Q 024152          162 ----SLAETIGVKTEN-------------------------LLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSVAAL  209 (271)
Q Consensus       162 ----~~~~~~g~~~~~-------------------------~~~~~--~~~~~e~~~~~~~l~~~~-~~~lvvID~l~~~  209 (271)
                          .++...+++.++                         +.+.+  ..+..++++.++++..++ ++++|+||||+.+
T Consensus       235 l~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~  314 (472)
T PRK08506        235 LMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLM  314 (472)
T ss_pred             HHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhc
Confidence                233333443322                         22222  346889999999887654 6999999999988


Q ss_pred             cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152          210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES  267 (271)
Q Consensus       210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s  267 (271)
                      ....       .  ...+..++..+++.||.+|++++||||+++|++.        +|.++++++|
T Consensus       315 ~~~~-------~--~~~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS  371 (472)
T PRK08506        315 SGSG-------N--FKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRES  371 (472)
T ss_pred             cCCC-------C--CCCHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcc
Confidence            6311       1  1135567889999999999999999999999973        5678899887

>PRK05748 replicative DNA helicase; Provisional

Probab=100.00  E-value=1.4e-32  Score=258.15  Aligned_cols=238  Identities=13%  Similarity=0.159  Sum_probs=190.0

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG   81 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (271)
                      |++|++++++|+++..      +.++...++.... +++++++.+++.++++.+.....++.++.+.+.++++.++....
T Consensus       106 a~iVke~~~~R~l~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~~~~i~~~~~~~~~~l~~~~~  178 (448)
T PRK05748        106 AKIVAEKAMLRRLIRT------ATEIANDAYEPED-DADEILDEAEKKIFEVSERRNKSGFKNIKDVLVKAYDRIEMLHN  178 (448)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhCCCC-CHHHHHHHHHHHHHHHhhccCccCCcCHHHHHHHHHHHHHHHHh
Confidence            6899999999999998      7788777776554 79999999999999998766556777888889999998887655


Q ss_pred             CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCC
Q 024152           82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD  160 (271)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~  160 (271)
                      ...           ...|+|||+++||.+++  ||++|++++|+|+||+|||+|+++++.+++.. +.+|+||+.|++..
T Consensus       179 ~~~-----------~~~gi~TG~~~LD~~~~--G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~  245 (448)
T PRK05748        179 QTG-----------DITGIPTGFTDLDKMTS--GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAE  245 (448)
T ss_pred             cCC-----------CCCCccCChHHHHHhcC--CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHH
Confidence            332           67899999999999997  99999999999999999999999999998754 66899999999876


Q ss_pred             HHH----HHHcCCcCCc-------------------------cee--cCCCCHHHHHHHHHHHHhcC-CccEEEEcchhh
Q 024152          161 PSL----AETIGVKTEN-------------------------LLL--AQPDCGEQALSLVDTLIRSG-SVDVVVVDSVAA  208 (271)
Q Consensus       161 ~~~----~~~~g~~~~~-------------------------~~~--~~~~~~~e~~~~~~~l~~~~-~~~lvvID~l~~  208 (271)
                      +..    +...+++...                         +.+  ....+..++++.+++++.+. ++++|+||||+.
T Consensus       246 ~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~l  325 (448)
T PRK05748        246 SLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQL  325 (448)
T ss_pred             HHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchh
Confidence            422    2222222211                         111  12357789999999988776 799999999998


Q ss_pred             hcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152          209 LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES  267 (271)
Q Consensus       209 ~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s  267 (271)
                      +....       . ...++.+++..+++.||.+|++++||||+++|+..        .|.++++++|
T Consensus       326 i~~~~-------~-~~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~S  384 (448)
T PRK05748        326 IQGSG-------R-SGENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRES  384 (448)
T ss_pred             cCCCC-------C-CCcCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhh
Confidence            85211       0 01145578899999999999999999999999984        5678899987

>PRK07773 replicative DNA helicase; Validated

Probab=100.00  E-value=6.3e-33  Score=278.35  Aligned_cols=239  Identities=17%  Similarity=0.193  Sum_probs=196.3

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG   81 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (271)
                      |+||+|++++|+++.+      +.++...++... .+++++++.+|+.++++++.....++.++.+++.++++.+++...
T Consensus       120 a~iV~e~s~~R~li~~------~~~i~~~a~~~~-~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~  192 (886)
T PRK07773        120 ARIVAEKALLRRLIEA------GTRIVQYGYAEG-ADVAEVVDRAQAEIYDVTDRRLSEDFVALEDLLQPTFDEIDAIAS  192 (886)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhccCcCCceeHHHHHHHHHHHHHHHHh
Confidence            7899999999999998      888888877655 489999999999999998877777888899999999999987655


Q ss_pred             CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCC
Q 024152           82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD  160 (271)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~  160 (271)
                      ++.           ..+|+|||++.||.+++  ||++|++++|+|+||||||+|+++++.+++.. +.+|+||+.|++..
T Consensus       193 ~~~-----------~~~Gi~TG~~~LD~l~~--Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~  259 (886)
T PRK07773        193 SGG-----------LARGVPTGFTELDAMTN--GLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKE  259 (886)
T ss_pred             cCC-----------CCCCccCChhHhccccC--CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence            433           67899999999999997  99999999999999999999999999999865 56899999999876


Q ss_pred             HH----HHHHcCCcCCcc-------------------------eec--CCCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152          161 PS----LAETIGVKTENL-------------------------LLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       161 ~~----~~~~~g~~~~~~-------------------------~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~  209 (271)
                      +.    ++...+++.+++                         ++.  ...+..++++.+++++++.++++|+||||+.+
T Consensus       260 ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~  339 (886)
T PRK07773        260 QLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLM  339 (886)
T ss_pred             HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhc
Confidence            52    233333332221                         111  23567889999999888888999999999998


Q ss_pred             cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152          210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH  270 (271)
Q Consensus       210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~  270 (271)
                      ....         ...++.+++.++++.||.+|+|++||||+++|++.        +|.+++|++| |-
T Consensus       340 ~~~~---------~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres-~~  398 (886)
T PRK07773        340 TSGK---------KYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRES-GC  398 (886)
T ss_pred             CCCC---------CCCCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhc-Cc
Confidence            6310         11245678999999999999999999999999995        5789999997 53

>PRK06749 replicative DNA helicase; Provisional

Probab=99.97  E-value=4.8e-32  Score=251.95  Aligned_cols=232  Identities=15%  Similarity=0.079  Sum_probs=178.2

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG   81 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (271)
                      |+||++++++|+++..      +.++...++.+   ++.++++.++..++.+.+.... +..++.+.+.+.++.+.+   
T Consensus        95 a~~v~~~~~~R~~~~~------~~~~~~~~~~~---~~~~~i~~~~~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~---  161 (428)
T PRK06749         95 EGLVRGAWKMYQAGVL------GHKMGERLIAE---KSEKIIGETITALCELEEKDCV-CEFDLKDALVDLYEELHQ---  161 (428)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhCC---CHHHHHHHHHHHHHHHHccCCC-CCccHHHHHHHHHHHHHh---
Confidence            7899999999999997      77766666543   5788999999999988765433 344677777777765532   


Q ss_pred             CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH
Q 024152           82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP  161 (271)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~  161 (271)
                      ++           ....|+||||++||.+++  ||++|++++|+|+||||||+|+++++.+++..+.+|+||+.|++..+
T Consensus       162 ~~-----------~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~q  228 (428)
T PRK06749        162 DA-----------KEITGIETGYTSLNKMTC--GLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQ  228 (428)
T ss_pred             cC-----------CCCCCccCCcHHHHHHhC--CCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHH
Confidence            11           167899999999999998  99999999999999999999999999999987778999999988654


Q ss_pred             H----HHHHcCCcCCc---------------------------ceec--CCCCHHHHHHHHHHHHhcCC--ccEEEEcch
Q 024152          162 S----LAETIGVKTEN---------------------------LLLA--QPDCGEQALSLVDTLIRSGS--VDVVVVDSV  206 (271)
Q Consensus       162 ~----~~~~~g~~~~~---------------------------~~~~--~~~~~~e~~~~~~~l~~~~~--~~lvvID~l  206 (271)
                      .    ++...+++..+                           +.+.  ...+..++.+.+++++.+++  +.+|+||||
T Consensus       229 l~~R~ls~~~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyL  308 (428)
T PRK06749        229 LLKRMASCVGEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYL  308 (428)
T ss_pred             HHHHHHHhccCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCh
Confidence            2    22222222211                           1222  22456788888998877655  559999999


Q ss_pred             hhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152          207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES  267 (271)
Q Consensus       207 ~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s  267 (271)
                      +.+.....      .  ..++.+++..+++.||.+|+|++||||++||++.        +|.+++|++|
T Consensus       309 qli~~~~~------~--~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~S  369 (428)
T PRK06749        309 QLITGDPK------H--KGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRET  369 (428)
T ss_pred             hhcCCCCC------C--CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhc
Confidence            98863110      0  1246678999999999999999999999999993        5778999987

>PHA02542 41 41 helicase; Provisional

Probab=99.97  E-value=2.3e-31  Score=249.50  Aligned_cols=238  Identities=12%  Similarity=0.038  Sum_probs=171.9

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCcc-c---cCcchHHHHHHHHHHHHH
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSG-E---ENMSKKDLALQQALDQIT   77 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~i~   77 (271)
                      |++|++++.+|+++.+      +.++...++.... +    ++.++++++++..... .   .......+++.++++.++
T Consensus        91 a~~v~~~~~~R~l~~~------~~~~~~~~~~~~~-~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ie  159 (473)
T PHA02542         91 VKETEKWCQDRAMYNA------LSKAIEIQDNADK-P----LEKRNKKLPDVGAIPDIMQEALAISFDSSVGHDYFEDYE  159 (473)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHhccCC-C----hhHhhhhccchhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            7899999999999997      7776666554432 2    4444555555411000 0   001111456777888888


Q ss_pred             HhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152           78 SSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      +.+....          ...+|+|||+++||.+++ ||+++|++++|+|+||+|||||++++|.+++..+.+|+||+.|+
T Consensus       160 ~~~~~~~----------~~~~gi~TG~~~LD~~t~-gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM  228 (473)
T PHA02542        160 ERYDSYQ----------SKANKIPFKLEILNKITK-GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEM  228 (473)
T ss_pred             HHHhhcc----------CCCCccCCCcHHHHHhcc-CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccC
Confidence            7543211          146899999999999996 69999999999999999999999999999987777999999999


Q ss_pred             CCCH----HHHHHcCCcCCcc-----------------------eec----CCCCHHHHHHHHHHHHhcCC--ccEEEEc
Q 024152          158 ALDP----SLAETIGVKTENL-----------------------LLA----QPDCGEQALSLVDTLIRSGS--VDVVVVD  204 (271)
Q Consensus       158 ~~~~----~~~~~~g~~~~~~-----------------------~~~----~~~~~~e~~~~~~~l~~~~~--~~lvvID  204 (271)
                      +..+    ..+...++..+++                       .+.    ...+..++.+.++++..+++  +++||||
T Consensus       229 ~~~ql~~Rl~a~~~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvID  308 (473)
T PHA02542        229 AEEVIAKRIDANLLDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVD  308 (473)
T ss_pred             CHHHHHHHHHHHHcCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            8764    3333344443222                       111    22457789999998876554  8999999


Q ss_pred             chhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc------ccchhhhhhh
Q 024152          205 SVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS------INLNKIIDES  267 (271)
Q Consensus       205 ~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~------~~~~~~l~~s  267 (271)
                      ||+.+.+ .....     ...++.++++.+++.||.+|+|++||||+++|++.      .|.++++++|
T Consensus       309 YLqL~~~-~~~~~-----~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreS  371 (473)
T PHA02542        309 YLGICAS-SRLRV-----SSENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAES  371 (473)
T ss_pred             chhhccC-CcccC-----CCCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccc
Confidence            9999863 11111     11246678999999999999999999999999983      3788899987

>TIGR00665 DnaB replicative DNA helicase

Probab=99.97  E-value=4.7e-31  Score=247.03  Aligned_cols=237  Identities=16%  Similarity=0.202  Sum_probs=188.0

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG   81 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (271)
                      |++|++++.+|+++..      +.++...++.... +++++++.+++.+.++.+.....++.++.+.+.++++.+++.+.
T Consensus        98 a~~v~e~~~~R~l~~~------~~~~~~~a~~~~~-~~~e~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (434)
T TIGR00665        98 AEIVKEKAILRRLIEA------GTEIVELAYDPEG-DVEELLDEAEQKIFEIAESRTSGGFKSIKEILKDTVEEIEELYE  170 (434)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHh
Confidence            6899999999999997      7777666665544 79999999999999998776666788888999999999887655


Q ss_pred             CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCCCC
Q 024152           82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALD  160 (271)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~~~  160 (271)
                      +..           ...|+|||++.||.+++  ||++|++++|+|+||+|||+|+++++.+++. .+.+|+||+.|++..
T Consensus       171 ~~~-----------~~~gi~tG~~~LD~~~~--G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~  237 (434)
T TIGR00665       171 RGG-----------GITGVPTGFTDLDKLTS--GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE  237 (434)
T ss_pred             CCC-----------CCCcccCCchhhHhhcC--CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHH
Confidence            432           57899999999999997  9999999999999999999999999999886 466899999998865


Q ss_pred             HH----HHHHcCCcCCc-------------------------ceec--CCCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152          161 PS----LAETIGVKTEN-------------------------LLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       161 ~~----~~~~~g~~~~~-------------------------~~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~  209 (271)
                      +.    ++...+++...                         +.+.  ...+.++++..++++..++++++|||||++.+
T Consensus       238 ~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i  317 (434)
T TIGR00665       238 QLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLM  317 (434)
T ss_pred             HHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhc
Confidence            42    22223333211                         1221  23467889999998888888999999999988


Q ss_pred             cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152          210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES  267 (271)
Q Consensus       210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s  267 (271)
                      .....         ..++..++..+++.|+.+|++++|||++++|+..        .|.++++++|
T Consensus       318 ~~~~~---------~~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~S  374 (434)
T TIGR00665       318 SGSGR---------SENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRES  374 (434)
T ss_pred             CCCCC---------CCCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhc
Confidence            53111         1134467888999999999999999999999864        3567788887

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>TIGR02012 tigrfam_recA protein RecA

Probab=99.97  E-value=6.4e-30  Score=227.92  Aligned_cols=193  Identities=64%  Similarity=0.966  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152           66 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus        66 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      ..++..++.+|++.|+++..+.+++ .....++.+|||++.||.+|+.||||+|.++.|+||||+|||||+++++..++.
T Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~   81 (321)
T TIGR02012         3 QKALEAALAQIEKQFGKGSIMRLGE-KSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK   81 (321)
T ss_pred             HHHHHHHHHHHHHHcCcceeEECcc-cccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3478889999999999999999884 344578899999999999997689999999999999999999999999999998


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHH
Q 024152          146 QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA  225 (271)
Q Consensus       146 ~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~  225 (271)
                      .++.|+||+.|....+.+++.+|++.+++.+.++.+.++.+..+..+.+...+++||||+++.+.+..++.++.|+.+..
T Consensus        82 ~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~  161 (321)
T TIGR02012        82 AGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVG  161 (321)
T ss_pred             cCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchh
Confidence            89999999999999888999999999999999999999998888888878889999999999998777777766666566


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          226 MQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       226 ~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      .+++.+++.++.|..++++.+||+|+++|++..+
T Consensus       162 ~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~  195 (321)
T TIGR02012       162 LQARLMSQALRKLTGALSKSNTTAIFINQIREKI  195 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEEecceecc
Confidence            7778888999999999999999999999998764

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=99.97  E-value=9.1e-30  Score=227.06  Aligned_cols=193  Identities=64%  Similarity=0.965  Sum_probs=174.4

Q ss_pred             HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152           66 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus        66 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      ..++..++.+|++.|+++..+++++. ....+..+|||++.||.+|+.||+|+|.++.|+||||+|||||+++++.+++.
T Consensus         3 ~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~   81 (325)
T cd00983           3 QKALELALKQIEKKFGKGSIMKLGDD-AVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK   81 (325)
T ss_pred             hHHHHHHHHHHHHHhCCcceEECccc-cccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34788999999999999999998864 44578899999999999998789999999999999999999999999999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHH
Q 024152          146 QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA  225 (271)
Q Consensus       146 ~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~  225 (271)
                      .++.++|++.|..+.+.+++.+|++.+++.+.++.+.++.+..+..+.++..+++||||++..++++.++.++.++.+..
T Consensus        82 ~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~  161 (325)
T cd00983          82 LGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVG  161 (325)
T ss_pred             cCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchH
Confidence            99999999999999999999999999999999999999999988888888889999999999998777777666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          226 MQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       226 ~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      .+++.+++.++.|..++++.++++|++||++..+
T Consensus       162 ~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~i  195 (325)
T cd00983         162 LQARLMSQALRKLTGSINKSNTTVIFINQLREKI  195 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence            7778899999999999999999999999998765

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK09354 recA recombinase A; Provisional

Probab=99.97  E-value=8.8e-30  Score=228.71  Aligned_cols=195  Identities=66%  Similarity=0.985  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152           64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ....++..++.+|++.|+++..+.+++. ....+..+|||++.||.+|+.||||+|.++.|+||||+|||||+++++.++
T Consensus         6 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~   84 (349)
T PRK09354          6 EKQKALEAALKQIEKQFGKGSIMRLGDD-AAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA   84 (349)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCceEcccc-cccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456889999999999999999998864 233688999999999999987899999999999999999999999999999


Q ss_pred             hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152          144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH  223 (271)
Q Consensus       144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~  223 (271)
                      +..++.++|++.|....+.+++.+|++.+++.+.++.+.++.+..+..+.++..+++||||++..+.++.++.++.++.+
T Consensus        85 ~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~  164 (349)
T PRK09354         85 QKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSH  164 (349)
T ss_pred             HHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccc
Confidence            99999999999999999999999999999999999989999999888888888999999999999987778877666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      ...+++.+++.++.|..++++.+||+|++||++..+
T Consensus       165 ~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~i  200 (349)
T PRK09354        165 VGLQARLMSQALRKLTGNISKSNTTVIFINQIREKI  200 (349)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeecc
Confidence            667788888999999999999999999999999864

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=99.96  E-value=1.7e-28  Score=218.23  Aligned_cols=192  Identities=67%  Similarity=0.990  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 024152           68 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG  147 (271)
Q Consensus        68 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~  147 (271)
                      ++..++++|++.|+++..+++++......++.+|||++.||..+++||+|+|.++.|+|++|+|||||++.++.++...+
T Consensus         2 ~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g   81 (322)
T PF00154_consen    2 ALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQG   81 (322)
T ss_dssp             HHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhccc
Confidence            57889999999999999999987655667899999999999999889999999999999999999999999999998888


Q ss_pred             CeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHH
Q 024152          148 GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ  227 (271)
Q Consensus       148 g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~  227 (271)
                      +.++|++.|..+++.+++.+|++++++.+.++.+.++.++.+..+.+...+++|||||+..+.|+.++.+..++.+.+.+
T Consensus        82 ~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~  161 (322)
T PF00154_consen   82 GICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQ  161 (322)
T ss_dssp             -EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHH
T ss_pred             ceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcch
Confidence            99999999999999999999999999999999999999999999888888999999999999998888887788788899


Q ss_pred             HHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          228 ARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       228 ~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      +|.+++.+|.+...+.+.++++|++||+++++
T Consensus       162 Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~i  193 (322)
T PF00154_consen  162 ARLMSQALRKLTPLLSKSNTTLIFINQVRDKI  193 (322)
T ss_dssp             HHHHHHHHHHHHHHHHTTT-EEEEEEEESSSS
T ss_pred             HHHHHHHHHHHHHHHHhhceEEEEeehHHHHH
Confidence            99999999999999999999999999999876

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=99.94  E-value=5e-26  Score=221.56  Aligned_cols=195  Identities=60%  Similarity=0.945  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152           64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..+..+..++.+|++.|++++.+.+++. ....+..++||++.||.+|+.||+++|.++.|+|+||+|||||+++++.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a   84 (790)
T PRK09519          6 DREKALELAVAQIEKSYGKGSVMRLGDE-ARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA   84 (790)
T ss_pred             HHHHHHHHHHHHHHHHhccchhcccccc-cccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455788999999999999998877753 345678999999999999976799999999999999999999999999999


Q ss_pred             hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152          144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH  223 (271)
Q Consensus       144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~  223 (271)
                      +..++.++|++.|..+...+++.+|++++++.+.++.+.++.+..+..+..+..++++|||+++.++++.++.+..+..+
T Consensus        85 ~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~  164 (790)
T PRK09519         85 QAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSH  164 (790)
T ss_pred             HHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCccc
Confidence            98899999999999999889999999999999988889999888888887778899999999999997788877666555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      ...+++.+++.++.|..++++.|+++|+++|++..+
T Consensus       165 ~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~  200 (790)
T PRK09519        165 VGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKI  200 (790)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecC
Confidence            567778888999999999999999999999999865

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=99.93  E-value=3e-25  Score=200.30  Aligned_cols=171  Identities=27%  Similarity=0.423  Sum_probs=133.7

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~  165 (271)
                      ...+++||+++||.+++ ||+++|++++|+|+||+|||+|+++++.++..      .+++|+|+++|..+..    .+++
T Consensus       101 ~~~~i~tG~~~LD~lL~-GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~  179 (342)
T PLN03186        101 EIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE  179 (342)
T ss_pred             CcceeCCCCHHHHHhhc-CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence            57889999999999999 99999999999999999999999999987652      2358999999998765    3455


Q ss_pred             HcCCcC----CcceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          166 TIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       166 ~~g~~~----~~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      .+++++    +++.+....+.+++...+..   +....+++++||||++.++ +.++.++ ++  ...+++.+.+.++.|
T Consensus       180 ~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alf-r~~~~~~-g~--l~~r~~~L~~~l~~L  255 (342)
T PLN03186        180 RFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALY-RTEFSGR-GE--LSARQMHLGKFLRSL  255 (342)
T ss_pred             HcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHH-HHHhcCC-cc--HHHHHHHHHHHHHHH
Confidence            667765    45666666777766554433   3456689999999999987 3444332 21  123455688899999


Q ss_pred             HHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152          239 SHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL  271 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~  271 (271)
                      +++|++++++|+++||+...+          +.|.++..|+|+
T Consensus       256 ~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~  298 (342)
T PLN03186        256 QRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHA  298 (342)
T ss_pred             HHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhh
Confidence            999999999999999997543          368899999985

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=99.93  E-value=2.2e-24  Score=188.63  Aligned_cols=191  Identities=54%  Similarity=0.829  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152           66 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus        66 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      ..+.......+++.++......++.......+..++||...||.++| ||+|.|.++.|+||+|+||||+|++++.+++.
T Consensus         8 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~   86 (279)
T COG0468           8 EKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLVANAQK   86 (279)
T ss_pred             hhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhc-CCcccceEEEEecCCCcchhhHHHHHHHHhhc
Confidence            34445555666666665443333222233468899999999999999 99999999999999999999999999999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHcCCc-CCcceecCCCCHHHHHHHHHHHHhcCC--ccEEEEcchhhhcCCCccCCccchh
Q 024152          146 QGGYCVFIDAEHALDPSLAETIGVK-TENLLLAQPDCGEQALSLVDTLIRSGS--VDVVVVDSVAALVPKGELDGEMGDA  222 (271)
Q Consensus       146 ~~g~v~~~~~e~~~~~~~~~~~g~~-~~~~~~~~~~~~~e~~~~~~~l~~~~~--~~lvvID~l~~~~~~~~l~~~~g~~  222 (271)
                      .++.++|+++|..+.+.+...++.. .+++.+.++.+.++.+..+..+.....  ++++|||++..+++.....    ..
T Consensus        87 ~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~----d~  162 (279)
T COG0468          87 PGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE----DG  162 (279)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC----cc
Confidence            9999999999999999999999988 999999999999988888777665555  9999999999998643322    34


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccccch
Q 024152          223 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLN  261 (271)
Q Consensus       223 ~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~~~  261 (271)
                      ....+++.+++.++.|..++++++++|+++||++.++..
T Consensus       163 ~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~  201 (279)
T COG0468         163 HLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGV  201 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCc
Confidence            456788999999999999999999999999999988754

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=99.92  E-value=4.1e-24  Score=191.26  Aligned_cols=171  Identities=29%  Similarity=0.427  Sum_probs=134.9

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~  165 (271)
                      ....++||++.||.+++ ||+++|.+++|+|+||+|||+||++++.+++.      .+++|+|+++|..+..    .++.
T Consensus        74 ~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~  152 (313)
T TIGR02238        74 KVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAE  152 (313)
T ss_pred             cCceeCCCCHHHHHHhC-CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence            56789999999999999 99999999999999999999999999987763      2568999999998765    3456


Q ss_pred             HcCCcCC----cceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          166 TIGVKTE----NLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       166 ~~g~~~~----~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      .++++++    ++.+.+..+.++....+..   ...+.+++++|||+++.++. .++.++ |+  ...+++.+.+.+..|
T Consensus       153 ~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r-~~~~~~-g~--~~~r~~~l~~~~~~L  228 (313)
T TIGR02238       153 RFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFR-VDFSGR-GE--LSERQQKLAQMLSRL  228 (313)
T ss_pred             HcCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhh-hhccCc-cc--hHHHHHHHHHHHHHH
Confidence            6777653    5667777777776655443   34456899999999998873 444431 21  223455678888899


Q ss_pred             HHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152          239 SHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL  271 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~  271 (271)
                      .++|++++++|+++||++.++          ..|.++..|+|+
T Consensus       229 ~~la~~~~vavvitNqv~~~~~~~~~~~~~~~~p~gG~~~~h~  271 (313)
T TIGR02238       229 NKISEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHA  271 (313)
T ss_pred             HHHHHHcCcEEEEECceEecCCcccccCCCCccCcchhhhhhh
Confidence            999999999999999999764          357788899985

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=99.92  E-value=4.7e-24  Score=192.32  Aligned_cols=171  Identities=28%  Similarity=0.402  Sum_probs=135.9

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~  165 (271)
                      ....++||++.||.+++ ||++.|.+++|+|+||+|||+||++++.+.+.      .+++|+|+++|..+.+    .+++
T Consensus       104 ~~~~isTG~~~LD~lLg-GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~  182 (344)
T PLN03187        104 SVVRITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAE  182 (344)
T ss_pred             cCceecCCcHhHHhhcC-CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHH
Confidence            46789999999999999 99999999999999999999999999987763      1358999999998776    3455


Q ss_pred             HcCCcC----CcceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          166 TIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       166 ~~g~~~----~~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      .+|+++    +++.+.+..+.+++...+..   ...+.+++++|||+++.++ +.++.++ ++  ...+++.+.+.++.|
T Consensus       183 ~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~-r~~~~~r-g~--l~~rq~~L~~~~~~L  258 (344)
T PLN03187        183 RFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALF-RVDFTGR-GE--LAERQQKLAQMLSRL  258 (344)
T ss_pred             HcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhh-hccccCc-cc--hHHHHHHHHHHHHHH
Confidence            677765    45677777888876555443   3445679999999999887 4544432 21  224556688888999


Q ss_pred             HHHHhhcCcEEEEEccccccc---------chhhhhhhccCC
Q 024152          239 SHSLSLSQTILIFINQVFSIN---------LNKIIDESSGHL  271 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~~~---------~~~~l~~s~~~~  271 (271)
                      +++|+++|++|+++||.+.++         ..|..+.+|+|+
T Consensus       259 ~~lA~~~~vavvvTNqv~~~~~~~~~~~~~~~pagG~~~~h~  300 (344)
T PLN03187        259 TKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHA  300 (344)
T ss_pred             HHHHHHcCCEEEEEecEEEcCCcccccCCCCCCCCchhhhee
Confidence            999999999999999998755         247789999985

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=99.92  E-value=2.6e-24  Score=192.93  Aligned_cols=171  Identities=29%  Similarity=0.459  Sum_probs=130.6

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh---cC---CeEEEEcCCCCCCHH----HHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QG---GYCVFIDAEHALDPS----LAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~---~~---g~v~~~~~e~~~~~~----~~~  165 (271)
                      ...+++||+++||.+++ ||+++|++++|+|+||+|||+|+++++.++..   .+   ++|+|+++|..+.+.    +++
T Consensus        74 ~~~~~~tg~~~lD~ll~-gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~  152 (316)
T TIGR02239        74 EVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAE  152 (316)
T ss_pred             ccceeCCCCHHHHHHhc-CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHH
Confidence            57889999999999999 99999999999999999999999999986552   22   478999999876652    455


Q ss_pred             HcCCcCC----cceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          166 TIGVKTE----NLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       166 ~~g~~~~----~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      .+++.++    ++.+....+.+++...+..   .....++++||||+++.++ +.++.+. +  ....+++.+.+.++.|
T Consensus       153 ~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~-r~~~~~~-~--~~~~rq~~l~~~~~~L  228 (316)
T TIGR02239       153 RYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALY-RTDFSGR-G--ELSARQMHLARFLRSL  228 (316)
T ss_pred             HcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHh-hhhcCCc-c--hHHHHHHHHHHHHHHH
Confidence            5677654    3455555666665544433   3445679999999999987 3443321 1  2224556678889999


Q ss_pred             HHHHhhcCcEEEEEccccccc-----------chhhhhhhccCC
Q 024152          239 SHSLSLSQTILIFINQVFSIN-----------LNKIIDESSGHL  271 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~~~-----------~~~~l~~s~~~~  271 (271)
                      +++|++++++|+++||++.++           ..|.++..|+|+
T Consensus       229 ~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~  272 (316)
T TIGR02239       229 QRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHA  272 (316)
T ss_pred             HHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhh
Confidence            999999999999999999543           357789999995

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=99.91  E-value=1.8e-23  Score=179.14  Aligned_cols=167  Identities=46%  Similarity=0.626  Sum_probs=130.6

Q ss_pred             cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEcCCCCCCHHH----HHHcCC
Q 024152          100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDPSL----AETIGV  169 (271)
Q Consensus       100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~------g~v~~~~~e~~~~~~~----~~~~g~  169 (271)
                      ++||++.||.+++ ||+++|++++|.|+||+|||+|+++++.+....+      +.|+|++.|..+...+    ....+.
T Consensus         1 i~tG~~~lD~~l~-GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~   79 (226)
T cd01393           1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL   79 (226)
T ss_pred             CCCCcHHHHHHhC-CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhcc
Confidence            5899999999998 8999999999999999999999999999987665      7899999998766522    223333


Q ss_pred             c----CCcceecCCCCHHHHHHHHHHHHh---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024152          170 K----TENLLLAQPDCGEQALSLVDTLIR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL  242 (271)
Q Consensus       170 ~----~~~~~~~~~~~~~e~~~~~~~l~~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~la  242 (271)
                      .    .+++.+....+.+++...++.+..   ..+++++|||+++.++. ..+.+   ......+.+.+.+.++.|+.+|
T Consensus        80 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~-~~~~~---~~~~~~~~~~l~~~~~~L~~~a  155 (226)
T cd01393          80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR-KEFIG---RGMLAERARLLSQALRKLLRLA  155 (226)
T ss_pred             chhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhh-hhhcC---CchHHHHHHHHHHHHHHHHHHH
Confidence            2    456777777888888887777654   67899999999998864 22111   1112345667888899999999


Q ss_pred             hhcCcEEEEEccccccc-------chhhhhhhccCC
Q 024152          243 SLSQTILIFINQVFSIN-------LNKIIDESSGHL  271 (271)
Q Consensus       243 ke~~~~Vi~~sql~~~~-------~~~~l~~s~~~~  271 (271)
                      ++++++||+++|+....       ..+.++..|.|.
T Consensus       156 ~~~~~~vi~tnq~~~~~~~~~~~~~~p~~G~~~~~~  191 (226)
T cd01393         156 DKFNVAVVFTNQVRAKVDVMFGDPETPAGGNALAHA  191 (226)
T ss_pred             HHhCcEEEEEEEEeeecccccCCCccccCchhhhCc
Confidence            99999999999998643       346778888874

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=99.91  E-value=7.2e-24  Score=185.05  Aligned_cols=171  Identities=32%  Similarity=0.515  Sum_probs=129.2

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHH----HHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~----~~~  165 (271)
                      ....|+||++.||.+|+ ||++.|.+++|+|+||+|||.||++++.++..      .+++|+||++|..+...    +++
T Consensus        16 ~~~~i~Tg~~~lD~~L~-GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~   94 (256)
T PF08423_consen   16 RWSRISTGCKSLDELLG-GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE   94 (256)
T ss_dssp             TS-EE--SSHHHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred             cCCeeCCCCHHHHHhhC-CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence            34569999999999999 99999999999999999999999999998763      24589999999988753    344


Q ss_pred             HcCCc----CCcceecCCCCHHHHHHHHHHH---HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          166 TIGVK----TENLLLAQPDCGEQALSLVDTL---IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       166 ~~g~~----~~~~~~~~~~~~~e~~~~~~~l---~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      +.+..    .+++.+....+.+++...+..+   ..+.++++||||++..++ +.++.+.   .....+++.+...++.|
T Consensus        95 ~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf-r~e~~~~---~~~~~R~~~L~~~~~~L  170 (256)
T PF08423_consen   95 RFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF-RSEFSGR---GDLAERQRMLARLARIL  170 (256)
T ss_dssp             HTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH-HHHSGST---TTHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH-HHHHccc---hhhHHHHHHHHHHHHHH
Confidence            44543    3566777777887776655443   345789999999999887 3444321   12335677888999999


Q ss_pred             HHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152          239 SHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL  271 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~  271 (271)
                      +.+|++++++||++||+.+.+          .-|.++.+|+|+
T Consensus       171 ~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~  213 (256)
T PF08423_consen  171 KRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHA  213 (256)
T ss_dssp             HHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHH
T ss_pred             HHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhh
Confidence            999999999999999999653          446899999984

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PTZ00035 Rad51 protein; Provisional

Probab=99.91  E-value=4e-23  Score=186.76  Aligned_cols=171  Identities=26%  Similarity=0.428  Sum_probs=134.8

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-h-----cCCeEEEEcCCCCCCH----HHHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-R-----QGGYCVFIDAEHALDP----SLAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~-----~~g~v~~~~~e~~~~~----~~~~  165 (271)
                      ....++||++.||.+++ ||+++|++++|+|+||+|||+|+++++.+.. +     .+++|+|+++|..+.+    .+++
T Consensus        96 ~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~  174 (337)
T PTZ00035         96 NIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAE  174 (337)
T ss_pred             cCccccCCcHHHHHHhC-CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence            46789999999999999 9999999999999999999999999998877 2     4678999999988765    3455


Q ss_pred             HcCCcC----CcceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          166 TIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       166 ~~g~~~----~~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      .+++.+    +++.+....+.++....+..   .....+++++|||+++.++ +.++.++ +  ....+++.+.+.++.|
T Consensus       175 ~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~-r~~~~~~-~--~~~~r~~~l~~~~~~L  250 (337)
T PTZ00035        175 RFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALF-RVDYSGR-G--ELAERQQHLGKFLRAL  250 (337)
T ss_pred             HhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhh-hhhccCc-c--cHHHHHHHHHHHHHHH
Confidence            667664    55666777777766655433   3345789999999999987 3444332 1  1234566788899999


Q ss_pred             HHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152          239 SHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL  271 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~  271 (271)
                      +++|++++++|+++||++..+          ..|..+..|+|+
T Consensus       251 ~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~  293 (337)
T PTZ00035        251 QKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHA  293 (337)
T ss_pred             HHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhh
Confidence            999999999999999999763          356788899884

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=99.90  E-value=1.2e-23  Score=184.31  Aligned_cols=158  Identities=25%  Similarity=0.255  Sum_probs=117.7

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEcCCCCCCH----HHHHHcCCcCCc
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALDP----SLAETIGVKTEN  173 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~~e~~~~~----~~~~~~g~~~~~  173 (271)
                      ||||||+.||.+++  |+.+|++++|+|+||+|||+|+++++.+++..+ .+|+||+.|++..+    .++...++...+
T Consensus         1 Gi~TG~~~LD~~lg--G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~   78 (259)
T PF03796_consen    1 GIPTGFPALDRLLG--GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNK   78 (259)
T ss_dssp             SB-SSTHHHHHHHS--SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHH
T ss_pred             CCCCChHHHHHHhc--CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhh
Confidence            68999999999998  999999999999999999999999999999874 69999999988654    333334443211


Q ss_pred             -------------------------cee--cCCCCHHHHHHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHH
Q 024152          174 -------------------------LLL--AQPDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMA  225 (271)
Q Consensus       174 -------------------------~~~--~~~~~~~e~~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~  225 (271)
                                               +.+  .+..+.+++.+.++.+... .++++|+|||++.+.+....     .    
T Consensus        79 i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~-----~----  149 (259)
T PF03796_consen   79 IRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSS-----D----  149 (259)
T ss_dssp             HHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSS-----S----
T ss_pred             hhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCC-----C----
Confidence                                     121  1345778888888888777 78999999999998753211     1    


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc--------cchhhhhhh
Q 024152          226 MQARLMSQALRKLSHSLSLSQTILIFINQVFSI--------NLNKIIDES  267 (271)
Q Consensus       226 ~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~--------~~~~~l~~s  267 (271)
                      .+...+..+++.|+.+|+++++|||+++|+...        |.+.++++|
T Consensus       150 ~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~s  199 (259)
T PF03796_consen  150 NRRQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRES  199 (259)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCST
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhh
Confidence            122557788889999999999999999999743        445566655

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>cd01394 radB RadB

Probab=99.89  E-value=1.9e-22  Score=172.15  Aligned_cols=154  Identities=28%  Similarity=0.402  Sum_probs=113.1

Q ss_pred             cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCC----cCCcce
Q 024152          100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV----KTENLL  175 (271)
Q Consensus       100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~----~~~~~~  175 (271)
                      +|||+++||.+++ ||+++|+++.|.|+||+|||||+++++.+.+..+++|+|++.|..+...+.+..+.    ...++.
T Consensus         1 i~TGi~~LD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~   79 (218)
T cd01394           1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSII   79 (218)
T ss_pred             CCcchhHHHHHhc-CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEE
Confidence            5899999999998 99999999999999999999999999999988888999999887665333222221    224555


Q ss_pred             ecCCCCHHHHHHHHHHHH--hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          176 LAQPDCGEQALSLVDTLI--RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       176 ~~~~~~~~e~~~~~~~l~--~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      +.++.+..++...+..+.  ...++++++||+++.++. .+....   .....+.+.+.+.++.|+.+|++++++||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~l~~-~~~~~~---~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~  155 (218)
T cd01394          80 VFEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYR-LELGDD---DTTIKNYRELAKQLTFLLWLARKHDVAVVITN  155 (218)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcCCcEEEEechHHhhh-HHhcCc---cchHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence            656666555544333221  123589999999998862 222211   11124455677888889999999999999999


Q ss_pred             ccccc
Q 024152          254 QVFSI  258 (271)
Q Consensus       254 ql~~~  258 (271)
                      |+...
T Consensus       156 q~~~~  160 (218)
T cd01394         156 QVYSD  160 (218)
T ss_pred             CCEEc
Confidence            99753

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=99.88  E-value=7.9e-22  Score=169.11  Aligned_cols=153  Identities=30%  Similarity=0.490  Sum_probs=113.7

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHH-cC----CcCCc
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET-IG----VKTEN  173 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~-~g----~~~~~  173 (271)
                      .++||+++||.+++ ||+++|.++.|.|+||+|||+|+++++.+.+..+++|+|++.| .+....... ..    -..++
T Consensus         4 ~i~tGi~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~~   81 (225)
T PRK09361          4 RLPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLSN   81 (225)
T ss_pred             cccCCcHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhhC
Confidence            58999999999998 9999999999999999999999999999998888899999999 443322111 11    12345


Q ss_pred             ceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEE
Q 024152          174 LLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILI  250 (271)
Q Consensus       174 ~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi  250 (271)
                      +.+..+.+.+++...++.   +.. .+++++|||++..++. .++.+.   .....+.+.+.+.+..|++++++++++|+
T Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~-~~~~~~---~~~~~~~~~l~~~l~~L~~~a~~~~v~vi  156 (225)
T PRK09361         82 IIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYR-LELEDE---EDNSKLNRELGRQLTHLLKLARKHDLAVV  156 (225)
T ss_pred             eEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhH-HHhcCC---ccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence            666666666655444333   232 6899999999998763 222111   11123456677888889999999999999


Q ss_pred             EEcccccc
Q 024152          251 FINQVFSI  258 (271)
Q Consensus       251 ~~sql~~~  258 (271)
                      +++|....
T Consensus       157 ~tnq~~~~  164 (225)
T PRK09361        157 ITNQVYSD  164 (225)
T ss_pred             EEccceec
Confidence            99998864

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=99.88  E-value=8.3e-22  Score=169.80  Aligned_cols=166  Identities=31%  Similarity=0.489  Sum_probs=123.4

Q ss_pred             cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCHH----HHHHcCC
Q 024152          100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LAETIGV  169 (271)
Q Consensus       100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~~----~~~~~g~  169 (271)
                      +|||++.||.+++ ||+++|++++|.|+||+|||+|+++++.+....      ++.|+|++.|..+...    +.+..++
T Consensus         1 ~~tG~~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~   79 (235)
T cd01123           1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL   79 (235)
T ss_pred             CCCCchhhHhhcc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhcc
Confidence            5899999999999 999999999999999999999999999876543      3689999999876542    2333444


Q ss_pred             cC----CcceecCCCCHHHHHHH---HHHHHhcC-CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 024152          170 KT----ENLLLAQPDCGEQALSL---VDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS  241 (271)
Q Consensus       170 ~~----~~~~~~~~~~~~e~~~~---~~~l~~~~-~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~l  241 (271)
                      .+    +++.+....+.+++...   +.....+. +++++|||+++.++. ..+.+   ......+.+.+.+.++.|+++
T Consensus        80 ~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~-~~~~~---~~~~~~r~~~l~~~~~~L~~l  155 (235)
T cd01123          80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR-AEFDG---RGELAERQQHLAKLLRTLKRL  155 (235)
T ss_pred             ChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH-HHhcC---CccHHHHHHHHHHHHHHHHHH
Confidence            33    45566666666665443   33444455 899999999998762 22211   111235566788899999999


Q ss_pred             HhhcCcEEEEEccccccc----------chhhhhhhccC
Q 024152          242 LSLSQTILIFINQVFSIN----------LNKIIDESSGH  270 (271)
Q Consensus       242 ake~~~~Vi~~sql~~~~----------~~~~l~~s~~~  270 (271)
                      |++++++|++++|....+          ..+.++..|.|
T Consensus       156 a~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~  194 (235)
T cd01123         156 ADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAH  194 (235)
T ss_pred             HHHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhC
Confidence            999999999999998643          24667888877

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=99.88  E-value=1.5e-21  Score=175.29  Aligned_cols=171  Identities=27%  Similarity=0.444  Sum_probs=128.5

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHH----HHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~----~~~  165 (271)
                      .+..++||.+.+|.+++ ||++.|.+++|+|+||+|||+|+++++.+++.      .++.|+|+++|..+...    ++.
T Consensus        73 s~~~~~Tg~~~lD~~l~-GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~  151 (310)
T TIGR02236        73 TIGKITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE  151 (310)
T ss_pred             cCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence            56779999999999999 99999999999999999999999999998763      24589999999977652    344


Q ss_pred             HcCCcC----CcceecCCCCHHHH---HHHHHHHHhcC--CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHH
Q 024152          166 TIGVKT----ENLLLAQPDCGEQA---LSLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR  236 (271)
Q Consensus       166 ~~g~~~----~~~~~~~~~~~~e~---~~~~~~l~~~~--~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r  236 (271)
                      .++++.    +++.+....+.++.   +..+..+..+.  .++++|||+++.++ +.++.+.   .....+++.+.+.+.
T Consensus       152 ~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~-r~e~~~~---~~~~~r~~~l~~~~~  227 (310)
T TIGR02236       152 ARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHF-RAEYVGR---GALAERQQKLNKHLH  227 (310)
T ss_pred             HcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhh-hHhhcCc---hhHHHHHHHHHHHHH
Confidence            556653    44555555554442   22233344443  48899999999886 3444332   112245566778888


Q ss_pred             HHHHHHhhcCcEEEEEccccccc-------chhhhhhhccCC
Q 024152          237 KLSHSLSLSQTILIFINQVFSIN-------LNKIIDESSGHL  271 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~~~-------~~~~l~~s~~~~  271 (271)
                      .|+.+|++++++|+++||++..+       ..+..+..|+|+
T Consensus       228 ~L~~~a~~~~~~v~~tnqv~~~~~~~~~~~~~~~~G~~~~h~  269 (310)
T TIGR02236       228 DLLRLADLYNAAVVVTNQVMARPDAFFGDPTRPIGGHILGHA  269 (310)
T ss_pred             HHHHHHHHhCcEEEEeceeeecCccccCccccCCcchhhhhh
Confidence            89999999999999999998764       467889999995

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=99.87  E-value=2.2e-21  Score=177.25  Aligned_cols=152  Identities=27%  Similarity=0.394  Sum_probs=122.0

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN  173 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~  173 (271)
                      ...+++||+++||++++ ||+++|+++.|.|+||+|||||+++++.+.+..+++|+|++.|++..+  .+++++++..++
T Consensus        60 ~~~ri~TGi~eLD~vLg-GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~  138 (372)
T cd01121          60 EEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTEN  138 (372)
T ss_pred             ccCccccCCHHHHHhhc-CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCccc
Confidence            45689999999999999 999999999999999999999999999999988889999999877654  346678888888


Q ss_pred             ceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       174 ~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      +.+....+.+++.+.+.    ..++++++||+++.++. .+....+|..   .   .+.+.+..|.+++++.++++++++
T Consensus       139 l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~---qvr~~~~~L~~lak~~~itvilvg  207 (372)
T cd01121         139 LYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYS-SELTSAPGSV---S---QVRECTAELMRFAKERNIPIFIVG  207 (372)
T ss_pred             EEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhc-cccccCCCCH---H---HHHHHHHHHHHHHHHcCCeEEEEe
Confidence            88777677777666543    45799999999999863 3332222322   1   244556677888999999999999


Q ss_pred             cccccc
Q 024152          254 QVFSIN  259 (271)
Q Consensus       254 ql~~~~  259 (271)
                      |.++..
T Consensus       208 hvtk~g  213 (372)
T cd01121         208 HVTKEG  213 (372)
T ss_pred             eccCCC
Confidence            988653

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR00416 sms DNA repair protein RadA

Probab=99.87  E-value=1.8e-21  Score=182.44  Aligned_cols=151  Identities=23%  Similarity=0.331  Sum_probs=121.2

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN  173 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~  173 (271)
                      ...+++||+++||++++ ||+++|++++|.|+||+|||||+++++.+.+..+++|+|++.|++..+  ..+.+++++.++
T Consensus        72 ~~~ri~TGi~~LD~vLg-GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~  150 (454)
T TIGR00416        72 EVPRFSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPN  150 (454)
T ss_pred             ccCccccCcHHHHHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHH
Confidence            46789999999999999 999999999999999999999999999999888889999999987665  345678888888


Q ss_pred             ceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       174 ~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      +.+....+.+++...+    .+.++++++||+++.++. .+....+|..   .+   +.+.+..|+++|++.|+|+++++
T Consensus       151 l~~~~e~~~~~I~~~i----~~~~~~~vVIDSIq~l~~-~~~~~~~g~~---~q---~r~~~~~L~~~ak~~giTvllt~  219 (454)
T TIGR00416       151 LYVLSETNWEQICANI----EEENPQACVIDSIQTLYS-PDISSAPGSV---SQ---VRECTAELMRLAKTRGIAIFIVG  219 (454)
T ss_pred             eEEcCCCCHHHHHHHH----HhcCCcEEEEecchhhcc-cccccCCCCH---HH---HHHHHHHHHHHHHHhCCEEEEEe
Confidence            8887777777666554    345799999999999873 3333323322   22   33456677788999999999999


Q ss_pred             ccccc
Q 024152          254 QVFSI  258 (271)
Q Consensus       254 ql~~~  258 (271)
                      |..+.
T Consensus       220 hvtke  224 (454)
T TIGR00416       220 HVTKE  224 (454)
T ss_pred             ccccC
Confidence            98754

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=99.87  E-value=4.9e-21  Score=172.45  Aligned_cols=171  Identities=29%  Similarity=0.469  Sum_probs=127.5

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCH----HHHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP----SLAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~----~~~~  165 (271)
                      .+..++||+++||.+++ ||+++|.+++|+|+||+|||+|+++++.+++..      +++++|+++|..+..    .++.
T Consensus        80 s~~~~~Tg~~~lD~~l~-GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~  158 (317)
T PRK04301         80 NVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE  158 (317)
T ss_pred             cCCccCCCCHHHHHHhc-CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence            46779999999999999 999999999999999999999999999887642      358999999997664    3345


Q ss_pred             HcCCcCC----cceecCCCCHHHH---HHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHH
Q 024152          166 TIGVKTE----NLLLAQPDCGEQA---LSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK  237 (271)
Q Consensus       166 ~~g~~~~----~~~~~~~~~~~e~---~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~  237 (271)
                      .++++++    ++.+....+.++.   +..+..+..+ .+++++|||+++.++ +.++.+. +  ....+++.+.+.+..
T Consensus       159 ~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~-~~~~~~~-~--~~~~r~~~l~~~~~~  234 (317)
T PRK04301        159 ALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHF-RAEYVGR-G--NLAERQQKLNKHLHD  234 (317)
T ss_pred             HcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHh-hhhccCC-c--cHHHHHHHHHHHHHH
Confidence            5677653    3445555544433   3334444444 679999999999987 3433321 1  112345557777888


Q ss_pred             HHHHHhhcCcEEEEEccccccc-------chhhhhhhccCC
Q 024152          238 LSHSLSLSQTILIFINQVFSIN-------LNKIIDESSGHL  271 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~~~-------~~~~l~~s~~~~  271 (271)
                      |+++|++++++||+++|..+.+       ..+..+..|+|+
T Consensus       235 L~~la~~~~vavl~tnqv~~~~~~~~~~~~~~~~G~~~~~~  275 (317)
T PRK04301        235 LLRLADLYNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHT  275 (317)
T ss_pred             HHHHHHHhCCEEEEeceEEeccccccCccccCCcchHhHhh
Confidence            9999999999999999988754       357778888884

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.9e-21  Score=173.51  Aligned_cols=150  Identities=29%  Similarity=0.424  Sum_probs=130.0

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN  173 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~  173 (271)
                      ..++++||+.+||+.+| ||+-+|.++.|.|.||.|||||+++++..++..+ +|+|+++|++..+  .++.++++..++
T Consensus        71 ~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~  148 (456)
T COG1066          71 EEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNN  148 (456)
T ss_pred             ecccccCChHHHHhhhc-CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccc
Confidence            56889999999999999 9999999999999999999999999999999877 8999999999876  778899999999


Q ss_pred             ceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       174 ~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      +.+...++.+++++.+..    .+++++||||+|.++ .+++...||.-   .+.|+.   ...|.++||+.|++++++-
T Consensus       149 l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~-s~~~~SapGsV---sQVRe~---t~~L~~~AK~~~i~~fiVG  217 (456)
T COG1066         149 LYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLY-SEEITSAPGSV---SQVREV---AAELMRLAKTKNIAIFIVG  217 (456)
T ss_pred             eEEehhcCHHHHHHHHHh----cCCCEEEEeccceee-cccccCCCCcH---HHHHHH---HHHHHHHHHHcCCeEEEEE
Confidence            999988889988876554    689999999999998 46666666653   555554   4555666999999999999


Q ss_pred             ccccc
Q 024152          254 QVFSI  258 (271)
Q Consensus       254 ql~~~  258 (271)
                      |+++.
T Consensus       218 HVTKe  222 (456)
T COG1066         218 HVTKE  222 (456)
T ss_pred             EEccc
Confidence            99964

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=99.86  E-value=7.2e-21  Score=166.62  Aligned_cols=144  Identities=23%  Similarity=0.319  Sum_probs=110.3

Q ss_pred             ccccCcHHHHHHh--------------cCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH---
Q 024152           99 VVSTGSFALDIAL--------------GTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP---  161 (271)
Q Consensus        99 ~i~Tg~~~LD~~l--------------~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~---  161 (271)
                      ++|||++.||.++              + ||+++|.++.|+|+||+|||+|+++++.+.+..+++++|++.|+....   
T Consensus         3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~-GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~   81 (259)
T TIGR03878         3 GVPTGVEGLDELFFKVEIEEGKIVRKPL-GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYT   81 (259)
T ss_pred             CccCCchhHHHhhccccccccccccccC-CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHH
Confidence            6899999999999              5 799999999999999999999999999998888889999999975532   


Q ss_pred             ---HHHHHcCCcCC----cceecCCC-------CHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHH
Q 024152          162 ---SLAETIGVKTE----NLLLAQPD-------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ  227 (271)
Q Consensus       162 ---~~~~~~g~~~~----~~~~~~~~-------~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~  227 (271)
                         ..+..+|++.+    ++.+.+..       +.++++..+...+.+.+++++|||+++.++..        ..     
T Consensus        82 ~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~--------~~-----  148 (259)
T TIGR03878        82 SLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEA--------KE-----  148 (259)
T ss_pred             HHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhccc--------ch-----
Confidence               12455677653    34443332       24556666777777789999999999877521        00     


Q ss_pred             HHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          228 ARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       228 ~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                       ....+.++.|..++++.++|+++++|...
T Consensus       149 -~~~r~~~~~L~~~lk~~~~t~ll~~e~~~  177 (259)
T TIGR03878       149 -MMAREIVRQLFNFMKKWYQTALFVSQKRS  177 (259)
T ss_pred             -HHHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence             11335667777888999999999999654

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK11823 DNA repair protein RadA; Provisional

Probab=99.86  E-value=1.2e-20  Score=176.74  Aligned_cols=151  Identities=29%  Similarity=0.406  Sum_probs=120.7

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN  173 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~  173 (271)
                      ...+++||+++||++++ ||+++|+++.|.|+||+|||||+++++.+.+..+++|+|++.|++..+  .++++++++.++
T Consensus        58 ~~~ri~TGi~~LD~~Lg-GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~  136 (446)
T PRK11823         58 EEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDN  136 (446)
T ss_pred             cCCcccCCcHHHHHHhc-CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhc
Confidence            45789999999999999 999999999999999999999999999999877889999999987765  346778888888


Q ss_pred             ceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       174 ~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      +.+....+.++++..+    .+.+++++|||+++.++. .++.+.+|..   .   .+.+.+..|.+++++.++++++++
T Consensus       137 l~~~~e~~l~~i~~~i----~~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~---qvr~~~~~L~~~ak~~~itvilv~  205 (446)
T PRK11823        137 LYLLAETNLEAILATI----EEEKPDLVVIDSIQTMYS-PELESAPGSV---S---QVRECAAELMRLAKQRGIAVFLVG  205 (446)
T ss_pred             EEEeCCCCHHHHHHHH----HhhCCCEEEEechhhhcc-ccccCCCCCH---H---HHHHHHHHHHHHHHHcCCEEEEEe
Confidence            7777666666666554    345799999999998873 3333323322   1   234456667778999999999999


Q ss_pred             ccccc
Q 024152          254 QVFSI  258 (271)
Q Consensus       254 ql~~~  258 (271)
                      |..+.
T Consensus       206 hvtk~  210 (446)
T PRK11823        206 HVTKE  210 (446)
T ss_pred             eccCC
Confidence            98764

>PRK05973 replicative DNA helicase; Provisional

Probab=99.85  E-value=9.5e-21  Score=162.60  Aligned_cols=171  Identities=21%  Similarity=0.248  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152           69 LQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG  148 (271)
Q Consensus        69 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g  148 (271)
                      +.++++++-...|-.+|..+.....         -..-.|.++|  ||++|++++|+|+||+|||+|+++++.+.+.++.
T Consensus        25 ~~~~~~~~a~~~g~~~w~~~~~~~~---------~~~p~~~l~G--Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge   93 (237)
T PRK05973         25 LHEALDRIAAEEGFSSWSLLAAKAA---------ATTPAEELFS--QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR   93 (237)
T ss_pred             HHHHHHHHHHHhccchHHHHHHhcc---------CCCCHHHhcC--CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence            5567777777667666665542211         1122677776  9999999999999999999999999999988888


Q ss_pred             eEEEEcCCCCCCH--HHHHHcCCcCCcc---eec---CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccc
Q 024152          149 YCVFIDAEHALDP--SLAETIGVKTENL---LLA---QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMG  220 (271)
Q Consensus       149 ~v~~~~~e~~~~~--~~~~~~g~~~~~~---~~~---~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g  220 (271)
                      +|+||+.|++...  .....+|++.+++   ...   +..+.+++   ++++..+.+.++|||||++.+...        
T Consensus        94 ~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~i---i~~l~~~~~~~lVVIDsLq~l~~~--------  162 (237)
T PRK05973         94 TGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADYI---IARLASAPRGTLVVIDYLQLLDQR--------  162 (237)
T ss_pred             eEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHHH---HHHHHHhhCCCEEEEEcHHHHhhc--------
Confidence            9999999988654  3345567776543   111   12334443   344444567899999999988521        


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc--------cchhhhhh
Q 024152          221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI--------NLNKIIDE  266 (271)
Q Consensus       221 ~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~--------~~~~~l~~  266 (271)
                      .     ...++..+++.|+.+|++.|+|||+++|+...        |.+.++|.
T Consensus       163 ~-----~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR~  211 (237)
T PRK05973        163 R-----EKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDVRL  211 (237)
T ss_pred             c-----cchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhcCC
Confidence            0     01235566788999999999999999999843        56666654

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=99.85  E-value=1.5e-20  Score=162.67  Aligned_cols=144  Identities=22%  Similarity=0.297  Sum_probs=110.6

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc---
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN---  173 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~---  173 (271)
                      .++||++.||.+++ ||+++|.++.|.|+||+|||+|+++++...+..+.+++|++.|+....  ..++.+|++.+.   
T Consensus         2 ri~tGi~~LD~~l~-GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~   80 (237)
T TIGR03877         2 RVKTGIPGMDEILH-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEE   80 (237)
T ss_pred             ccccCcHhHHHHhc-CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhh
Confidence            48999999999998 999999999999999999999999999988777889999999887654  234456665432   


Q ss_pred             ---ceec-------------------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH
Q 024152          174 ---LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM  231 (271)
Q Consensus       174 ---~~~~-------------------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l  231 (271)
                         +.+.                   .+.+.++++..++....+.+.++++||+++.++...        .   .   ..
T Consensus        81 ~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~--------~---~---~~  146 (237)
T TIGR03877        81 EGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITK--------P---A---MA  146 (237)
T ss_pred             cCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCC--------h---H---HH
Confidence               1111                   223566777777777777789999999999875311        0   0   11


Q ss_pred             HHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          232 SQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       232 ~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      .+.+..|++++++.|+|+++++|...
T Consensus       147 r~~l~~l~~~lk~~~~t~llt~~~~~  172 (237)
T TIGR03877       147 RSIVMQLKRVLSGLGCTSIFVSQVSV  172 (237)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEECccc
Confidence            24567777778999999999999763

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=99.84  E-value=2.9e-20  Score=163.68  Aligned_cols=152  Identities=15%  Similarity=0.149  Sum_probs=115.5

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCHHH----HHHcCCcC
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGVKT  171 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~~~----~~~~g~~~  171 (271)
                      ..++|||++.||.+++  |+++|++++|.|+||+|||||+.+++.+++.. +.+|+|++.|+......    +...++..
T Consensus        10 ~~~~~tg~~~Ld~~~g--G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~   87 (271)
T cd01122          10 NEEVWWPFPVLNKLTK--GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRL   87 (271)
T ss_pred             ccCCCCCcceeeeeeE--EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCc
Confidence            4589999999999997  99999999999999999999999999998877 77999999998754322    22123322


Q ss_pred             C------------------------cceecC---CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhH
Q 024152          172 E------------------------NLLLAQ---PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHM  224 (271)
Q Consensus       172 ~------------------------~~~~~~---~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~  224 (271)
                      .                        .+.+.+   ..+.++++..++.+..++++++||||+++.+.....        ..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~--------~~  159 (271)
T cd01122          88 HLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER--------AS  159 (271)
T ss_pred             ccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC--------Cc
Confidence            1                        122222   225778888888887778999999999999863110        00


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          225 AMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       225 ~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      ......+..+++.|+.+|++++|||++++|+...
T Consensus       160 ~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~  193 (271)
T cd01122         160 GDERKALDEIMTKLRGFATEHGIHITLVSHLRRP  193 (271)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCc
Confidence            1223446678888999999999999999999853

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=99.83  E-value=1.4e-19  Score=153.38  Aligned_cols=144  Identities=29%  Similarity=0.428  Sum_probs=105.0

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHH-----cCCcCCcceecCCCC
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET-----IGVKTENLLLAQPDC  181 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~-----~g~~~~~~~~~~~~~  181 (271)
                      ||.+++ ||+++|.++.|.|+||+|||+|+++++.+.+..+++|+|+++|. +.......     .....+++.+.++.+
T Consensus         1 lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~   78 (209)
T TIGR02237         1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFD   78 (209)
T ss_pred             Chhhhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCC
Confidence            689999 99999999999999999999999999999988888999999986 43322111     122235666666666


Q ss_pred             HHHH---HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          182 GEQA---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       182 ~~e~---~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      ..+.   +..+..+....+++++|||++..++. .+..+.   .  ..+.+.+.+.+..|++++++.++++++++|....
T Consensus        79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~-~~~~~~---~--~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~  152 (209)
T TIGR02237        79 FDEQGVAIQKTSKFIDRDSASLVVVDSFTALYR-LELSDD---R--ISRNRELARQLTLLLSLARKKNLAVVITNQVYTD  152 (209)
T ss_pred             HHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhH-HHhCCc---c--HHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEe
Confidence            5554   44444445556899999999998762 222111   1  1234456667777888899999999999998753

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=99.83  E-value=1.6e-19  Score=155.09  Aligned_cols=143  Identities=23%  Similarity=0.292  Sum_probs=109.2

Q ss_pred             cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcc---
Q 024152          100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL---  174 (271)
Q Consensus       100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~---  174 (271)
                      ++||+++||.+++ ||+++|++++|.|+||+|||+|+.+++...+..+.+++|++.|+....  ..++.+|++++++   
T Consensus         2 i~tGi~~LD~~l~-GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~   80 (229)
T TIGR03881         2 LSTGVEGLDKLLE-GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEE   80 (229)
T ss_pred             cCCChhhHHHhhc-CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhc
Confidence            7899999999998 899999999999999999999999999877777778999999887654  2355677776532   


Q ss_pred             ---eec-------------CCCCHHHHHHHHHHHHhcC--CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHH
Q 024152          175 ---LLA-------------QPDCGEQALSLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR  236 (271)
Q Consensus       175 ---~~~-------------~~~~~~e~~~~~~~l~~~~--~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r  236 (271)
                         .+.             ...+.+++...++......  ++++++||+++.+.. .+    +      ..   ..+.+.
T Consensus        81 ~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~-~~----~------~~---~r~~~~  146 (229)
T TIGR03881        81 GKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWL-DK----P------AM---ARKYSY  146 (229)
T ss_pred             CCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhc-cC----h------HH---HHHHHH
Confidence               111             1245677888877776553  477999999998753 11    0      11   124566


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|++++++.|+|+++++|...
T Consensus       147 ~l~~~l~~~~~tvil~~~~~~  167 (229)
T TIGR03881       147 YLKRVLNRWNFTILLTSQYAI  167 (229)
T ss_pred             HHHHHHHhCCCEEEEEecccc
Confidence            777788999999999999653

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK04328 hypothetical protein; Provisional

Probab=99.83  E-value=1e-19  Score=158.51  Aligned_cols=145  Identities=23%  Similarity=0.288  Sum_probs=110.3

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcc-
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL-  174 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~-  174 (271)
                      +.++||++.||.+++ ||+++|.++.|.|+||+|||+|+++++...+..+.+++|++.|+....  ..++.+|++.+.+ 
T Consensus         3 ~rv~tGi~~LD~lL~-GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~   81 (249)
T PRK04328          3 KRVKTGIPGMDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYE   81 (249)
T ss_pred             ceecCCchhHHHHhc-CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHh
Confidence            568999999999999 999999999999999999999999999988878889999999887664  3345677754321 


Q ss_pred             -----eec-------------------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHH
Q 024152          175 -----LLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL  230 (271)
Q Consensus       175 -----~~~-------------------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~  230 (271)
                           .+.                   ++.+.++++..++....+.++++++||+++.++..        ..   ..   
T Consensus        82 ~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~--------~~---~~---  147 (249)
T PRK04328         82 EEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLT--------KP---AM---  147 (249)
T ss_pred             hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcC--------Ch---HH---
Confidence                 111                   12345566666777666778999999999987521        00   11   


Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          231 MSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       231 l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ..+.+..|.+.+++.|+|+++++|...
T Consensus       148 ~r~~~~~l~~~lk~~g~t~llt~e~~~  174 (249)
T PRK04328        148 ARSIVMQLKRVLSGLGCTAIFVSQVSV  174 (249)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEECccc
Confidence            124456677778899999999999863

>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.82  E-value=7.6e-21  Score=160.63  Aligned_cols=172  Identities=32%  Similarity=0.491  Sum_probs=140.0

Q ss_pred             CCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHH----HH
Q 024152           95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LA  164 (271)
Q Consensus        95 ~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~----~~  164 (271)
                      ..+..|.||..+||.++| ||++.=+++.|.|.||+|||.+..+++..++.      -+|+++|+++|.++..+    ++
T Consensus        92 ~~v~~ItTgs~~lD~ILG-GGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IA  170 (335)
T KOG1434|consen   92 KTVGSITTGSSALDDILG-GGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIA  170 (335)
T ss_pred             hccceeecchHHHhhhhc-CCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHH
Confidence            457789999999999999 99999999999999999999999999987763      35689999999998864    45


Q ss_pred             HHcCCcC----CcceecCCCCHHHHHHHH---HHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHH
Q 024152          165 ETIGVKT----ENLLLAQPDCGEQALSLV---DTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR  236 (271)
Q Consensus       165 ~~~g~~~----~~~~~~~~~~~~e~~~~~---~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r  236 (271)
                      .++++++    +++.+++..+.++.++.+   .....+ .+.++++||++..++ +.+++++ |+  ...|+|.+.+.+.
T Consensus       171 e~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~gr-ge--LseRqqkLn~ml~  246 (335)
T KOG1434|consen  171 ERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGR-GE--LSERQQKLNQMLQ  246 (335)
T ss_pred             HHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehhe-eeccccc-cc--HHHHHHHHHHHHH
Confidence            5666665    456666666666655544   334444 478999999999988 6777754 32  3467888999999


Q ss_pred             HHHHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152          237 KLSHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL  271 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~  271 (271)
                      .|.++++|++++|+++||+..++          .-|+.+++|+|+
T Consensus       247 kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHA  291 (335)
T KOG1434|consen  247 KLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHA  291 (335)
T ss_pred             HHHHHHHhccEEEEEecceecCCcccccccccccCccccchhhhh
Confidence            99999999999999999999765          558999999995

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=99.81  E-value=3.3e-19  Score=154.28  Aligned_cols=141  Identities=18%  Similarity=0.253  Sum_probs=108.3

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCHHH----HHHcCCcCCc-------
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGVKTEN-------  173 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~~~----~~~~g~~~~~-------  173 (271)
                      +||.+++  |+++|++++|+|+||+|||+|+++++.+.+.. +.+|+||+.|+......    +...+++...       
T Consensus         2 ~LD~~~~--Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~   79 (242)
T cd00984           2 DLDNLTG--GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLS   79 (242)
T ss_pred             chhhhhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence            6899997  99999999999999999999999999999887 77999999998765422    2334443221       


Q ss_pred             ------------------cee--cCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152          174 ------------------LLL--AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ  233 (271)
Q Consensus       174 ------------------~~~--~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~  233 (271)
                                        +.+  ....+.+++...++.+..++++++|||||++.+....  .   ..    ....++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~---~~----~~~~~~~~  150 (242)
T cd00984          80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--K---KG----NRQQEVAE  150 (242)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--C---CC----CHHHHHHH
Confidence                              111  1234678888888888777899999999999875311  0   01    22345678


Q ss_pred             HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      +++.|+.+|+++|+++++++|+..
T Consensus       151 ~~~~L~~la~~~~~~ii~~~q~~r  174 (242)
T cd00984         151 ISRSLKLLAKELNVPVIALSQLSR  174 (242)
T ss_pred             HHHHHHHHHHHhCCeEEEecccCh
Confidence            888999999999999999999874

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=99.79  E-value=8.4e-19  Score=150.46  Aligned_cols=142  Identities=32%  Similarity=0.447  Sum_probs=105.0

Q ss_pred             cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH--HHHHHcCCcCCc---
Q 024152          100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTEN---  173 (271)
Q Consensus       100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~--~~~~~~g~~~~~---  173 (271)
                      ++||++.||.+++ ||+|+|.++.|.|+||+|||+|+++++.+.+.+ +.+|+|++.+.+...  ..++.+|++...   
T Consensus         1 V~TGI~~LD~~l~-GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~   79 (226)
T PF06745_consen    1 VPTGIPGLDELLG-GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYED   79 (226)
T ss_dssp             E--SSTTHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHH
T ss_pred             CCCCchhHHHhhc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhh
Confidence            5899999999998 999999999999999999999999999998888 889999999887754  234456665432   


Q ss_pred             ---ceecC---------CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 024152          174 ---LLLAQ---------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS  241 (271)
Q Consensus       174 ---~~~~~---------~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~l  241 (271)
                         +.+.+         ..+.+++...+.....+.++++++||+++.+.. ..     ..       ..+...++.+...
T Consensus        80 ~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~~-----~~-------~~~r~~l~~l~~~  146 (226)
T PF06745_consen   80 SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-YD-----DP-------EELRRFLRALIKF  146 (226)
T ss_dssp             TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-SS-----SG-------GGHHHHHHHHHHH
T ss_pred             cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-cC-----CH-------HHHHHHHHHHHHH
Confidence               22221         345677777777777667789999999998831 11     11       1233567777777


Q ss_pred             HhhcCcEEEEEccc
Q 024152          242 LSLSQTILIFINQV  255 (271)
Q Consensus       242 ake~~~~Vi~~sql  255 (271)
                      +++.++++++++|.
T Consensus       147 l~~~~~t~llt~~~  160 (226)
T PF06745_consen  147 LKSRGVTTLLTSEM  160 (226)
T ss_dssp             HHHTTEEEEEEEEE
T ss_pred             HHHCCCEEEEEEcc
Confidence            89999999999995

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=99.76  E-value=6.7e-18  Score=160.10  Aligned_cols=146  Identities=21%  Similarity=0.239  Sum_probs=115.9

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc-
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN-  173 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~-  173 (271)
                      ...++||+++||.+++ ||+++|.++.|.|+||+|||||+++++.+.+.++.+++|++.|++..+  ..++.+|++.++ 
T Consensus       242 ~~~~~tGi~~lD~~lg-GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~  320 (484)
T TIGR02655       242 NVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEM  320 (484)
T ss_pred             ccccCCChHhHHHHhc-CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHH
Confidence            4579999999999999 999999999999999999999999999999998889999999998776  456778887654 


Q ss_pred             -----ceecC----CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 024152          174 -----LLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL  244 (271)
Q Consensus       174 -----~~~~~----~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake  244 (271)
                           +.+..    ....++.+..+...+.+.++++++||+++.+.. . +.    .       ....+.+..|.+.+|+
T Consensus       321 ~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~-~-~~----~-------~~~r~~~~~l~~~lk~  387 (484)
T TIGR02655       321 EQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR-G-VS----N-------NAFRQFVIGVTGYAKQ  387 (484)
T ss_pred             hhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH-h-cC----H-------HHHHHHHHHHHHHHhh
Confidence                 33322    234577777777777778899999999998862 1 11    0       1123445567777899


Q ss_pred             cCcEEEEEcccc
Q 024152          245 SQTILIFINQVF  256 (271)
Q Consensus       245 ~~~~Vi~~sql~  256 (271)
                      .++|+++++...
T Consensus       388 ~~it~~~t~~~~  399 (484)
T TIGR02655       388 EEITGFFTNTSD  399 (484)
T ss_pred             CCCeEEEeeccc
Confidence            999999997654

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.76  E-value=1.6e-17  Score=143.25  Aligned_cols=146  Identities=21%  Similarity=0.328  Sum_probs=106.4

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHH--HHHHcCCcCCc
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTEN  173 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~--~~~~~g~~~~~  173 (271)
                      ..+.++||++.||.+++ ||+++|.++.|.|+||+|||+|+.+++...+..+++|+|++.|......  .+..+|++..+
T Consensus         3 ~~~~~~tGi~~LD~~l~-gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~   81 (234)
T PRK06067          3 KKEIISTGNEELDRKLG-GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISD   81 (234)
T ss_pred             CceEEecCCHHHHHhhC-CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhH
Confidence            45679999999999999 9999999999999999999999999998888888899999998776542  23456766543


Q ss_pred             c------eec---------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          174 L------LLA---------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       174 ~------~~~---------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      .      .+.         .....++++..+.....+.++++++||++..+....      ..       ..+.+.++.+
T Consensus        82 ~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~------~~-------~~~~~~l~~l  148 (234)
T PRK06067         82 FFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA------EE-------DDILNFLTEA  148 (234)
T ss_pred             HHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC------CH-------HHHHHHHHHH
Confidence            2      111         112335677777777766789999999999764200      00       1233444444


Q ss_pred             HHHHhhcCcEEEEEcccc
Q 024152          239 SHSLSLSQTILIFINQVF  256 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~  256 (271)
                      +.+ ++.++++++++|..
T Consensus       149 ~~l-~~~g~tvllt~~~~  165 (234)
T PRK06067        149 KNL-VDLGKTILITLHPY  165 (234)
T ss_pred             HHH-HhCCCEEEEEecCC
Confidence            433 34688999998864

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=99.75  E-value=1.1e-17  Score=159.77  Aligned_cols=149  Identities=22%  Similarity=0.296  Sum_probs=111.6

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH--HHHHHcCCcCC
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTE  172 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~--~~~~~~g~~~~  172 (271)
                      .++++|||+++||.+++ ||+++|++++|.|+||+|||+|+++++.+.+.. +.+|+|++.|+...+  ..+..+|++..
T Consensus         9 ~~~ri~TGI~~LD~~l~-GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~   87 (509)
T PRK09302          9 GIEKLPTGIEGFDDITH-GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQ   87 (509)
T ss_pred             CCccccCCchhHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHH
Confidence            67899999999999998 899999999999999999999999999988877 778999999988765  33455777654


Q ss_pred             cce------ecC------------CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHH
Q 024152          173 NLL------LAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA  234 (271)
Q Consensus       173 ~~~------~~~------------~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~  234 (271)
                      .+.      +..            ..+.++++..+.....+.+++.++||+++.+...  +      ..    ...+...
T Consensus        88 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~--~------d~----~~~~r~~  155 (509)
T PRK09302         88 KLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSG--F------SN----EAVVRRE  155 (509)
T ss_pred             HHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhh--c------cC----HHHHHHH
Confidence            321      111            1234566666777777778999999999976521  0      00    0122344


Q ss_pred             HHHHHHHHhhcCcEEEEEccccc
Q 024152          235 LRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       235 ~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      +..|.+.+++.++|+++++|...
T Consensus       156 l~~L~~~Lk~~g~TvLlt~~~~~  178 (509)
T PRK09302        156 LRRLFAWLKQKGVTAVITGERGD  178 (509)
T ss_pred             HHHHHHHHHhCCCEEEEEECCcc
Confidence            55566667889999999998653

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=99.74  E-value=4.2e-17  Score=139.77  Aligned_cols=142  Identities=25%  Similarity=0.371  Sum_probs=100.5

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc-----ce
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN-----LL  175 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~-----~~  175 (271)
                      |++.||.+++ ||+++|++++|.|+||+|||+|+.+++.+....+++|+|++.|++..+  ..+..++++.+.     +.
T Consensus         1 Gi~~LD~~l~-gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~   79 (224)
T TIGR03880         1 GIPGLDEMLG-GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLY   79 (224)
T ss_pred             CchhhHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeE
Confidence            6889999998 899999999999999999999999999998888889999999987765  334556765543     22


Q ss_pred             ecCCC------CHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEE
Q 024152          176 LAQPD------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTIL  249 (271)
Q Consensus       176 ~~~~~------~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~V  249 (271)
                      +.+..      ...++...++.++.+.++++++||+++.+.+  ....   .   ....+.+...++.    +++.|+|+
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~--~~~~---~---~~~r~~l~~l~~~----lk~~~~tv  147 (224)
T TIGR03880        80 IVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLET--LFDD---D---AERRTELFRFYSS----LRETGVTT  147 (224)
T ss_pred             EEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhh--hcCC---H---HHHHHHHHHHHHH----HHhCCCEE
Confidence            22211      1234445556666677899999999998732  1111   0   1122233333333    46789999


Q ss_pred             EEEccccc
Q 024152          250 IFINQVFS  257 (271)
Q Consensus       250 i~~sql~~  257 (271)
                      ++++|...
T Consensus       148 ll~s~~~~  155 (224)
T TIGR03880       148 ILTSEADK  155 (224)
T ss_pred             EEEEcccC
Confidence            99999753

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=99.72  E-value=4.5e-17  Score=154.47  Aligned_cols=146  Identities=18%  Similarity=0.236  Sum_probs=104.7

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH--HHHHHcCCcCCcc-
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTENL-  174 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~--~~~~~~g~~~~~~-  174 (271)
                      .++||++.||.+++ |||++|.++.|.|+||+|||||+++++.+.+.+ +.+++|++.|+....  ..++.+|++++.+ 
T Consensus         2 r~~TGI~gLD~il~-GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~   80 (484)
T TIGR02655         2 KIRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLV   80 (484)
T ss_pred             cCCCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHh
Confidence            47999999999999 999999999999999999999999999887766 678999999877654  4466788877643 


Q ss_pred             -----eecC------------CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHH
Q 024152          175 -----LLAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK  237 (271)
Q Consensus       175 -----~~~~------------~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~  237 (271)
                           .+.+            ....++++......+.....+.++||++..+....+      .  ...    ..+.+..
T Consensus        81 ~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~------~--~~~----~r~~l~~  148 (484)
T TIGR02655        81 DEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD------A--VSV----VRREIFR  148 (484)
T ss_pred             hcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC------c--hHH----HHHHHHH
Confidence                 2211            123445555555566678899999999887642111      0  001    1122233


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      +.+.+++.++|+++++|...
T Consensus       149 Li~~L~~~g~TvLLtsh~~~  168 (484)
T TIGR02655       149 LVARLKQIGVTTVMTTERIE  168 (484)
T ss_pred             HHHHHHHCCCEEEEEecCcc
Confidence            33344678999999999754

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=99.72  E-value=7e-17  Score=154.27  Aligned_cols=148  Identities=24%  Similarity=0.328  Sum_probs=114.9

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN  173 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~  173 (271)
                      ....++||+++||.+++ ||+++|.+++|.|+||+|||+|+.+++...+..+.+++|++.|+....  ..+..+|++.+.
T Consensus       251 ~~~~~~tGi~~lD~~l~-GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~  329 (509)
T PRK09302        251 SNERISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEK  329 (509)
T ss_pred             ccccccCCcHHHHHhhc-CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHH
Confidence            34579999999999998 999999999999999999999999999999888889999999887654  335567776543


Q ss_pred             c------eec----CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 024152          174 L------LLA----QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS  243 (271)
Q Consensus       174 ~------~~~----~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lak  243 (271)
                      +      .+.    .....++.+..+.....+.+++++|||+++.+....       .      ...+.+.++.|..+++
T Consensus       330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~------~~~~~~~l~~l~~~~k  396 (509)
T PRK09302        330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG-------S------LNEFRQFVIRLTDYLK  396 (509)
T ss_pred             HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------C------HHHHHHHHHHHHHHHH
Confidence            2      111    122346667777777777889999999999875211       1      1234566777888899


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      +.|+++++++|...
T Consensus       397 ~~~~t~l~t~~~~~  410 (509)
T PRK09302        397 SEEITGLFTNLTPD  410 (509)
T ss_pred             hCCCeEEEEecccc
Confidence            99999999998654

>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]

Probab=99.71  E-value=4.4e-17  Score=139.77  Aligned_cols=157  Identities=28%  Similarity=0.381  Sum_probs=114.7

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHHH-HHHcCCc
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPSL-AETIGVK  170 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~~-~~~~g~~  170 (271)
                      ..++||...||..++ ||++.+.+++|+|++|+|||.|+++++..++-      -++.++|+.+|..+...+ .+-..+.
T Consensus        82 ~~lttgc~~LD~~L~-GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~  160 (351)
T KOG1564|consen   82 SKLTTGCVALDECLR-GGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTL  160 (351)
T ss_pred             hhcccccHHHHHHhc-CCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhc
Confidence            459999999999999 99999999999999999999999999987762      245789999998876422 1111111


Q ss_pred             C----------------CcceecCCCCHHHHHHHHHH----HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHH
Q 024152          171 T----------------ENLLLAQPDCGEQALSLVDT----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL  230 (271)
Q Consensus       171 ~----------------~~~~~~~~~~~~e~~~~~~~----l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~  230 (271)
                      +                +.+++....+++.+.+.+..    +..++++++||||++...+ +.++.-.+.+.+  .+++.
T Consensus       161 ~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~--~r~~~  237 (351)
T KOG1564|consen  161 PQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLK--KRARH  237 (351)
T ss_pred             ccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHH-HHHhccChhhhh--hHHHH
Confidence            1                12445555666666666544    3456779999999999888 555543222221  34455


Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          231 MSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       231 l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      +-+....|..+|.+++++|+++||+.+.
T Consensus       238 l~rla~~Lr~LA~~~~~aVV~~NQVtd~  265 (351)
T KOG1564|consen  238 LFRLAGKLRQLASKFDLAVVCANQVTDR  265 (351)
T ss_pred             HHHHHHHHHHHHHhcCccEEEeeccccc
Confidence            5566666666699999999999999987

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.69  E-value=1.6e-17  Score=149.50  Aligned_cols=146  Identities=21%  Similarity=0.265  Sum_probs=111.7

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHH
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      ..+|.+--  -+++|+++.|.||+||||||++++||+...+++|.| +++++.. .-+-..+.+|+++|++.+++++++.
T Consensus        19 ~av~~isl--~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I-~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~   95 (352)
T COG3842          19 TAVDDISL--DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI-LLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE   95 (352)
T ss_pred             eEEeccee--eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChhhcccceeecCcccCCCCcHH
Confidence            34444433  677999999999999999999999999999999984 5554433 3345677899999999999999999


Q ss_pred             HHHHHHHHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------
Q 024152          184 QALSLVDTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------  232 (271)
Q Consensus       184 e~~~~~~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------  232 (271)
                      +++++-.++...           .-++++-++.+...+| .++++  |++||+..+|+++                    
T Consensus        96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-~qLSG--GQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR  172 (352)
T COG3842          96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-HQLSG--GQQQRVALARALVPEPKVLLLDEPLSALDAKLR  172 (352)
T ss_pred             HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-hhhCh--HHHHHHHHHHHhhcCcchhhhcCcccchhHHHH
Confidence            998876552211           1234565666555553 55665  8999999999984                    


Q ss_pred             -HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 -QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 -~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                       +.-+.|+++.++.|+|.|+++|-.
T Consensus       173 ~~mr~Elk~lq~~~giT~i~VTHDq  197 (352)
T COG3842         173 EQMRKELKELQRELGITFVYVTHDQ  197 (352)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECCH
Confidence             334478889999999999999976

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=99.66  E-value=1.2e-15  Score=133.59  Aligned_cols=147  Identities=28%  Similarity=0.393  Sum_probs=109.1

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcc
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL  174 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~  174 (271)
                      +.++|||++.||.+++ ||+|+|.+++|.|+||+|||+|+.+++.+.+..+.+|+|++.++....  ..+..+|++++..
T Consensus         2 ~~~~~TGI~glD~~l~-GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~   80 (260)
T COG0467           2 MERIPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY   80 (260)
T ss_pred             CccccCCCcchHHHhc-CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH
Confidence            3578999999999999 999999999999999999999999999999999889999998877654  3344577776421


Q ss_pred             ------e---------------ecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152          175 ------L---------------LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ  233 (271)
Q Consensus       175 ------~---------------~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~  233 (271)
                            .               .....+.+.+...++......+...+++|++..+.-..      ...   .  . ...
T Consensus        81 ~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~------~~~---~--~-~r~  148 (260)
T COG0467          81 IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYL------NDP---A--L-VRR  148 (260)
T ss_pred             hhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhc------Cch---H--H-HHH
Confidence                  0               11123445566667777766779999999998543110      000   1  1 135


Q ss_pred             HHHHHHHHHhhcCcEEEEEcccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ....++++.++.+++.+++++..
T Consensus       149 ~~~~l~~~~~~~~~t~~~~~~~~  171 (260)
T COG0467         149 ILLLLKRFLKKLGVTSLLTTEAP  171 (260)
T ss_pred             HHHHHHHHHHhCCCEEEEEeccc
Confidence            56666777788889999998754

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.65  E-value=1.4e-16  Score=135.43  Aligned_cols=146  Identities=23%  Similarity=0.284  Sum_probs=111.0

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCCCCH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCG  182 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~  182 (271)
                      .+|.+.-  -+++|+++++.||+||||||++++|.+.+.+++|. ++++.+...+   ..+++.+||..|.+.+++++++
T Consensus        16 av~~v~l--~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~-I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv   92 (309)
T COG1125          16 AVDDVNL--TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE-ILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV   92 (309)
T ss_pred             eeeeeeE--EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce-EEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence            4444443  68899999999999999999999999999999998 5555554433   3788999999999999999999


Q ss_pred             HHHHHHHHHHHh----------cCCccEEEEcc--hhhhcCCCccCCccchhhHHHHHHHHHH-----------------
Q 024152          183 EQALSLVDTLIR----------SGSVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMSQ-----------------  233 (271)
Q Consensus       183 ~e~~~~~~~l~~----------~~~~~lvvID~--l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------------  233 (271)
                      .|+++.+-.+..          ..-++++-+|.  +...+| .++++  |++||+-.+|+++.                 
T Consensus        93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-~eLSG--GQQQRVGv~RALAadP~ilLMDEPFgALDpI  169 (309)
T COG1125          93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-HELSG--GQQQRVGVARALAADPPILLMDEPFGALDPI  169 (309)
T ss_pred             HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-hhcCc--chhhHHHHHHHHhcCCCeEeecCCccccChh
Confidence            999887665431          01134555553  233343 55665  99999999999843                 


Q ss_pred             ----HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 ----ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 ----~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                          .-..++++-++.+.|||+++|-.+
T Consensus       170 ~R~~lQ~e~~~lq~~l~kTivfVTHDid  197 (309)
T COG1125         170 TRKQLQEEIKELQKELGKTIVFVTHDID  197 (309)
T ss_pred             hHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence                223677788999999999999764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.65  E-value=3.4e-16  Score=132.82  Aligned_cols=148  Identities=19%  Similarity=0.155  Sum_probs=104.1

Q ss_pred             cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--C----CHHHHHHcCCcCCcceec
Q 024152          104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--L----DPSLAETIGVKTENLLLA  177 (271)
Q Consensus       104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~----~~~~~~~~g~~~~~~~~~  177 (271)
                      +..|+.+.-  -+++|++++|.||+|||||||++.+.+...|++|.|.+.+....  .    ...+.+.+|+.+|++.+.
T Consensus        18 ~~~L~~v~l--~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl   95 (226)
T COG1136          18 VEALKDVNL--EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL   95 (226)
T ss_pred             eEecccceE--EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence            334444443  68899999999999999999999999999998887665542211  1    125577899999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCC----------ccEEEEcchhh-hcCCCccCCccchhhHHHHHHHHH--------------
Q 024152          178 QPDCGEQALSLVDTLIRSGS----------VDVVVVDSVAA-LVPKGELDGEMGDAHMAMQARLMS--------------  232 (271)
Q Consensus       178 ~~~~~~e~~~~~~~l~~~~~----------~~lvvID~l~~-~~~~~~l~~~~g~~~~~~~~~~l~--------------  232 (271)
                      +..++.|++.+...+.....          ...+-+..... .+ ..++++  |++||+..+|++.              
T Consensus        96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-p~eLSG--GqqQRVAIARAL~~~P~iilADEPTgn  172 (226)
T COG1136          96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK-PSELSG--GQQQRVAIARALINNPKIILADEPTGN  172 (226)
T ss_pred             CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC-chhcCH--HHHHHHHHHHHHhcCCCeEEeeCcccc
Confidence            99999999886433211100          11112222222 22 245555  9999999999983              


Q ss_pred             -------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 -------QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 -------~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                             +.+..|..++++.|+|||+++|-.
T Consensus       173 LD~~t~~~V~~ll~~~~~~~g~tii~VTHd~  203 (226)
T COG1136         173 LDSKTAKEVLELLRELNKERGKTIIMVTHDP  203 (226)
T ss_pred             CChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence                   355567777888999999999955

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.63  E-value=1.5e-15  Score=124.10  Aligned_cols=150  Identities=23%  Similarity=0.294  Sum_probs=109.1

Q ss_pred             cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-----CHHHHHHcCCcCCccee
Q 024152          102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLL  176 (271)
Q Consensus       102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~  176 (271)
                      .|-+.|+.+.-  -+++|+++-|.||+|+|||||++.|.+...++.|.+.+++..-..     -+.+++++|+++|++++
T Consensus        13 ~g~~aL~~vs~--~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL   90 (223)
T COG2884          13 GGREALRDVSF--HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL   90 (223)
T ss_pred             CCchhhhCceE--eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccc
Confidence            35567777765  889999999999999999999999999999999997776543221     23788999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------
Q 024152          177 AQPDCGEQALSLVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------  232 (271)
Q Consensus       177 ~~~~~~~e~~~~~~~l~~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------  232 (271)
                      ....++.|+++++.+.....          -+++|-+-.-...+| .++++  |++||+..+|++.              
T Consensus        91 L~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-~~LSG--GEQQRvaIARAiV~~P~vLlADEPTGN  167 (223)
T COG2884          91 LPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-SQLSG--GEQQRVAIARAIVNQPAVLLADEPTGN  167 (223)
T ss_pred             cccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-cccCc--hHHHHHHHHHHHccCCCeEeecCCCCC
Confidence            99999999988765432110          123333322222332 45555  9999999999983              


Q ss_pred             -------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 -------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 -------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                             ++++.+ .-....|+||++.+|-..
T Consensus       168 LDp~~s~~im~lf-eeinr~GtTVl~ATHd~~  198 (223)
T COG2884         168 LDPDLSWEIMRLF-EEINRLGTTVLMATHDLE  198 (223)
T ss_pred             CChHHHHHHHHHH-HHHhhcCcEEEEEeccHH
Confidence                   233333 234568999999999663

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.63  E-value=3.6e-16  Score=130.20  Aligned_cols=137  Identities=22%  Similarity=0.308  Sum_probs=98.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC----HHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~  190 (271)
                      -+.+|+++.|+||+|||||||++++.+.-.+++|. ++++++....    ..+++.+|+++|++.++++.++-+++..+.
T Consensus        24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~-I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap  102 (240)
T COG1126          24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS-ITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP  102 (240)
T ss_pred             eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCce-EEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence            67799999999999999999999999999999998 5666543322    357888999999999999999988765532


Q ss_pred             HHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          191 TLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       191 ~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      .....           .-+..|-+-.-...|| ..+++  |++||+..+|+++                     +.+.-+
T Consensus       103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-~qLSG--GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm  179 (240)
T COG1126         103 VKVKKLSKAEAREKALELLEKVGLADKADAYP-AQLSG--GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM  179 (240)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-cccCc--HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHH
Confidence            21110           0122222222233443 45555  8999999999983                     455555


Q ss_pred             HHHHhhcCcEEEEEcccc
Q 024152          239 SHSLSLSQTILIFINQVF  256 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~  256 (271)
                      +.+| +.|.|.++++|-.
T Consensus       180 ~~LA-~eGmTMivVTHEM  196 (240)
T COG1126         180 KDLA-EEGMTMIIVTHEM  196 (240)
T ss_pred             HHHH-HcCCeEEEEechh
Confidence            5555 5679999999976

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=99.62  E-value=4.5e-16  Score=129.97  Aligned_cols=151  Identities=23%  Similarity=0.334  Sum_probs=84.2

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCeEEEEcCCCCCCHHH--
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDPSL--  163 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~----------~~g~v~~~~~e~~~~~~~--  163 (271)
                      ....++++++.+|.+++ |++++|+++.|+|+||+|||||+.+++..++.          .+++|+|++.|.......  
T Consensus        10 ~~~~~~~~~~~~~~li~-g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~r   88 (193)
T PF13481_consen   10 SFEDLDTGFPPLDWLID-GLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARR   88 (193)
T ss_dssp             ---HHHS------EEET-TEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHH
T ss_pred             hhhhccCCCCCcceeEC-CcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHH
Confidence            45678899999999999 88899999999999999999999999998875          456899999998854311  


Q ss_pred             HHHc--CCcC-C-----------cceecCCC----CHHHHHHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhH
Q 024152          164 AETI--GVKT-E-----------NLLLAQPD----CGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHM  224 (271)
Q Consensus       164 ~~~~--g~~~-~-----------~~~~~~~~----~~~e~~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~  224 (271)
                      ...+  .+.. +           .+.+....    .....+..+.+.... +++++||||+++.+.+..       .   
T Consensus        89 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~-------~---  158 (193)
T PF13481_consen   89 LRALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGD-------E---  158 (193)
T ss_dssp             HHHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S--------T---
T ss_pred             HHHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCC-------C---
Confidence            1111  1110 0           11111111    123344444455545 679999999999987521       1   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          225 AMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       225 ~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                       +...+..+..+.|+++++++|++|+++.|.++.
T Consensus       159 -~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~  191 (193)
T PF13481_consen  159 -NSNSAVAQLMQELKRLAKEYGVAVILVHHTNKS  191 (193)
T ss_dssp             -T-HHHHHHHHHHHHHHHHHH--EEEEEEEE---
T ss_pred             -CCHHHHHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence             111223567777888899999999999998764

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.60  E-value=1.2e-15  Score=132.87  Aligned_cols=147  Identities=17%  Similarity=0.207  Sum_probs=110.6

Q ss_pred             cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC---CCCC-HHHHHHcCCcCCcceecCC
Q 024152          104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE---HALD-PSLAETIGVKTENLLLAQP  179 (271)
Q Consensus       104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e---~~~~-~~~~~~~g~~~~~~~~~~~  179 (271)
                      +..+|.+.-  -++.|+++++.|||||||||+++.||+...++.|.| +++.+   +... ....+++|+.+|++-++++
T Consensus        15 ~~a~~di~l--~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I-~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H   91 (345)
T COG1118          15 FGALDDISL--DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH   91 (345)
T ss_pred             cccccccee--eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE-EECCEeccchhccchhhcceeEEEechhhccc
Confidence            444554433  688999999999999999999999999999999984 45555   2222 3567889999999999999


Q ss_pred             CCHHHHHHHHHHHHh------------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152          180 DCGEQALSLVDTLIR------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------  232 (271)
Q Consensus       180 ~~~~e~~~~~~~l~~------------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------  232 (271)
                      +++.+++++..+..+            ..-++++-++.+...+| .++++  |++||+..+|+++               
T Consensus        92 mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-~QLSG--GQrQRVALARALA~eP~vLLLDEPf~AL  168 (345)
T COG1118          92 MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-AQLSG--GQRQRVALARALAVEPKVLLLDEPFGAL  168 (345)
T ss_pred             chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-hhcCh--HHHHHHHHHHHhhcCCCeEeecCCchhh
Confidence            999999988553221            11155666777777775 55665  8999999999983               


Q ss_pred             ------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 ------QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 ------~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                            +.=+.|.++.++.++++++++|-.
T Consensus       169 Da~vr~~lr~wLr~~~~~~~~ttvfVTHD~  198 (345)
T COG1118         169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQ  198 (345)
T ss_pred             hHHHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence                  222245556777899999999976

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.59  E-value=2e-15  Score=135.24  Aligned_cols=139  Identities=18%  Similarity=0.237  Sum_probs=108.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+..|++++|.||||||||||++.||+...+++|. ++|+++.... +-..+.+++++|++.+++++++.+++++..+..
T Consensus        25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~-I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~  103 (338)
T COG3839          25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE-ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR  103 (338)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence            46699999999999999999999999999999998 5565543332 455678999999999999999999998865542


Q ss_pred             h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHH
Q 024152          194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSL  242 (271)
Q Consensus       194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~la  242 (271)
                      .          +.-.+++-|+.+....| .++++  |++||+..+|++..                     .-..++++-
T Consensus       104 ~~~k~ei~~rV~eva~~L~l~~lL~r~P-~~LSG--GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh  180 (338)
T COG3839         104 GVPKAEIDKRVKEVAKLLGLEHLLNRKP-LQLSG--GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH  180 (338)
T ss_pred             CCchHHHHHHHHHHHHHcCChhHHhcCc-ccCCh--hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH
Confidence            1          01234566776666653 55665  89999999999842                     222677778


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      +++++|+|.++|-..
T Consensus       181 ~~l~~T~IYVTHDq~  195 (338)
T COG3839         181 ERLGTTTIYVTHDQV  195 (338)
T ss_pred             HhcCCcEEEEcCCHH
Confidence            899999999999763

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.57  E-value=5.7e-15  Score=128.96  Aligned_cols=150  Identities=19%  Similarity=0.200  Sum_probs=112.7

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---C--CHHHHHHcCCcCCcceec
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---L--DPSLAETIGVKTENLLLA  177 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~--~~~~~~~~g~~~~~~~~~  177 (271)
                      .+..||.+.-  -+++|++++|+|++|+|||||.+++...-.|++|+|++.+.+-.   .  -+..++.+|+.||++.+.
T Consensus        18 ~~~al~~vsL--~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL   95 (339)
T COG1135          18 TVTALDDVSL--EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL   95 (339)
T ss_pred             ceeeeccceE--EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence            4566676655  78899999999999999999999999999999999665552211   1  135678899999999999


Q ss_pred             CCCCHHHHHHHHHHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152          178 QPDCGEQALSLVDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------  232 (271)
Q Consensus       178 ~~~~~~e~~~~~~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------  232 (271)
                      ...|+.+++++..++...          .-+++|-+..-...+| .++++  |++||+..+|+++               
T Consensus        96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-~qLSG--GQKQRVaIARALa~~P~iLL~DEaTSAL  172 (339)
T COG1135          96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-AQLSG--GQKQRVAIARALANNPKILLCDEATSAL  172 (339)
T ss_pred             ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-hhcCc--chhhHHHHHHHHhcCCCEEEecCccccC
Confidence            989999998876543211          1133443433333342 44554  9999999999983               


Q ss_pred             ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 ------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                            .++..|+.+-+++|.||++++|-++
T Consensus       173 DP~TT~sIL~LL~~In~~lglTIvlITHEm~  203 (339)
T COG1135         173 DPETTQSILELLKDINRELGLTIVLITHEME  203 (339)
T ss_pred             ChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence                  5677888889999999999999774

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.57  E-value=2.7e-14  Score=122.98  Aligned_cols=145  Identities=17%  Similarity=0.277  Sum_probs=94.4

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHH--HHHHcCCcCCcc-
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTENL-  174 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~--~~~~~g~~~~~~-  174 (271)
                      -.+.+++++||.+++ ||+++|++++|.|+||+|||||+.+++....+.+.+++|++.+......  .++.+|++.+.. 
T Consensus         4 ~~~~~~~~~ld~~l~-ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~   82 (230)
T PRK08533          4 AKIELSRDELHKRLG-GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKL   82 (230)
T ss_pred             EEEEEEEeeeehhhC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHh
Confidence            457789999999999 9999999999999999999999999988887777789999988766542  234567765432 


Q ss_pred             -----eec---CC-CCH---HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024152          175 -----LLA---QP-DCG---EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL  242 (271)
Q Consensus       175 -----~~~---~~-~~~---~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~la  242 (271)
                           ...   +. ...   +..+..+.......+++++++|+++.... ..     .+.   ...+.+.+.++.+    
T Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~-~~-----~d~---~~~~~l~~~l~~l----  149 (230)
T PRK08533         83 ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS-ND-----ASE---VAVNDLMAFFKRI----  149 (230)
T ss_pred             hcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc-CC-----cch---HHHHHHHHHHHHH----
Confidence                 111   11 112   22222222233345789999999987652 10     010   1113333333333    


Q ss_pred             hhcCcEEEEEcccc
Q 024152          243 SLSQTILIFINQVF  256 (271)
Q Consensus       243 ke~~~~Vi~~sql~  256 (271)
                      ++.+++++++++..
T Consensus       150 ~~~g~tvi~t~~~~  163 (230)
T PRK08533        150 SSLNKVIILTANPK  163 (230)
T ss_pred             HhCCCEEEEEeccc
Confidence            34577887776644

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.54  E-value=4e-15  Score=126.83  Aligned_cols=137  Identities=18%  Similarity=0.188  Sum_probs=100.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH-
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI-  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~-  193 (271)
                      -+++||++.|.||+|||||||++.+++...+..|.|.+.+.+ ..  ......++.+|+..+++..|+.+++.+..... 
T Consensus        25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~-v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~  101 (248)
T COG1116          25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP-VT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG  101 (248)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc-cC--CCCCCEEEEeccCcccchhhHHhhheehhhccc
Confidence            566999999999999999999999999999999986654433 22  12345789999999998889888876543321 


Q ss_pred             ---------hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHHh
Q 024152          194 ---------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSLS  243 (271)
Q Consensus       194 ---------~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~lak  243 (271)
                               ...-+..+-+......+| .++|+  |++||+..+|+++.                     .-..|.++++
T Consensus       102 ~~~~e~~~~a~~~L~~VgL~~~~~~~P-~qLSG--GMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~  178 (248)
T COG1116         102 KSKAEARERAKELLELVGLAGFEDKYP-HQLSG--GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE  178 (248)
T ss_pred             cchHhHHHHHHHHHHHcCCcchhhcCc-cccCh--HHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH
Confidence                     111233444444445553 56665  99999999999842                     2236677899


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      +.+.||++++|--+
T Consensus       179 ~~~~TvllVTHdi~  192 (248)
T COG1116         179 ETRKTVLLVTHDVD  192 (248)
T ss_pred             hhCCEEEEEeCCHH
Confidence            99999999999653

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.53  E-value=4.6e-15  Score=128.30  Aligned_cols=138  Identities=18%  Similarity=0.240  Sum_probs=96.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      .+++|++++|.||||||||||++++++...+.+|.|. +++...   ..+.+++.++|.+|........++.|++..-|.
T Consensus        24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~-l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~  102 (258)
T COG1120          24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL-LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY  102 (258)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-ECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence            6889999999999999999999999999999999854 554432   335889999999998766666666666554432


Q ss_pred             HHhc-------C-------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          192 LIRS-------G-------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       192 l~~~-------~-------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      -...       .       .+..+-+..+.... -.++++  |++|++..+++++                     +.+.
T Consensus       103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~  179 (258)
T COG1120         103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-VDELSG--GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE  179 (258)
T ss_pred             cccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-ccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHH
Confidence            1100       0       01111122222111 234444  8899998888884                     4566


Q ss_pred             HHHHHHhhcCcEEEEEcccc
Q 024152          237 KLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~  256 (271)
                      .++++.++.|.|||++.|--
T Consensus       180 ll~~l~~~~~~tvv~vlHDl  199 (258)
T COG1120         180 LLRDLNREKGLTVVMVLHDL  199 (258)
T ss_pred             HHHHHHHhcCCEEEEEecCH
Confidence            77788889999999999943

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.51  E-value=2.5e-14  Score=123.26  Aligned_cols=138  Identities=17%  Similarity=0.220  Sum_probs=92.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc--eecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL--LLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~--~~~~~~~~~e~~~~~~~l  192 (271)
                      -+++|++++|+||||+|||||++.+++.+.|..|.|.+++...... .-..++||+||+.  ....+.++.|++...+..
T Consensus        26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~-~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~  104 (254)
T COG1121          26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR-RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG  104 (254)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc-ccCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence            6779999999999999999999999999999999977665432222 1135789999965  344567888887653211


Q ss_pred             H----h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          193 I----R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       193 ~----~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      .    .          ...++.|-+-.+... +-.++|+  |+.||+..+|+++                     .+.+-
T Consensus       105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i~~LSG--GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l  181 (254)
T COG1121         105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QIGELSG--GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL  181 (254)
T ss_pred             cccccccccHHHHHHHHHHHHHcCchhhhCC-cccccCc--HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH
Confidence            0    0          001111111111111 1234444  8999999999883                     35556


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |+++.++ |++|++++|--.
T Consensus       182 L~~l~~e-g~tIl~vtHDL~  200 (254)
T COG1121         182 LKELRQE-GKTVLMVTHDLG  200 (254)
T ss_pred             HHHHHHC-CCEEEEEeCCcH
Confidence            6666666 999999999653

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.50  E-value=4.5e-14  Score=125.79  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=103.5

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      .|+.+..  -+++|++++|.||||+|||||++.+++...+.+|.|.+++..... .....+.+||.+|...+++.+|+.|
T Consensus        20 ~l~~vs~--~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e   97 (293)
T COG1131          20 ALDGVSF--EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE   97 (293)
T ss_pred             EEeceeE--EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHH
Confidence            3444433  678999999999999999999999999999999997766544333 2467788999999999999999999


Q ss_pred             HHHHHHHHHhcCC-ccEEEEcchhhhcC--------CCccCCccchhhHHHHHHHHH---------------------HH
Q 024152          185 ALSLVDTLIRSGS-VDVVVVDSVAALVP--------KGELDGEMGDAHMAMQARLMS---------------------QA  234 (271)
Q Consensus       185 ~~~~~~~l~~~~~-~~lvvID~l~~~~~--------~~~l~~~~g~~~~~~~~~~l~---------------------~~  234 (271)
                      ++.+...+..... ...-.++.+.....        -..++  .|++||...+.++.                     .+
T Consensus        98 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS--~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~  175 (293)
T COG1131          98 NLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLS--GGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI  175 (293)
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcC--HHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence            9988776653211 01111222221111        11233  37888888887772                     34


Q ss_pred             HHHHHHHHhhcCcEEEEEcccccc
Q 024152          235 LRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       235 ~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      ...|+.++++.+++|+++||....
T Consensus       176 ~~~l~~l~~~g~~tvlissH~l~e  199 (293)
T COG1131         176 WELLRELAKEGGVTILLSTHILEE  199 (293)
T ss_pred             HHHHHHHHhCCCcEEEEeCCcHHH
Confidence            445555666677999999998754

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.49  E-value=9.1e-14  Score=117.00  Aligned_cols=143  Identities=17%  Similarity=0.198  Sum_probs=100.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      .+++|++++|.|+||+|||||+++|++...+.+|.|.|-+.+-.   ..+..+..+++.+|.-.+++.+|++|++.....
T Consensus        25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~  104 (237)
T COG0410          25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY  104 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence            56799999999999999999999999999999998665443221   122445557889999999999999999876543


Q ss_pred             HHhcCCccEEEEcchhhhcCC-----Ccc--CCccchhhHHHHHHHH---------------------HHHHHHHHHHHh
Q 024152          192 LIRSGSVDVVVVDSVAALVPK-----GEL--DGEMGDAHMAMQARLM---------------------SQALRKLSHSLS  243 (271)
Q Consensus       192 l~~~~~~~lvvID~l~~~~~~-----~~l--~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lak  243 (271)
                      .........-.+|.+-.++|+     ...  .-+.|++|+...+|++                     .++.+.++.+.+
T Consensus       105 ~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~  184 (237)
T COG0410         105 ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK  184 (237)
T ss_pred             cccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHH
Confidence            322111222225555555551     111  1133788888888887                     456667777777


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      +.+.+|+++-|...
T Consensus       185 ~~g~tIlLVEQn~~  198 (237)
T COG0410         185 EGGMTILLVEQNAR  198 (237)
T ss_pred             cCCcEEEEEeccHH
Confidence            88999999998764

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.49  E-value=5.1e-14  Score=119.10  Aligned_cols=140  Identities=17%  Similarity=0.196  Sum_probs=103.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CC---HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD---PSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~---~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|++|+|||||++.|.+...|++|.|.+++.+-.  ..   ..+.+++|+.+|.--++..+++.|++++.
T Consensus        30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp  109 (263)
T COG1127          30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP  109 (263)
T ss_pred             eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence            67899999999999999999999999999999999776664321  11   15677899999999999999999887763


Q ss_pred             HHHHh-----------cCCccEEEEcch-hhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          190 DTLIR-----------SGSVDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       190 ~~l~~-----------~~~~~lvvID~l-~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      -+...           ..++.+|-+..- ...+| .++++  |+.+|+..+|+++                     .+-.
T Consensus       110 lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-sELSG--GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~  186 (263)
T COG1127         110 LREHTKLPESLIRELVLMKLELVGLRGAAADLYP-SELSG--GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDE  186 (263)
T ss_pred             hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-hhhcc--hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHH
Confidence            32211           123444545444 44453 66766  8899999999983                     2333


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .++.+-+.++.|+++++|-..
T Consensus       187 LI~~L~~~lg~T~i~VTHDl~  207 (263)
T COG1127         187 LIRELNDALGLTVIMVTHDLD  207 (263)
T ss_pred             HHHHHHHhhCCEEEEEECChH
Confidence            445556779999999999763

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.49  E-value=6.2e-14  Score=113.97  Aligned_cols=141  Identities=20%  Similarity=0.247  Sum_probs=100.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHH----
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD----  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~----  190 (271)
                      -++.|++++|.||+|+|||||.+.||+...|.+|.+.+.+.+....+-..+=+.+.+|..+++.+.++++++.+-.    
T Consensus        21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L  100 (231)
T COG3840          21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL  100 (231)
T ss_pred             eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence            5789999999999999999999999999999999855544444444444455678889888888888887765311    


Q ss_pred             ------HHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHh
Q 024152          191 ------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLS  243 (271)
Q Consensus       191 ------~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lak  243 (271)
                            +...+.....+-+.......| .++++  |++||+..+|.+                     .+++..+..++.
T Consensus       101 kL~a~~r~~v~~aa~~vGl~~~~~RLP-~~LSG--GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~  177 (231)
T COG3840         101 KLNAEQREKVEAAAAQVGLAGFLKRLP-GELSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCD  177 (231)
T ss_pred             ccCHHHHHHHHHHHHHhChhhHhhhCc-cccCc--hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHH
Confidence                  111111122233333333332 45555  899999998886                     356667788899


Q ss_pred             hcCcEEEEEcccccc
Q 024152          244 LSQTILIFINQVFSI  258 (271)
Q Consensus       244 e~~~~Vi~~sql~~~  258 (271)
                      |.+.|+++++|.-++
T Consensus       178 E~~~TllmVTH~~~D  192 (231)
T COG3840         178 ERKMTLLMVTHHPED  192 (231)
T ss_pred             hhCCEEEEEeCCHHH
Confidence            999999999997643

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=7.8e-14  Score=127.43  Aligned_cols=139  Identities=15%  Similarity=0.193  Sum_probs=97.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...+..|.|. ++.+.... ....+.+++.+|+..+++.+++.+++.+..+..
T Consensus        26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~-~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~  104 (356)
T PRK11650         26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW-IGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR  104 (356)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE-ECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence            5679999999999999999999999999999999855 44432221 223467999999999998899999887653321


Q ss_pred             h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .          ..-++.+-++.+....+ .++++  |++||+..++++.                     .....|+++.
T Consensus       105 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~LSg--Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~  181 (356)
T PRK11650        105 GMPKAEIEERVAEAARILELEPLLDRKP-RELSG--GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH  181 (356)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            0          00122222333322221 33444  8999999999883                     3444666667


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.++|+|+++|-..
T Consensus       182 ~~~g~tii~vTHd~~  196 (356)
T PRK11650        182 RRLKTTSLYVTHDQV  196 (356)
T ss_pred             HhcCCEEEEEeCCHH
Confidence            778999999999653

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.45  E-value=1.4e-12  Score=108.59  Aligned_cols=144  Identities=20%  Similarity=0.307  Sum_probs=103.8

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH--HHHcCCcCCc---
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL--AETIGVKTEN---  173 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~--~~~~g~~~~~---  173 (271)
                      -+++|-++||+.+| ||+|-|+++.|-|++|+|||.|+.+++.-...++..+.|+++|.+....+  +..++++..+   
T Consensus         9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l   87 (235)
T COG2874           9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLL   87 (235)
T ss_pred             hccCCcHHHHhhcc-CCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHh
Confidence            48899999999999 99999999999999999999999999999999999999999998876533  3345555432   


Q ss_pred             ---ceecC------CCCH---HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 024152          174 ---LLLAQ------PDCG---EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS  241 (271)
Q Consensus       174 ---~~~~~------~~~~---~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~l  241 (271)
                         +.+++      ..+.   ..++..+-...+..+.++++||++......+       +      .+++.+++..++.+
T Consensus        88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~------~~~vl~fm~~~r~l  154 (235)
T COG2874          88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------S------EDAVLNFMTFLRKL  154 (235)
T ss_pred             cceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------c------HHHHHHHHHHHHHH
Confidence               22221      1112   2344444444455678999999998775311       0      13455666666655


Q ss_pred             HhhcCcEEEEEccccc
Q 024152          242 LSLSQTILIFINQVFS  257 (271)
Q Consensus       242 ake~~~~Vi~~sql~~  257 (271)
                      + ..|.+|+++.|...
T Consensus       155 ~-d~gKvIilTvhp~~  169 (235)
T COG2874         155 S-DLGKVIILTVHPSA  169 (235)
T ss_pred             H-hCCCEEEEEeChhh
Confidence            4 57888998888663

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.45  E-value=7.8e-14  Score=114.74  Aligned_cols=137  Identities=17%  Similarity=0.254  Sum_probs=92.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      -+|+|.++.|.||||+|||||+-.++.....+.|.|.+-+.+  ....+.+++.+.+.-|...+....++++++.+-|.-
T Consensus        23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfP  102 (252)
T COG4604          23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFP  102 (252)
T ss_pred             eecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCc
Confidence            788999999999999999999999999999999985554433  334467888888887776666666777776665443


Q ss_pred             HhcCCc------------cEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHH
Q 024152          193 IRSGSV------------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLS  239 (271)
Q Consensus       193 ~~~~~~------------~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~  239 (271)
                      +.++.+            +..-+..|...+ .+++++  |++||...+..+                     .++.+.|+
T Consensus       103 YSqGRlt~eD~~~I~~aieyl~L~~l~dry-Ld~LSG--GQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lr  179 (252)
T COG4604         103 YSQGRLTKEDRRIINEAIEYLHLEDLSDRY-LDELSG--GQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR  179 (252)
T ss_pred             ccCCCCchHHHHHHHHHHHHhcccchHHHh-HHhccc--chhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHH
Confidence            322221            111111122222 233333  566655444433                     35677788


Q ss_pred             HHHhhcCcEEEEEcc
Q 024152          240 HSLSLSQTILIFINQ  254 (271)
Q Consensus       240 ~lake~~~~Vi~~sq  254 (271)
                      ++++|+|.||+++-|
T Consensus       180 rla~el~KtiviVlH  194 (252)
T COG4604         180 RLADELGKTIVVVLH  194 (252)
T ss_pred             HHHHHhCCeEEEEEe
Confidence            889999999999877

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.44  E-value=1.6e-13  Score=125.28  Aligned_cols=139  Identities=16%  Similarity=0.160  Sum_probs=97.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...++.|.|. ++++.... ....+.+++.+|+..+++.+++.+++.+..+..
T Consensus        26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~-i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~  104 (353)
T TIGR03265        26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY-QGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR  104 (353)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE-ECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence            5669999999999999999999999999999999855 44433221 233567999999999999999999887653321


Q ss_pred             h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .          ..-++.+-++.+.... ..+++  .|++|++..++++.                     +....|+++.
T Consensus       105 ~~~~~~~~~~~~~~l~~l~L~~~~~~~-~~~LS--gGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~  181 (353)
T TIGR03265       105 GMGRAEVAERVAELLDLVGLPGSERKY-PGQLS--GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ  181 (353)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCchhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            0          0012222233322222 12333  38999999999883                     3344566667


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.++|+|+++|-..
T Consensus       182 ~~~~~tvi~vTHd~~  196 (353)
T TIGR03265       182 RRLGVTTIMVTHDQE  196 (353)
T ss_pred             HhcCCEEEEEcCCHH
Confidence            778999999999774

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]

Probab=99.44  E-value=9.9e-13  Score=117.23  Aligned_cols=158  Identities=29%  Similarity=0.463  Sum_probs=109.1

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH----HHHHHcCCcC
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKT  171 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~----~~~~~~g~~~  171 (271)
                      ....++||..+||..++ ||++.|.+++|+||||+|||.|+++++....-.++.++|++.+..+..    .++.+.+...
T Consensus        89 ~~~~l~Tg~~~lD~lL~-gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~  167 (326)
T KOG1433|consen   89 ELGFLSTGSKALDKLLG-GGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLRG  167 (326)
T ss_pred             cceeeccchhhhhHhhc-cCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhhhhh
Confidence            44569999999999999 999999999999999999999998888877444568999998875432    2333333322


Q ss_pred             C----cceecCCCCHHH---HHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 024152          172 E----NLLLAQPDCGEQ---ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL  244 (271)
Q Consensus       172 ~----~~~~~~~~~~~e---~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake  244 (271)
                      .    ++-+....+.++   ....+.....+....++++|+....+ +.++.+ .++  -..++.-++...+.|++++++
T Consensus       168 ~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~-~~~~~g-~~~--~~a~~~~~~~~~~~l~~la~~  243 (326)
T KOG1433|consen  168 RDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALY-RTTFKG-RGE--LSARQMLLAKFLRSLKKLADE  243 (326)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccc-cccccc-ccc--hHHHHHHHHHHHHHHHHHHHh
Confidence            2    111111111121   11122223344567889999988877 455544 222  224556678888999999999


Q ss_pred             cCcEEEEEcccccc
Q 024152          245 SQTILIFINQVFSI  258 (271)
Q Consensus       245 ~~~~Vi~~sql~~~  258 (271)
                      .+.+||+.||+...
T Consensus       244 ~g~~vvitn~v~~~  257 (326)
T KOG1433|consen  244 FGVAVVITNQVTAQ  257 (326)
T ss_pred             cCceEEEecccccc
Confidence            99999999998854

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.43  E-value=2e-13  Score=125.50  Aligned_cols=139  Identities=15%  Similarity=0.197  Sum_probs=97.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...++.|.|. ++++... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus        36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~-~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~  114 (375)
T PRK09452         36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM-LDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ  114 (375)
T ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-ECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence            5779999999999999999999999999999999855 4443322 1233567899999999999999999887643211


Q ss_pred             h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .          ..-++++-++.+....+ ..++  .|++||+..++++.                     .+...|+++.
T Consensus       115 ~~~~~~~~~~~~~~l~~~~l~~~~~~~p-~~LS--gGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~  191 (375)
T PRK09452        115 KTPAAEITPRVMEALRMVQLEEFAQRKP-HQLS--GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ  191 (375)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCCh-hhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence            0          00122222332222221 3344  38999999999883                     3444666667


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.++|+|+++|-..
T Consensus       192 ~~~g~tiI~vTHd~~  206 (375)
T PRK09452        192 RKLGITFVFVTHDQE  206 (375)
T ss_pred             HhcCCEEEEEeCCHH
Confidence            778999999999764

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=2.2e-13  Score=124.21  Aligned_cols=139  Identities=16%  Similarity=0.196  Sum_probs=96.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...++.|.+. ++.+.... ....+.+++.+|+..+++.+++.+++.+..+..
T Consensus        28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~  106 (351)
T PRK11432         28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF-IDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML  106 (351)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE-ECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc
Confidence            5679999999999999999999999999999999854 44432221 233467899999999998899998887643211


Q ss_pred             h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .          ..-++++-+..+.... ..++++  |++||+..+|++.                     +....|+.+.
T Consensus       107 ~~~~~~~~~~v~~~l~~~gl~~~~~r~-~~~LSg--Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  183 (351)
T PRK11432        107 GVPKEERKQRVKEALELVDLAGFEDRY-VDQISG--GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ  183 (351)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            0          0112222233322222 133443  8999999999983                     2334556666


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.++|+|+++|...
T Consensus       184 ~~~g~tii~vTHd~~  198 (351)
T PRK11432        184 QQFNITSLYVTHDQS  198 (351)
T ss_pred             HhcCCEEEEEcCCHH
Confidence            778999999999774

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.42  E-value=2.8e-13  Score=114.38  Aligned_cols=149  Identities=19%  Similarity=0.199  Sum_probs=102.3

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-----HHHHHHcCCcCCcceec
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLA  177 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-----~~~~~~~g~~~~~~~~~  177 (271)
                      |-..|+.+--  -+++||+++|.|++|+|||||++++.+...+..|.+.+.+.+....     +.+++.+|+.+|.+.+.
T Consensus        16 ~~~aL~~Vnl--~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv   93 (258)
T COG3638          16 GHQALKDVNL--EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV   93 (258)
T ss_pred             CceeeeeEeE--EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence            4445555544  6789999999999999999999999999999999855544332221     35678899999999988


Q ss_pred             CCCCHHHHHHHHH--------HHHhcC----------CccEE-EEcchhhhcCCCccCCccchhhHHHHHHHHH------
Q 024152          178 QPDCGEQALSLVD--------TLIRSG----------SVDVV-VVDSVAALVPKGELDGEMGDAHMAMQARLMS------  232 (271)
Q Consensus       178 ~~~~~~e~~~~~~--------~l~~~~----------~~~lv-vID~l~~~~~~~~l~~~~g~~~~~~~~~~l~------  232 (271)
                      +..++-+++...+        .+..-.          .+..+ +.|+.  ......+++  |++||+..+|++.      
T Consensus        94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A--~qra~~LSG--GQQQRVaIARaL~Q~pkiI  169 (258)
T COG3638          94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA--YQRASTLSG--GQQQRVAIARALVQQPKII  169 (258)
T ss_pred             cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH--HHHhccCCc--chhHHHHHHHHHhcCCCEE
Confidence            8888776643321        111000          01111 12221  111344555  8999999999984      


Q ss_pred             ---------------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 ---------------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ---------------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                                     ..+..|++++++.|+|||+..|.-+
T Consensus       170 LADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd  209 (258)
T COG3638         170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD  209 (258)
T ss_pred             ecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence                           3555788889999999999998653

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.41  E-value=2e-13  Score=117.71  Aligned_cols=140  Identities=19%  Similarity=0.259  Sum_probs=105.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE-----EcCC-CCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF-----IDAE-HALDPSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~-----~~~e-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      ++.-.+++|.|++|+||||+.++|++...|+.|.+..     ++.+ ..+-+.-.+++||+||+-++++++++..++.+.
T Consensus        21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG  100 (352)
T COG4148          21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG  100 (352)
T ss_pred             CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhh
Confidence            4444799999999999999999999999998876543     2333 223345578899999999999999998888776


Q ss_pred             HHHHhc----CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhh
Q 024152          190 DTLIRS----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSL  244 (271)
Q Consensus       190 ~~l~~~----~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake  244 (271)
                      +.....    .-++++-|..|...+| ..+++  |++||+...|++                     .+++--|.++.+|
T Consensus       101 ~~~~~~~~fd~iv~lLGI~hLL~R~P-~~LSG--GEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e  177 (352)
T COG4148         101 MWKSMRAQFDQLVALLGIEHLLDRYP-GTLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE  177 (352)
T ss_pred             hcccchHhHHHHHHHhCcHHHHhhCC-CccCc--chhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh
Confidence            543311    1144555666655554 34444  899999999987                     4566688889999


Q ss_pred             cCcEEEEEcccccc
Q 024152          245 SQTILIFINQVFSI  258 (271)
Q Consensus       245 ~~~~Vi~~sql~~~  258 (271)
                      .++||+.+||-.+.
T Consensus       178 ~~IPIlYVSHS~~E  191 (352)
T COG4148         178 INIPILYVSHSLDE  191 (352)
T ss_pred             cCCCEEEEecCHHH
Confidence            99999999997754

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.41  E-value=4.8e-13  Score=121.54  Aligned_cols=139  Identities=17%  Similarity=0.214  Sum_probs=94.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||+++|++...++.|.|.+ +++...  . +   ..++.+++.+|...++...++.+++.+
T Consensus        27 ~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i-~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~  105 (343)
T TIGR02314        27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIV-DGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVAL  105 (343)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHH
Confidence            57799999999999999999999999999999998554 433221  1 1   235578999999888877888888766


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......          ..-++.+-+......+ ..++++  |++||+..++++.                     .+...
T Consensus       106 ~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-~~~LSg--GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l  182 (343)
T TIGR02314       106 PLELDNTPKDEIKRKVTELLALVGLGDKHDSY-PSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL  182 (343)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            433210          0001222222221222 133443  8999999999983                     34445


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |+++.++.++|||+++|-..
T Consensus       183 L~~l~~~~g~tiiliTH~~~  202 (343)
T TIGR02314       183 LKEINRRLGLTILLITHEMD  202 (343)
T ss_pred             HHHHHHhcCCEEEEEeCCHH
Confidence            66667778999999999763

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=3.6e-13  Score=123.89  Aligned_cols=139  Identities=16%  Similarity=0.163  Sum_probs=96.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...++.|.|. ++++... .+...+.+|+.+|+..+++.+++.+++.+..+..
T Consensus        41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~  119 (377)
T PRK11607         41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM-LDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD  119 (377)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-ECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence            5679999999999999999999999999999999854 5544322 1234567999999999999999999887653321


Q ss_pred             h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .          ..-++.+-+..+.... ...++  .|++||...++++.                     .....|+++.
T Consensus       120 ~~~~~~~~~~v~~~l~~l~L~~~~~~~-~~~LS--gGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  196 (377)
T PRK11607        120 KLPKAEIASRVNEMLGLVHMQEFAKRK-PHQLS--GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL  196 (377)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            0          0011222222222222 12344  38999999999983                     2223556667


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.++|+|+++|-..
T Consensus       197 ~~~g~tii~vTHd~~  211 (377)
T PRK11607        197 ERVGVTCVMVTHDQE  211 (377)
T ss_pred             HhcCCEEEEEcCCHH
Confidence            788999999999764

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.40  E-value=4.7e-13  Score=122.48  Aligned_cols=140  Identities=15%  Similarity=0.164  Sum_probs=96.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~--g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|.||||+|||||++.|++...++.  |.+. ++.+... .....+.+++.+|+..+++.+++.+++.+..+
T Consensus        27 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~-~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~  105 (362)
T TIGR03258        27 EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA-IADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLR  105 (362)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE-ECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence            567999999999999999999999999999988  9855 4443222 12345678999999999988999998876433


Q ss_pred             HHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152          192 LIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH  240 (271)
Q Consensus       192 l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~  240 (271)
                      ...          ..-++.+-++.+.... -..++  .|++||+..++++.                     ++...|++
T Consensus       106 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-~~~LS--gGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~  182 (362)
T TIGR03258       106 AQKMPKADIAERVADALKLVGLGDAAAHL-PAQLS--GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA  182 (362)
T ss_pred             HcCCCHHHHHHHHHHHHHhcCCCchhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            210          0012223333332222 13344  38999999999983                     33445556


Q ss_pred             HHhhc-CcEEEEEcccccc
Q 024152          241 SLSLS-QTILIFINQVFSI  258 (271)
Q Consensus       241 lake~-~~~Vi~~sql~~~  258 (271)
                      +.++. ++|+|+++|....
T Consensus       183 l~~~~~g~til~vTHd~~e  201 (362)
T TIGR03258       183 LHEELPELTILCVTHDQDD  201 (362)
T ss_pred             HHHhCCCCEEEEEeCCHHH
Confidence            66676 8999999997743

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.40  E-value=1.4e-12  Score=107.75  Aligned_cols=148  Identities=18%  Similarity=0.193  Sum_probs=101.1

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH-HHHHHcCCcCCcceecCCCCHH
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      ..++.+.-  -.+.|++++|.|+||+||||+++.|+..+.|+.|.|..-+......+ ...+.+|+.+....++..++.+
T Consensus        16 ~AvrdVSF--~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r   93 (245)
T COG4555          16 QAVRDVSF--EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR   93 (245)
T ss_pred             hhhhheeE--EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence            35555654  78899999999999999999999999999999998655444433333 5678899999888888889999


Q ss_pred             HHHHHHHHHHh--cCC---------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------------------H
Q 024152          184 QALSLVDTLIR--SGS---------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM--------------------S  232 (271)
Q Consensus       184 e~~~~~~~l~~--~~~---------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l--------------------~  232 (271)
                      |++.++-++..  ...         -.+-.-|++....  .+++  .|.+|++..+|++                    +
T Consensus        94 Enl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv--~~~S--~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~  169 (245)
T COG4555          94 ENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV--GEFS--TGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR  169 (245)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH--hhhc--hhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHH
Confidence            88776544321  000         0011112221111  1222  2677777777776                    3


Q ss_pred             HHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          233 QALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       233 ~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      ..++.+....++.|.+||+.||....
T Consensus       170 r~~~dfi~q~k~egr~viFSSH~m~E  195 (245)
T COG4555         170 RKFHDFIKQLKNEGRAVIFSSHIMQE  195 (245)
T ss_pred             HHHHHHHHHhhcCCcEEEEecccHHH
Confidence            45556666678889999999998743

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.40  E-value=6.5e-13  Score=112.62  Aligned_cols=124  Identities=20%  Similarity=0.295  Sum_probs=90.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH-
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI-  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~-  193 (271)
                      -+++|++.++.|+||+||||+.++|++.+.++.|.+-|.+.+  ..+....++||.|+.-.+++.+++.|.+.++.+++ 
T Consensus        24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~--~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG  101 (300)
T COG4152          24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP--LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG  101 (300)
T ss_pred             eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcc--hhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC
Confidence            677999999999999999999999999999999998887754  33456778999999988888888875443322110 


Q ss_pred             -------------------------------------------hcCCccEEEEcchh-hhcCCCccCCccchhhHHHHHH
Q 024152          194 -------------------------------------------RSGSVDVVVVDSVA-ALVPKGELDGEMGDAHMAMQAR  229 (271)
Q Consensus       194 -------------------------------------------~~~~~~lvvID~l~-~~~~~~~l~~~~g~~~~~~~~~  229 (271)
                                                                 --+.|+++++|..- .+.|              ..++
T Consensus       102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP--------------VN~e  167 (300)
T COG4152         102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP--------------VNVE  167 (300)
T ss_pred             CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh--------------hhHH
Confidence                                                       01578888888643 2322              1123


Q ss_pred             HHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          230 LMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       230 ~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .+.+...    -.++.|.|||+.||.+..
T Consensus       168 lLk~~I~----~lk~~GatIifSsH~Me~  192 (300)
T COG4152         168 LLKDAIF----ELKEEGATIIFSSHRMEH  192 (300)
T ss_pred             HHHHHHH----HHHhcCCEEEEecchHHH
Confidence            3334444    447899999999998854

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.39  E-value=4.8e-13  Score=122.13  Aligned_cols=139  Identities=17%  Similarity=0.210  Sum_probs=94.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...++.|.+. ++++... .....+.+++.+|+..+++.+++.+++.+.....
T Consensus        24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~  102 (353)
T PRK10851         24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR-FHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL  102 (353)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhc
Confidence            5669999999999999999999999999999999855 4443221 1223457899999988888889988877543210


Q ss_pred             h--------------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          194 R--------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       194 ~--------------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      .              ..-++.+-++.+.... ..+++  .|++|+...++++.                     ...+.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--gGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L  179 (353)
T PRK10851        103 PRRERPNAAAIKAKVTQLLEMVQLAHLADRY-PAQLS--GGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL  179 (353)
T ss_pred             ccccCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            0              0001222222222212 12344  38999999999983                     344456


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      +++.++.++|+|+++|-..
T Consensus       180 ~~l~~~~g~tii~vTHd~~  198 (353)
T PRK10851        180 RQLHEELKFTSVFVTHDQE  198 (353)
T ss_pred             HHHHHhcCCEEEEEeCCHH
Confidence            6667778999999999764

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.38  E-value=6.8e-13  Score=122.22  Aligned_cols=82  Identities=20%  Similarity=0.230  Sum_probs=65.1

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCC
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP  179 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~  179 (271)
                      |+..+|.+.-  .+.+|++.+|.|.||+|||||++.+.+.+.|++|.+.+.+.+-.+.   ...+..+|+++|++.+.+.
T Consensus        16 ~~~And~V~l--~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~   93 (501)
T COG3845          16 GVVANDDVSL--SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT   93 (501)
T ss_pred             CEEecCceee--eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc
Confidence            7777777765  8999999999999999999999999999999999865554443332   2455668889999888877


Q ss_pred             CCHHHHH
Q 024152          180 DCGEQAL  186 (271)
Q Consensus       180 ~~~~e~~  186 (271)
                      .|+.|++
T Consensus        94 lTV~ENi  100 (501)
T COG3845          94 LTVAENI  100 (501)
T ss_pred             cchhhhh
Confidence            7776543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.37  E-value=9.4e-13  Score=120.39  Aligned_cols=139  Identities=23%  Similarity=0.269  Sum_probs=96.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHH----HHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL----AETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~----~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||||||||+++|++...+.+|.|. ++++....   ..+    .+.+++.+|+..+++..++.+++.
T Consensus        15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~-i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~   93 (363)
T TIGR01186        15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF-IDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTS   93 (363)
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE-ECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHH
Confidence            5779999999999999999999999999999999855 55433221   122    457899999999888889988877


Q ss_pred             HHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      +...+..          ..-++.+-++.....++ .++++  |++||...++++.                     .+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-~~LSG--Gq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~  170 (363)
T TIGR01186        94 LGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-DELSG--GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQD  170 (363)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            6443210          00122232333222221 33443  8999999999883                     3344


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .+..+.++.+.|||+++|-..
T Consensus       171 ~l~~l~~~~~~Tii~vTHd~~  191 (363)
T TIGR01186       171 ELKKLQATLQKTIVFITHDLD  191 (363)
T ss_pred             HHHHHHHhcCCEEEEEeCCHH
Confidence            555555667999999999774

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.37  E-value=8.9e-13  Score=121.13  Aligned_cols=139  Identities=15%  Similarity=0.158  Sum_probs=92.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...++.|.|.| +.+... .....+.+++.+|+..+++..++.+++.+.....
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~-~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~  103 (369)
T PRK11000         25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA  103 (369)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-CCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence            56799999999999999999999999999999998654 433221 1123456899999988888889888876543211


Q ss_pred             h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .          ..-++.+-++.+.... ...++  .|++|+...++++.                     .....|+++.
T Consensus       104 ~~~~~~~~~~~~~~l~~lgL~~~~~~~-~~~LS--gGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~  180 (369)
T PRK11000        104 GAKKEEINQRVNQVAEVLQLAHLLDRK-PKALS--GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH  180 (369)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            0          0001122222221111 12333  38999999999883                     2333455566


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.+.|||+++|-..
T Consensus       181 ~~~g~tvI~vTHd~~  195 (369)
T PRK11000        181 KRLGRTMIYVTHDQV  195 (369)
T ss_pred             HHhCCEEEEEeCCHH
Confidence            677999999999764

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.36  E-value=4e-12  Score=109.64  Aligned_cols=140  Identities=16%  Similarity=0.156  Sum_probs=88.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC----HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD----PSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.|.+.... ..    ..+.+.+++.+|...++...++.+++.+.
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~  101 (235)
T cd03261          22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP  101 (235)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence            57799999999999999999999999999999998655332211 11    23455688999987777767887776543


Q ss_pred             HHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          190 DTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       190 ~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......           .-++.+-+....... ...++  .|++|+...++++.                     .+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~  178 (235)
T cd03261         102 LREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-PAELS--GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL  178 (235)
T ss_pred             HhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence            211000           001111111111111 12233  38888888888873                     23334


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |..++++.+.+||+++|...
T Consensus       179 l~~~~~~~~~tvi~vsH~~~  198 (235)
T cd03261         179 IRSLKKELGLTSIMVTHDLD  198 (235)
T ss_pred             HHHHHHhcCcEEEEEecCHH
Confidence            55545556899999999764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.35  E-value=1.7e-11  Score=98.44  Aligned_cols=132  Identities=25%  Similarity=0.374  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHH----cCCcCCcceecCCC----CHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET----IGVKTENLLLAQPD----CGEQALSLVDTL  192 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~----~g~~~~~~~~~~~~----~~~e~~~~~~~l  192 (271)
                      +++|.|+||+|||||+..++......++.++|++.+..........    .....++..+....    ........+...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL   80 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence            4789999999999999999999998888999999987765433211    11122232222221    233333344445


Q ss_pred             HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       193 ~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      ....++++++||+++.+.+... .      -.......+.+.++.|...+++.++++|+++|.....
T Consensus        81 ~~~~~~~~lviDe~~~~~~~~~-~------~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          81 RERGGDDLIILDELTRLVRALR-E------IREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             HhCCCCEEEEEEcHHHHHHHHH-H------HHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            5567899999999998763110 0      0011223456778888888888999999999988654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.35  E-value=8.4e-12  Score=103.42  Aligned_cols=124  Identities=19%  Similarity=0.225  Sum_probs=81.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcc------eecCC----CCH------
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL------LLAQP----DCG------  182 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~------~~~~~----~~~------  182 (271)
                      +++|.|+||+|||+|+.+++...+..+.+|+|++.|++...  ..+..+|++.+.+      ...+.    ...      
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~   80 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR   80 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence            47899999999999999999999988889999999988765  3455567765432      11111    011      


Q ss_pred             HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          183 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       183 ~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .+++..+.......++++++||+++.....       ...   .....+...+    ..+++.|+++++++|....
T Consensus        81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~---~~~~~i~~l~----~~l~~~g~tvi~v~~~~~~  142 (187)
T cd01124          81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQS---TARLEIRRLL----FALKRFGVTTLLTSEQSGL  142 (187)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChH---HHHHHHHHHH----HHHHHCCCEEEEEeccccC
Confidence            133455555555678999999999987631       000   1112222333    3334569999999997643

A related protein is found in archaea.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.34  E-value=2.1e-12  Score=109.55  Aligned_cols=148  Identities=20%  Similarity=0.148  Sum_probs=94.0

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCccee--cCC
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLL--AQP  179 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~--~~~  179 (271)
                      ..|+.+--  -+.+|+.++|+|++|||||||++.+++...+..|.|.|.+.+....   +.+.+.+.+++|++.-  .+.
T Consensus        21 ~~l~~VS~--~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~   98 (252)
T COG1124          21 HALNNVSL--EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR   98 (252)
T ss_pred             hhhcceeE--EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence            34444433  5779999999999999999999999999999999865544333222   2445566777877543  233


Q ss_pred             CCHHHHHHHHHHHH--------hcCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHH-------------------
Q 024152          180 DCGEQALSLVDTLI--------RSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLM-------------------  231 (271)
Q Consensus       180 ~~~~e~~~~~~~l~--------~~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l-------------------  231 (271)
                      .++.+++.-.....        ...-++.|-++ +....+ ..++++  |+.||...+|++                   
T Consensus        99 ~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-P~eLSG--GQ~QRiaIARAL~~~PklLIlDEptSaLD~s  175 (252)
T COG1124          99 RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR-PHELSG--GQRQRIAIARALIPEPKLLILDEPTSALDVS  175 (252)
T ss_pred             hhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC-chhcCh--hHHHHHHHHHHhccCCCEEEecCchhhhcHH
Confidence            45555443322110        00001112222 112223 244554  788888888887                   


Q ss_pred             --HHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          232 --SQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       232 --~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                        ++++..|..+.++++.+.+++||-..
T Consensus       176 iQa~IlnlL~~l~~~~~lt~l~IsHdl~  203 (252)
T COG1124         176 VQAQILNLLLELKKERGLTYLFISHDLA  203 (252)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEeCcHH
Confidence              46777888889999999999999763

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.34  E-value=4.6e-13  Score=110.45  Aligned_cols=142  Identities=15%  Similarity=0.173  Sum_probs=97.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH---HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP---SLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~---~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      .+.+||++++.||||+||||...++.+.+.+++|+|.+-+..-+..+   ..+..+||.+|...++..+++++++..+..
T Consensus        26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE  105 (243)
T COG1137          26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE  105 (243)
T ss_pred             EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence            67899999999999999999999999999999998554443322222   223347899999999999999988765543


Q ss_pred             HHhcC-C--ccEEEEcch------hhhcCCCccCCccchhhHHHHHHHHH--------------------HHHHHHHHHH
Q 024152          192 LIRSG-S--VDVVVVDSV------AALVPKGELDGEMGDAHMAMQARLMS--------------------QALRKLSHSL  242 (271)
Q Consensus       192 l~~~~-~--~~lvvID~l------~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~~~r~L~~la  242 (271)
                      ...+. .  ....-+|.|      ..+......+-+.|+++|...+|+++                    ...+.+...+
T Consensus       106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L  185 (243)
T COG1137         106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL  185 (243)
T ss_pred             hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH
Confidence            32110 0  000011111      22222333444458999999999984                    3445666778


Q ss_pred             hhcCcEEEEEcccc
Q 024152          243 SLSQTILIFINQVF  256 (271)
Q Consensus       243 ke~~~~Vi~~sql~  256 (271)
                      ++.|+.|+++.|.-
T Consensus       186 ~~rgiGvLITDHNV  199 (243)
T COG1137         186 KDRGIGVLITDHNV  199 (243)
T ss_pred             HhCCceEEEccccH
Confidence            89999999999864

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.34  E-value=5e-12  Score=109.30  Aligned_cols=140  Identities=17%  Similarity=0.159  Sum_probs=87.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC----HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD----PSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.|.+..-. ..    ..+.+.+++.+|+..++...++.+++...
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  102 (241)
T cd03256          23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG  102 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence            57799999999999999999999999999888898655432211 11    23455688999887777667877766532


Q ss_pred             HH--------HHh------c----CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152          190 DT--------LIR------S----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS-------------------  232 (271)
Q Consensus       190 ~~--------l~~------~----~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------------  232 (271)
                      ..        +..      .    .-++.+-++...... ...++  .|++|+...++++.                   
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~  179 (241)
T cd03256         103 RLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-ADQLS--GGQQQRVAIARALMQQPKLILADEPVASLDPAS  179 (241)
T ss_pred             hcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            11        000      0    000111111111111 12233  48888888888873                   


Q ss_pred             --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                        ...+.|..++++.+.+||+++|...
T Consensus       180 ~~~l~~~l~~~~~~~~~tii~~tH~~~  206 (241)
T cd03256         180 SRQVMDLLKRINREEGITVIVSLHQVD  206 (241)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence              2333445555566899999999764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.34  E-value=5.4e-12  Score=113.00  Aligned_cols=139  Identities=13%  Similarity=0.154  Sum_probs=89.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||+|||||++.+++...+..|.|.+.+...... ..+.+.+++.+|...++...++.+++.+...+.
T Consensus        15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~   94 (302)
T TIGR01188        15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY   94 (302)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence            6779999999999999999999999999999999866544222112 244567899999888777788888776543221


Q ss_pred             hc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 RS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      ..          .-++.+-++...... -..++  .|++|+...++++.                     .....|+.+.
T Consensus        95 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~  171 (302)
T TIGR01188        95 GLPKDEAEERAEELLELFELGEAADRP-VGTYS--GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK  171 (302)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhCCc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence            00          001111111111111 12233  38888888888873                     2222344433


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                       +.+.+||+++|...
T Consensus       172 -~~g~tvi~~sH~~~  185 (302)
T TIGR01188       172 -EEGVTILLTTHYME  185 (302)
T ss_pred             -hCCCEEEEECCCHH
Confidence             44899999999764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.34  E-value=4.6e-12  Score=107.95  Aligned_cols=141  Identities=18%  Similarity=0.156  Sum_probs=88.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CH-----HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DP-----SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~-----~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.|.+..... ..     .+.+.+++.+|...++...++.+++.+
T Consensus        26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~  105 (218)
T cd03255          26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL  105 (218)
T ss_pred             EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHH
Confidence            577999999999999999999999999999999986544322111 11     123568888988777777788777655


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......          ..-+..+-++...... ...++  .|++|+...++++.                     .+.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~  182 (218)
T cd03255         106 PLLLAGVPKKERRERAEELLERVGLGDRLNHY-PSELS--GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL  182 (218)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-hhhcC--HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            322110          0001111111111111 12233  38888888888772                     23344


Q ss_pred             HHHHHhhcCcEEEEEcccccc
Q 024152          238 LSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~~  258 (271)
                      |+.++++.+++||+++|....
T Consensus       183 l~~~~~~~~~tii~~sH~~~~  203 (218)
T cd03255         183 LRELNKEAGTTIVVVTHDPEL  203 (218)
T ss_pred             HHHHHHhcCCeEEEEECCHHH
Confidence            555555568999999997643

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.34  E-value=4.4e-12  Score=102.37  Aligned_cols=139  Identities=19%  Similarity=0.213  Sum_probs=98.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC------CCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE------HALDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|+-++|+||+|+|||||+..+++.-.+++|.|.+++..      +.....+.+.+|++||.+.+.+.++..|+++.
T Consensus        32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l  111 (228)
T COG4181          32 VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL  111 (228)
T ss_pred             EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence            466999999999999999999999999999999997777632      11223567789999999999998888877654


Q ss_pred             HHHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ...+..+          .-+..+-+-.-..++| .++++  |++||+..+|+++                     ++...
T Consensus       112 PleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-~qLSG--GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL  188 (228)
T COG4181         112 PLELRGESSADSRAGAKALLEAVGLGKRLTHYP-AQLSG--GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL  188 (228)
T ss_pred             hhhhcCCccccHHHHHHHHHHHhCcccccccCc-cccCc--hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence            3332210          0011111111223343 44554  8999999999983                     34556


Q ss_pred             HHHHHhhcCcEEEEEcccc
Q 024152          238 LSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~  256 (271)
                      |-.+.+|.+.|.|+++|-.
T Consensus       189 lF~lnre~G~TlVlVTHD~  207 (228)
T COG4181         189 LFALNRERGTTLVLVTHDP  207 (228)
T ss_pred             HHHHhhhcCceEEEEeCCH
Confidence            6667899999999999954

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.9e-12  Score=118.35  Aligned_cols=139  Identities=17%  Similarity=0.216  Sum_probs=92.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.||||+|||||++.|++...+++|.+.+ +.+...       .+...+.+++.+|+..+++..++.+++.
T Consensus        20 ~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~-~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~   98 (352)
T PRK11144         20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVL-NGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR   98 (352)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHH
Confidence            56799999999999999999999999999998898654 433211       1234567889999988888888888776


Q ss_pred             HHHHHHh----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          188 LVDTLIR----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       188 ~~~~l~~----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      +......    ..-++.+-++.+.... ...+++  |++|+...++++.                     .....|++++
T Consensus        99 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~  175 (352)
T PRK11144         99 YGMAKSMVAQFDKIVALLGIEPLLDRY-PGSLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA  175 (352)
T ss_pred             hhhhhhhHHHHHHHHHHcCCchhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            4321000    0001112122222211 133443  8888988888873                     2334556666


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.++|||+++|...
T Consensus       176 ~~~g~tii~vTHd~~  190 (352)
T PRK11144        176 REINIPILYVSHSLD  190 (352)
T ss_pred             HhcCCeEEEEecCHH
Confidence            777999999999763

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.33  E-value=4.6e-12  Score=107.59  Aligned_cols=139  Identities=17%  Similarity=0.212  Sum_probs=85.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.| +.+... .....+.+++.+|+...+...++.+++.......
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~-~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~  100 (213)
T cd03259          22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI-DGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR  100 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc
Confidence            56799999999999999999999999999899998654 432211 1123456788888876666667776654432110


Q ss_pred             -------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 -------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                             .   ..-++.+-++...... ...++  .|++|+...++++.                     ...+.|..++
T Consensus       101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~  177 (213)
T cd03259         101 GVPKAEIRARVRELLELVGLEGLLNRY-PHELS--GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ  177 (213)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                   0   0001111111111111 12233  37888888888873                     2333444445


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.+.+||+++|...
T Consensus       178 ~~~~~tii~~sH~~~  192 (213)
T cd03259         178 RELGITTIYVTHDQE  192 (213)
T ss_pred             HHcCCEEEEEecCHH
Confidence            556899999999653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.33  E-value=2.7e-12  Score=115.08  Aligned_cols=139  Identities=14%  Similarity=0.179  Sum_probs=89.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||+|||||++.+++...+++|.|.+.+.+... .....+.+|+.+|+..++...++.+++.+...+.
T Consensus        29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~  108 (306)
T PRK13537         29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF  108 (306)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc
Confidence            677999999999999999999999999999999986554432211 1245677999999988887788888876543321


Q ss_pred             hcCC----------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------H-HHHHHHHHH
Q 024152          194 RSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------Q-ALRKLSHSL  242 (271)
Q Consensus       194 ~~~~----------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~-~~r~L~~la  242 (271)
                      ....          ++.+-+....... -..++  .|++|+...++++.                    . ....|+.+ 
T Consensus       109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l-  184 (306)
T PRK13537        109 GLSAAAARALVPPLLEFAKLENKADAK-VGELS--GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL-  184 (306)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchHhcCc-hhhCC--HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-
Confidence            1000          0111111100000 11223  37888888888872                    2 22233333 


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.|++|+++||...
T Consensus       185 ~~~g~till~sH~l~  199 (306)
T PRK13537        185 LARGKTILLTTHFME  199 (306)
T ss_pred             HhCCCEEEEECCCHH
Confidence            445899999999874

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.33  E-value=5.2e-12  Score=107.82  Aligned_cols=140  Identities=14%  Similarity=0.156  Sum_probs=87.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+.+|++++|.|+||+|||||++.|++...+..|.|.+.+.... ....+.+.+++.+|+..++...++.+++.......
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~  101 (220)
T cd03265          22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY  101 (220)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence            57799999999999999999999999998888898655432211 11234556888888877666677777665432211


Q ss_pred             h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .          ..-+..+-++...... ...++  .|++|+...++++.                     .....|..++
T Consensus       102 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  178 (220)
T cd03265         102 GVPGAERRERIDELLDFVGLLEAADRL-VKTYS--GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK  178 (220)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence            0          0001111111111111 12233  38888888888772                     2233444445


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.+.+||+++|-..
T Consensus       179 ~~~~~tvi~~tH~~~  193 (220)
T cd03265         179 EEFGMTILLTTHYME  193 (220)
T ss_pred             HhcCCEEEEEeCCHH
Confidence            556899999999653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.32  E-value=3e-13  Score=114.76  Aligned_cols=85  Identities=20%  Similarity=0.208  Sum_probs=65.8

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcC--CcCCcceecCC
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIG--VKTENLLLAQP  179 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g--~~~~~~~~~~~  179 (271)
                      |+..+|...-  .+.+|++++|+||||+|||||.+.|.+.+.|+.|.|.|-+..-. ..+....+.|  -.||..++++.
T Consensus        16 Gl~Al~~Vsl--~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~   93 (250)
T COG0411          16 GLTAVNDVSL--EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG   93 (250)
T ss_pred             CEEEEeceeE--EEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence            6777787766  89999999999999999999999999999999998665443211 2223333444  46899999999


Q ss_pred             CCHHHHHHHH
Q 024152          180 DCGEQALSLV  189 (271)
Q Consensus       180 ~~~~e~~~~~  189 (271)
                      +++.|++..+
T Consensus        94 lTVlENv~va  103 (250)
T COG0411          94 LTVLENVAVG  103 (250)
T ss_pred             CcHHHHHHHH
Confidence            9988876554

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.32  E-value=4.3e-12  Score=109.76  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.|.+.+-.......+.+++.+|+..++...++.+++.+......
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  103 (239)
T cd03296          24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP  103 (239)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcc
Confidence            56799999999999999999999999999888898655432211111123457888888776666777776654321110


Q ss_pred             c--------------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152          195 S--------------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS  239 (271)
Q Consensus       195 ~--------------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~  239 (271)
                      .              .-++.+-++.+.... ...++  .|++|+...++++.                     .....|.
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  180 (239)
T cd03296         104 RSERPPEAEIRAKVHELLKLVQLDWLADRY-PAQLS--GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR  180 (239)
T ss_pred             ccccCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            0              001111111111111 12233  38888888888873                     2233444


Q ss_pred             HHHhhcCcEEEEEccccc
Q 024152          240 HSLSLSQTILIFINQVFS  257 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~~  257 (271)
                      .++++.+.+||+++|...
T Consensus       181 ~~~~~~~~tvii~sH~~~  198 (239)
T cd03296         181 RLHDELHVTTVFVTHDQE  198 (239)
T ss_pred             HHHHHcCCEEEEEeCCHH
Confidence            445556899999999764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.32  E-value=5.2e-12  Score=107.10  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+.+|++++|.|+||+|||||++.+++...+..|.|. ++.+.... ....+.+++.+|+...+...++.+++.+.....
T Consensus        20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~-~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~   98 (211)
T cd03298          20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL-INGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPG   98 (211)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccc
Confidence            5779999999999999999999999999998889865 44332211 123456888888877766667777654321100


Q ss_pred             -------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 -------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                             .   ..-+..+-++...... ...++  .|++|+...++++.                     ...+.|.+++
T Consensus        99 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  175 (211)
T cd03298          99 LKLTAEDRQAIEVALARVGLAGLEKRL-PGELS--GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH  175 (211)
T ss_pred             cCccHHHHHHHHHHHHHcCCHHHHhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                   0   0001111111111111 12233  37888888888773                     2333444455


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.+++||+++|...
T Consensus       176 ~~~~~tii~~sH~~~  190 (211)
T cd03298         176 AETKMTVLMVTHQPE  190 (211)
T ss_pred             HhcCCEEEEEecCHH
Confidence            567999999999664

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.32  E-value=3.6e-12  Score=108.47  Aligned_cols=138  Identities=17%  Similarity=0.226  Sum_probs=86.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.| +.+...  .    ..+.+.+++.+|+..++...++.+++.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~  103 (216)
T TIGR00960        25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF-NGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAF  103 (216)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHH
Confidence            57799999999999999999999999999888898654 433211  1    1245678999998877776788777654


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......          ..-++.+-++...... ...++  .|++|+...++++.                     .....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  180 (216)
T TIGR00960       104 PLRIIGVPPRDANERVSAALEKVGLEGKAHAL-PMQLS--GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL  180 (216)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence            321100          0001111111111111 12333  38888888888873                     22333


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |.++. +.+.+||+++|...
T Consensus       181 l~~~~-~~~~tii~vsH~~~  199 (216)
T TIGR00960       181 FEEFN-RRGTTVLVATHDIN  199 (216)
T ss_pred             HHHHH-HCCCEEEEEeCCHH
Confidence            44433 35899999999754

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.32  E-value=7.7e-12  Score=108.29  Aligned_cols=140  Identities=18%  Similarity=0.184  Sum_probs=85.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC----HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD----PSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.|++...+.+|.|.+.+.... ..    ..+.+.+++.+|+..++...++.+++...
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~  103 (243)
T TIGR02315        24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG  103 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhc
Confidence            56699999999999999999999999999888998655432211 11    12456789999887776666777665431


Q ss_pred             HH--------HH-------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152          190 DT--------LI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS-------------------  232 (271)
Q Consensus       190 ~~--------l~-------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------------  232 (271)
                      ..        +.       .   ..-+..+-++...... ...++  .|++|+...++++.                   
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~  180 (243)
T TIGR02315       104 RLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-ADQLS--GGQQQRVAIARALAQQPDLILADEPIASLDPKT  180 (243)
T ss_pred             ccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            10        00       0   0001111111111111 12233  38888888888873                   


Q ss_pred             --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                        .....|..++++.+++||+++|...
T Consensus       181 ~~~l~~~l~~~~~~~~~tiii~tH~~~  207 (243)
T TIGR02315       181 SKQVMDYLKRINKEDGITVIINLHQVD  207 (243)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence              2333444445566899999999764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.32  E-value=4.8e-12  Score=107.08  Aligned_cols=138  Identities=17%  Similarity=0.179  Sum_probs=84.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+.... ..+.+.+++.+|+..++...++.+++.......
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~  100 (208)
T cd03268          22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF-DGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL  100 (208)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-CCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc
Confidence            56799999999999999999999999999888998654 4332211 234556888888877666677877765432211


Q ss_pred             hc------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcC
Q 024152          194 RS------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQ  246 (271)
Q Consensus       194 ~~------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~  246 (271)
                      ..      .-++.+-++...... -..++  .|++|+...++++.                     .....|.++.+ .+
T Consensus       101 ~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~  176 (208)
T cd03268         101 GIRKKRIDEVLDVVGLKDSAKKK-VKGFS--LGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QG  176 (208)
T ss_pred             CCcHHHHHHHHHHcCCHHHHhhh-HhhCC--HHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence            00      001111111111111 11233  37777777777762                     22333444343 68


Q ss_pred             cEEEEEccccc
Q 024152          247 TILIFINQVFS  257 (271)
Q Consensus       247 ~~Vi~~sql~~  257 (271)
                      .+||+++|-..
T Consensus       177 ~tii~~tH~~~  187 (208)
T cd03268         177 ITVLISSHLLS  187 (208)
T ss_pred             CEEEEEcCCHH
Confidence            99999999654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.31  E-value=3.5e-12  Score=119.31  Aligned_cols=81  Identities=25%  Similarity=0.236  Sum_probs=60.1

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC-CC-CCHHHHHHcC--CcCCcceecC
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE-HA-LDPSLAETIG--VKTENLLLAQ  178 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e-~~-~~~~~~~~~g--~~~~~~~~~~  178 (271)
                      |+..||.+.-  -+.+|++++|+|.||+|||||++.+++...+++|.+ +++++ .. ..+.-+...|  +.+|.+.+.+
T Consensus        20 gV~AL~~v~l--~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I-~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p   96 (500)
T COG1129          20 GVKALDGVSL--TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI-LIDGKPVAFSSPRDALAAGIATVHQELSLVP   96 (500)
T ss_pred             Cceeecccee--EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE-EECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence            6667776655  788999999999999999999999999999999984 45543 22 2333344444  5678777777


Q ss_pred             CCCHHHHH
Q 024152          179 PDCGEQAL  186 (271)
Q Consensus       179 ~~~~~e~~  186 (271)
                      .+++.|++
T Consensus        97 ~LsVaeNi  104 (500)
T COG1129          97 NLSVAENI  104 (500)
T ss_pred             CccHHHHh
Confidence            77766554

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.31  E-value=4.4e-12  Score=111.24  Aligned_cols=152  Identities=16%  Similarity=0.189  Sum_probs=113.4

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-------HHHHHHcCC
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGV  169 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-------~~~~~~~g~  169 (271)
                      .+|..-|+.+.+.     .++.|+|..|.|-+|||||||++++.+.+.|..|+|+ ++++....       ..+++.+++
T Consensus        37 ~tg~vvGv~~~sl-----~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~il-v~g~di~~~~~~~Lr~~Rr~~~sM  110 (386)
T COG4175          37 KTGLVVGVNDASL-----DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL-VDGKDIAKLSAAELRELRRKKISM  110 (386)
T ss_pred             hhCcEEeecccee-----eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEE-ECCcchhcCCHHHHHHHHhhhhhh
Confidence            3556667766664     4669999999999999999999999999999999855 44443221       245677999


Q ss_pred             cCCcceecCCCCHHHHHHHHHH----------HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------
Q 024152          170 KTENLLLAQPDCGEQALSLVDT----------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS-------  232 (271)
Q Consensus       170 ~~~~~~~~~~~~~~e~~~~~~~----------l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------  232 (271)
                      +||++.+.+..++.++..+-..          ......+.+|-++.....+| .++++  |++||+-.+|+++       
T Consensus       111 VFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-~eLSG--GMqQRVGLARAla~~~~IlL  187 (386)
T COG4175         111 VFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-NELSG--GMQQRVGLARALANDPDILL  187 (386)
T ss_pred             hhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-ccccc--hHHHHHHHHHHHccCCCEEE
Confidence            9999999999998887654211          11123456666666666664 66776  8999999999984       


Q ss_pred             --------------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --------------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --------------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                                    +.-..|.++-+++..||||+||-.+
T Consensus       188 MDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd  226 (386)
T COG4175         188 MDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD  226 (386)
T ss_pred             ecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence                          3344778888999999999999764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.31  E-value=4e-12  Score=115.77  Aligned_cols=140  Identities=16%  Similarity=0.202  Sum_probs=90.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-H---HHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-P---SLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.|.+.+-. .. .   .+.+.+++.+|+..++...++.+++.+.
T Consensus        27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~  106 (343)
T PRK11153         27 HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALP  106 (343)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHH
Confidence            57799999999999999999999999999999998655432211 11 1   2345689999988777777888777654


Q ss_pred             HHHHh-------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          190 DTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       190 ~~l~~-------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      .....       .   .-++.+-++...... ...++  .|++|+...++++.                     .+...|
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L  183 (343)
T PRK11153        107 LELAGTPKAEIKARVTELLELVGLSDKADRY-PAQLS--GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL  183 (343)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            32110       0   001111111111111 12333  38888888888873                     334455


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      +.+.++.+++||+++|...
T Consensus       184 ~~l~~~~g~tiilvtH~~~  202 (343)
T PRK11153        184 KDINRELGLTIVLITHEMD  202 (343)
T ss_pred             HHHHHhcCCEEEEEeCCHH
Confidence            5556667999999999764

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.31  E-value=4.9e-12  Score=107.37  Aligned_cols=140  Identities=15%  Similarity=0.144  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.|.+..-.......+.+++.+|+..++...++.+++........
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  101 (213)
T cd03301          22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK  101 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC
Confidence            57799999999999999999999999999888898655332211111112457888888766666677776654321100


Q ss_pred             -------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHh
Q 024152          195 -------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLS  243 (271)
Q Consensus       195 -------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lak  243 (271)
                             +   .-++.+-++...... ...++  .|++|+...++++.                     .....|..+++
T Consensus       102 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  178 (213)
T cd03301         102 VPKDEIDERVREVAELLQIEHLLDRK-PKQLS--GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ  178 (213)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence                   0   001111111111111 12233  37888888887763                     23334555555


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      +.+++||+++|-..
T Consensus       179 ~~~~tvi~~sH~~~  192 (213)
T cd03301         179 RLGTTTIYVTHDQV  192 (213)
T ss_pred             HcCCEEEEEeCCHH
Confidence            66899999999653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.31  E-value=1.4e-11  Score=102.81  Aligned_cols=146  Identities=17%  Similarity=0.169  Sum_probs=96.8

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCCC-----HHHHHHcCCcCCcce
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLL  175 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~~-----~~~~~~~g~~~~~~~  175 (271)
                      .|..+.-  .++++.+++|.||+|||||||++++.......     .|.|.|.+ +....     -.+++++|+++|++.
T Consensus        22 aL~~i~l--~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g-~ni~~~~~d~~~lRr~vGMVFQkPn   98 (253)
T COG1117          22 ALKDINL--DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG-KNIYDPKVDVVELRRRVGMVFQKPN   98 (253)
T ss_pred             hhccCce--eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC-eeccCCCCCHHHHHHHheeeccCCC
Confidence            4444444  89999999999999999999999998877643     36655543 33222     267899999999998


Q ss_pred             ecCCCCHHHHHHHHHHHHhcCC--c---------cEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH-----------
Q 024152          176 LAQPDCGEQALSLVDTLIRSGS--V---------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ-----------  233 (271)
Q Consensus       176 ~~~~~~~~e~~~~~~~l~~~~~--~---------~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------  233 (271)
                      .++ ++..|+++...++..-.+  +         +.-..|.+-.......++.+.|++||...+|+++-           
T Consensus        99 PFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt  177 (253)
T COG1117          99 PFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT  177 (253)
T ss_pred             CCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence            876 888888776544321110  1         11234444433334444455589999999998842           


Q ss_pred             ---------HHHHHHHHHhhcCcEEEEEcccc
Q 024152          234 ---------ALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       234 ---------~~r~L~~lake~~~~Vi~~sql~  256 (271)
                               ....|..-+| .+-|||+++|.+
T Consensus       178 SALDPIsT~kIEeLi~eLk-~~yTIviVTHnm  208 (253)
T COG1117         178 SALDPISTLKIEELITELK-KKYTIVIVTHNM  208 (253)
T ss_pred             cccCchhHHHHHHHHHHHH-hccEEEEEeCCH
Confidence                     2224433333 567999999976

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.31  E-value=4.2e-12  Score=107.93  Aligned_cols=139  Identities=17%  Similarity=0.187  Sum_probs=86.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHH-
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL-  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l-  192 (271)
                      -+.+|++++|.|+||+|||||++.+++...+.+|.|.+ +...... ..+.+.+++.+|+..++...++.+++...... 
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~   98 (213)
T TIGR01277        20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV-NDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG   98 (213)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhcc
Confidence            57799999999999999999999999999999998654 4332211 12345688888887777666776665432110 


Q ss_pred             H-----h----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          193 I-----R----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       193 ~-----~----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .     .    ..-++.+-++.+.... ...++  .|++|+...++++.                     .....|..+.
T Consensus        99 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~  175 (213)
T TIGR01277        99 LKLNAEQQEKVVDAAQQVGIADYLDRL-PEQLS--GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC  175 (213)
T ss_pred             CCccHHHHHHHHHHHHHcCcHHHhhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence            0     0    0001111111111111 12233  37888888888772                     2333444445


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.+.+||+++|...
T Consensus       176 ~~~~~tii~vsh~~~  190 (213)
T TIGR01277       176 SERQRTLLMVTHHLS  190 (213)
T ss_pred             HhcCCEEEEEeCCHH
Confidence            556899999999764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.30  E-value=1.7e-11  Score=100.89  Aligned_cols=124  Identities=18%  Similarity=0.273  Sum_probs=84.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHH-------
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQAL-------  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~-------  186 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.+.+.+.+.. ....+.+.+++.+|+..++...++.+++       
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~  101 (173)
T cd03230          22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK  101 (173)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence            46699999999999999999999999998888888654332211 1123455688888887666655665553       


Q ss_pred             ---HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          187 ---SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       187 ---~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                         .+++.+.  .+++++++|....-.+.             .-.+.+.+.++.+   +++ +.+||+++|-..
T Consensus       102 qrv~laral~--~~p~illlDEPt~~LD~-------------~~~~~l~~~l~~~---~~~-g~tiii~th~~~  156 (173)
T cd03230         102 QRLALAQALL--HDPELLILDEPTSGLDP-------------ESRREFWELLREL---KKE-GKTILLSSHILE  156 (173)
T ss_pred             HHHHHHHHHH--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHH---HHC-CCEEEEECCCHH
Confidence               3344443  47899999998766530             1112344444444   444 889999999653

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.30  E-value=9.9e-12  Score=106.09  Aligned_cols=139  Identities=16%  Similarity=0.162  Sum_probs=87.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-H---H-HHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S---L-AETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~---~-~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.+.| +.+...  .. .   + .+.+++.+|+..++...++.+++.
T Consensus        27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~  105 (221)
T TIGR02211        27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF-NGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA  105 (221)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHH
Confidence            57799999999999999999999999999999998654 432211  11 1   1 256889999877776677777665


Q ss_pred             HHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      .......          ..-++.+-++...... ...++  .|++|+...++++.                     ....
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  182 (221)
T TIGR02211       106 MPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-PSELS--GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD  182 (221)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCC--HHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH
Confidence            4211100          0001111122111111 12233  38888888888872                     2333


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|..++++.+.+||+++|-..
T Consensus       183 ~l~~~~~~~~~tii~~tH~~~  203 (221)
T TIGR02211       183 LMLELNRELNTSFLVVTHDLE  203 (221)
T ss_pred             HHHHHHHhcCCEEEEEeCCHH
Confidence            444455567899999999764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.30  E-value=1.1e-11  Score=102.40  Aligned_cols=125  Identities=19%  Similarity=0.307  Sum_probs=83.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-C---CHHHHHHcCCcCCcceecCCCCHHHHH----
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-L---DPSLAETIGVKTENLLLAQPDCGEQAL----  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~---~~~~~~~~g~~~~~~~~~~~~~~~e~~----  186 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+.+.+.. .   ...+.+.+++.+|+..++...+..+++    
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l  101 (178)
T cd03229          22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL  101 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence            56699999999999999999999999998888888655432211 1   124456678888876665555555543    


Q ss_pred             --------HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          187 --------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       187 --------~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                              .+++.+.  .+++++++|....-.+         .    .-...+.+.++.+   +++.+.++++++|-..
T Consensus       102 S~G~~qr~~la~al~--~~p~llilDEP~~~LD---------~----~~~~~l~~~l~~~---~~~~~~tiii~sH~~~  162 (178)
T cd03229         102 SGGQQQRVALARALA--MDPDVLLLDEPTSALD---------P----ITRREVRALLKSL---QAQLGITVVLVTHDLD  162 (178)
T ss_pred             CHHHHHHHHHHHHHH--CCCCEEEEeCCcccCC---------H----HHHHHHHHHHHHH---HHhcCCEEEEEeCCHH
Confidence                    2334443  4789999998765542         0    1112333444443   5555899999999653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.30  E-value=1.5e-11  Score=103.16  Aligned_cols=122  Identities=17%  Similarity=0.193  Sum_probs=82.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH---
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV---  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~---  189 (271)
                      -+++|++++|.|+||+|||||++.|++..  .+..|.|.| +.+......+.+.+++.+|+..++...+..+++.+.   
T Consensus        31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~-~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~  109 (194)
T cd03213          31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI-NGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL  109 (194)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE-CCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence            56799999999999999999999999998  888888654 443322223455688888887666656766654432   


Q ss_pred             --------------HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccc
Q 024152          190 --------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV  255 (271)
Q Consensus       190 --------------~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql  255 (271)
                                    +.+.  .+++++++|....-.+.             .-.+.+.+.++.+   . +.+.+||+++|.
T Consensus       110 ~~LS~G~~qrv~laral~--~~p~illlDEP~~~LD~-------------~~~~~l~~~l~~~---~-~~~~tiii~sh~  170 (194)
T cd03213         110 RGLSGGERKRVSIALELV--SNPSLLFLDEPTSGLDS-------------SSALQVMSLLRRL---A-DTGRTIICSIHQ  170 (194)
T ss_pred             ccCCHHHHHHHHHHHHHH--cCCCEEEEeCCCcCCCH-------------HHHHHHHHHHHHH---H-hCCCEEEEEecC
Confidence                          2222  46788888887655420             1112333444433   3 348999999996


Q ss_pred             c
Q 024152          256 F  256 (271)
Q Consensus       256 ~  256 (271)
                      .
T Consensus       171 ~  171 (194)
T cd03213         171 P  171 (194)
T ss_pred             c
Confidence            5

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.29  E-value=1.7e-11  Score=105.47  Aligned_cols=139  Identities=17%  Similarity=0.187  Sum_probs=86.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.|.+ ....  . .   ...+.+++.+|+..++...++.+++..
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~  105 (233)
T cd03258          27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG-TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL  105 (233)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHH
Confidence            5679999999999999999999999999999999865543 3211  1 1   235668899998877766777776654


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......          ..-+..+-++...... ...++  .|++|+...++++.                     ...+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~  182 (233)
T cd03258         106 PLEIAGVPKAEIEERVLELLELVGLEDKADAY-PAQLS--GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL  182 (233)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH
Confidence            321100          0001111111111111 12233  37888888888773                     23334


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |..++++.+.+||+++|...
T Consensus       183 l~~~~~~~~~tvii~sH~~~  202 (233)
T cd03258         183 LRDINRELGLTIVLITHEME  202 (233)
T ss_pred             HHHHHHHcCCEEEEEeCCHH
Confidence            44445556899999999654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.29  E-value=8.5e-12  Score=106.29  Aligned_cols=139  Identities=14%  Similarity=0.176  Sum_probs=86.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.|+||+|||||++.|++...+.+|.|.+.+..... ...+.+.+++.+|+..++...++.+++.......
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~  106 (218)
T cd03266          27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY  106 (218)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc
Confidence            577999999999999999999999999999999986554322111 1244567889999887777678877765432211


Q ss_pred             h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .          ..-++.+-++...... ...++  .|++|+...++++.                     .....|..+ 
T Consensus       107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-  182 (218)
T cd03266         107 GLKGDELTARLEELADRLGMEELLDRR-VGGFS--TGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-  182 (218)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHhhh-hhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH-
Confidence            0          0001111111111111 12233  37888888888773                     222333333 


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.+.+||+++|-..
T Consensus       183 ~~~~~tii~~tH~~~  197 (218)
T cd03266         183 RALGKCILFSTHIMQ  197 (218)
T ss_pred             HHCCCEEEEEeCCHH
Confidence            345899999999763

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.29  E-value=4.2e-12  Score=108.39  Aligned_cols=137  Identities=16%  Similarity=0.151  Sum_probs=85.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.| +.....  ...+.+++.+|...++...++.+++.+......
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  102 (220)
T cd03293          26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV-DGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQG  102 (220)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHHcC
Confidence            56799999999999999999999999998888888654 432221  123457888887766666777776654322100


Q ss_pred             -------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHh
Q 024152          195 -------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLS  243 (271)
Q Consensus       195 -------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lak  243 (271)
                             .   .-+..+-++...... ...++  .|++|+...++++.                     .+...|+++.+
T Consensus       103 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~  179 (220)
T cd03293         103 VPKAEARERAEELLELVGLSGFENAY-PHQLS--GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR  179 (220)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence                   0   001111111111111 12233  38888888888873                     23334444455


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      +.+.+||+++|...
T Consensus       180 ~~~~tiii~sH~~~  193 (220)
T cd03293         180 ETGKTVLLVTHDID  193 (220)
T ss_pred             HcCCEEEEEecCHH
Confidence            67899999999764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.29  E-value=7.6e-12  Score=113.70  Aligned_cols=139  Identities=15%  Similarity=0.178  Sum_probs=89.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||+|||||++.|++...++.|.|.+.+..... .....+.+|+.+|+..++...++.+++.+...+.
T Consensus        63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~  142 (340)
T PRK13536         63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF  142 (340)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence            567999999999999999999999999999999986655432211 2345667899999988877788888776543321


Q ss_pred             hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      ...          -+..+-++...... -..++  .|++|+...++++.                     .+...|.++.
T Consensus       143 ~~~~~~~~~~~~~ll~~~~L~~~~~~~-~~~LS--~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~  219 (340)
T PRK13536        143 GMSTREIEAVIPSLLEFARLESKADAR-VSDLS--GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL  219 (340)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhCCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence            100          00111111110000 11233  37888888888873                     2233344433


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                       +.+.+||+++|...
T Consensus       220 -~~g~tilisSH~l~  233 (340)
T PRK13536        220 -ARGKTILLTTHFME  233 (340)
T ss_pred             -hCCCEEEEECCCHH
Confidence             35899999999774

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=5.5e-12  Score=116.72  Aligned_cols=146  Identities=17%  Similarity=0.172  Sum_probs=94.8

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-H----HHHHcCCcCCcce
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S----LAETIGVKTENLL  175 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~----~~~~~g~~~~~~~  175 (271)
                      ++.+++.     -+++|++++|.|+||+|||||++.|++...+.+|.|. ++.+...  .. .    +.+.++|.+|+..
T Consensus        43 ~L~~isl-----~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~-i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~  116 (400)
T PRK10070         43 GVKDASL-----AIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL-IDGVDIAKISDAELREVRRKKIAMVFQSFA  116 (400)
T ss_pred             EEEeEEE-----EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEE-ECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence            4555543     5669999999999999999999999999999999855 4443221  11 1    2346899999988


Q ss_pred             ecCCCCHHHHHHHHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------------
Q 024152          176 LAQPDCGEQALSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS-------------  232 (271)
Q Consensus       176 ~~~~~~~~e~~~~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------  232 (271)
                      +++..++.+++.+......          ..-++.+-++...... ..+++  .|++|+...++++.             
T Consensus       117 l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-~~~LS--gGq~QRv~LArAL~~~P~iLLLDEPts  193 (400)
T PRK10070        117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY-PDELS--GGMRQRVGLARALAINPDILLMDEAFS  193 (400)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-cccCC--HHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            8877888887765432110          0001222222221111 12344  38899999998883             


Q ss_pred             --------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                              .+...|.++.++.+++||+++|...
T Consensus       194 ~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~  226 (400)
T PRK10070        194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD  226 (400)
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence                    2333455555667999999999763

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.28  E-value=9.9e-12  Score=113.66  Aligned_cols=139  Identities=18%  Similarity=0.205  Sum_probs=91.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.||||+|||||++.|++...+++|.+.+.+ +...       .....+.+++.+|+..+++..++.+++.
T Consensus        19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g-~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~   97 (354)
T TIGR02142        19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG-RTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLR   97 (354)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECccCccccccchhhCCeEEEecCCccCCCCcHHHHHH
Confidence            5779999999999999999999999999999999865533 2211       1133456889999888877788888776


Q ss_pred             HHHHHHh--------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          188 LVDTLIR--------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       188 ~~~~l~~--------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      +......        ..-++.+-++.+.... ...++  .|++|+...++++.                     .....|
T Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--gGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L  174 (354)
T TIGR02142        98 YGMKRARPSERRISFERVIELLGIGHLLGRL-PGRLS--GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL  174 (354)
T ss_pred             HHhhccChhHHHHHHHHHHHHcCChhHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence            5322100        0001111122111111 12333  38899998888873                     233455


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      ..++++.++|||+++|...
T Consensus       175 ~~l~~~~g~tiiivtH~~~  193 (354)
T TIGR02142       175 ERLHAEFGIPILYVSHSLQ  193 (354)
T ss_pred             HHHHHhcCCEEEEEecCHH
Confidence            5556667999999999764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.28  E-value=1.3e-11  Score=116.22  Aligned_cols=149  Identities=19%  Similarity=0.171  Sum_probs=101.5

Q ss_pred             cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC--CCC--HHHHHHcCCcCCccee--c
Q 024152          104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALD--PSLAETIGVKTENLLL--A  177 (271)
Q Consensus       104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~--~~~--~~~~~~~g~~~~~~~~--~  177 (271)
                      +..+|.+.-  -+.+|++++|+|++|||||||++.+++...|.+|.+.|.+.+.  ...  ....+.+-+.+|+...  .
T Consensus       304 ~~Av~~VSf--~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn  381 (539)
T COG1123         304 VKAVDDVSF--DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN  381 (539)
T ss_pred             eeeeeeeee--EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence            445555544  6789999999999999999999999999999999877766541  111  1334556667776533  3


Q ss_pred             CCCCHHHHHHHHHHHHhc-----------CCccEEEEcc-hhhhcCCCccCCccchhhHHHHHHHH--------------
Q 024152          178 QPDCGEQALSLVDTLIRS-----------GSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLM--------------  231 (271)
Q Consensus       178 ~~~~~~e~~~~~~~l~~~-----------~~~~lvvID~-l~~~~~~~~l~~~~g~~~~~~~~~~l--------------  231 (271)
                      +..++.+++...-.....           .-+++|-++. +...+| +++++  |++||...+|++              
T Consensus       382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-~elSG--GQrQRvaIARALa~~P~lli~DEp~S  458 (539)
T COG1123         382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-HELSG--GQRQRVAIARALALEPKLLILDEPVS  458 (539)
T ss_pred             ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-hhcCc--chhHHHHHHHHHhcCCCEEEecCCcc
Confidence            456777665443221100           0022333332 233342 55665  999999999998              


Q ss_pred             -------HHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          232 -------SQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       232 -------~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                             +++++.|+.+-+|+|.+.+|+||-..
T Consensus       459 aLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~  491 (539)
T COG1123         459 ALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA  491 (539)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence                   46778899999999999999999763

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.28  E-value=1e-11  Score=111.26  Aligned_cols=139  Identities=15%  Similarity=0.169  Sum_probs=87.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||+|||||++.+++...+.+|.|.+.+.... ......+.+++.+|+..++...++.+++.......
T Consensus        26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  105 (303)
T TIGR01288        26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF  105 (303)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc
Confidence            57799999999999999999999999999999998665443211 11234567899999877776778877765432211


Q ss_pred             hc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 RS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      ..          .-+..+-++...... -..++  .|++|+...++++.                     .....|.+++
T Consensus       106 ~~~~~~~~~~~~~ll~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~  182 (303)
T TIGR01288       106 GMSTREIEAVIPSLLEFARLESKADVR-VALLS--GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL  182 (303)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhHhcCc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence            00          001111111111111 12233  38888888888873                     2233444443


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                       +.+.+||+++|...
T Consensus       183 -~~g~til~~sH~~~  196 (303)
T TIGR01288       183 -ARGKTILLTTHFME  196 (303)
T ss_pred             -hCCCEEEEECCCHH
Confidence             35899999999764

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=1.8e-11  Score=105.41  Aligned_cols=140  Identities=16%  Similarity=0.195  Sum_probs=86.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-H---H-HHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S---L-AETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~---~-~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.| +.+...  .. .   + .+.+++.+|+..+++..++.+++.
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  109 (233)
T PRK11629         31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF-NGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVA  109 (233)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHH
Confidence            56799999999999999999999999998888898554 433221  11 1   1 245888999877776678877765


Q ss_pred             HHHHHH-------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~-------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      +.....       .   ..-++.+-++.+.... ...++  .|++|+...++++.                     ....
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~  186 (233)
T PRK11629        110 MPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-PSELS--GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ  186 (233)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence            421110       0   0001111122111111 12233  37888888888773                     2223


Q ss_pred             HHHHHHhhcCcEEEEEcccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .|..++++.+.+||+++|....
T Consensus       187 ~l~~~~~~~g~tvii~sH~~~~  208 (233)
T PRK11629        187 LLGELNRLQGTAFLVVTHDLQL  208 (233)
T ss_pred             HHHHHHHhCCCEEEEEeCCHHH
Confidence            4444444568999999997643

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.27  E-value=1.4e-11  Score=104.45  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcce-ecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLL-LAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.+.|.+.+..  ....+.+.+++.+|... .....++.+++.....
T Consensus        23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~  102 (211)
T cd03225          23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE  102 (211)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHH
Confidence            57799999999999999999999999999999998655432211  11244567888888753 2334566666543221


Q ss_pred             HH-------hc---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152          192 LI-------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH  240 (271)
Q Consensus       192 l~-------~~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~  240 (271)
                      ..       ..   .-+..+-++...... ...++  .|++|+...++++.                     .....|.+
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~  179 (211)
T cd03225         103 NLGLPEEEIEERVEEALELVGLEGLRDRS-PFTLS--GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK  179 (211)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCcHhhhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            10       00   001111111111111 12333  38888888888873                     23334444


Q ss_pred             HHhhcCcEEEEEccccc
Q 024152          241 SLSLSQTILIFINQVFS  257 (271)
Q Consensus       241 lake~~~~Vi~~sql~~  257 (271)
                      ++++ +++||+++|...
T Consensus       180 ~~~~-~~tvi~~sH~~~  195 (211)
T cd03225         180 LKAE-GKTIIIVTHDLD  195 (211)
T ss_pred             HHHc-CCEEEEEeCCHH
Confidence            4444 899999999653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.27  E-value=4.7e-11  Score=98.25  Aligned_cols=122  Identities=22%  Similarity=0.296  Sum_probs=82.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHH------
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQA------  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~------  185 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.+.| +.+...   ...+.+.+++.+|+..++. .++.++      
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~lLS~G~  101 (173)
T cd03246          24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRL-DGADISQWDPNELGDHVGYLPQDDELFS-GSIAENILSGGQ  101 (173)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE-CCEEcccCCHHHHHhheEEECCCCcccc-CcHHHHCcCHHH
Confidence            46699999999999999999999999999999898554 433221   1234567888888876554 355543      


Q ss_pred             ---HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          186 ---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       186 ---~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                         +.+++.+.  .+++++++|....-.+.             .-.+.+.+.++.+   . +.+.+||+++|...
T Consensus       102 ~qrv~la~al~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l~~~---~-~~~~tii~~sh~~~  157 (173)
T cd03246         102 RQRLGLARALY--GNPRILVLDEPNSHLDV-------------EGERALNQAIAAL---K-AAGATRIVIAHRPE  157 (173)
T ss_pred             HHHHHHHHHHh--cCCCEEEEECCccccCH-------------HHHHHHHHHHHHH---H-hCCCEEEEEeCCHH
Confidence               33445444  47899999987765520             1112344444444   3 35899999999664

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.27  E-value=2.5e-11  Score=105.17  Aligned_cols=139  Identities=22%  Similarity=0.253  Sum_probs=87.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.| +.....   ...+...+++.+|+..++...++.+++.....
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~  101 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI-DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPK  101 (242)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHH
Confidence            57799999999999999999999999999888898654 433221   12345568888998777766788777654322


Q ss_pred             HHhc----------CCccEEEEcc--hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          192 LIRS----------GSVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       192 l~~~----------~~~~lvvID~--l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      +...          .-+..+-+..  +.... ...++  .|++|+...++++.                     .....|
T Consensus       102 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L  178 (242)
T cd03295         102 LLKWPKEKIRERADELLALVGLDPAEFADRY-PHELS--GGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF  178 (242)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcC-hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence            1100          0011111111  11110 12233  48888888888873                     233344


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      ..++++.+.+||+++|-..
T Consensus       179 ~~~~~~~g~tvii~sH~~~  197 (242)
T cd03295         179 KRLQQELGKTIVFVTHDID  197 (242)
T ss_pred             HHHHHHcCCEEEEEecCHH
Confidence            4445556899999999663

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.27  E-value=1.8e-11  Score=107.08  Aligned_cols=137  Identities=14%  Similarity=0.093  Sum_probs=85.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH--H
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT--L  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~--l  192 (271)
                      -+++|++++|.|+||+|||||++.|++...+.+|.|. ++....  ..+.+.+++.+|...++...++.+++.+...  .
T Consensus        34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~-~~g~~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~  110 (257)
T PRK11247         34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL-AGTAPL--AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW  110 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEH--HHhhCceEEEecCccCCCCCcHHHHHHhcccchH
Confidence            5679999999999999999999999999999999865 444321  1334567888888766665677776543210  0


Q ss_pred             Hh--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcEE
Q 024152          193 IR--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTIL  249 (271)
Q Consensus       193 ~~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~V  249 (271)
                      ..  ..-+..+-++...... ...++  .|++|+...++++.                     .....|.+++++.+.+|
T Consensus       111 ~~~~~~~l~~~gl~~~~~~~-~~~LS--gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tv  187 (257)
T PRK11247        111 RDAALQALAAVGLADRANEW-PAALS--GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV  187 (257)
T ss_pred             HHHHHHHHHHcCChhHhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence            00  0001111111111111 12233  37888888888772                     23334455556678999


Q ss_pred             EEEccccc
Q 024152          250 IFINQVFS  257 (271)
Q Consensus       250 i~~sql~~  257 (271)
                      |+++|...
T Consensus       188 iivsHd~~  195 (257)
T PRK11247        188 LLVTHDVS  195 (257)
T ss_pred             EEEeCCHH
Confidence            99999764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.27  E-value=1.8e-11  Score=105.10  Aligned_cols=139  Identities=17%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-----HHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-----SLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-----~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.+.| +.+...  ..     .+.+.+++.+|+..++...++.+++.
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~  110 (228)
T PRK10584         32 VVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL-VGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVE  110 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE-CCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHH
Confidence            56699999999999999999999999999899998654 433211  11     11246888888877666667766654


Q ss_pred             HHHHHH-------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~-------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      ......       .   ..-+..+-++...... ...++  .|++|+...++++.                     ....
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~  187 (228)
T PRK10584        111 LPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-PAQLS--GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD  187 (228)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence            321110       0   0001111111111111 12233  37888888888773                     2233


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|.+++++.+.+||+++|-..
T Consensus       188 ~l~~~~~~~~~tii~~sH~~~  208 (228)
T PRK10584        188 LLFSLNREHGTTLILVTHDLQ  208 (228)
T ss_pred             HHHHHHHhcCCEEEEEecCHH
Confidence            444445667899999999764

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.27  E-value=2.4e-11  Score=98.37  Aligned_cols=154  Identities=18%  Similarity=0.200  Sum_probs=95.5

Q ss_pred             HHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152           73 LDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus        73 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      +.++.+.|+...                  |+.+++.-     +.||++.+|+|.+|+|||||+.+|+..+.++.|.|.|
T Consensus         9 V~~lsk~Yg~~~------------------gc~~vsF~-----l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y   65 (258)
T COG4107           9 VSGLSKLYGPGK------------------GCRDVSFD-----LYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY   65 (258)
T ss_pred             ehhhhhhhCCCc------------------Ccccccee-----ecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEE
Confidence            456777777544                  67776654     5599999999999999999999999999999999888


Q ss_pred             EcCCCCCC-----------HHHHHHcCCcCCcceecCCCCH-------H-----------HHHHHHHHHHhcCCccEEEE
Q 024152          153 IDAEHALD-----------PSLAETIGVKTENLLLAQPDCG-------E-----------QALSLVDTLIRSGSVDVVVV  203 (271)
Q Consensus       153 ~~~e~~~~-----------~~~~~~~g~~~~~~~~~~~~~~-------~-----------e~~~~~~~l~~~~~~~lvvI  203 (271)
                      ........           ..++..+|+..|++.-.-.+.+       |           ++++.+.....+-.++.--|
T Consensus        66 ~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~Ri  145 (258)
T COG4107          66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRI  145 (258)
T ss_pred             EcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccc
Confidence            76332211           1345568888887643322111       1           23333333333334444444


Q ss_pred             cchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          204 DSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       204 D~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      |.+-..+     ++  |.+|+-..++.+                     +..+..+..+..+++.++++++|-.
T Consensus       146 DD~PrtF-----SG--GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl  212 (258)
T COG4107         146 DDLPRTF-----SG--GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL  212 (258)
T ss_pred             cCccccc-----ch--HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence            4432222     21  445554444443                     2233344445789999999999854

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.27  E-value=4.6e-11  Score=100.60  Aligned_cols=141  Identities=13%  Similarity=0.110  Sum_probs=85.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|. ++.+... . ..+.+.+++.++....++..++.+++......
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~  101 (200)
T PRK13540         23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL-FERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF  101 (200)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEE-ECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc
Confidence            4669999999999999999999999999989999854 5544322 1 23456788888877666667777766543110


Q ss_pred             Hh-----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcC
Q 024152          193 IR-----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQ  246 (271)
Q Consensus       193 ~~-----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~  246 (271)
                      ..     ..-++.+-+..... .+...++  .|+.++...++++.                     .....|..+ ++.+
T Consensus       102 ~~~~~~~~~~l~~~~l~~~~~-~~~~~LS--~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~-~~~~  177 (200)
T PRK13540        102 SPGAVGITELCRLFSLEHLID-YPCGLLS--SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH-RAKG  177 (200)
T ss_pred             CcchHHHHHHHHHcCCchhhh-CChhhcC--HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-HHcC
Confidence            00     00000000111100 0011223  37888888888773                     222233333 3458


Q ss_pred             cEEEEEcccccccc
Q 024152          247 TILIFINQVFSINL  260 (271)
Q Consensus       247 ~~Vi~~sql~~~~~  260 (271)
                      .+||+++|-....-
T Consensus       178 ~tiii~sh~~~~~~  191 (200)
T PRK13540        178 GAVLLTSHQDLPLN  191 (200)
T ss_pred             CEEEEEeCCchhcc
Confidence            99999999765443

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.27  E-value=2.4e-11  Score=102.56  Aligned_cols=138  Identities=14%  Similarity=0.129  Sum_probs=82.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcce-ecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL-LAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||+|||||++.+++...+..|.|.+ +.+......+.+.+++.+|+.. .....++.+++.......
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~  100 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL-NGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL  100 (205)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc
Confidence            56799999999999999999999999999999998654 4332222334556888888753 222356766665422111


Q ss_pred             hc------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHHhhcC
Q 024152          194 RS------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSLSLSQ  246 (271)
Q Consensus       194 ~~------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~lake~~  246 (271)
                      ..      .-++.+-++...... ...++  .|++|+...++++..                     ....|..++ +.+
T Consensus       101 ~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~  176 (205)
T cd03226         101 DAGNEQAETVLKDLDLYALKERH-PLSLS--GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA-AQG  176 (205)
T ss_pred             CccHHHHHHHHHHcCCchhcCCC-chhCC--HHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCC
Confidence            00      001111111111111 12233  388888888888732                     222333333 358


Q ss_pred             cEEEEEccccc
Q 024152          247 TILIFINQVFS  257 (271)
Q Consensus       247 ~~Vi~~sql~~  257 (271)
                      .+||+++|...
T Consensus       177 ~tii~~sH~~~  187 (205)
T cd03226         177 KAVIVITHDYE  187 (205)
T ss_pred             CEEEEEeCCHH
Confidence            99999999754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.26  E-value=5.3e-12  Score=116.09  Aligned_cols=139  Identities=17%  Similarity=0.183  Sum_probs=92.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC----CC--CC-HH----HHHHcCCcCCcceecCCCCHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE----HA--LD-PS----LAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e----~~--~~-~~----~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      -+++|++++|.|+||+|||||+++|++...+..|.|. ++.+    ..  .. ..    +.+.+++.+|+..+++..++.
T Consensus        46 ~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~-idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~  124 (382)
T TIGR03415        46 DIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL-VKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVE  124 (382)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE-ECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHH
Confidence            4669999999999999999999999999999999865 4442    11  11 11    124689999998888878888


Q ss_pred             HHHHHHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152          184 QALSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------  232 (271)
Q Consensus       184 e~~~~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------  232 (271)
                      +++.+......          ..-++.+-++...... ..+++  .|++|+...++++.                     
T Consensus       125 eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-~~~LS--gGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~  201 (382)
T TIGR03415       125 ENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-PGELS--GGMQQRVGLARAFAMDADILLMDEPFSALDPLIRT  201 (382)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence            88765432100          0011222222111111 12333  38889998888883                     


Q ss_pred             HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      .+...|.++.++.+.|||+++|-..
T Consensus       202 ~l~~~L~~l~~~~~~TII~iTHdl~  226 (382)
T TIGR03415       202 QLQDELLELQAKLNKTIIFVSHDLD  226 (382)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            3444566666777999999999764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.26  E-value=1.4e-11  Score=107.23  Aligned_cols=131  Identities=15%  Similarity=0.183  Sum_probs=77.0

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      |-+.+|++++|.|+||+|||||++.|++...+..|.|.+ +..         .+++.+|........++.+++.......
T Consensus        20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~-~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~   89 (246)
T cd03237          20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELD---------TVSYKPQYIKADYEGTVRDLLSSITKDF   89 (246)
T ss_pred             CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE-CCc---------eEEEecccccCCCCCCHHHHHHHHhhhc
Confidence            368899999999999999999999999999998887554 321         3455555554434455655543221100


Q ss_pred             hc------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcC
Q 024152          194 RS------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQ  246 (271)
Q Consensus       194 ~~------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~  246 (271)
                      ..      .-+..+-++...... ...++  .|++|+...++++.                     .....|++++++.+
T Consensus        90 ~~~~~~~~~~l~~l~l~~~~~~~-~~~LS--gGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  166 (246)
T cd03237          90 YTHPYFKTEIAKPLQIEQILDRE-VPELS--GGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE  166 (246)
T ss_pred             cccHHHHHHHHHHcCCHHHhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            00      000011111111100 12233  26677777766662                     23334555566678


Q ss_pred             cEEEEEccccc
Q 024152          247 TILIFINQVFS  257 (271)
Q Consensus       247 ~~Vi~~sql~~  257 (271)
                      .+||+++|...
T Consensus       167 ~tiiivsHd~~  177 (246)
T cd03237         167 KTAFVVEHDII  177 (246)
T ss_pred             CEEEEEeCCHH
Confidence            99999999763

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.26  E-value=2e-11  Score=103.47  Aligned_cols=73  Identities=22%  Similarity=0.253  Sum_probs=55.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+.+|++++|.|+||+|||||++.|++...+..|.|.+ +.+... ....+.+++.+|+..++...++.+++...
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~   94 (210)
T cd03269          22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF-DGKPLD-IAARNRIGYLPEERGLYPKMKVIDQLVYL   94 (210)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCCchh-HHHHccEEEeccCCcCCcCCcHHHHHHHH
Confidence            56799999999999999999999999998888898554 443221 23445678888887776667777766543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.26  E-value=1.1e-11  Score=114.91  Aligned_cols=138  Identities=14%  Similarity=0.159  Sum_probs=89.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      -+++|++++|.||||+|||||++.|++...+.+|.|.+.+....  ..+.+++.+++.+|+..++...++.+++.+.+..
T Consensus        25 ~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~  104 (402)
T PRK09536         25 SVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTP  104 (402)
T ss_pred             EECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccch
Confidence            56799999999999999999999999999999998665543221  1235667789999988777777888776543211


Q ss_pred             H----h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          193 I----R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       193 ~----~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      .    .          ..-+..+-+..+.... -..++  .|++||...++++.                     +....
T Consensus       105 ~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-~~~LS--gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l  181 (402)
T PRK09536        105 HRSRFDTWTETDRAAVERAMERTGVAQFADRP-VTSLS--GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL  181 (402)
T ss_pred             hcccccCCCHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence            0    0          0001111111111111 12233  38888888888873                     23334


Q ss_pred             HHHHHhhcCcEEEEEcccc
Q 024152          238 LSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~  256 (271)
                      |.++++ .+.+||+++|-.
T Consensus       182 L~~l~~-~g~TIIivsHdl  199 (402)
T PRK09536        182 VRRLVD-DGKTAVAAIHDL  199 (402)
T ss_pred             HHHHHh-cCCEEEEEECCH
Confidence            444443 589999999965

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.26  E-value=1.2e-11  Score=106.36  Aligned_cols=142  Identities=16%  Similarity=0.149  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C--HHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +.+...  .  ....+.+++.+|+..+++..++.+++....
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  100 (230)
T TIGR03410        22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL-DGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGL  100 (230)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE-CCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHH
Confidence            56799999999999999999999999999999998655 432211  1  123456888898887776668877765433


Q ss_pred             HHHhcCCccE--EEEcc---hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152          191 TLIRSGSVDV--VVVDS---VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL  244 (271)
Q Consensus       191 ~l~~~~~~~l--vvID~---l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake  244 (271)
                      ..........  -+++.   +..........-+.|++|+...++++.                     ...+.|.+++++
T Consensus       101 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~  180 (230)
T TIGR03410       101 AALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE  180 (230)
T ss_pred             HhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc
Confidence            2211000000  00110   111111111112337888888888773                     223344444444


Q ss_pred             cCcEEEEEccccc
Q 024152          245 SQTILIFINQVFS  257 (271)
Q Consensus       245 ~~~~Vi~~sql~~  257 (271)
                      .+.+||+++|...
T Consensus       181 ~~~tii~~sH~~~  193 (230)
T TIGR03410       181 GGMAILLVEQYLD  193 (230)
T ss_pred             CCcEEEEEeCCHH
Confidence            5899999999764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.26  E-value=1.8e-11  Score=107.82  Aligned_cols=138  Identities=20%  Similarity=0.202  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH----HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP----SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~----~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.| +.+...  ..    .+.+.+++.+|+..++...++.+++..
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~  107 (269)
T PRK11831         29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF-DGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY  107 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHH
Confidence            56799999999999999999999999999998898655 432211  11    234568888888777766787777654


Q ss_pred             HHHHHhcC-----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          189 VDTLIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       189 ~~~l~~~~-----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      ........           -+..+-++...... -..++  .|++|+...++++.                     ....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~  184 (269)
T PRK11831        108 PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELS--GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK  184 (269)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence            32111000           01111111111111 12333  38888888888873                     2333


Q ss_pred             HHHHHHhhcCcEEEEEcccc
Q 024152          237 KLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~  256 (271)
                      .|..++++.+.+||+++|..
T Consensus       185 ~l~~~~~~~g~tiiivsH~~  204 (269)
T PRK11831        185 LISELNSALGVTCVVVSHDV  204 (269)
T ss_pred             HHHHHHHhcCcEEEEEecCH
Confidence            44444555689999999974

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.26  E-value=1.9e-11  Score=103.78  Aligned_cols=137  Identities=18%  Similarity=0.240  Sum_probs=84.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.| +.+...  .    ..+.+.+++.+|+..++...++.+++..
T Consensus        23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~  101 (214)
T cd03292          23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV-NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF  101 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHH
Confidence            56799999999999999999999999998888888654 433221  1    1245678899998777766777776654


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......          ..-+..+-++...... ...++  .|++|+...++++.                     .....
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~  178 (214)
T cd03292         102 ALEVTGVPPREIRKRVPAALELVGLSHKHRAL-PAELS--GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNL  178 (214)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhcC--HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence            322100          0001111111111111 12233  37888888888773                     22233


Q ss_pred             HHHHHhhcCcEEEEEcccc
Q 024152          238 LSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~  256 (271)
                      |..+. +.+.+||+++|..
T Consensus       179 l~~~~-~~~~tiiivtH~~  196 (214)
T cd03292         179 LKKIN-KAGTTVVVATHAK  196 (214)
T ss_pred             HHHHH-HcCCEEEEEeCCH
Confidence            33333 3589999999965

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.25  E-value=3.1e-11  Score=104.04  Aligned_cols=75  Identities=19%  Similarity=0.192  Sum_probs=55.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-HHH-HHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-PSL-AETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~~~-~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+.+..-. .. ..+ ...+++.+|+..++...++.+++...
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~   99 (236)
T cd03219          22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVA   99 (236)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHH
Confidence            56799999999999999999999999999888898654332211 11 122 34578888888777777887776543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=1.8e-11  Score=105.38  Aligned_cols=139  Identities=18%  Similarity=0.211  Sum_probs=84.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .+.+|++++|.|+||+|||||++.+++...+.+|.|.| +.+.... ....+.+++.+|+..++...++.+++.......
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~   99 (232)
T PRK10771         21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL-NGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG   99 (232)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc
Confidence            67799999999999999999999999999999998654 4332211 112346788888776666567666554321000


Q ss_pred             -------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 -------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                             .   ..-++.+-++...... ...++  .|++|+...++++.                     ...+.|..++
T Consensus       100 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~  176 (232)
T PRK10771        100 LKLNAAQREKLHAIARQMGIEDLLARL-PGQLS--GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC  176 (232)
T ss_pred             cCCCHHHHHHHHHHHHHcCcHHHHhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                   0   0001111122111111 12233  37778877777762                     2333444455


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.+++||+++|...
T Consensus       177 ~~~~~tiii~sH~~~  191 (232)
T PRK10771        177 QERQLTLLMVSHSLE  191 (232)
T ss_pred             HhcCCEEEEEECCHH
Confidence            566899999999764

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.25  E-value=3.6e-11  Score=103.80  Aligned_cols=140  Identities=16%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+.+|++++|.|+||+|||||++.|++...+.+|.|.+.+.+.. ......+.+++.+|+...+...++.+++.......
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~  102 (236)
T TIGR03864        23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH  102 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc
Confidence            57799999999999999999999999999999998655332211 11222346888888866655567766654432110


Q ss_pred             h-------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 R-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~-------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      .       .   .-++.+-++...... ...+  +.|++|+...++++.                     ...+.|..++
T Consensus       103 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~L--S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  179 (236)
T TIGR03864       103 GLSRAEARERIAALLARLGLAERADDK-VREL--NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC  179 (236)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhcCC-hhhC--CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence            0       0   000111111110000 1123  337888888888773                     2334455555


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.+.+||+++|...
T Consensus       180 ~~~~~tiii~sH~~~  194 (236)
T TIGR03864       180 RDQGLSVLWATHLVD  194 (236)
T ss_pred             HhCCCEEEEEecChh
Confidence            556899999999764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=9.6e-12  Score=110.15  Aligned_cols=139  Identities=14%  Similarity=0.123  Sum_probs=87.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLL-LAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +.....   ...+.+.+++.+|+.. .+...++.+++.+..
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~  107 (279)
T PRK13650         29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII-DGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL  107 (279)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhH
Confidence            57799999999999999999999999999999998554 443221   1245567899999863 344457776665432


Q ss_pred             HHH--------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152          191 TLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS  239 (271)
Q Consensus       191 ~l~--------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~  239 (271)
                      ...        .  ..-++.+-++...... ...++  .|++|+...++++.                     .+...|.
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~  184 (279)
T PRK13650        108 ENKGIPHEEMKERVNEALELVGMQDFKERE-PARLS--GGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIK  184 (279)
T ss_pred             HhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence            110        0  0001111112111111 12233  37888888888873                     3344555


Q ss_pred             HHHhhcCcEEEEEccccc
Q 024152          240 HSLSLSQTILIFINQVFS  257 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~~  257 (271)
                      .++++.+.|||+++|...
T Consensus       185 ~l~~~~g~tilivtH~~~  202 (279)
T PRK13650        185 GIRDDYQMTVISITHDLD  202 (279)
T ss_pred             HHHHhcCCEEEEEecCHH
Confidence            556667999999999764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.25  E-value=1.5e-11  Score=105.44  Aligned_cols=137  Identities=14%  Similarity=0.136  Sum_probs=84.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH-----hhcCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA-----QRQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~-----~~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++..     .+..|.|.+ +.+...     ...+.+.+++.+|+..++ ..++.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e   99 (227)
T cd03260          22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL-DGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYD   99 (227)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE-CCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHH
Confidence            56799999999999999999999999999     888888654 433211     123456688888887666 567777


Q ss_pred             HHHHHHHHHh-----------cCCccEEEEcchhhhcC-CCccCCccchhhHHHHHHHHH--------------------
Q 024152          185 ALSLVDTLIR-----------SGSVDVVVVDSVAALVP-KGELDGEMGDAHMAMQARLMS--------------------  232 (271)
Q Consensus       185 ~~~~~~~l~~-----------~~~~~lvvID~l~~~~~-~~~l~~~~g~~~~~~~~~~l~--------------------  232 (271)
                      ++........           ..-++.+-++....... ...++  .|++|+...++++.                    
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~  177 (227)
T cd03260         100 NVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLS--GGQQQRLCLARALANEPEVLLLDEPTSALDPIST  177 (227)
T ss_pred             HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            6654322110           00011111111111110 12333  38889988888873                    


Q ss_pred             -HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 -QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 -~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                       .....|.+++++  .+||+++|-..
T Consensus       178 ~~l~~~l~~~~~~--~tii~~sH~~~  201 (227)
T cd03260         178 AKIEELIAELKKE--YTIVIVTHNMQ  201 (227)
T ss_pred             HHHHHHHHHHhhC--cEEEEEeccHH
Confidence             233344444443  89999999754

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=2.3e-11  Score=107.67  Aligned_cols=140  Identities=14%  Similarity=0.085  Sum_probs=85.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcce-ecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLL-LAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.|.+..-.  ....+.+.+++.+|+.. .+...++.+++.+...
T Consensus        29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~  108 (279)
T PRK13635         29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLE  108 (279)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHh
Confidence            57799999999999999999999999999999998665442211  11244567889988762 3334566666544221


Q ss_pred             HHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152          192 LIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH  240 (271)
Q Consensus       192 l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~  240 (271)
                      ...          ..-+..+-++...... ...++  .|++++...++++.                     .+...|.+
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  185 (279)
T PRK13635        109 NIGVPREEMVERVDQALRQVGMEDFLNRE-PHRLS--GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ  185 (279)
T ss_pred             hCCCCHHHHHHHHHHHHHHcCChhhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            100          0001111111111111 12233  37777877777772                     23334445


Q ss_pred             HHhhcCcEEEEEccccc
Q 024152          241 SLSLSQTILIFINQVFS  257 (271)
Q Consensus       241 lake~~~~Vi~~sql~~  257 (271)
                      ++++.+++|++++|...
T Consensus       186 l~~~~~~tilivsH~~~  202 (279)
T PRK13635        186 LKEQKGITVLSITHDLD  202 (279)
T ss_pred             HHHcCCCEEEEEecCHH
Confidence            55666999999999764

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=1.7e-11  Score=107.75  Aligned_cols=139  Identities=18%  Similarity=0.202  Sum_probs=85.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+.+|++++|.|+||+|||||++.+++...+.+|.|.| +++..   ....+.+.+++.+|....+...++.+++.....
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  111 (265)
T PRK10575         33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL-DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRY  111 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-CCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcc
Confidence            56799999999999999999999999999888998654 43221   112345568888887655555677666543210


Q ss_pred             -HH----------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          192 -LI----------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       192 -l~----------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                       ..          .   ..-+..+-++...... ...++  .|++|+...++++.                     .+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~  188 (265)
T PRK10575        112 PWHGALGRFGAADREKVEEAISLVGLKPLAHRL-VDSLS--GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA  188 (265)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence             00          0   0001111111111111 12233  38888888888872                     2333


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|..++++.+++||+++|-..
T Consensus       189 ~l~~l~~~~~~tiii~sH~~~  209 (265)
T PRK10575        189 LVHRLSQERGLTVIAVLHDIN  209 (265)
T ss_pred             HHHHHHHhcCCEEEEEeCCHH
Confidence            455555556899999999763

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.24  E-value=1.6e-11  Score=104.21  Aligned_cols=136  Identities=15%  Similarity=0.176  Sum_probs=82.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceec--CCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~--~~~~~~e~~~~~~~l  192 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.| +.....  .+.+.+++.+|+....  ...++.+++......
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~-~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~   97 (213)
T cd03235          21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV-FGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG   97 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-CCccHH--HHHhheEEeccccccccCCCCcHHHHHHhcccc
Confidence            57799999999999999999999999999899998654 433221  3455688888876542  225666665432110


Q ss_pred             H-----------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          193 I-----------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       193 ~-----------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      .           .   ..-++.+-++...... ...++  .|++|+...++++.                     ...+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  174 (213)
T cd03235          98 HKGLFRRLSKADKAKVDEALERVGLSELADRQ-IGELS--GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL  174 (213)
T ss_pred             ccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            0           0   0001111111111111 12333  37888888888773                     23334


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |+++++ .+.+||+++|...
T Consensus       175 l~~~~~-~~~tvi~~sH~~~  193 (213)
T cd03235         175 LRELRR-EGMTILVVTHDLG  193 (213)
T ss_pred             HHHHHh-cCCEEEEEeCCHH
Confidence            444444 6899999999754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.24  E-value=3.5e-11  Score=102.19  Aligned_cols=73  Identities=25%  Similarity=0.317  Sum_probs=55.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      .+++|++++|.|+||+|||||++.|++...+..|.|.+ +.....  .    ..+.+.+++.+|+..++...++.+++..
T Consensus        24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  102 (214)
T TIGR02673        24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL  102 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHH
Confidence            57799999999999999999999999998888898654 432211  1    1245568888888776666677766554

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.24  E-value=2.2e-11  Score=102.75  Aligned_cols=73  Identities=23%  Similarity=0.299  Sum_probs=55.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---C----HHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---D----PSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~----~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.| +.+...   .    ..+.+.+++.+|...+++..++.+++.
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~   98 (206)
T TIGR03608        20 TIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL-NGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD   98 (206)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-CCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHH
Confidence            46699999999999999999999999999898898554 433311   1    123456888888877766677777665


Q ss_pred             H
Q 024152          188 L  188 (271)
Q Consensus       188 ~  188 (271)
                      +
T Consensus        99 ~   99 (206)
T TIGR03608        99 L   99 (206)
T ss_pred             H
Confidence            4

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.24  E-value=1.7e-11  Score=105.57  Aligned_cols=139  Identities=17%  Similarity=0.207  Sum_probs=85.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|+|+||+|||||++.+++...+..|.|.+ +++.... ....+.+++.+++...+...++.+++.+.....
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~-~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~  100 (232)
T cd03300          22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL-DGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK  100 (232)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc
Confidence            46699999999999999999999999999998888654 4332211 122456788888877766667776655332110


Q ss_pred             --------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 --------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 --------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                              .  ..-.+.+-++...... ...+  +.|++++...++++.                     .....|..+.
T Consensus       101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~l--S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~  177 (232)
T cd03300         101 KLPKAEIKERVAEALDLVQLEGYANRK-PSQL--SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ  177 (232)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhcCC-hhhC--CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                    0  0001111122111111 1223  337888888888773                     2223444444


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.+++||+++|...
T Consensus       178 ~~~~~tiii~sh~~~  192 (232)
T cd03300         178 KELGITFVFVTHDQE  192 (232)
T ss_pred             HHcCCEEEEEeCCHH
Confidence            556899999998764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.24  E-value=1.5e-11  Score=105.00  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=85.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH--HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP--SLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      .+++|++++|+|+||+|||||++.+++...+..|.|.+.+.... ...  ...+.+++.+|...++...++.+++.....
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~  101 (222)
T cd03224          22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAY  101 (222)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhh
Confidence            57799999999999999999999999999999998655432211 111  224458888988777766777776654322


Q ss_pred             HHhcCCcc--E-EEEcch---hhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152          192 LIRSGSVD--V-VVVDSV---AALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL  244 (271)
Q Consensus       192 l~~~~~~~--l-vvID~l---~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake  244 (271)
                      ........  . -+++.+   ..........-+.|++|+...++++.                     .....|..++ +
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~  180 (222)
T cd03224         102 ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR-D  180 (222)
T ss_pred             hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH-H
Confidence            11000000  0 001111   11111111112337888888888872                     2333444433 3


Q ss_pred             cCcEEEEEccccc
Q 024152          245 SQTILIFINQVFS  257 (271)
Q Consensus       245 ~~~~Vi~~sql~~  257 (271)
                      .+.+||+++|...
T Consensus       181 ~~~tiii~sH~~~  193 (222)
T cd03224         181 EGVTILLVEQNAR  193 (222)
T ss_pred             CCCEEEEEeCCHH
Confidence            6899999999654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.24  E-value=1.5e-11  Score=110.09  Aligned_cols=139  Identities=16%  Similarity=0.215  Sum_probs=87.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||+|||||++.+++...++.|.|.+.+...... ....+.+++.+|...++...++.+++.+...+.
T Consensus        24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~  103 (301)
T TIGR03522        24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY  103 (301)
T ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence            5679999999999999999999999999999999865544222111 244567899999988777778888776543321


Q ss_pred             hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------HHHHHHHHHHh
Q 024152          194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------QALRKLSHSLS  243 (271)
Q Consensus       194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~~~r~L~~lak  243 (271)
                      ...          -+..+-++...... -..++  .|++|+...++++.                    +.+..+.+..+
T Consensus       104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~  180 (301)
T TIGR03522       104 GMKGQLLKQRVEEMIELVGLRPEQHKK-IGQLS--KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG  180 (301)
T ss_pred             CCCHHHHHHHHHHHHHHCCCchHhcCc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence            000          01111111111111 12233  37888888888773                    22222222233


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      + +.+||++||...
T Consensus       181 ~-~~tiii~sH~l~  193 (301)
T TIGR03522       181 K-DKTIILSTHIMQ  193 (301)
T ss_pred             C-CCEEEEEcCCHH
Confidence            3 689999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.24  E-value=2.6e-11  Score=102.71  Aligned_cols=138  Identities=21%  Similarity=0.226  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+++|++++|.|+||+|||||+..+++...+..|.|.| +.+........+.+++.++........++.+++........
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~  102 (207)
T PRK13539         24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL-DGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG  102 (207)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC
Confidence            56799999999999999999999999998888898654 43322111245567777766555555677776554322110


Q ss_pred             cCC------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCc
Q 024152          195 SGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQT  247 (271)
Q Consensus       195 ~~~------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~  247 (271)
                      ...      ++.+-+..+.... ...++  .|++|+...++++.                     .....|..++ +.+.
T Consensus       103 ~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~  178 (207)
T PRK13539        103 GEELDIAAALEAVGLAPLAHLP-FGYLS--AGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL-AQGG  178 (207)
T ss_pred             CcHHHHHHHHHHcCCHHHHcCC-hhhcC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCC
Confidence            000      0111111111111 12233  37788887777763                     2233444343 3489


Q ss_pred             EEEEEccccc
Q 024152          248 ILIFINQVFS  257 (271)
Q Consensus       248 ~Vi~~sql~~  257 (271)
                      +||+++|...
T Consensus       179 tiii~sH~~~  188 (207)
T PRK13539        179 IVIAATHIPL  188 (207)
T ss_pred             EEEEEeCCch
Confidence            9999999764

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=99.24  E-value=1.7e-10  Score=99.91  Aligned_cols=129  Identities=17%  Similarity=0.283  Sum_probs=80.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhh------------cCCeEEEEcCCCCCCH--HHHHH----cCCc--CCccee--
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQR------------QGGYCVFIDAEHALDP--SLAET----IGVK--TENLLL--  176 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~------------~~g~v~~~~~e~~~~~--~~~~~----~g~~--~~~~~~--  176 (271)
                      |.+.+|+|+||+|||+|+++++..++.            ..++|+|++.|+....  .+...    ++..  .+++..  
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~   80 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS   80 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence            678999999999999999999987652            4568999999987653  11111    2111  111111  


Q ss_pred             --------cC---CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 024152          177 --------AQ---PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLS  245 (271)
Q Consensus       177 --------~~---~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~  245 (271)
                              ..   .....++..+.+. ....++++++||++..+....+       ...    ......+..|.+++++.
T Consensus        81 g~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~lvviDpl~~~~~~~~-------~d~----~~~~~~~~~L~~~a~~~  148 (239)
T cd01125          81 GRIQPISIAREGRIIVVPEFERIIEQ-LLIRRIDLVVIDPLVSFHGVSE-------NDN----GAMDAVIKALRRIAAQT  148 (239)
T ss_pred             cCCCceecccCCcccccHHHHHHHHH-HHhcCCCEEEECChHHhCCCCc-------CCH----HHHHHHHHHHHHHHHHh
Confidence                    11   0112233233332 2246899999999887632111       111    22334566667778899


Q ss_pred             CcEEEEEccccccc
Q 024152          246 QTILIFINQVFSIN  259 (271)
Q Consensus       246 ~~~Vi~~sql~~~~  259 (271)
                      +++|++++|..+..
T Consensus       149 g~avl~v~H~~K~~  162 (239)
T cd01125         149 GAAILLVHHVRKGS  162 (239)
T ss_pred             CCEEEEEeccCccc
Confidence            99999999998654

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.24  E-value=4.1e-11  Score=100.31  Aligned_cols=124  Identities=16%  Similarity=0.145  Sum_probs=80.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      -+++|++++|.|+||+|||||++.+++...  +..|.+. ++.+... ..+.+.+++.+|...++...++.+++......
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~-~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  106 (192)
T cd03232          29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL-INGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL  106 (192)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE-ECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence            567999999999999999999999998653  5677754 5443322 33455688888877666666777766542210


Q ss_pred             --H-------------hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          193 --I-------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       193 --~-------------~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                        .             --.+++++++|....-.+.             .-.+.+.+.++.+   + +.+.+||+++|...
T Consensus       107 ~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~-------------~~~~~l~~~l~~~---~-~~~~tiiivtH~~~  169 (192)
T cd03232         107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS-------------QAAYNIVRFLKKL---A-DSGQAILCTIHQPS  169 (192)
T ss_pred             hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH-------------HHHHHHHHHHHHH---H-HcCCEEEEEEcCCh
Confidence              0             0146788888876655420             1112233333333   3 35899999999754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.24  E-value=1.7e-11  Score=104.18  Aligned_cols=138  Identities=21%  Similarity=0.257  Sum_probs=85.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++ ++++|.|+||+|||||++.+++...+..|.|.+ +.+...       .....+.+++.+|...++...++.+++.
T Consensus        20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~   97 (214)
T cd03297          20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-NGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLA   97 (214)
T ss_pred             EEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHH
Confidence            4669 999999999999999999999999989998654 433211       1123456888888877766677777655


Q ss_pred             HHHHH-----Hh---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          188 LVDTL-----IR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       188 ~~~~l-----~~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      .....     ..   ..-++.+-++...... ...++  .|++|+...++++.                     .....|
T Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (214)
T cd03297          98 FGLKRKRNREDRISVDELLDLLGLDHLLNRY-PAQLS--GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL  174 (214)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHcCCHhHhhcC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            32211     00   0001111111111111 12233  37888888888772                     233344


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      ..++++.+++||+++|...
T Consensus       175 ~~~~~~~~~tiii~sH~~~  193 (214)
T cd03297         175 KQIKKNLNIPVIFVTHDLS  193 (214)
T ss_pred             HHHHHHcCcEEEEEecCHH
Confidence            4555566899999999764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.24  E-value=3.6e-11  Score=103.48  Aligned_cols=137  Identities=17%  Similarity=0.215  Sum_probs=83.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH-HH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT-LI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~-l~  193 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+.....  ....++.+|...++...++.+++..... ..
T Consensus         7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~   83 (230)
T TIGR01184         7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL-EGKQITEP--GPDRMVVFQNYSLLPWLTVRENIALAVDRVL   83 (230)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEECCCC--ChhheEEecCcccCCCCCHHHHHHHHHHhcc
Confidence            46799999999999999999999999999999998655 33221111  0123677787766666777776654311 00


Q ss_pred             hc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHH
Q 024152          194 RS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHS  241 (271)
Q Consensus       194 ~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~l  241 (271)
                      ..           .-+..+-++...... ...++  .|++|+...++++.                     .+.+.|.++
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~  160 (230)
T TIGR01184        84 PDLSKSERRAIVEEHIALVGLTEAADKR-PGQLS--GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI  160 (230)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHHcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence            00           001111111111111 12233  37888888888773                     233345555


Q ss_pred             HhhcCcEEEEEccccc
Q 024152          242 LSLSQTILIFINQVFS  257 (271)
Q Consensus       242 ake~~~~Vi~~sql~~  257 (271)
                      +++.+++||+++|-..
T Consensus       161 ~~~~~~tii~~sH~~~  176 (230)
T TIGR01184       161 WEEHRVTVLMVTHDVD  176 (230)
T ss_pred             HHhcCCEEEEEeCCHH
Confidence            5667899999999763

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.24  E-value=2.1e-11  Score=104.83  Aligned_cols=137  Identities=13%  Similarity=0.152  Sum_probs=83.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HH-HHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PS-LAETIGVKTENLLLAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~-~~~~~g~~~~~~~~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+...  . .. ..+.+++.+|...++...++.+++....
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  100 (232)
T cd03218          22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL-DGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVL  100 (232)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHH
Confidence            56699999999999999999999999999999998554 433211  1 12 2345788888877776677777665432


Q ss_pred             HHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152          191 TLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS  239 (271)
Q Consensus       191 ~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~  239 (271)
                      .....          .-+..+-++...... ...++  .|++|+...++++.                     ...+.|+
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~  177 (232)
T cd03218         101 EIRGLSKKEREEKLEELLEEFHITHLRKSK-ASSLS--GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK  177 (232)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence            21100          001111111111111 12233  37888888888773                     2223333


Q ss_pred             HHHhhcCcEEEEEcccc
Q 024152          240 HSLSLSQTILIFINQVF  256 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~  256 (271)
                      .++ +.+.+||+++|-.
T Consensus       178 ~~~-~~~~tii~~sH~~  193 (232)
T cd03218         178 ILK-DRGIGVLITDHNV  193 (232)
T ss_pred             HHH-HCCCEEEEEeCCH
Confidence            333 4589999999965

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.24  E-value=2.9e-11  Score=102.56  Aligned_cols=73  Identities=25%  Similarity=0.295  Sum_probs=55.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +.....     ...+.+.+++.+|+..++...++.+++..
T Consensus        22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~   99 (213)
T cd03262          22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII-DGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITL   99 (213)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHh
Confidence            57799999999999999999999999999999998654 332221     12345678888988777766677776644

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=3.4e-11  Score=105.02  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C-HHH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D-PSL-AETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~-~~~-~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+.+|++++|.|+||+|||||++.|++...+..|.|.+.+..-.. . ..+ ...+++.+|+..++...++.+++..
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~  103 (255)
T PRK11300         27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLV  103 (255)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHH
Confidence            566999999999999999999999999999999986554322111 1 122 2235667888777766788777654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.23  E-value=3.9e-11  Score=104.54  Aligned_cols=139  Identities=17%  Similarity=0.252  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC------------C----HHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~------------~----~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|++++|.|+||+|||||++.|++...+.+|.|.+ +.+...            .    ..+.+.+++.+|+..++.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~  100 (252)
T TIGR03005        22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV-EGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFP  100 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEEccccccccccccccchhHHHHHhhCeEEEecCcccCC
Confidence            57799999999999999999999999999898898654 432211            0    133556888888877776


Q ss_pred             CCCHHHHHHHHHHHHh-----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152          179 PDCGEQALSLVDTLIR-----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------  232 (271)
Q Consensus       179 ~~~~~e~~~~~~~l~~-----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------  232 (271)
                      ..++.+++........           ..-++.+-++.+.... ...++  .|++|+...++++.               
T Consensus       101 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEP~~~L  177 (252)
T TIGR03005       101 HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-PAQLS--GGQQQRVAIARALAMRPKVMLFDEVTSAL  177 (252)
T ss_pred             CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-hhhcC--HHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence            6777776654211000           0001111112111111 12233  37888888888873               


Q ss_pred             ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 ------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                            .....|.+++++.+.+||+++|...
T Consensus       178 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~  208 (252)
T TIGR03005       178 DPELVGEVLNVIRRLASEHDLTMLLVTHEMG  208 (252)
T ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence                  2333444445556899999999764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.23  E-value=4.3e-11  Score=99.85  Aligned_cols=138  Identities=15%  Similarity=0.147  Sum_probs=81.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----CHHHHHHcCCcCCcce--ecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKTENLL--LAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~~~~~~~~g~~~~~~~--~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.|.+.+...    ...+.+.+++.+|+..  .+ ..++.+++.+
T Consensus        14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~   92 (190)
T TIGR01166        14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAF   92 (190)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHH
Confidence            577999999999999999999999999998888986554322111    1234556888888752  33 3566666544


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......          ..-...+-++...... ...++  .|++|+...++++.                     .....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~  169 (190)
T TIGR01166        93 GPLNLGLSEAEVERRVREALTAVGASGLRERP-THCLS--GGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI  169 (190)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            211100          0001111111111111 12233  37888888888773                     22223


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |..+ ++.+++||+++|...
T Consensus       170 l~~~-~~~~~tili~sH~~~  188 (190)
T TIGR01166       170 LRRL-RAEGMTVVISTHDVD  188 (190)
T ss_pred             HHHH-HHcCCEEEEEeeccc
Confidence            3333 345899999999643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.23  E-value=2.6e-11  Score=103.85  Aligned_cols=139  Identities=20%  Similarity=0.185  Sum_probs=85.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcc--eecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENL--LLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~--~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +.+...  .    ..+.+.+++.+|+.  .+....++.+++
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl  105 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF-DGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI  105 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHH
Confidence            57799999999999999999999999999899998654 433221  1    23455688888886  344456777765


Q ss_pred             HHHHHHHhc------------CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152          187 SLVDTLIRS------------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------  232 (271)
Q Consensus       187 ~~~~~l~~~------------~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------  232 (271)
                      .........            .-+..+-++ ...... ...++  .|++|+...++++.                     
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~  182 (228)
T cd03257         106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRY-PHELS--GGQRQRVAIARALALNPKLLIADEPTSALDVSVQA  182 (228)
T ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCC-chhcC--HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence            432211100            000111111 110111 12233  48888888888872                     


Q ss_pred             HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      .....|.+++++.+.+||+++|...
T Consensus       183 ~l~~~l~~~~~~~~~tii~~sH~~~  207 (228)
T cd03257         183 QILDLLKKLQEELGLTLLFITHDLG  207 (228)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            2333455555556899999999754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.23  E-value=6.6e-11  Score=97.19  Aligned_cols=121  Identities=22%  Similarity=0.305  Sum_probs=80.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHH------
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQA------  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~------  185 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.+. ++.+...   ...+.+.+++.+++..+++ .++.++      
T Consensus        24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~  101 (171)
T cd03228          24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-IDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQ  101 (171)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE-ECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHH
Confidence            5779999999999999999999999999999889855 4443221   1234566888888765554 355443      


Q ss_pred             ---HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          186 ---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       186 ---~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                         +.+++.+.  .+++++++|....-.+.             .-...+.+.++.+   . + +.+|++++|-..
T Consensus       102 ~~rl~la~al~--~~p~llllDEP~~gLD~-------------~~~~~l~~~l~~~---~-~-~~tii~~sh~~~  156 (171)
T cd03228         102 RQRIAIARALL--RDPPILILDEATSALDP-------------ETEALILEALRAL---A-K-GKTVIVIAHRLS  156 (171)
T ss_pred             HHHHHHHHHHh--cCCCEEEEECCCcCCCH-------------HHHHHHHHHHHHh---c-C-CCEEEEEecCHH
Confidence               33444444  47899999987655420             1112333444433   2 2 589999999654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.23  E-value=6.5e-11  Score=98.23  Aligned_cols=122  Identities=17%  Similarity=0.184  Sum_probs=81.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C--HHHHHHcCCcCCcc---eecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENL---LLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~--~~~~~~~g~~~~~~---~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.+.+ +.+...  .  ..+.+.+++.+|+.   .+....++.+++.
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~  100 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL-DGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA  100 (182)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence            67799999999999999999999999999999998654 433221  1  13345678888774   3444556766554


Q ss_pred             H--------------HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          188 L--------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       188 ~--------------~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      .              ++.+  -.+++++++|....-.+.             .-.+.+.+.++.+   . +.+.++|+++
T Consensus       101 ~~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD~-------------~~~~~l~~~l~~~---~-~~~~tiii~s  161 (182)
T cd03215         101 LSSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVDV-------------GAKAEIYRLIREL---A-DAGKAVLLIS  161 (182)
T ss_pred             HHhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCCH-------------HHHHHHHHHHHHH---H-HCCCEEEEEe
Confidence            3              2222  247899999987655420             1112344444444   3 3488999999


Q ss_pred             ccc
Q 024152          254 QVF  256 (271)
Q Consensus       254 ql~  256 (271)
                      |..
T Consensus       162 h~~  164 (182)
T cd03215         162 SEL  164 (182)
T ss_pred             CCH
Confidence            975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.23  E-value=7.3e-11  Score=100.44  Aligned_cols=73  Identities=16%  Similarity=0.117  Sum_probs=53.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      .+++|++++|.|+||+|||||++.+++...+..|.|.| +.+........+.+++.++...++...++.+++..
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~  105 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI-DGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHF  105 (214)
T ss_pred             EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEE-CCEEccchhhhhceEEeecCcccccCCcHHHHHHH
Confidence            57799999999999999999999999999999998554 43322222234457788877666555566666543

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.23  E-value=4.2e-11  Score=102.69  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=57.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~---~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|+|+||+|||||++.+++...   +..|.|.+.+ +......+.+.+++.+|+...+...++.+++.+.
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g-~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~  105 (226)
T cd03234          29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG-QPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYT  105 (226)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECC-EECChHHhcccEEEeCCCCccCcCCcHHHHHHHH
Confidence            577999999999999999999999999988   7888865543 3222234456688889887777777888777654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.23  E-value=4.5e-11  Score=101.96  Aligned_cols=74  Identities=16%  Similarity=0.159  Sum_probs=56.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.|.+.+-.. ...+.+.+++.+|+..++...++.+++..
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~   98 (220)
T cd03263          24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRF   98 (220)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHH
Confidence            577999999999999999999999999999999986654322111 13445678899988777766777776654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=5.4e-11  Score=107.66  Aligned_cols=140  Identities=19%  Similarity=0.163  Sum_probs=87.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC----HHHHHHcCCcCCcc--eecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD----PSLAETIGVKTENL--LLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~----~~~~~~~g~~~~~~--~~~~~~~~~e~~~  187 (271)
                      -+++|++++|+|+||+|||||++.|++...+..|.|.|.+.+-. ..    +.+++.+++.+|+.  .+.+..++.+++.
T Consensus        37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~  116 (327)
T PRK11308         37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE  116 (327)
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence            56699999999999999999999999999888888665432211 11    12345688888875  3444456555443


Q ss_pred             HHHHHH-----------hcCCccEEEEcc-hhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152          188 LVDTLI-----------RSGSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMS---------------------QA  234 (271)
Q Consensus       188 ~~~~l~-----------~~~~~~lvvID~-l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~  234 (271)
                      ......           ...-+..+-++. ....+ ..++++  |++||...++++.                     ++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-p~~LSg--Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i  193 (327)
T PRK11308        117 EPLLINTSLSAAERREKALAMMAKVGLRPEHYDRY-PHMFSG--GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV  193 (327)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCC-CccCCH--HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHH
Confidence            211100           000011111221 11222 134444  8999999999883                     45


Q ss_pred             HHHHHHHHhhcCcEEEEEccccc
Q 024152          235 LRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       235 ~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ++.|.++.++.+.+||+++|-..
T Consensus       194 ~~lL~~l~~~~g~til~iTHdl~  216 (327)
T PRK11308        194 LNLMMDLQQELGLSYVFISHDLS  216 (327)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHH
Confidence            55666666778999999999753

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.23  E-value=3.2e-11  Score=106.24  Aligned_cols=139  Identities=16%  Similarity=0.178  Sum_probs=87.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-H----HHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S----LAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~----~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.+.+ +++...  .. .    ..+.+++.+|...++...++.+++.
T Consensus        46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i-~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  124 (269)
T cd03294          46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI-DGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVA  124 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-CCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHH
Confidence            56699999999999999999999999999998888554 433221  11 1    2346888898877776678877765


Q ss_pred             HHHHHHh-------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~~-------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      .......       .   .-++.+-++...... ...++  .|++|+...++++.                     .+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~  201 (269)
T cd03294         125 FGLEVQGVPRAEREERAAEALELVGLEGWEHKY-PDELS--GGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQD  201 (269)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence            5322100       0   001111111111111 12333  38888888888873                     2333


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|..++++.+.+||+++|...
T Consensus       202 ~l~~~~~~~g~tiii~tH~~~  222 (269)
T cd03294         202 ELLRLQAELQKTIVFITHDLD  222 (269)
T ss_pred             HHHHHHHhcCCEEEEEeCCHH
Confidence            444445556899999999763

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.22  E-value=3.2e-11  Score=101.34  Aligned_cols=137  Identities=16%  Similarity=0.107  Sum_probs=82.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      -+.+|++++|.|+||+|||||++.+++...+..|.|. ++.+..  ....+.+.+++.++...++...++.+++......
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  100 (198)
T TIGR01189        22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR-WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAI  100 (198)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEE-ECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHH
Confidence            5669999999999999999999999999988888855 443321  1223445678888776665556777766543322


Q ss_pred             HhcC------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhc
Q 024152          193 IRSG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLS  245 (271)
Q Consensus       193 ~~~~------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~  245 (271)
                      ....      -+..+-++...... ...++  .|++++...++++.                     ...+.|..+ ++.
T Consensus       101 ~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~  176 (198)
T TIGR01189       101 HGGAQRTIEDALAAVGLTGFEDLP-AAQLS--AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH-LAR  176 (198)
T ss_pred             cCCcHHHHHHHHHHcCCHHHhcCC-hhhcC--HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-HhC
Confidence            1100      01111111111111 12233  37888888888773                     222233333 345


Q ss_pred             CcEEEEEcccc
Q 024152          246 QTILIFINQVF  256 (271)
Q Consensus       246 ~~~Vi~~sql~  256 (271)
                      +.+||+++|..
T Consensus       177 ~~tii~~sH~~  187 (198)
T TIGR01189       177 GGIVLLTTHQD  187 (198)
T ss_pred             CCEEEEEEccc
Confidence            88999999965

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.22  E-value=3.4e-11  Score=104.16  Aligned_cols=138  Identities=18%  Similarity=0.226  Sum_probs=84.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.....    . ..+.+.+++.+|+..++...++.+++.+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  101 (240)
T PRK09493         23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV-DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG  101 (240)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhH
Confidence            56799999999999999999999999999888898554 433221    1 23455688888887776667777766543


Q ss_pred             HHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          190 DTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       190 ~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......           .-+..+-++...... ...++  .|++|+...++++.                     ...+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~  178 (240)
T PRK09493        102 PLRVRGASKEEAEKQARELLAKVGLAERAHHY-PSELS--GGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV  178 (240)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCChHHHhcC-hhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            210000           001111112111111 12233  37888888888773                     22223


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |..+ ++.+.+||+++|...
T Consensus       179 l~~~-~~~~~tiii~sH~~~  197 (240)
T PRK09493        179 MQDL-AEEGMTMVIVTHEIG  197 (240)
T ss_pred             HHHH-HHcCCEEEEEeCCHH
Confidence            3333 345899999999764

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=3.5e-11  Score=105.23  Aligned_cols=137  Identities=18%  Similarity=0.134  Sum_probs=82.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.| ++.....  ....+++.+|...++...++.+++........
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~   99 (255)
T PRK11248         23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL-DGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG   99 (255)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC
Confidence            56799999999999999999999999999899998654 4322211  11246777887666665677766654321100


Q ss_pred             ----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHh
Q 024152          195 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLS  243 (271)
Q Consensus       195 ----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lak  243 (271)
                                ..-++.+-++...... ...++  .|++|+...++++.                     .....|..+++
T Consensus       100 ~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~  176 (255)
T PRK11248        100 VEKMQRLEIAHQMLKKVGLEGAEKRY-IWQLS--GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ  176 (255)
T ss_pred             CCHHHHHHHHHHHHHHcCChhHhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence                      0001111111111111 12233  37888888888773                     22233444445


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      +.+++||+++|-..
T Consensus       177 ~~g~tviivsH~~~  190 (255)
T PRK11248        177 ETGKQVLLITHDIE  190 (255)
T ss_pred             hcCCEEEEEeCCHH
Confidence            56899999999763

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.22  E-value=2.2e-11  Score=110.32  Aligned_cols=139  Identities=17%  Similarity=0.161  Sum_probs=89.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcc--eecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENL--LLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~--~~~~~~~~~e~~  186 (271)
                      -+++|++++|+|+||+|||||++.|++...+..|.|.| +++...  . .   .+.+.+++.+|+.  .+.+..++.+++
T Consensus        43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~-~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i  121 (331)
T PRK15079         43 RLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW-LGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEII  121 (331)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEE-CCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHH
Confidence            56799999999999999999999999999988898654 443321  1 1   2345688999986  345556777765


Q ss_pred             HHHHHHH---------h---cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152          187 SLVDTLI---------R---SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------  232 (271)
Q Consensus       187 ~~~~~l~---------~---~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------  232 (271)
                      .......         .   ..-++.+-++ .+...+ ..++++  |++|+...++++.                     
T Consensus       122 ~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~  198 (331)
T PRK15079        122 AEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY-PHEFSG--GQCQRIGIARALILEPKLIICDEPVSALDVSIQA  198 (331)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            4321110         0   0001112121 111222 133443  8999999999883                     


Q ss_pred             HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ++...|+.+.++.+.++|+++|-..
T Consensus       199 ~i~~lL~~l~~~~~~til~iTHdl~  223 (331)
T PRK15079        199 QVVNLLQQLQREMGLSLIFIAHDLA  223 (331)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            3445566666667999999999763

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=5.6e-11  Score=102.85  Aligned_cols=138  Identities=17%  Similarity=0.215  Sum_probs=83.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C--HHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|.|+||+|||||++.|++...+.+|.+.+ +.+...  .  ....+.+++.+|+..++...++.+++....
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  103 (241)
T PRK10895         25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII-DDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVL  103 (241)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhh
Confidence            46699999999999999999999999999999998654 433221  1  123456888898877766667777654432


Q ss_pred             HHHh-----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------HHHHHHH
Q 024152          191 TLIR-----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------QALRKLS  239 (271)
Q Consensus       191 ~l~~-----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~~~r~L~  239 (271)
                      ....           ..-+..+-++...... ...++  .|++|+...++++.                    ..+..+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  180 (241)
T PRK10895        104 QIRDDLSAEQREDRANELMEEFHIEHLRDSM-GQSLS--GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII  180 (241)
T ss_pred             hcccccCHHHHHHHHHHHHHHcCCHHHhhcc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            1100           0000111111111110 12233  37888888888773                    2222232


Q ss_pred             HHHhhcCcEEEEEcccc
Q 024152          240 HSLSLSQTILIFINQVF  256 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~  256 (271)
                      ...++.+.+||+++|..
T Consensus       181 ~~~~~~g~tiii~sH~~  197 (241)
T PRK10895        181 EHLRDSGLGVLITDHNV  197 (241)
T ss_pred             HHHHhcCCEEEEEEcCH
Confidence            23345689999999975

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=4.8e-11  Score=106.13  Aligned_cols=139  Identities=16%  Similarity=0.213  Sum_probs=86.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcce-ecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLL-LAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~-~~~~~~~~e~~~~  188 (271)
                      -+++|++++|+|+||+|||||++.+++...+..|.|.+ ++....    . ..+.+.+++.+|+.. .....++.+++.+
T Consensus        29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~  107 (287)
T PRK13637         29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIII-DGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAF  107 (287)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE-CCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHh
Confidence            57799999999999999999999999999999998554 433221    1 245667899998752 2223566666554


Q ss_pred             HHHHHh----------cCCccEEEEc--chhhhcCCCccCCccchhhHHHHHHHHH---------------------HHH
Q 024152          189 VDTLIR----------SGSVDVVVVD--SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QAL  235 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID--~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~  235 (271)
                      ......          ..-++.+-++  .+.... ...++  .|++|+...++++.                     ...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-~~~LS--gGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~  184 (287)
T PRK13637        108 GPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS-PFELS--GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL  184 (287)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH
Confidence            221100          0001111111  111111 12233  38899999988883                     233


Q ss_pred             HHHHHHHhhcCcEEEEEccccc
Q 024152          236 RKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       236 r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ..|..++++.+.|||+++|-..
T Consensus       185 ~~l~~l~~~~g~tvi~vtHd~~  206 (287)
T PRK13637        185 NKIKELHKEYNMTIILVSHSME  206 (287)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHH
Confidence            3444555666999999999763

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.22  E-value=3.1e-11  Score=101.96  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=83.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.| +.+...  .....+.+++.++...++...++.+++......
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~  101 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW-QGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRL  101 (204)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHh
Confidence            57799999999999999999999999999999998654 433221  223445677777776666666777766543221


Q ss_pred             HhcC-------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152          193 IRSG-------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL  244 (271)
Q Consensus       193 ~~~~-------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake  244 (271)
                      ....       -++.+-++...... ...++  .|++++...++++.                     ...+.|+.+. +
T Consensus       102 ~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~  177 (204)
T PRK13538        102 HGPGDDEALWEALAQVGLAGFEDVP-VRQLS--AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA-E  177 (204)
T ss_pred             cCccHHHHHHHHHHHcCCHHHhhCC-hhhcC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-H
Confidence            1000       01111111111111 12233  37788887777773                     1222333333 4


Q ss_pred             cCcEEEEEcccccc
Q 024152          245 SQTILIFINQVFSI  258 (271)
Q Consensus       245 ~~~~Vi~~sql~~~  258 (271)
                      .+.+||+++|....
T Consensus       178 ~~~tiii~sh~~~~  191 (204)
T PRK13538        178 QGGMVILTTHQDLP  191 (204)
T ss_pred             CCCEEEEEecChhh
Confidence            58899999997543

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.22  E-value=8.3e-11  Score=102.31  Aligned_cols=139  Identities=19%  Similarity=0.193  Sum_probs=84.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----------CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----------DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----------~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+.+.+-..          ...+.+.+++.+|+..+++..++.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  104 (250)
T PRK11264         25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLE  104 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHH
Confidence            577999999999999999999999999988888885543321110          0234556888898877776677777


Q ss_pred             HHHHHHHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------H
Q 024152          185 ALSLVDTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------Q  233 (271)
Q Consensus       185 ~~~~~~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~  233 (271)
                      ++.........           .-+..+-++...... ...++  .|++|+...++++.                    .
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~  181 (250)
T PRK11264        105 NIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSY-PRRLS--GGQQQRVAIARALAMRPEVILFDEPTSALDPELVG  181 (250)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC-hhhCC--hHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            66542211000           001111111111111 12233  38888888888873                    1


Q ss_pred             -HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 -ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 -~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                       ....|..++ +.+.+||+++|-..
T Consensus       182 ~l~~~l~~~~-~~~~tvi~~tH~~~  205 (250)
T PRK11264        182 EVLNTIRQLA-QEKRTMVIVTHEMS  205 (250)
T ss_pred             HHHHHHHHHH-hcCCEEEEEeCCHH
Confidence             222333333 45899999999763

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.21  E-value=4.3e-11  Score=102.66  Aligned_cols=140  Identities=14%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+ +.+...  . ..+.+.+++.+|...+++ .++.+++.+...
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~  106 (225)
T PRK10247         29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF-EGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQ  106 (225)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE-CCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHh
Confidence            57799999999999999999999999998889998654 433211  1 234567888888876664 477776554221


Q ss_pred             HHhcC--------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          192 LIRSG--------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       192 l~~~~--------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      +....        -++.+-++.  .........-+.|++++...++++.                     .....|..+.
T Consensus       107 ~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  184 (225)
T PRK10247        107 IRNQQPDPAIFLDDLERFALPD--TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV  184 (225)
T ss_pred             hcCCChHHHHHHHHHHHcCCCh--HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            11000        011111110  0011111122347888888888873                     2223444445


Q ss_pred             hhcCcEEEEEcccccc
Q 024152          243 SLSQTILIFINQVFSI  258 (271)
Q Consensus       243 ke~~~~Vi~~sql~~~  258 (271)
                      ++.+.+||+++|-...
T Consensus       185 ~~~~~tvii~sh~~~~  200 (225)
T PRK10247        185 REQNIAVLWVTHDKDE  200 (225)
T ss_pred             HhcCCEEEEEECChHH
Confidence            5668999999997643

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.21  E-value=8.4e-11  Score=95.92  Aligned_cols=116  Identities=16%  Similarity=0.263  Sum_probs=77.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C--HHHHHHcCCcCCcceecCCCCHH--HHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPDCGE--QALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~--~~~~~~~g~~~~~~~~~~~~~~~--e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+...  .  ....+.+++.++       .+.-  +-+.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~-~g~~~~~~~~~~~~~~~i~~~~q-------LS~G~~qrl~l   93 (163)
T cd03216          22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV-DGKEVSFASPRDARRAGIAMVYQ-------LSVGERQMVEI   93 (163)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCEECCcCCHHHHHhcCeEEEEe-------cCHHHHHHHHH
Confidence            57799999999999999999999999999999998554 433221  1  122334565554       4433  34455


Q ss_pred             HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          189 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       189 ~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ++.+.  .+++++++|+...-.+         .    .-.+.+.+.++.+   . +.+.+||+++|...
T Consensus        94 aral~--~~p~illlDEP~~~LD---------~----~~~~~l~~~l~~~---~-~~~~tiii~sh~~~  143 (163)
T cd03216          94 ARALA--RNARLLILDEPTAALT---------P----AEVERLFKVIRRL---R-AQGVAVIFISHRLD  143 (163)
T ss_pred             HHHHh--cCCCEEEEECCCcCCC---------H----HHHHHHHHHHHHH---H-HCCCEEEEEeCCHH
Confidence            66665  4789999998765542         0    1123344444444   3 34889999999754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.21  E-value=3.7e-11  Score=101.27  Aligned_cols=74  Identities=19%  Similarity=0.174  Sum_probs=54.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.+.+.... ....+.+.+++.+|+..+....++.+++..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~   96 (201)
T cd03231          22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF   96 (201)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHh
Confidence            57799999999999999999999999999999998654332211 123445667888877666555666665543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.21  E-value=6e-11  Score=99.50  Aligned_cols=72  Identities=15%  Similarity=0.055  Sum_probs=51.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|. ++...... ...+.+++.++...+....++.+++..
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~i~~-~~~~~~~~~~~~~~~~~~~tv~~~l~~   93 (195)
T PRK13541         22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIY-YKNCNINN-IAKPYCTYIGHNLGLKLEMTVFENLKF   93 (195)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCcccCh-hhhhhEEeccCCcCCCccCCHHHHHHH
Confidence            5779999999999999999999999999999999855 44432221 112346677766555555676666544

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.21  E-value=6.6e-11  Score=103.97  Aligned_cols=139  Identities=19%  Similarity=0.183  Sum_probs=85.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|+|+||+|||||++.|++...+..|.+.| +.+..   ....+...+++.+|+..++...++.+++.....
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~  107 (265)
T PRK10253         29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL-DGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRY  107 (265)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE-CCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcc
Confidence            56699999999999999999999999999888898654 43321   122345568888888766655677666543210


Q ss_pred             -----------HHh---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          192 -----------LIR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       192 -----------l~~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                                 ...   ..-+..+-++...... -..++  .|++|+...++++.                     ...+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~  184 (265)
T PRK10253        108 PHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-VDTLS--GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLE  184 (265)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-cccCC--hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence                       000   0001111111111111 12233  37888888888873                     2333


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|..++++.+.+||+++|...
T Consensus       185 ~L~~l~~~~~~tiii~tH~~~  205 (265)
T PRK10253        185 LLSELNREKGYTLAAVLHDLN  205 (265)
T ss_pred             HHHHHHHhcCCEEEEEeCCHH
Confidence            444445556899999999764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=3.2e-11  Score=106.55  Aligned_cols=138  Identities=14%  Similarity=0.165  Sum_probs=83.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLL-LAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.| ++....   ...+.+.+++.+|+.. .....++.+++.+..
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~  105 (274)
T PRK13647         27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV-MGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGP  105 (274)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE-CCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhH
Confidence            56799999999999999999999999999999998654 433221   1344567899998752 223356666665422


Q ss_pred             HHH--------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152          191 TLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS  239 (271)
Q Consensus       191 ~l~--------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~  239 (271)
                      ...        .  ..-+..+-+....... ...++  .|++|+...++++.                     .....|.
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~  182 (274)
T PRK13647        106 VNMGLDKDEVERRVEEALKAVRMWDFRDKP-PYHLS--YGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILD  182 (274)
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence            110        0  0001111111111111 12233  37888888888873                     2333444


Q ss_pred             HHHhhcCcEEEEEccccc
Q 024152          240 HSLSLSQTILIFINQVFS  257 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~~  257 (271)
                      ++++ .++|||+++|...
T Consensus       183 ~~~~-~g~tili~tH~~~  199 (274)
T PRK13647        183 RLHN-QGKTVIVATHDVD  199 (274)
T ss_pred             HHHH-CCCEEEEEeCCHH
Confidence            4444 4899999999764

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=7.3e-11  Score=102.24  Aligned_cols=139  Identities=17%  Similarity=0.144  Sum_probs=83.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+.+.+-.  ....+.+.+++.+|+..++. .++.+++......
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~  103 (241)
T PRK14250         25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPML  103 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhh
Confidence            46699999999999999999999999999899998665432211  11234556888888866554 4666554432110


Q ss_pred             Hh------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152          193 IR------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL  244 (271)
Q Consensus       193 ~~------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake  244 (271)
                      ..      ..-+..+-++ .+.... ...++  .|++|+...++++.                     .....|..+.++
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  180 (241)
T PRK14250        104 KGEKNVDVEYYLSIVGLNKEYATRD-VKNLS--GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK  180 (241)
T ss_pred             cCcHHHHHHHHHHHcCCCHHHhhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            00      0001111111 111111 12233  38888888888773                     223344444555


Q ss_pred             cCcEEEEEccccc
Q 024152          245 SQTILIFINQVFS  257 (271)
Q Consensus       245 ~~~~Vi~~sql~~  257 (271)
                      .+.+||+++|-..
T Consensus       181 ~g~tii~~sH~~~  193 (241)
T PRK14250        181 MNLTVIWITHNME  193 (241)
T ss_pred             CCCEEEEEeccHH
Confidence            6899999999764

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.20  E-value=4.5e-11  Score=102.81  Aligned_cols=142  Identities=16%  Similarity=0.143  Sum_probs=81.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEcCCCCCC-HHHHHHcCCcCCcce--ecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALD-PSLAETIGVKTENLL--LAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~----~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~--~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+    .+|.|. ++...... ....+.+++.+|+..  +....+..+++.
T Consensus         8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~-~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~   86 (230)
T TIGR02770         8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEIL-LDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAI   86 (230)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEE-ECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHH
Confidence            4679999999999999999999999999987    788855 44432221 122346788888763  334456655443


Q ss_pred             HHHHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      ........          .-++.+-++............-+.|++|+...++++.                     ...+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~  166 (230)
T TIGR02770        87 ETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLK  166 (230)
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence            21110000          0011111110000011111112338888888888873                     2233


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|..++++.+.+||+++|...
T Consensus       167 ~l~~~~~~~~~tiii~sH~~~  187 (230)
T TIGR02770       167 LLRELRQLFGTGILLITHDLG  187 (230)
T ss_pred             HHHHHHHhcCCEEEEEeCCHH
Confidence            444455556899999999753

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.20  E-value=5e-11  Score=102.87  Aligned_cols=139  Identities=14%  Similarity=0.157  Sum_probs=85.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+.+|++++|.|+||+|||||+..+++...+..|.|.+.+ +.... ....+.+++.+++..+++..++.+++.......
T Consensus        21 ~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g-~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~   99 (235)
T cd03299          21 EVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG-KDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR   99 (235)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-EEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc
Confidence            4669999999999999999999999999999989855443 32211 123456888888877776677777665432110


Q ss_pred             -------hc---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 -------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 -------~~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                             ..   .-.+.+-+....... -..+  +.|++++...++++.                     .....|..++
T Consensus       100 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~L--S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~  176 (235)
T cd03299         100 KVDKKEIERKVLEIAEMLGIDHLLNRK-PETL--SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR  176 (235)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHHhcC-cccC--CHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence                   00   001111111111111 1122  348888888888873                     2223444445


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      .+.+++|++++|-..
T Consensus       177 ~~~~~tili~tH~~~  191 (235)
T cd03299         177 KEFGVTVLHVTHDFE  191 (235)
T ss_pred             HhcCCEEEEEecCHH
Confidence            556899999999653

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.20  E-value=6.6e-11  Score=101.16  Aligned_cols=138  Identities=16%  Similarity=0.128  Sum_probs=83.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+ +.+...  . .   .+.+.+++.+|+..++...++.+++..
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  102 (222)
T PRK10908         24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF-SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI  102 (222)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHh
Confidence            57799999999999999999999999999888898554 433211  1 1   245678888888766666677766654


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......          ..-++.+-++...... ...++  .|++|+...++++.                     .....
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  179 (222)
T PRK10908        103 PLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-PIQLS--GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL  179 (222)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-chhCC--HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence            321100          0001111111111111 12233  37888888888873                     12233


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |..+. +.+.+||+++|-..
T Consensus       180 l~~~~-~~~~tiii~sH~~~  198 (222)
T PRK10908        180 FEEFN-RVGVTVLMATHDIG  198 (222)
T ss_pred             HHHHH-HCCCEEEEEeCCHH
Confidence            44333 34889999999653

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.20  E-value=8.3e-11  Score=103.13  Aligned_cols=139  Identities=15%  Similarity=0.114  Sum_probs=84.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCC-------C-HHHHHHcCCcCCcceecCCCCHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHAL-------D-PSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~-------~-~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      -+++|++++|+|+||+|||||++.|++...+.   +|.|.| ++....       . ..+.+.+++.+|+..++...++.
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~  104 (262)
T PRK09984         26 NIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIEL-LGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVL  104 (262)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEE-CCEecccccccchhHHHHHhheEEEccccccccCCcHH
Confidence            56699999999999999999999999998865   377554 433211       1 23355688999987776666777


Q ss_pred             HHHHHHHHH---------------Hh---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------------
Q 024152          184 QALSLVDTL---------------IR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS-------------  232 (271)
Q Consensus       184 e~~~~~~~l---------------~~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------  232 (271)
                      +++......               ..   ..-+..+-++...... ...+  +.|++|+...++++.             
T Consensus       105 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~L--S~G~~qrv~laral~~~p~llllDEPt~  181 (262)
T PRK09984        105 ENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-VSTL--SGGQQQRVAIARALMQQAKVILADEPIA  181 (262)
T ss_pred             HHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-cccc--CHHHHHHHHHHHHHhcCCCEEEecCccc
Confidence            766532100               00   0001111111111111 1223  338888888888773             


Q ss_pred             --------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                              ...+.|+.++++.+.+||+++|-..
T Consensus       182 ~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~  214 (262)
T PRK09984        182 SLDPESARIVMDTLRDINQNDGITVVVTLHQVD  214 (262)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                    2333444445556899999999764

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.20  E-value=7.2e-11  Score=99.66  Aligned_cols=73  Identities=15%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~---~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|+|+||+|||||+..+++...   +.+|.+.+ +.....  .....+.+++.+|+...+...++.+++..
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i-~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  106 (202)
T cd03233          29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY-NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDF  106 (202)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE-CCEECccchhhhcceEEEEecccccCCCCcHHHHHhh
Confidence            567999999999999999999999999988   77887554 433221  12334567888887666666677776654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.20  E-value=7.2e-11  Score=101.68  Aligned_cols=59  Identities=25%  Similarity=0.338  Sum_probs=49.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----CHHHHHHcCCcCCcc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKTENL  174 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~~~~~~~~g~~~~~~  174 (271)
                      .+++|+.++|.|+||+|||||++++++.+.+.+|.| +++.....    ...+.+.+|+.+|+.
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~~vG~VfQnp   88 (235)
T COG1122          26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQKVGLVFQNP   88 (235)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhHHHhhcceEEEEECc
Confidence            688999999999999999999999999999999986 55554332    346788899999886

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=4.6e-11  Score=105.94  Aligned_cols=139  Identities=14%  Similarity=0.095  Sum_probs=84.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC---CeEEEEcCCCCCC---HHHHHHcCCcCCcce-ecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~---g~v~~~~~e~~~~---~~~~~~~g~~~~~~~-~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+..   |.| +++.+....   ..+.+.+++.+|+.. .+...++.+++.
T Consensus        29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~  107 (282)
T PRK13640         29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVA  107 (282)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHH
Confidence            577999999999999999999999999998876   664 455443221   234567888888763 344467776665


Q ss_pred             HHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      +......          ..-+..+-++...... ...++  .|++++...++++.                     ....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~  184 (282)
T PRK13640        108 FGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-PANLS--GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK  184 (282)
T ss_pred             hhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence            3221100          0001111111111111 12233  37888888888773                     2333


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|..++++.+.+||+++|...
T Consensus       185 ~l~~l~~~~g~tvli~tH~~~  205 (282)
T PRK13640        185 LIRKLKKKNNLTVISITHDID  205 (282)
T ss_pred             HHHHHHHhcCCEEEEEecCHH
Confidence            445555566899999999764

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.20  E-value=7.5e-11  Score=103.09  Aligned_cols=137  Identities=15%  Similarity=0.146  Sum_probs=85.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----------------CHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----------------DPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----------------~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|. ++.+...                ...+.+.+++.+|+..++.
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~  105 (257)
T PRK10619         27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV-VNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS  105 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEcccccccccccccccchHHHHHhhceEEEecCcccCC
Confidence            5779999999999999999999999999988888854 4443221                1234567889999877776


Q ss_pred             CCCHHHHHHHHH-HHHh----------cCCccEEEEcchh-hhcCCCccCCccchhhHHHHHHHHH--------------
Q 024152          179 PDCGEQALSLVD-TLIR----------SGSVDVVVVDSVA-ALVPKGELDGEMGDAHMAMQARLMS--------------  232 (271)
Q Consensus       179 ~~~~~e~~~~~~-~l~~----------~~~~~lvvID~l~-~~~~~~~l~~~~g~~~~~~~~~~l~--------------  232 (271)
                      ..++.+++.... .+..          ..-++.+-++... ... ...++  .|++|+...++++.              
T Consensus       106 ~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~  182 (257)
T PRK10619        106 HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY-PVHLS--GGQQQRVSIARALAMEPEVLLFDEPTSA  182 (257)
T ss_pred             CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            678777664321 1100          0001111111110 111 12333  38888888888873              


Q ss_pred             -------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 -------QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 -------~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                             ...+.|+.+ ++.+++||+++|-.
T Consensus       183 LD~~~~~~l~~~l~~l-~~~g~tiiivsH~~  212 (257)
T PRK10619        183 LDPELVGEVLRIMQQL-AEEGKTMVVVTHEM  212 (257)
T ss_pred             CCHHHHHHHHHHHHHH-HhcCCEEEEEeCCH
Confidence                   222233333 34589999999965

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.19  E-value=3.2e-11  Score=107.35  Aligned_cols=138  Identities=17%  Similarity=0.194  Sum_probs=86.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcc--eecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENL--LLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~--~~~~~~~~~e~  185 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.| +.+...       ...+++.+++.+|+.  .++ ..++.++
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~en  106 (290)
T PRK13634         29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKD  106 (290)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-CCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHH
Confidence            67799999999999999999999999999999998655 433211       124456789999875  233 3466666


Q ss_pred             HHHHHHHH--------h--cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152          186 LSLVDTLI--------R--SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q  233 (271)
Q Consensus       186 ~~~~~~l~--------~--~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~  233 (271)
                      +.+.....        .  ..-++.+-++ .+.... ...++  .|++|+...++++.                     .
T Consensus       107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~  183 (290)
T PRK13634        107 ICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS-PFELS--GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE  183 (290)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence            55432110        0  0001111121 111111 12233  38888888888873                     2


Q ss_pred             HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      +...|..++++.+.|||+++|...
T Consensus       184 l~~~L~~l~~~~g~tviiitHd~~  207 (290)
T PRK13634        184 MMEMFYKLHKEKGLTTVLVTHSME  207 (290)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHH
Confidence            334555556667999999999764

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.19  E-value=1.2e-10  Score=96.17  Aligned_cols=121  Identities=21%  Similarity=0.319  Sum_probs=81.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceecCCCCHHHH-------
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQA-------  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~-------  185 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.+. ++.....  ...+.+.+++.+|+..++. .++.++       
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i~~~LS~  101 (178)
T cd03247          24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT-LDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNLGRRFSG  101 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-ECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhhcccCCH
Confidence            5779999999999999999999999999999899865 4433211  1234556788888766553 344432       


Q ss_pred             -----HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          186 -----LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       186 -----~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                           +.+++.+.  .+++++++|....-.+.             .-.+.+.+.++.+   .  .+.+||+++|...
T Consensus       102 G~~qrv~laral~--~~p~~lllDEP~~~LD~-------------~~~~~l~~~l~~~---~--~~~tii~~sh~~~  158 (178)
T cd03247         102 GERQRLALARILL--QDAPIVLLDEPTVGLDP-------------ITERQLLSLIFEV---L--KDKTLIWITHHLT  158 (178)
T ss_pred             HHHHHHHHHHHHh--cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHH---c--CCCEEEEEecCHH
Confidence                 33445444  47899999987765420             1112333444433   2  3789999999764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.19  E-value=3e-11  Score=103.21  Aligned_cols=139  Identities=16%  Similarity=0.118  Sum_probs=87.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||+..|++...+..|.|. ++.....  .    ..+.+.+++.+|+..++...++.+++..
T Consensus        27 ~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~  105 (220)
T TIGR02982        27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK-VLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQM  105 (220)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHH
Confidence            4669999999999999999999999999888888855 4433221  1    1345678888988777766777776654


Q ss_pred             HHHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          189 VDTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       189 ~~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      .......           .-.+.+-++....   .....-+.|++|+...++++.                     ....
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~  182 (220)
T TIGR02982       106 ALELQPNLSYQEARERARAMLEAVGLGDHLD---YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE  182 (220)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHcCChhhhh---cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence            4321100           0001111111111   111112347888888888773                     2334


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|+.+.++.+.+||+++|-..
T Consensus       183 ~l~~~~~~~~~tii~~sh~~~  203 (220)
T TIGR02982       183 LMQKLAREQGCTILIVTHDNR  203 (220)
T ss_pred             HHHHHHHHcCCEEEEEeCCHH
Confidence            555555567899999999864

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.19  E-value=7.4e-11  Score=96.51  Aligned_cols=111  Identities=16%  Similarity=0.147  Sum_probs=71.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH--------
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL--------  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~--------  186 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.+.+ ...        +.+++.+|+..+. ..++.+++        
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~~~~~L   92 (166)
T cd03223          23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM-PEG--------EDLLFLPQRPYLP-LGTLREQLIYPWDDVL   92 (166)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCC--------ceEEEECCCCccc-cccHHHHhhccCCCCC
Confidence            56799999999999999999999999999888887554 321        2345555554332 22333332        


Q ss_pred             --------HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          187 --------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       187 --------~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                              .+++.+.  .+++++++|+.....+.             ...+.+.+.+       ++.+.++|+++|-..
T Consensus        93 S~G~~~rv~laral~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l-------~~~~~tiiivsh~~~  149 (166)
T cd03223          93 SGGEQQRLAFARLLL--HKPKFVFLDEATSALDE-------------ESEDRLYQLL-------KELGITVISVGHRPS  149 (166)
T ss_pred             CHHHHHHHHHHHHHH--cCCCEEEEECCccccCH-------------HHHHHHHHHH-------HHhCCEEEEEeCChh
Confidence                    3344443  46889999987665420             0112222222       233689999999753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.19  E-value=2.8e-11  Score=104.53  Aligned_cols=139  Identities=16%  Similarity=0.132  Sum_probs=82.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcC-CcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKT-ENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~-~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.+.+ +.+...  ...+.+.+++.+ +...++...++.+++.....
T Consensus        43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~  121 (236)
T cd03267          43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV-AGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA  121 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-CCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHH
Confidence            46699999999999999999999999999999998654 332211  123345677765 44445555677776544322


Q ss_pred             HHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152          192 LIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH  240 (271)
Q Consensus       192 l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~  240 (271)
                      ...          ..-.+.+-++...... -..++  .|++++...++++.                     .....|..
T Consensus       122 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  198 (236)
T cd03267         122 IYDLPPARFKKRLDELSELLDLEELLDTP-VRQLS--LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKE  198 (236)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhHhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            110          0001111111111100 11233  37788877777763                     23334444


Q ss_pred             HHhhcCcEEEEEccccc
Q 024152          241 SLSLSQTILIFINQVFS  257 (271)
Q Consensus       241 lake~~~~Vi~~sql~~  257 (271)
                      ++++.+.+||+++|...
T Consensus       199 ~~~~~~~tiiivsH~~~  215 (236)
T cd03267         199 YNRERGTTVLLTSHYMK  215 (236)
T ss_pred             HHhcCCCEEEEEecCHH
Confidence            45556899999999764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=1.2e-10  Score=103.06  Aligned_cols=139  Identities=14%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLL-LAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.| ++....   ...+.+.+++.+|+.. .....++.+++....
T Consensus        26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~  104 (277)
T PRK13652         26 IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI-RGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGP  104 (277)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHH
Confidence            56799999999999999999999999999999998654 433221   2345667888888752 222356666654322


Q ss_pred             HHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152          191 TLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS  239 (271)
Q Consensus       191 ~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~  239 (271)
                      ....          ..-.+.+-+...   ..+....-+.|++++...++++.                     ...+.|.
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~  181 (277)
T PRK13652        105 INLGLDEETVAHRVSSALHMLGLEEL---RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN  181 (277)
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCChhH---hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            1100          000111111111   11111122337788888887772                     2333444


Q ss_pred             HHHhhcCcEEEEEccccc
Q 024152          240 HSLSLSQTILIFINQVFS  257 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~~  257 (271)
                      .+.++.+++||+++|...
T Consensus       182 ~l~~~~g~tvli~tH~~~  199 (277)
T PRK13652        182 DLPETYGMTVIFSTHQLD  199 (277)
T ss_pred             HHHHhcCCEEEEEecCHH
Confidence            445556899999999764

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=1.1e-10  Score=101.05  Aligned_cols=72  Identities=19%  Similarity=0.218  Sum_probs=55.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---------CHHHHHHcCCcCCcceecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---------DPSLAETIGVKTENLLLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---------~~~~~~~~g~~~~~~~~~~~~~~~e~  185 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +.+...         ...+.+.+++.+|+...+...++.++
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~  102 (242)
T PRK11124         24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI-AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN  102 (242)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHH
Confidence            56699999999999999999999999999888898554 433210         12345578889988877766777776


Q ss_pred             HH
Q 024152          186 LS  187 (271)
Q Consensus       186 ~~  187 (271)
                      +.
T Consensus       103 i~  104 (242)
T PRK11124        103 LI  104 (242)
T ss_pred             HH
Confidence            54

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.18  E-value=1.4e-10  Score=93.44  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=53.6

Q ss_pred             cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceec
Q 024152          102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA  177 (271)
Q Consensus       102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~  177 (271)
                      ++-+-||.+--  .+.+|+.++|.||+|||||||.+++|....++.|. ++|.+|....   ..++.++.|..|...++
T Consensus        14 ~~a~il~~isl--~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~-l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf   89 (223)
T COG4619          14 GDAKILNNISL--SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDVSTLKPEAYRQQVSYCAQTPALF   89 (223)
T ss_pred             CCCeeecceee--eecCCceEEEeCCCCccHHHHHHHHHhccCCCCce-EEEcCccccccChHHHHHHHHHHHcCcccc
Confidence            34445565554  78899999999999999999999999999999997 5566554332   35566666666554443

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.18  E-value=1.8e-10  Score=95.29  Aligned_cols=111  Identities=19%  Similarity=0.222  Sum_probs=74.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCH--HHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG--EQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~--~e~~~~~~~l  192 (271)
                      -+++|++++|.|+||+|||||++.+++...+++|.|.|.+ .         .+++.+|...    .+.  .+.+.+++.+
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~---------~i~~~~q~~~----LSgGq~qrv~laral   86 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-I---------TPVYKPQYID----LSGGELQRVAIAAAL   86 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC-E---------EEEEEcccCC----CCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999865533 1         1344454432    333  3445556666


Q ss_pred             HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       193 ~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      .  .+++++++|....-.+         .    .-.+.+.+.++.+   +++.+.+|++++|...
T Consensus        87 ~--~~p~lllLDEPts~LD---------~----~~~~~l~~~l~~~---~~~~~~tiiivsH~~~  133 (177)
T cd03222          87 L--RNATFYLFDEPSAYLD---------I----EQRLNAARAIRRL---SEEGKKTALVVEHDLA  133 (177)
T ss_pred             h--cCCCEEEEECCcccCC---------H----HHHHHHHHHHHHH---HHcCCCEEEEEECCHH
Confidence            5  4689999998776552         0    1112233333333   4444589999999764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.18  E-value=6.8e-11  Score=102.34  Aligned_cols=74  Identities=20%  Similarity=0.203  Sum_probs=55.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C-H-HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D-P-SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~-~-~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+.+|++++|.|+||+|||||++.+++...+.+|.|.+.+..... . . .....+++.+|+..++...++.+++..
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~  100 (242)
T TIGR03411        24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLEL  100 (242)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHH
Confidence            577999999999999999999999999999999986554422111 1 1 223458888888777777788776654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=1.4e-10  Score=103.10  Aligned_cols=145  Identities=17%  Similarity=0.176  Sum_probs=87.2

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----C---HHHHHHcCCcCCcc--ee
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D---PSLAETIGVKTENL--LL  176 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~---~~~~~~~g~~~~~~--~~  176 (271)
                      .|+.+.-  -+++|++++|.|+||+|||||++.|++...+..|.|.| +.....    .   ..+.+.+++.+|+.  .+
T Consensus        22 ~l~~vsl--~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l   98 (286)
T PRK13646         22 AIHDVNT--EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV-DDITITHKTKDKYIRPVRKRIGMVFQFPESQL   98 (286)
T ss_pred             ceeeeEE--EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEECccccccchHHHHHhheEEEecChHhcc
Confidence            3444433  67799999999999999999999999999999998654 433221    1   24567799999975  23


Q ss_pred             cCCCCHHHHHHHHHHHH-------hc---CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-------------
Q 024152          177 AQPDCGEQALSLVDTLI-------RS---GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-------------  232 (271)
Q Consensus       177 ~~~~~~~e~~~~~~~l~-------~~---~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------  232 (271)
                      +. .++.+++.+.....       ..   .-+..+-++ ...... ...++  .|++|+...++++.             
T Consensus        99 ~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGq~qrv~laraL~~~p~illlDEPt~  174 (286)
T PRK13646         99 FE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS-PFQMS--GGQMRKIAIVSILAMNPDIIVLDEPTA  174 (286)
T ss_pred             ch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCC--HHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence            32 36666655422110       00   001111111 110111 12233  38888888888873             


Q ss_pred             --------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                              .....|..+.++.++|||+++|-..
T Consensus       175 ~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~  207 (286)
T PRK13646        175 GLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN  207 (286)
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence                    2233444444556899999999764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.17  E-value=1.2e-10  Score=102.36  Aligned_cols=139  Identities=17%  Similarity=0.198  Sum_probs=85.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcc--eecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENL--LLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~--~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.|++...+.+|.|.| +.+...  . .   .+.+.+++.+|..  .+....++.+++
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l  111 (265)
T TIGR02769        33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF-RGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII  111 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHH
Confidence            56799999999999999999999999999999998654 433221  1 1   1345688888875  344456777665


Q ss_pred             HHHHHHHh-----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152          187 SLVDTLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q  233 (271)
Q Consensus       187 ~~~~~l~~-----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~  233 (271)
                      ........           ..-+..+-++ .+.... ...++  .|++|+...++++.                     .
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS--gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~  188 (265)
T TIGR02769       112 GEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKL-PRQLS--GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV  188 (265)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            43211000           0001111121 111111 12333  38888888888873                     2


Q ss_pred             HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ..+.|..++++.+.+||+++|...
T Consensus       189 l~~~l~~~~~~~g~tiiivsH~~~  212 (265)
T TIGR02769       189 ILELLRKLQQAFGTAYLFITHDLR  212 (265)
T ss_pred             HHHHHHHHHHhcCcEEEEEeCCHH
Confidence            344555555566899999999764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.17  E-value=6e-11  Score=104.47  Aligned_cols=139  Identities=20%  Similarity=0.185  Sum_probs=81.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLL-LAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|. +++....  . ..+.+.+++.+|+.. .+...++.+++.+..
T Consensus        31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~  109 (269)
T PRK13648         31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF-YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGL  109 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhH
Confidence            5779999999999999999999999999998889855 4443221  1 244566888888753 333344444332211


Q ss_pred             HHH--------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152          191 TLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS  239 (271)
Q Consensus       191 ~l~--------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~  239 (271)
                      ...        .  ..-.+.+-++...... ...++  .|++++...++++.                     ...+.|.
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~  186 (269)
T PRK13648        110 ENHAVPYDEMHRRVSEALKQVDMLERADYE-PNALS--GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR  186 (269)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCchhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            100        0  0000111111111111 12233  37788887777763                     2333444


Q ss_pred             HHHhhcCcEEEEEccccc
Q 024152          240 HSLSLSQTILIFINQVFS  257 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~~  257 (271)
                      .++++.+.+||+++|...
T Consensus       187 ~~~~~~~~tiiivtH~~~  204 (269)
T PRK13648        187 KVKSEHNITIISITHDLS  204 (269)
T ss_pred             HHHHhcCCEEEEEecCch
Confidence            444556899999999764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.17  E-value=5.9e-11  Score=106.41  Aligned_cols=138  Identities=18%  Similarity=0.194  Sum_probs=84.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--------------------------CCHHHHHHcC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--------------------------LDPSLAETIG  168 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--------------------------~~~~~~~~~g  168 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+.+....                          ....+.+.+|
T Consensus        29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig  108 (305)
T PRK13651         29 EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVG  108 (305)
T ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceE
Confidence            56799999999999999999999999999999998665432110                          0124566789


Q ss_pred             CcCCcc--eecCCCCHHHHHHHHHHHH--------h--cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHHH--
Q 024152          169 VKTENL--LLAQPDCGEQALSLVDTLI--------R--SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQ--  233 (271)
Q Consensus       169 ~~~~~~--~~~~~~~~~e~~~~~~~l~--------~--~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~~--  233 (271)
                      +.+|+.  .++ ..++.+.+.+.....        .  ..-+..+-++ .+.... ...++  .|++|+...++++..  
T Consensus       109 ~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGqkqrvalA~aL~~~P  184 (305)
T PRK13651        109 VVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS-PFELS--GGQKRRVALAGILAMEP  184 (305)
T ss_pred             EEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCC--HHHHHHHHHHHHHHhCC
Confidence            999874  333 347766665432110        0  0001111121 111111 12233  388888888888732  


Q ss_pred             -------------------HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 -------------------ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 -------------------~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                                         ....|..+. +.++|||+++|-..
T Consensus       185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivtHd~~  226 (305)
T PRK13651        185 DFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLD  226 (305)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeeCHH
Confidence                               223333333 56999999999764

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.17  E-value=5.6e-11  Score=105.13  Aligned_cols=140  Identities=18%  Similarity=0.110  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLL-LAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~  190 (271)
                      -+.+|++++|+|+||+|||||+..+++...+..|.|.| +++...   ...+.+.+++.+|+.. .....++.+++....
T Consensus        29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~  107 (277)
T PRK13642         29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKI-DGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM  107 (277)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE-CCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhH
Confidence            56699999999999999999999999999999998654 433221   1244567888888753 344456666654321


Q ss_pred             HHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152          191 TLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS  239 (271)
Q Consensus       191 ~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~  239 (271)
                      ....          ..-...+-++.+.... ...++  .|++|+...++++.                     .....|.
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~  184 (277)
T PRK13642        108 ENQGIPREEMIKRVDEALLAVNMLDFKTRE-PARLS--GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH  184 (277)
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            1100          0001111111111111 12233  37888888888873                     2334555


Q ss_pred             HHHhhcCcEEEEEcccccc
Q 024152          240 HSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~~~  258 (271)
                      +++++.+.+||+++|-...
T Consensus       185 ~l~~~~g~tiil~sH~~~~  203 (277)
T PRK13642        185 EIKEKYQLTVLSITHDLDE  203 (277)
T ss_pred             HHHHhcCCEEEEEeCCHHH
Confidence            5566679999999997643

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.17  E-value=6.3e-11  Score=103.49  Aligned_cols=74  Identities=22%  Similarity=0.322  Sum_probs=54.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-PSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.+.+.+..-. .. ..+.+.+++.+|+..+....++.+++..
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~   99 (255)
T PRK11231         24 SLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAY   99 (255)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHh
Confidence            46699999999999999999999999998888898655432211 11 2344568888888766655677666543

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.17  E-value=2.4e-10  Score=100.11  Aligned_cols=74  Identities=27%  Similarity=0.312  Sum_probs=54.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+.+..-.  ....+.+.+++.+|+..+....++.+++..
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~   99 (258)
T PRK13548         24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAM   99 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHh
Confidence            56699999999999999999999999999899998655432211  112344567888887666555677666543

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.17  E-value=8.1e-11  Score=103.55  Aligned_cols=140  Identities=19%  Similarity=0.135  Sum_probs=81.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcce--ecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLL--LAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~--~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|+||||+|||||++.|++...+..|.|.|.+.+...  ...+.+.+++.+|+..  +.+..++.+++....
T Consensus        35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~  114 (267)
T PRK15112         35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL  114 (267)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHH
Confidence            677999999999999999999999999999999986654322111  1223345788887753  233334454443211


Q ss_pred             HHHh-----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          191 TLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       191 ~l~~-----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ....           ..-++.+-++ ...... ...++  .|++|+...++++.                     .....
T Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~  191 (267)
T PRK15112        115 RLNTDLEPEQREKQIIETLRQVGLLPDHASYY-PHMLA--PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINL  191 (267)
T ss_pred             HhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-chhcC--HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            1100           0001111111 111111 12233  37888888888773                     22334


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |..++++.+.+||+++|...
T Consensus       192 l~~~~~~~g~tviivsH~~~  211 (267)
T PRK15112        192 MLELQEKQGISYIYVTQHLG  211 (267)
T ss_pred             HHHHHHHcCcEEEEEeCCHH
Confidence            44445556899999999763

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.16  E-value=1.1e-10  Score=98.97  Aligned_cols=73  Identities=19%  Similarity=0.188  Sum_probs=55.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++| +++|.|+||+|||||++.+++...+..|.|.+.+.+.. ....+.+.+++.+|+..++...++.+++..
T Consensus        22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~   95 (211)
T cd03264          22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDY   95 (211)
T ss_pred             EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHH
Confidence            56699 99999999999999999999999999998665442211 113446678888988777666777776654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.16  E-value=1.2e-10  Score=102.77  Aligned_cols=139  Identities=16%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLL-LAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +.....  . ..+.+.+++.+|+.. .+...++.+++....
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~  109 (271)
T PRK13632         31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI-DGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL  109 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHH
Confidence            67799999999999999999999999999998898554 433221  1 244566888888753 333456766654422


Q ss_pred             HHHh-c---------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152          191 TLIR-S---------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS  239 (271)
Q Consensus       191 ~l~~-~---------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~  239 (271)
                      .... .         .-++.+-++...... -..++  .|++|+...++++.                     .....|.
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~  186 (271)
T PRK13632        110 ENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-PQNLS--GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMV  186 (271)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            1100 0         000111111111111 12233  37888888888772                     2333444


Q ss_pred             HHHhhcCcEEEEEccccc
Q 024152          240 HSLSLSQTILIFINQVFS  257 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~~  257 (271)
                      +++++.+.+||+++|...
T Consensus       187 ~~~~~~~~tiii~sH~~~  204 (271)
T PRK13632        187 DLRKTRKKTLISITHDMD  204 (271)
T ss_pred             HHHHhcCcEEEEEEechh
Confidence            445555689999999764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.16  E-value=5.5e-11  Score=105.03  Aligned_cols=138  Identities=17%  Similarity=0.222  Sum_probs=83.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----CHHHHHHcCCcCCcce-ecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKTENLL-LAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +.....    ...+.+.+++.+|+.. .+...++.+++.+.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~  102 (274)
T PRK13644         24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV-SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG  102 (274)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhh
Confidence            57799999999999999999999999999999998554 433221    1345567888888753 23335666655443


Q ss_pred             HHHH--------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          190 DTLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       190 ~~l~--------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      ....        .  ..-.+.+-++...... ...++  .|++|+...++++.                     .+...|
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l  179 (274)
T PRK13644        103 PENLCLPPIEIRKRVDRALAEIGLEKYRHRS-PKTLS--GGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERI  179 (274)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            2110        0  0001111111111111 12333  38888888888873                     223344


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      .++. +.+.+||+++|-..
T Consensus       180 ~~l~-~~g~til~~tH~~~  197 (274)
T PRK13644        180 KKLH-EKGKTIVYITHNLE  197 (274)
T ss_pred             HHHH-hCCCEEEEEecCHH
Confidence            4333 45899999999764

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.16  E-value=1.2e-10  Score=103.41  Aligned_cols=140  Identities=15%  Similarity=0.137  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---C-CHHHHHHcCCcCCcce-ecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---L-DPSLAETIGVKTENLL-LAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~-~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.+.+.+....   . ...+.+.+++.+|+.. .....++.+++...
T Consensus        28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~  107 (283)
T PRK13636         28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG  107 (283)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence            57799999999999999999999999999999998655432211   1 1245667899988753 22335666665432


Q ss_pred             HHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          190 DTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       190 ~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      .....          ..-+..+-++..   .......-+.|++|+...++++.                     .+...|
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~---~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l  184 (283)
T PRK13636        108 AVNLKLPEDEVRKRVDNALKRTGIEHL---KDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL  184 (283)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCChhh---hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            21100          000011111111   11111122337888888888772                     233445


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      ..++++.+.+|++++|...
T Consensus       185 ~~l~~~~g~tillvsH~~~  203 (283)
T PRK13636        185 VEMQKELGLTIIIATHDID  203 (283)
T ss_pred             HHHHHhCCCEEEEEecCHH
Confidence            5556666999999999764

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.15  E-value=1.2e-10  Score=100.64  Aligned_cols=142  Identities=16%  Similarity=0.168  Sum_probs=84.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+.+|++++|.|+||+|||||+..|++...+..|.|. ++.+.... ....+.+++.++....++..+..+++.......
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~-i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~  100 (237)
T TIGR00968        22 EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR-LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR  100 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc
Confidence            4669999999999999999999999999988888865 44332211 123456788888877666667776665432210


Q ss_pred             hcC-CccEEEEcch------hhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhc
Q 024152          194 RSG-SVDVVVVDSV------AALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLS  245 (271)
Q Consensus       194 ~~~-~~~lvvID~l------~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~  245 (271)
                      ... ....-.++.+      ..........-+.|+.|+...++++.                     .+...|..+.++.
T Consensus       101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~  180 (237)
T TIGR00968       101 KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV  180 (237)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            000 0000000111      01111111122347788887777773                     2233444444445


Q ss_pred             CcEEEEEccccc
Q 024152          246 QTILIFINQVFS  257 (271)
Q Consensus       246 ~~~Vi~~sql~~  257 (271)
                      +++||++||...
T Consensus       181 ~~tvli~sH~~~  192 (237)
T TIGR00968       181 HVTTVFVTHDQE  192 (237)
T ss_pred             CCEEEEEeCCHH
Confidence            899999999764

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.15  E-value=1.6e-10  Score=102.39  Aligned_cols=140  Identities=17%  Similarity=0.151  Sum_probs=83.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC----HHHHHHcCCcCCcce-ecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLL-LAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~----~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +.+....    ..+.+.+++.+|+.. .....++.+++.+.
T Consensus        32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i-~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~  110 (280)
T PRK13633         32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV-DGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG  110 (280)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhh
Confidence            57799999999999999999999999999999998554 4332221    244667888888753 12224555555432


Q ss_pred             HHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          190 DTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       190 ~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      .....          ..-++.+-+....... ...++  .|++|+...++++.                     .....|
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  187 (280)
T PRK13633        111 PENLGIPPEEIRERVDESLKKVGMYEYRRHA-PHLLS--GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI  187 (280)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            11100          0000111111111111 12233  37788888887772                     233344


Q ss_pred             HHHHhhcCcEEEEEcccccc
Q 024152          239 SHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~~  258 (271)
                      .+++++.+++||+++|....
T Consensus       188 ~~l~~~~g~tillvtH~~~~  207 (280)
T PRK13633        188 KELNKKYGITIILITHYMEE  207 (280)
T ss_pred             HHHHHhcCCEEEEEecChHH
Confidence            44555679999999997643

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.15  E-value=5e-11  Score=102.94  Aligned_cols=74  Identities=20%  Similarity=0.321  Sum_probs=55.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH--HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP--SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+.+|++++|+|+||+|||||++.+++...+.+|.|.+.+..-. ...  .+.+.+++.+|+...+...++.+++..
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  103 (237)
T PRK11614         27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAM  103 (237)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHH
Confidence            57799999999999999999999999999999998655432211 111  234568888888776666677776654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.15  E-value=2.7e-10  Score=95.00  Aligned_cols=85  Identities=26%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCC
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPD  180 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~  180 (271)
                      |=.-||.+--  -+++|++.+|.||||+|||||++.+++...+.+|.|.|++..-.  ....+++..++.+|+-.+..+.
T Consensus        13 Gr~ll~~vsl--~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF   90 (259)
T COG4559          13 GRRLLDGVSL--DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF   90 (259)
T ss_pred             cceeccCcce--eccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence            4334444433  68899999999999999999999999999999999888764322  2236788889999988887777


Q ss_pred             CHHHHHHHH
Q 024152          181 CGEQALSLV  189 (271)
Q Consensus       181 ~~~e~~~~~  189 (271)
                      ++.|++.+-
T Consensus        91 tv~eVV~mG   99 (259)
T COG4559          91 TVQEVVQMG   99 (259)
T ss_pred             EHHHHHHhc
Confidence            877776553

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.15  E-value=1.2e-10  Score=100.74  Aligned_cols=133  Identities=19%  Similarity=0.222  Sum_probs=89.9

Q ss_pred             cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CC------HHHHHHcCCcCCcc
Q 024152          104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LD------PSLAETIGVKTENL  174 (271)
Q Consensus       104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~------~~~~~~~g~~~~~~  174 (271)
                      +..+|.+--  .+.+|++++|+|.+||||||+++.+++...+.+|.|.|-+..-.   ..      ..+...+|...+.+
T Consensus        26 v~avd~Vsf--~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~  103 (268)
T COG4608          26 VKAVDGVSF--SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFL  103 (268)
T ss_pred             eEEecceeE--EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHh
Confidence            345555544  67799999999999999999999999999999998555432211   10      13344566444433


Q ss_pred             eecCC-CCH--HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEE
Q 024152          175 LLAQP-DCG--EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIF  251 (271)
Q Consensus       175 ~~~~~-~~~--~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~  251 (271)
                      ..+++ .+.  .|-+.++|.+.  .++++++.|....+.+-             ..+   ++++..|+.+-++.+.+.++
T Consensus       104 ~ryPhelSGGQrQRi~IARALa--l~P~liV~DEpvSaLDv-------------Siq---aqIlnLL~dlq~~~~lt~lF  165 (268)
T COG4608         104 YRYPHELSGGQRQRIGIARALA--LNPKLIVADEPVSALDV-------------SVQ---AQILNLLKDLQEELGLTYLF  165 (268)
T ss_pred             hcCCcccCchhhhhHHHHHHHh--hCCcEEEecCchhhcch-------------hHH---HHHHHHHHHHHHHhCCeEEE
Confidence            33322 232  35566677764  57999999998877631             111   24555566667899999999


Q ss_pred             Ecccc
Q 024152          252 INQVF  256 (271)
Q Consensus       252 ~sql~  256 (271)
                      ++|-.
T Consensus       166 IsHDL  170 (268)
T COG4608         166 ISHDL  170 (268)
T ss_pred             EEEEH
Confidence            99965

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.15  E-value=1.2e-10  Score=100.83  Aligned_cols=74  Identities=19%  Similarity=0.248  Sum_probs=53.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCC--CH-HH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~--~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.|++..  .+..|.|. ++.....  .. .. ...+++.+|+...+...++.+++..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~  100 (243)
T TIGR01978        22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL-FKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRS  100 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEE-ECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHH
Confidence            56699999999999999999999999984  57788755 4433221  11 22 2336788888777766777776654


Q ss_pred             H
Q 024152          189 V  189 (271)
Q Consensus       189 ~  189 (271)
                      .
T Consensus       101 ~  101 (243)
T TIGR01978       101 A  101 (243)
T ss_pred             H
Confidence            3

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.15  E-value=2.6e-10  Score=92.93  Aligned_cols=132  Identities=17%  Similarity=0.247  Sum_probs=89.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC------------CC----HHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA------------LD----PSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~------------~~----~~~~~~~g~~~~~~~~~~  178 (271)
                      -...|++|.|+|.+|+|||||++||...-.|..|.+ .++.|..            .+    +.++.++++.+|+++++.
T Consensus        28 ~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I-~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWs  106 (256)
T COG4598          28 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI-RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWS  106 (256)
T ss_pred             ecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE-EECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhH
Confidence            356999999999999999999999998888888874 4444321            11    256778999999999998


Q ss_pred             CCCHHHHH----------------HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH----------
Q 024152          179 PDCGEQAL----------------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS----------  232 (271)
Q Consensus       179 ~~~~~e~~----------------~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~----------  232 (271)
                      .+++-|+.                +.+..++.     .+-|+.-...|| ..+++  |++||+..+|+++          
T Consensus       107 HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~-----kVGi~ek~~~YP-~~LSG--GQQQR~aIARaLameP~vmLFDE  178 (256)
T COG4598         107 HMTVLENVIEAPVHVLGVSKAEAIERAEKYLA-----KVGIAEKADAYP-AHLSG--GQQQRVAIARALAMEPEVMLFDE  178 (256)
T ss_pred             HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHH-----HhCchhhhhcCc-cccCc--hHHHHHHHHHHHhcCCceEeecC
Confidence            88876543                22222322     222333223343 34444  8889999888873          


Q ss_pred             -----------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 -----------QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 -----------~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                                 +.++-+..+| |.|.|.++++|-+
T Consensus       179 PTSALDPElVgEVLkv~~~LA-eEgrTMv~VTHEM  212 (256)
T COG4598         179 PTSALDPELVGEVLKVMQDLA-EEGRTMVVVTHEM  212 (256)
T ss_pred             CcccCCHHHHHHHHHHHHHHH-HhCCeEEEEeeeh
Confidence                       3444444444 6677888888865

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.15  E-value=2.1e-10  Score=100.28  Aligned_cols=73  Identities=19%  Similarity=0.258  Sum_probs=54.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.| +.+..   ....+.+.+++.+|+.......++.+++..
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~   98 (256)
T TIGR03873        23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL-AGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVAL   98 (256)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-CCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHh
Confidence            56699999999999999999999999999888998654 43321   112334568888888755555677776644

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.14  E-value=8.7e-11  Score=104.44  Aligned_cols=137  Identities=16%  Similarity=0.147  Sum_probs=84.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcc--eecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENL--LLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~--~~~~~~~~~e~  185 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+ +.+...       .......+++.+|+.  .++ ..++.++
T Consensus        29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~  106 (287)
T PRK13641         29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI-AGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKD  106 (287)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHH
Confidence            57799999999999999999999999999999998554 443221       123455688888875  233 3577776


Q ss_pred             HHHHHHHHh----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152          186 LSLVDTLIR----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q  233 (271)
Q Consensus       186 ~~~~~~l~~----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~  233 (271)
                      +.+......          ..-++.+-++ .+.... ...++  .|++|+...++++.                     .
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~  183 (287)
T PRK13641        107 VEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS-PFELS--GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE  183 (287)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence            654322100          0001111111 111111 12333  38888888888873                     2


Q ss_pred             HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ....|..+ ++.+.+||+++|...
T Consensus       184 l~~~l~~l-~~~g~tvlivsH~~~  206 (287)
T PRK13641        184 MMQLFKDY-QKAGHTVILVTHNMD  206 (287)
T ss_pred             HHHHHHHH-HhCCCEEEEEeCCHH
Confidence            22233333 345899999999764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.14  E-value=1.1e-10  Score=110.14  Aligned_cols=139  Identities=19%  Similarity=0.191  Sum_probs=91.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEcCCCCC-C-----HHHHHHcCCcCCcc-eecCC-CCH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHAL-D-----PSLAETIGVKTENL-LLAQP-DCG  182 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~----~g~v~~~~~e~~~-~-----~~~~~~~g~~~~~~-~~~~~-~~~  182 (271)
                      -+.+|++++|+|.+||||||+++.+.+.....    +|.|+|.+.+... .     +.+.+.+++.+|+. ...++ +++
T Consensus        31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI  110 (539)
T COG1123          31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI  110 (539)
T ss_pred             EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence            56699999999999999999999999998876    6787766543211 1     13446678888874 22333 344


Q ss_pred             HHHH-HHHHHHH-------h---cCCccEEEEcchhh--hcCCCccCCccchhhHHHHHHHH------------------
Q 024152          183 EQAL-SLVDTLI-------R---SGSVDVVVVDSVAA--LVPKGELDGEMGDAHMAMQARLM------------------  231 (271)
Q Consensus       183 ~e~~-~~~~~l~-------~---~~~~~lvvID~l~~--~~~~~~l~~~~g~~~~~~~~~~l------------------  231 (271)
                      .+.+ +..+...       .   ..-++.|-+..-..  .+| +++++  |++||++.+.++                  
T Consensus       111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-heLSG--G~rQRv~iAmALa~~P~LLIaDEPTTaLDv  187 (539)
T COG1123         111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSG--GMRQRVMIAMALALKPKLLIADEPTTALDV  187 (539)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-cccCc--hHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence            3222 2111100       0   00122222322222  253 66666  999999999888                  


Q ss_pred             ---HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          232 ---SQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       232 ---~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                         .+++..|+.+.++.|++++++||..
T Consensus       188 t~q~qIL~llk~l~~e~g~a~l~ITHDl  215 (539)
T COG1123         188 TTQAQILDLLKDLQRELGMAVLFITHDL  215 (539)
T ss_pred             HHHHHHHHHHHHHHHHcCcEEEEEcCCH
Confidence               4678888999999999999999965

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.14  E-value=1.7e-10  Score=98.62  Aligned_cols=137  Identities=17%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+.+|++++|.|+||+|||||++.+++...+..|.|.+.+ ....... .+.+++.++...++...++.+++........
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~-~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~   99 (223)
T TIGR03740        22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-HPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG   99 (223)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-Eeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC
Confidence            4669999999999999999999999999988989865433 2211111 2357777777666655677666544322110


Q ss_pred             cC------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCc
Q 024152          195 SG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQT  247 (271)
Q Consensus       195 ~~------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~  247 (271)
                      ..      -++.+-++...... ...++  .|++++...++++.                     .....|..+ ++.+.
T Consensus       100 ~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~~  175 (223)
T TIGR03740       100 LPDSRIDEVLNIVDLTNTGKKK-AKQFS--LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSF-PEQGI  175 (223)
T ss_pred             CCHHHHHHHHHHcCCcHHHhhh-HhhCC--HHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHH-HHCCC
Confidence            00      01111111111111 11222  37777777777762                     222333333 34588


Q ss_pred             EEEEEccccc
Q 024152          248 ILIFINQVFS  257 (271)
Q Consensus       248 ~Vi~~sql~~  257 (271)
                      +||+++|...
T Consensus       176 tiii~sH~~~  185 (223)
T TIGR03740       176 TVILSSHILS  185 (223)
T ss_pred             EEEEEcCCHH
Confidence            9999999753

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.14  E-value=1.1e-10  Score=103.31  Aligned_cols=138  Identities=13%  Similarity=0.135  Sum_probs=82.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-----CC-HHHHHHcCCcCCcc--eecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-----LD-PSLAETIGVKTENL--LLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-----~~-~~~~~~~g~~~~~~--~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+.+.+..     .. ..+.+.+++.+|..  .++. .++.+++
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l  107 (280)
T PRK13649         29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDV  107 (280)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHH
Confidence            67799999999999999999999999999999998655432211     11 23456688888875  2333 4676665


Q ss_pred             HHHHHHHh----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152          187 SLVDTLIR----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QA  234 (271)
Q Consensus       187 ~~~~~l~~----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~  234 (271)
                      .+......          ..-++.+-++ .+.... ...++  .|++|+...++++.                     ..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l  184 (280)
T PRK13649        108 AFGPQNFGVSQEEAEALAREKLALVGISESLFEKN-PFELS--GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKEL  184 (280)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            44221100          0000111111 111111 12233  38888888888873                     22


Q ss_pred             HHHHHHHHhhcCcEEEEEccccc
Q 024152          235 LRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       235 ~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ...|+.+. +.+.+||+++|...
T Consensus       185 ~~~l~~~~-~~~~tiiivsH~~~  206 (280)
T PRK13649        185 MTLFKKLH-QSGMTIVLVTHLMD  206 (280)
T ss_pred             HHHHHHHH-HCCCEEEEEeccHH
Confidence            33444443 34899999999763

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.14  E-value=2.2e-10  Score=94.91  Aligned_cols=124  Identities=19%  Similarity=0.268  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcc----------eecCCCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENL----------LLAQPDC  181 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~----------~~~~~~~  181 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.| +.....  . ..+...+++.+|-+          ......+
T Consensus        21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~-~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS   99 (180)
T cd03214          21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL-DGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS   99 (180)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence            56799999999999999999999999999899998654 432211  1 12333445443210          1111223


Q ss_pred             HH--HHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          182 GE--QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       182 ~~--e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      .-  +-+.+++.+.  .+++++++|....-.+.             .-.+.+.+.++.+   .++.++++|+++|...
T Consensus       100 ~G~~qrl~laral~--~~p~llllDEP~~~LD~-------------~~~~~~~~~l~~~---~~~~~~tiii~sh~~~  159 (180)
T cd03214         100 GGERQRVLLARALA--QEPPILLLDEPTSHLDI-------------AHQIELLELLRRL---ARERGKTVVMVLHDLN  159 (180)
T ss_pred             HHHHHHHHHHHHHh--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHH---HHhcCCEEEEEeCCHH
Confidence            22  3345566655  47899999987755420             1112333334333   4555899999999764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.14  E-value=9.6e-11  Score=104.24  Aligned_cols=138  Identities=14%  Similarity=0.179  Sum_probs=84.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcc--eecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENL--LLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~--~~~~~~~~~e~  185 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|. +++....       ...+++.+++.+|+.  .++. .++.+.
T Consensus        28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~  105 (288)
T PRK13643         28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT-VGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKD  105 (288)
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE-ECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHH
Confidence            5779999999999999999999999999999999854 4443221       124566789999875  3333 466666


Q ss_pred             HHHHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152          186 LSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QA  234 (271)
Q Consensus       186 ~~~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~  234 (271)
                      +.+......          ..-++.+-++.  .+.......-+.|++|+...++++.                     ..
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l  183 (288)
T PRK13643        106 VAFGPQNFGIPKEKAEKIAAEKLEMVGLAD--EFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM  183 (288)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCCCh--hhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH
Confidence            654322100          00011111110  0111111222348888888888873                     22


Q ss_pred             HHHHHHHHhhcCcEEEEEccccc
Q 024152          235 LRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       235 ~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ...|..+. +.+.|||+++|-..
T Consensus       184 ~~~l~~l~-~~g~til~vtHd~~  205 (288)
T PRK13643        184 MQLFESIH-QSGQTVVLVTHLMD  205 (288)
T ss_pred             HHHHHHHH-HCCCEEEEEecCHH
Confidence            23333333 35899999999763

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.14  E-value=1.1e-10  Score=101.95  Aligned_cols=140  Identities=14%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEcCCCCCCH-HHHHHcCCcCCcce--ecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALDP-SLAETIGVKTENLL--LAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~----~~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~--~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+    .+|.|.+ +....... ...+.+++.+|+..  +.+..+..+...
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~-~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~  103 (254)
T PRK10418         25 TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLL-DGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHAR  103 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEE-CCeeccccccccceEEEEecCCccccCccccHHHHHH
Confidence            5669999999999999999999999999887    7888554 43322111 22345778888753  222334443322


Q ss_pred             HHHHHHh--------cCCccEEEEcchhhhcC--CCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLIR--------SGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~~--------~~~~~lvvID~l~~~~~--~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      .......        ..-++.+-++.......  -..++  .|++|+...++++.                     ....
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS--~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~  181 (254)
T PRK10418        104 ETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMS--GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD  181 (254)
T ss_pred             HHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccC--HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence            1100000        00011111111000001  12233  38888888888772                     2333


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|..++++.+.+||+++|...
T Consensus       182 ~L~~~~~~~g~til~~sH~~~  202 (254)
T PRK10418        182 LLESIVQKRALGMLLVTHDMG  202 (254)
T ss_pred             HHHHHHHhcCcEEEEEecCHH
Confidence            455556667899999999653

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.14  E-value=1.1e-10  Score=101.50  Aligned_cols=72  Identities=19%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...+.     +|.|.+ +.....     ...+.+.+++.+|+..++. .++.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  100 (247)
T TIGR00972        23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF-DGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYD  100 (247)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE-CCEEccccccchHHHHhheEEEecCcccCC-CCHHH
Confidence            57799999999999999999999999999887     888655 433221     1234567889888876666 77777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       101 ~l~~  104 (247)
T TIGR00972       101 NIAY  104 (247)
T ss_pred             HHHh
Confidence            6654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.14  E-value=1.1e-10  Score=103.00  Aligned_cols=139  Identities=11%  Similarity=0.080  Sum_probs=81.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CC-HHHHHHcCCcCCccee-cCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LD-PSLAETIGVKTENLLL-AQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~-~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.+.+....   .. ..+.+.+++.+|+... ....+..+++...
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~  102 (271)
T PRK13638         23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS  102 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHH
Confidence            56799999999999999999999999999999998654332211   11 2345668888887542 2233455544332


Q ss_pred             HHHHh-------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          190 DTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       190 ~~l~~-------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      .....       .   .-+..+-++...... ...++  .|++|+...++++.                     .....|
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l  179 (271)
T PRK13638        103 LRNLGVPEAEITRRVDEALTLVDAQHFRHQP-IQCLS--HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII  179 (271)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC-chhCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            11100       0   001111111111111 12233  38888888888873                     233344


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      +++. +.+.+||+++|...
T Consensus       180 ~~~~-~~g~tii~vtH~~~  197 (271)
T PRK13638        180 RRIV-AQGNHVIISSHDID  197 (271)
T ss_pred             HHHH-HCCCEEEEEeCCHH
Confidence            4443 35899999999763

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.14  E-value=1.9e-10  Score=98.41  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc-CC--CCC--C-HH----HHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID-AE--HAL--D-PS----LAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~-~e--~~~--~-~~----~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.|.+ .+  ...  . ..    +.+.+++.+|...+++..++.+
T Consensus        30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  109 (224)
T TIGR02324        30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALE  109 (224)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHH
Confidence            5679999999999999999999999999999899866542 21  111  1 11    2345788888877776667776


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       110 ~l~~  113 (224)
T TIGR02324       110 VVAE  113 (224)
T ss_pred             HHHH
Confidence            6543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.13  E-value=1.4e-10  Score=113.51  Aligned_cols=146  Identities=18%  Similarity=0.143  Sum_probs=93.1

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-H---HHHHHcCCcCCcc--eecCC
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-P---SLAETIGVKTENL--LLAQP  179 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~---~~~~~~g~~~~~~--~~~~~  179 (271)
                      |+.+.-  -+++|++++|+|+||||||||++.|++...+..|.|.|.+.+-. .. .   .+.+.+++.+|+.  .+.+.
T Consensus       340 l~~vs~--~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~  417 (623)
T PRK10261        340 VEKVSF--DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR  417 (623)
T ss_pred             EeeeEe--EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence            444433  67899999999999999999999999999999998665442211 11 1   2344688889885  35555


Q ss_pred             CCHHHHHHHHHHHHh-----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152          180 DCGEQALSLVDTLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------  232 (271)
Q Consensus       180 ~~~~e~~~~~~~l~~-----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------  232 (271)
                      .++.+++........           ..-++.+-++ .....+ ..++++  |++|+...++++.               
T Consensus       418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~LSg--GqrQRv~iAraL~~~p~llllDEPts~L  494 (623)
T PRK10261        418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEFSG--GQRQRICIARALALNPKVIIADEAVSAL  494 (623)
T ss_pred             CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            677776654221100           0001222222 111112 234444  8999999999883               


Q ss_pred             ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 ------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                            .+...|..++++.+.+||++||-..
T Consensus       495 D~~~~~~i~~ll~~l~~~~g~tvi~isHdl~  525 (623)
T PRK10261        495 DVSIRGQIINLLLDLQRDFGIAYLFISHDMA  525 (623)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                  3445566666778999999999753

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.13  E-value=2.2e-10  Score=103.80  Aligned_cols=139  Identities=23%  Similarity=0.253  Sum_probs=85.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCC--C-HHH----HHHcCCcCCcc--eecCCCCH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHAL--D-PSL----AETIGVKTENL--LLAQPDCG  182 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~--~-~~~----~~~~g~~~~~~--~~~~~~~~  182 (271)
                      -+++|++++|+|+||+|||||++.|++...+.   +|.|.| +++...  . ..+    .+.+++.+|+.  .+.+..++
T Consensus        38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~-~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v  116 (330)
T PRK09473         38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF-NGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRV  116 (330)
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE-CCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCH
Confidence            56699999999999999999999999998875   787554 443221  1 122    23588889886  34444565


Q ss_pred             HHHHHHHHHHHh-----------cCCccEEEEcchh---hhcCCCccCCccchhhHHHHHHHHH----------------
Q 024152          183 EQALSLVDTLIR-----------SGSVDVVVVDSVA---ALVPKGELDGEMGDAHMAMQARLMS----------------  232 (271)
Q Consensus       183 ~e~~~~~~~l~~-----------~~~~~lvvID~l~---~~~~~~~l~~~~g~~~~~~~~~~l~----------------  232 (271)
                      .+.+........           ..-++.+-++...   ..+ ..++++  |++||...++++.                
T Consensus       117 ~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-p~~LSg--G~~QRv~IArAL~~~P~llilDEPts~LD  193 (330)
T PRK09473        117 GEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY-PHEFSG--GMRQRVMIAMALLCRPKLLIADEPTTALD  193 (330)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence            543322111000           0001222222111   112 133444  8999999999883                


Q ss_pred             -----HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 -----QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 -----~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                           .++..|..+.++.+.++|+++|-..
T Consensus       194 ~~~~~~i~~lL~~l~~~~g~til~iTHdl~  223 (330)
T PRK09473        194 VTVQAQIMTLLNELKREFNTAIIMITHDLG  223 (330)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence                 3445666667778999999999763

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.13  E-value=1.5e-10  Score=100.99  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=34.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.+.+
T Consensus        26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~   63 (251)
T PRK09544         26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR   63 (251)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            56799999999999999999999999999888887544

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.13  E-value=7.6e-11  Score=104.91  Aligned_cols=139  Identities=13%  Similarity=0.102  Sum_probs=83.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--------CCHHHHHHcCCcCCccee-cCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--------LDPSLAETIGVKTENLLL-AQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--------~~~~~~~~~g~~~~~~~~-~~~~~~~e~  185 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+..        ....+.+.+++.+|.... ....++.++
T Consensus        33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en  111 (289)
T PRK13645         33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV-GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKD  111 (289)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHH
Confidence            57799999999999999999999999999998998655 33221        112345567888887521 122466666


Q ss_pred             HHHHHHHHhc----------CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152          186 LSLVDTLIRS----------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q  233 (271)
Q Consensus       186 ~~~~~~l~~~----------~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~  233 (271)
                      +.+.......          .-+..+-++ .+.... ...++  .|++|+...++++.                     .
T Consensus       112 l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~-~~~LS--~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~  188 (289)
T PRK13645        112 IAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRS-PFELS--GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED  188 (289)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence            5543221000          000111110 111111 12233  38888888888873                     2


Q ss_pred             HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ..+.|..++++.+++||+++|...
T Consensus       189 l~~~l~~~~~~~~~tiiiisH~~~  212 (289)
T PRK13645        189 FINLFERLNKEYKKRIIMVTHNMD  212 (289)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHH
Confidence            333444555566899999999753

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.13  E-value=4.4e-10  Score=96.27  Aligned_cols=68  Identities=21%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceec--CCCCHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQAL  186 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~--~~~~~~e~~  186 (271)
                      +++|++++|.|+||+|||||++.+++...+.+|.+. ++.+...  ...+.+++.+|+..+.  ...++.+++
T Consensus         3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l   72 (223)
T TIGR03771         3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVK-VAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTV   72 (223)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCccch--HhhCcEEEecccccccCCCCccHHHHH
Confidence            679999999999999999999999999999999855 4444321  2334577777765432  124455543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.12  E-value=1e-10  Score=103.32  Aligned_cols=138  Identities=17%  Similarity=0.208  Sum_probs=82.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---C--HHHHHHcCCcCCcce-ecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---D--PSLAETIGVKTENLL-LAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~--~~~~~~~g~~~~~~~-~~~~~~~~e~~~~  188 (271)
                      -+.+|++++|.|+||+|||||++.|++...+..|.|.| +.+...   .  ..+.+.+++.+|+.. .....++.+++.+
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~  102 (275)
T PRK13639         24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI-KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAF  102 (275)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE-CCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence            57799999999999999999999999999888898654 433221   1  235667889988852 2223466666543


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      ......          ..-.+.+-++.+.... -.+++  .|++|+...++++.                     .....
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~  179 (275)
T PRK13639        103 GPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-PHHLS--GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKL  179 (275)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence            221000          0001111111111111 12233  37888888888772                     23334


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |.++.+ .+.+|++++|-..
T Consensus       180 l~~l~~-~~~til~vtH~~~  198 (275)
T PRK13639        180 LYDLNK-EGITIIISTHDVD  198 (275)
T ss_pred             HHHHHH-CCCEEEEEecCHH
Confidence            444443 4899999999764

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.12  E-value=3.8e-10  Score=99.34  Aligned_cols=140  Identities=20%  Similarity=0.218  Sum_probs=83.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C----HHHHHHcCCcCCcc--eecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D----PSLAETIGVKTENL--LLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~----~~~~~~~g~~~~~~--~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+.+|.|.+.+..... .    ..+.+.+++.+|+.  .+....+..+++.
T Consensus        34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~  113 (268)
T PRK10419         34 SLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR  113 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHH
Confidence            566999999999999999999999999988888986554322111 1    12456688888875  2334456655543


Q ss_pred             HHHH-HH------h----cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152          188 LVDT-LI------R----SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QA  234 (271)
Q Consensus       188 ~~~~-l~------~----~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~  234 (271)
                      .... +.      .    ..-+..+-++ .+.... ...++  .|++|+...++++.                     ..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS--~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~  190 (268)
T PRK10419        114 EPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKR-PPQLS--GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV  190 (268)
T ss_pred             HHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCC-CccCC--hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH
Confidence            2110 00      0    0001111111 011111 12233  38888888888873                     23


Q ss_pred             HHHHHHHHhhcCcEEEEEccccc
Q 024152          235 LRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       235 ~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ...|..++++.+.+||+++|-..
T Consensus       191 ~~~l~~~~~~~~~tiiivsH~~~  213 (268)
T PRK10419        191 IRLLKKLQQQFGTACLFITHDLR  213 (268)
T ss_pred             HHHHHHHHHHcCcEEEEEECCHH
Confidence            33455555566899999999763

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=3.9e-10  Score=98.29  Aligned_cols=73  Identities=14%  Similarity=0.132  Sum_probs=54.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+.+|++++|.|+||+|||||++.+++...+.     .|.|. ++.+...     ...+.+.+++.+|+..++...++.+
T Consensus        26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  104 (253)
T PRK14267         26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR-LFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD  104 (253)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE-ECCEEccccccChHHHhhceeEEecCCccCCCCcHHH
Confidence            57799999999999999999999999998763     77754 4443221     1234567889898877776677777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       105 nl~~  108 (253)
T PRK14267        105 NVAI  108 (253)
T ss_pred             HHHH
Confidence            7654

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=1.7e-10  Score=104.54  Aligned_cols=138  Identities=16%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh----hcCCeEEEEcCCCCC--C-HHH----HHHcCCcCCcce--ecCCCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ----RQGGYCVFIDAEHAL--D-PSL----AETIGVKTENLL--LAQPDC  181 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~----~~~g~v~~~~~e~~~--~-~~~----~~~~g~~~~~~~--~~~~~~  181 (271)
                      -+.+|++++|+|+||+|||||++.|++...    +..|.|. |+++...  . ..+    .+.+++.+|+..  +.+..+
T Consensus        29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~t  107 (330)
T PRK15093         29 TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR-FDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER  107 (330)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE-ECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcccc
Confidence            567999999999999999999999999875    3567755 4443221  1 122    235888888764  333455


Q ss_pred             HHHHHHHH-HHHH------------h---cCCccEEEEcch---hhhcCCCccCCccchhhHHHHHHHH-----------
Q 024152          182 GEQALSLV-DTLI------------R---SGSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLM-----------  231 (271)
Q Consensus       182 ~~e~~~~~-~~l~------------~---~~~~~lvvID~l---~~~~~~~~l~~~~g~~~~~~~~~~l-----------  231 (271)
                      +.+.+... ....            .   ..-++.+-++..   ...+ ..+++  .|++||...++++           
T Consensus       108 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-p~~LS--gG~~QRv~iArAL~~~P~llilDE  184 (330)
T PRK15093        108 VGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-PYELT--EGECQKVMIAIALANQPRLLIADE  184 (330)
T ss_pred             HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCC--HHHHHHHHHHHHHHCCCCEEEEeC
Confidence            55544321 1000            0   000111222211   0111 12344  3899999999888           


Q ss_pred             ----------HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          232 ----------SQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       232 ----------~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                                .++.+.|+.+.++.+++||+++|-.
T Consensus       185 Pts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl  219 (330)
T PRK15093        185 PTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL  219 (330)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence                      2455566666666799999999975

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.11  E-value=1.9e-10  Score=104.01  Aligned_cols=139  Identities=15%  Similarity=0.169  Sum_probs=84.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEcCCCCC--C-HHHH----HHcCCcCCcce--ecCCCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHAL--D-PSLA----ETIGVKTENLL--LAQPDC  181 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~----~~g~v~~~~~e~~~--~-~~~~----~~~g~~~~~~~--~~~~~~  181 (271)
                      -+++|++++|+|+||||||||++.|++...+    .+|.|.| +++...  . ..+.    +.+++.+|+..  +.+..+
T Consensus        29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~-~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~  107 (326)
T PRK11022         29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEF-NGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT  107 (326)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEE-CCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence            5779999999999999999999999998863    5677655 433221  1 1222    25788888763  344455


Q ss_pred             HHHHHHH-HHHHH----------hcCCccEEEEcch---hhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152          182 GEQALSL-VDTLI----------RSGSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLMS---------------  232 (271)
Q Consensus       182 ~~e~~~~-~~~l~----------~~~~~~lvvID~l---~~~~~~~~l~~~~g~~~~~~~~~~l~---------------  232 (271)
                      +.+.+.. +....          ...-++.+-++..   ...+ ..++++  |++||...++++.               
T Consensus       108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-p~~LSg--Gq~QRv~iArAL~~~P~llilDEPts~L  184 (326)
T PRK11022        108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY-PHQLSG--GMSQRVMIAMAIACRPKLLIADEPTTAL  184 (326)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence            5433221 11100          0000122222211   1112 133444  8999999999883               


Q ss_pred             ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 ------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                            +++..|..+.++.+.++|+++|-..
T Consensus       185 D~~~~~~il~lL~~l~~~~g~til~iTHdl~  215 (326)
T PRK11022        185 DVTIQAQIIELLLELQQKENMALVLITHDLA  215 (326)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                  3455666666778999999999763

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.11  E-value=4e-10  Score=98.07  Aligned_cols=73  Identities=16%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.|++...+     ..|.|.| +....   ....+.+.+++.+|+..++...++.+++
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl  103 (250)
T PRK14247         25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL-DGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV  103 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE-CCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHH
Confidence            5669999999999999999999999998864     4777554 43321   1124456788999887666667787776


Q ss_pred             HH
Q 024152          187 SL  188 (271)
Q Consensus       187 ~~  188 (271)
                      ..
T Consensus       104 ~~  105 (250)
T PRK14247        104 AL  105 (250)
T ss_pred             HH
Confidence            54

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.11  E-value=1.1e-10  Score=99.60  Aligned_cols=70  Identities=23%  Similarity=0.293  Sum_probs=51.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||+..|++...+..|.+.| +.+...  . ..+.+.+++.+|+..++. .++.+++
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l   98 (220)
T cd03245          26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL-DGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNI   98 (220)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEE-CCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHh
Confidence            56699999999999999999999999999888888554 433211  1 233456788888766554 4665554

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.11  E-value=2.9e-10  Score=100.48  Aligned_cols=146  Identities=23%  Similarity=0.221  Sum_probs=92.8

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-h----cCCeEEEEcCCCCC--CH-----HHHHHcCCcCC
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-R----QGGYCVFIDAEHAL--DP-----SLAETIGVKTE  172 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~----~~g~v~~~~~e~~~--~~-----~~~~~~g~~~~  172 (271)
                      ..+|.+.-  .+.+|++++|+|.+||||||+++.|++.+. +    .+|.+.| .++...  ..     .+-+.+++.+|
T Consensus        19 ~av~~vs~--~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f-~g~~l~~l~~~~~~~iRG~~I~mIfQ   95 (316)
T COG0444          19 KAVDGVSF--ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILF-DGKDLLSLSEKELRKIRGKEIAMIFQ   95 (316)
T ss_pred             EEEeceeE--EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEE-CCcccccCCHHHHHhhcCceEEEEEc
Confidence            34444433  677999999999999999999999999987 3    3456444 443222  22     12345778888


Q ss_pred             ccee--cCCCCHH-HHHHHHHHHH-----------hcCCccEEEEcc---hhhhcCCCccCCccchhhHHHHHHHH----
Q 024152          173 NLLL--AQPDCGE-QALSLVDTLI-----------RSGSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLM----  231 (271)
Q Consensus       173 ~~~~--~~~~~~~-e~~~~~~~l~-----------~~~~~~lvvID~---l~~~~~~~~l~~~~g~~~~~~~~~~l----  231 (271)
                      +...  .+..++. ++.+.++...           ...-++.|-|+.   ....|| .++++  |++||++.+-++    
T Consensus        96 ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSG--GMrQRV~IAmala~~P  172 (316)
T COG0444          96 DPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSG--GMRQRVMIAMALALNP  172 (316)
T ss_pred             CchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCC--cHHHHHHHHHHHhCCC
Confidence            7422  2223332 2222222110           001133444443   334453 56665  899999988887    


Q ss_pred             -----------------HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          232 -----------------SQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       232 -----------------~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                                       ++++..|+++.+|.+.++|+++|-.
T Consensus       173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl  214 (316)
T COG0444         173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL  214 (316)
T ss_pred             CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence                             5688888998999999999999965

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.10  E-value=6e-10  Score=93.86  Aligned_cols=123  Identities=20%  Similarity=0.242  Sum_probs=78.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCC--CH-HH-HHHcCCcCCcceecCCCCHHHHHH-
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQPDCGEQALS-  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~--~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~-  187 (271)
                      -+.+|++++|.|+||+|||||++.+++..  .+..|.+.| +.+...  .. .. ...+++.+|....+...+..+++. 
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~  100 (200)
T cd03217          22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF-KGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY  100 (200)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEE-CCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence            45699999999999999999999999984  577888554 433221  11 22 234778888765555555554432 


Q ss_pred             --------------HHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          188 --------------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       188 --------------~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                                    +++.+.  .+++++++|....-.+        .     .-.+.+.+.++.+   + +.+.+||+++
T Consensus       101 ~~~~LS~G~~qrv~laral~--~~p~illlDEPt~~LD--------~-----~~~~~l~~~L~~~---~-~~~~tiii~s  161 (200)
T cd03217         101 VNEGFSGGEKKRNEILQLLL--LEPDLAILDEPDSGLD--------I-----DALRLVAEVINKL---R-EEGKSVLIIT  161 (200)
T ss_pred             ccccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccCC--------H-----HHHHHHHHHHHHH---H-HCCCEEEEEe
Confidence                          233332  4688999998765542        0     1112333334333   3 3588999999


Q ss_pred             cccc
Q 024152          254 QVFS  257 (271)
Q Consensus       254 ql~~  257 (271)
                      |...
T Consensus       162 h~~~  165 (200)
T cd03217         162 HYQR  165 (200)
T ss_pred             cCHH
Confidence            9654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.10  E-value=5.2e-10  Score=103.66  Aligned_cols=64  Identities=27%  Similarity=0.321  Sum_probs=52.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC--CCCCCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHALDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~--e~~~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|+||+|+|||||++.+.+...+..|.|-+-+.  .+.....+-+++||.+|++.+++
T Consensus       358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~  423 (580)
T COG4618         358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD  423 (580)
T ss_pred             EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC
Confidence            57799999999999999999999999999999997544332  23334567889999999987764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.10  E-value=2.6e-10  Score=109.48  Aligned_cols=140  Identities=17%  Similarity=0.192  Sum_probs=89.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE-cCCC---C-CC----HHHHHHcCCcCCcceecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI-DAEH---A-LD----PSLAETIGVKTENLLLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~-~~e~---~-~~----~~~~~~~g~~~~~~~~~~~~~~~e~  185 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.|. +...   . ..    ..+.+.+++.+|+..++...++.++
T Consensus       306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~  385 (520)
T TIGR03269       306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN  385 (520)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence            578999999999999999999999999998888986653 3211   1 11    1234568999998776666788777


Q ss_pred             HHHHHHH------Hh---cCCccEEEEcc-----hhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152          186 LSLVDTL------IR---SGSVDVVVVDS-----VAALVPKGELDGEMGDAHMAMQARLMS-------------------  232 (271)
Q Consensus       186 ~~~~~~l------~~---~~~~~lvvID~-----l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------------  232 (271)
                      +.....+      ..   ..-+..+-++.     +.... ...++  .|++|+...++++.                   
T Consensus       386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~LS--gGq~qrv~laral~~~p~lLllDEPt~~LD~~~  462 (520)
T TIGR03269       386 LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKY-PDELS--EGERHRVALAQVLIKEPRIVILDEPTGTMDPIT  462 (520)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            6542110      00   00011111111     11111 12334  38999999998873                   


Q ss_pred             --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                        ...+.|..++++.+.+||+++|...
T Consensus       463 ~~~l~~~l~~l~~~~g~tvi~vsHd~~  489 (520)
T TIGR03269       463 KVDVTHSILKAREEMEQTFIIVSHDMD  489 (520)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEEeCCHH
Confidence              2334455555677999999999764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.10  E-value=2e-10  Score=103.59  Aligned_cols=144  Identities=15%  Similarity=0.111  Sum_probs=86.4

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-------------------CCHHHHHH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-------------------LDPSLAET  166 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-------------------~~~~~~~~  166 (271)
                      .|+.+.-  -+++|++++|+|+||+|||||++.|++...+..|.|.+ ++...                   ....+++.
T Consensus        41 ~L~~vsl--~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (320)
T PRK13631         41 ALNNISY--TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV-GDIYIGDKKNNHELITNPYSKKIKNFKELRRR  117 (320)
T ss_pred             ceeeeEE--EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE-CCEEcccccccccccccccccccchHHHHHhc
Confidence            3444433  67799999999999999999999999999999998654 33211                   11245667


Q ss_pred             cCCcCCcc--eecCCCCHHHHHHHHHHHH--------h--cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-
Q 024152          167 IGVKTENL--LLAQPDCGEQALSLVDTLI--------R--SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-  232 (271)
Q Consensus       167 ~g~~~~~~--~~~~~~~~~e~~~~~~~l~--------~--~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-  232 (271)
                      +++.+|+.  .++. .++.+++.+.....        .  ..-+..+-++ .+.... ...++  .|++|+...++++. 
T Consensus       118 ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGqkqRvaiAraL~~  193 (320)
T PRK13631        118 VSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS-PFGLS--GGQKRRVAIAGILAI  193 (320)
T ss_pred             EEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCC--HHHHHHHHHHHHHHc
Confidence            89998875  3333 36666554321100        0  0001111121 111111 12233  48899999998883 


Q ss_pred             --------------------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --------------------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --------------------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                                          .+...|..+. +.+.|||+++|-..
T Consensus       194 ~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~-~~g~TiiivtHd~~  237 (320)
T PRK13631        194 QPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANNKTVFVITHTME  237 (320)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHH
Confidence                                2333444433 45899999999764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.09  E-value=2.7e-10  Score=109.05  Aligned_cols=73  Identities=18%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH--HHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP--SLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~--~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.|.+.+-. ...  ...+.+++.+|+..++...++.+++.
T Consensus        27 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  102 (510)
T PRK09700         27 TVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLY  102 (510)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhh
Confidence            56799999999999999999999999999998998654332211 111  12335788888876666667766654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.09  E-value=4.7e-10  Score=107.44  Aligned_cols=139  Identities=16%  Similarity=0.162  Sum_probs=83.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH-HH-HHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP-SL-AETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|+||||+|||||++.|++...+..|.|.+.+.... ... .+ ...+++.+|+...+...++.+++.+...
T Consensus        33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  112 (510)
T PRK15439         33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP  112 (510)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc
Confidence            57799999999999999999999999999999898654332211 111 12 2347888888777766777776543210


Q ss_pred             H----Hh--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152          192 L----IR--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL  244 (271)
Q Consensus       192 l----~~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake  244 (271)
                      .    ..  ..-++.+-++...... ...++  .|++|+...++++.                     .....|..++ +
T Consensus       113 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~  188 (510)
T PRK15439        113 KRQASMQKMKQLLAALGCQLDLDSS-AGSLE--VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL-A  188 (510)
T ss_pred             cchHHHHHHHHHHHHcCCCccccCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H
Confidence            0    00  0001111111111111 12333  37888888888773                     2233344443 4


Q ss_pred             cCcEEEEEccccc
Q 024152          245 SQTILIFINQVFS  257 (271)
Q Consensus       245 ~~~~Vi~~sql~~  257 (271)
                      .+.+||+++|...
T Consensus       189 ~g~tiiivtHd~~  201 (510)
T PRK15439        189 QGVGIVFISHKLP  201 (510)
T ss_pred             CCCEEEEEeCCHH
Confidence            5899999999753

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.09  E-value=1.2e-10  Score=100.45  Aligned_cols=71  Identities=24%  Similarity=0.300  Sum_probs=53.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CC-HHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD-PSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.| +.+..  .. ..+.+.+++.+|+..++. .++.+++.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~   97 (237)
T cd03252          24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV-DGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIA   97 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE-CCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhh
Confidence            57799999999999999999999999999999998655 43321  11 234556888888865553 46666554

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.09  E-value=4.4e-10  Score=99.23  Aligned_cols=73  Identities=23%  Similarity=0.290  Sum_probs=51.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecCCCCHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--------GGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~--------~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      -+++|++++|.|+||+|||||++.|++...+.        .|.|.+ +.+...  . ..+.+.+++.+|........++.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~  101 (272)
T PRK13547         23 RIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL-NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAR  101 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE-CCEEcccCCHHHHHhhcEEecccCCCCCCCcHH
Confidence            56799999999999999999999999998876        777554 433221  1 23445577888775433345666


Q ss_pred             HHHHH
Q 024152          184 QALSL  188 (271)
Q Consensus       184 e~~~~  188 (271)
                      +++..
T Consensus       102 e~l~~  106 (272)
T PRK13547        102 EIVLL  106 (272)
T ss_pred             HHHhh
Confidence            65543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.08  E-value=2.7e-10  Score=109.30  Aligned_cols=140  Identities=14%  Similarity=0.199  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEc----------------------CCC-------CC--C-
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFID----------------------AEH-------AL--D-  160 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~----------------------~e~-------~~--~-  160 (271)
                      -+.+|++++|+|+||||||||++.+++..  .+..|.|.|.+                      ...       ..  . 
T Consensus        22 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~  101 (520)
T TIGR03269        22 TIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD  101 (520)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCH
Confidence            57799999999999999999999999997  57888866541                      100       00  0 


Q ss_pred             ---HHHHHHcCCcCCc-ceecCCCCHHHHHHHHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHH
Q 024152          161 ---PSLAETIGVKTEN-LLLAQPDCGEQALSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAM  226 (271)
Q Consensus       161 ---~~~~~~~g~~~~~-~~~~~~~~~~e~~~~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~  226 (271)
                         ..+.+.+++.+|+ ..++...++.+.+.+......          ..-+..+-++.+.... -..+++  |++||..
T Consensus       102 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrv~  178 (520)
T TIGR03269       102 KLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI-ARDLSG--GEKQRVV  178 (520)
T ss_pred             HHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-cccCCH--HHHHHHH
Confidence               1234457888886 455555677666554221100          0001112222221111 133444  8999999


Q ss_pred             HHHHHH---------------------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          227 QARLMS---------------------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       227 ~~~~l~---------------------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      .++++.                     .....|.+++++.+.+||+++|-..
T Consensus       179 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~  230 (520)
T TIGR03269       179 LARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE  230 (520)
T ss_pred             HHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence            998873                     2334456666777999999999763

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.08  E-value=3.2e-10  Score=108.38  Aligned_cols=74  Identities=23%  Similarity=0.354  Sum_probs=55.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CH--HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DP--SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+.+|++++|+||||+|||||++.+++...+..|.|.|.+.+-.. ..  ...+.+++.+|...++...++.+++.+
T Consensus        26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  102 (501)
T PRK10762         26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFL  102 (501)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhh
Confidence            567999999999999999999999999999999986554322111 11  123457888888776666777776654

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.08  E-value=6.1e-10  Score=97.46  Aligned_cols=73  Identities=16%  Similarity=0.177  Sum_probs=53.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...+     ..|.|.| +.....     ...+.+.+++.+|....+. .++.+
T Consensus        34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  111 (258)
T PRK14268         34 QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI-EGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYD  111 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEE-CCEEcccccchHHHHhhhEEEEecCCccCc-ccHHH
Confidence            5779999999999999999999999998764     5787554 332211     1234566888888876665 67777


Q ss_pred             HHHHH
Q 024152          185 ALSLV  189 (271)
Q Consensus       185 ~~~~~  189 (271)
                      ++.+.
T Consensus       112 nl~~~  116 (258)
T PRK14268        112 NVAYG  116 (258)
T ss_pred             HHHHH
Confidence            76543

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.08  E-value=5.2e-10  Score=97.87  Aligned_cols=60  Identities=27%  Similarity=0.279  Sum_probs=44.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC-----CC-CCH-H----HHHHcCCcCCcc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE-----HA-LDP-S----LAETIGVKTENL  174 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e-----~~-~~~-~----~~~~~g~~~~~~  174 (271)
                      -+.+|++++|.|+||+|||||++.+++...+..|.|.|.+..     .. ... .    +...+++.+|+.
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~   98 (258)
T PRK11701         28 DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP   98 (258)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence            467999999999999999999999999999999986554432     11 111 1    233578888875

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.08  E-value=8.8e-10  Score=94.86  Aligned_cols=72  Identities=24%  Similarity=0.355  Sum_probs=53.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC--CCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALDPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~--~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+.+...  .....+++.+++.+|+..++. .++.+++.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~   97 (234)
T cd03251          24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIA   97 (234)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhh
Confidence            5779999999999999999999999999999999865433211  111244567888888876654 46666554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.07  E-value=3e-10  Score=96.84  Aligned_cols=140  Identities=16%  Similarity=0.213  Sum_probs=82.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-------HHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-------~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||+..|++...+..|.|. ++.+....       ....+.+++.+|...++ ..++.+++.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~  100 (218)
T cd03290          23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH-WSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENIT  100 (218)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE-ECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHh
Confidence            5669999999999999999999999999988889865 44332111       12234578888877655 356666554


Q ss_pred             HHHHH---HhcCCccEEEEcchhhh----------cCCCccCCccchhhHHHHHHHHHH--------------------H
Q 024152          188 LVDTL---IRSGSVDVVVVDSVAAL----------VPKGELDGEMGDAHMAMQARLMSQ--------------------A  234 (271)
Q Consensus       188 ~~~~l---~~~~~~~lvvID~l~~~----------~~~~~l~~~~g~~~~~~~~~~l~~--------------------~  234 (271)
                      .....   ....-...+-++.....          .....++  .|++|+...++++..                    .
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS--~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~  178 (218)
T cd03290         101 FGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLS--GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH  178 (218)
T ss_pred             hcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCC--HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHH
Confidence            32110   00000011111110000          0012233  388888888888732                    1


Q ss_pred             HHH--HHHHHhhcCcEEEEEcccccc
Q 024152          235 LRK--LSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       235 ~r~--L~~lake~~~~Vi~~sql~~~  258 (271)
                      +..  +...+++.+.++|+++|-...
T Consensus       179 l~~~~ll~~~~~~~~tii~~sH~~~~  204 (218)
T cd03290         179 LMQEGILKFLQDDKRTLVLVTHKLQY  204 (218)
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCChHH
Confidence            222  334456678999999997643

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=99.07  E-value=3.1e-09  Score=93.54  Aligned_cols=133  Identities=20%  Similarity=0.298  Sum_probs=91.5

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHh----------hcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCC
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ----------RQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQP  179 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~----------~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~  179 (271)
                      +..|-..+|+|++|+||||+++.++-.++          +..|+|+|++.|.....      ..+..+|+.+.+++..+.
T Consensus        86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dl  165 (402)
T COG3598          86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDL  165 (402)
T ss_pred             hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheec
Confidence            34788888899999999999988776554          35678999999877653      346678888877665544


Q ss_pred             CCHH------HHH--HHHHHH---HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcE
Q 024152          180 DCGE------QAL--SLVDTL---IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTI  248 (271)
Q Consensus       180 ~~~~------e~~--~~~~~l---~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~  248 (271)
                      ++++      +.+  .+.+++   ..+..++++|||+.-..+.        |+.....+   +..+.+.+.++|.+++|.
T Consensus       166 td~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~--------G~s~s~vq---v~~fi~~~rkla~~l~ca  234 (402)
T COG3598         166 TDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYE--------GKSISDVQ---VKEFIKKTRKLARNLECA  234 (402)
T ss_pred             cccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcC--------CccchhHH---HHHHHHHHHHHHHhcCCe
Confidence            2211      111  223332   3456799999999988874        33322233   345555555669999999


Q ss_pred             EEEEccccccc
Q 024152          249 LIFINQVFSIN  259 (271)
Q Consensus       249 Vi~~sql~~~~  259 (271)
                      ||++.|..+..
T Consensus       235 Iiy~hHtskss  245 (402)
T COG3598         235 IIYIHHTSKSS  245 (402)
T ss_pred             EEEEecccccc
Confidence            99999988654

>PRK13409 putative ATPase RIL; Provisional

Probab=99.07  E-value=2.8e-10  Score=110.51  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+.+|++++|.|+||+|||||++.+++...+..|.|.+ +          ..+++.+|........++.+++........
T Consensus       361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~-~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~  429 (590)
T PRK13409        361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP-E----------LKISYKPQYIKPDYDGTVEDLLRSITDDLG  429 (590)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-e----------eeEEEecccccCCCCCcHHHHHHHHhhhcC
Confidence            67899999999999999999999999999988887654 2          135666666555455566666544321100


Q ss_pred             -----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcE
Q 024152          195 -----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTI  248 (271)
Q Consensus       195 -----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~  248 (271)
                           ..-+..+-++.+.... -..+++  |++|+...++++.                     ...+.|.+++++.+.+
T Consensus       430 ~~~~~~~~L~~l~l~~~~~~~-~~~LSG--Ge~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t  506 (590)
T PRK13409        430 SSYYKSEIIKPLQLERLLDKN-VKDLSG--GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREAT  506 (590)
T ss_pred             hHHHHHHHHHHCCCHHHHhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence                 0001111111111111 123333  7777777777762                     3444555667777999


Q ss_pred             EEEEccccc
Q 024152          249 LIFINQVFS  257 (271)
Q Consensus       249 Vi~~sql~~  257 (271)
                      ||+++|-..
T Consensus       507 viivsHD~~  515 (590)
T PRK13409        507 ALVVDHDIY  515 (590)
T ss_pred             EEEEeCCHH
Confidence            999999753

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.07  E-value=8.1e-10  Score=96.28  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=52.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...     +.+|.|.+ +.+...    . ..+.+.+++.+|+...+. .++.+
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  105 (253)
T PRK14242         28 EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL-DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFE  105 (253)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE-CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHH
Confidence            566999999999999999999999999864     36777554 433221    1 234567889998876665 47777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++.+
T Consensus       106 nl~~  109 (253)
T PRK14242        106 NVAY  109 (253)
T ss_pred             HHHH
Confidence            6654

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=6.2e-10  Score=97.60  Aligned_cols=142  Identities=13%  Similarity=0.144  Sum_probs=83.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCC---CC-HHHHHHcCCcCCcceecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHA---LD-PSLAETIGVKTENLLLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~~~~~~~~e~  185 (271)
                      -+++|++++|+|+||+|||||+..+++...+.     +|.+.|.+..-.   .. ..+.+.+++.+++..++. .++.++
T Consensus        29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~en  107 (261)
T PRK14258         29 EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDN  107 (261)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHH
Confidence            56799999999999999999999999998864     566554432211   11 234556788888766555 677766


Q ss_pred             HHHHHHHHh-----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152          186 LSLVDTLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------  232 (271)
Q Consensus       186 ~~~~~~l~~-----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------  232 (271)
                      +........           ..-+..+-++ .+..........-+.|++++...++++.                     
T Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~  187 (261)
T PRK14258        108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM  187 (261)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            654321100           0000011000 1111111111122348888888888873                     


Q ss_pred             HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ...+.|..++++.+.+||+++|...
T Consensus       188 ~l~~~l~~l~~~~~~tiiivsH~~~  212 (261)
T PRK14258        188 KVESLIQSLRLRSELTMVIVSHNLH  212 (261)
T ss_pred             HHHHHHHHHHHhCCCEEEEEECCHH
Confidence            2233444444556899999999764

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.06  E-value=1.5e-10  Score=104.63  Aligned_cols=130  Identities=18%  Similarity=0.200  Sum_probs=83.5

Q ss_pred             EEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh--------
Q 024152          124 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR--------  194 (271)
Q Consensus       124 I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~--------  194 (271)
                      |.|+||+|||||++.|++...+.+|.|.| +.+... .....+.+++.+|+..+++..++.+++.+......        
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i-~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIML-DGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEE-CCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            57999999999999999999999998654 433221 11234568899999888877888888765432110        


Q ss_pred             --cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcEEEE
Q 024152          195 --SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTILIF  251 (271)
Q Consensus       195 --~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~Vi~  251 (271)
                        ..-++.+-++.+.... ...++  .|++|+...++++.                     .....|+++.++.+.|||+
T Consensus        80 ~~~~~l~~~~l~~~~~~~-~~~LS--gGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii  156 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRK-PHQLS--GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF  156 (325)
T ss_pred             HHHHHHHHcCCcchhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence              0001111122211111 12333  38899999998883                     2334555566677999999


Q ss_pred             Eccccc
Q 024152          252 INQVFS  257 (271)
Q Consensus       252 ~sql~~  257 (271)
                      ++|...
T Consensus       157 vTHd~~  162 (325)
T TIGR01187       157 VTHDQE  162 (325)
T ss_pred             EeCCHH
Confidence            999763

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.06  E-value=5.7e-10  Score=106.35  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C--HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D--PSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.|.+..... .  ..+.+.+++.+|+...+...++.+++.+
T Consensus        20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~   96 (491)
T PRK10982         20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWL   96 (491)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhc
Confidence            577999999999999999999999999998988986544322111 1  1234457888887766666677666543

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.06  E-value=6.7e-10  Score=97.71  Aligned_cols=72  Identities=17%  Similarity=0.211  Sum_probs=53.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...+     ..|.|. ++.+...     ...+.+.+++.+|....+. .++.+
T Consensus        41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~-~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  118 (267)
T PRK14235         41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKIT-LDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYE  118 (267)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE-ECCEECcccccchHHHhhceEEEecCCCCCC-CcHHH
Confidence            5679999999999999999999999999864     678755 4443221     1234566888888876665 37777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++.+
T Consensus       119 nl~~  122 (267)
T PRK14235        119 NVAY  122 (267)
T ss_pred             HHHH
Confidence            6654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.7e-10  Score=112.95  Aligned_cols=139  Identities=19%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC------C--C---CC-HH---H-HHHcCCcCCcc--ee
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE------H--A---LD-PS---L-AETIGVKTENL--LL  176 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e------~--~---~~-~~---~-~~~~g~~~~~~--~~  176 (271)
                      -+++|++++|+|+||+|||||++.|++...+.+|.+.+-+..      .  .   .. ..   + .+.+++.+|..  .+
T Consensus        38 ~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l  117 (623)
T PRK10261         38 SLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSL  117 (623)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhc
Confidence            677999999999999999999999999998888875542210      0  0   01 11   1 13578888875  34


Q ss_pred             cCCCCHHHHHHHHHHHHhc-----------CCccEEEEcc---hhhhcCCCccCCccchhhHHHHHHHHH----------
Q 024152          177 AQPDCGEQALSLVDTLIRS-----------GSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMS----------  232 (271)
Q Consensus       177 ~~~~~~~e~~~~~~~l~~~-----------~~~~lvvID~---l~~~~~~~~l~~~~g~~~~~~~~~~l~----------  232 (271)
                      .+..++.+++....+....           .-+..+-+..   ....+ ..++++  |++||+..++++.          
T Consensus       118 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-~~~LSg--Gq~QRv~iA~AL~~~P~lLllDE  194 (623)
T PRK10261        118 NPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRY-PHQLSG--GMRQRVMIAMALSCRPAVLIADE  194 (623)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCC-CccCCH--HHHHHHHHHHHHhCCCCEEEEeC
Confidence            5556777766543221000           0011222211   11111 233444  8999999999883          


Q ss_pred             -----------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 -----------QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 -----------~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                                 ++...|+++.++.+++||+++|-.
T Consensus       195 Pt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl  229 (623)
T PRK10261        195 PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM  229 (623)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence                       344455566667799999999975

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.06  E-value=1.5e-09  Score=87.74  Aligned_cols=117  Identities=23%  Similarity=0.329  Sum_probs=76.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCH-H-HHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCG-E-QALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~-~-e~~~~~  189 (271)
                      -+++|++++|.|+||+|||||+..+++...+..|.+ +++.+...   ...+...+++.+|       .+. + ..+.++
T Consensus        21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~q-------lS~G~~~r~~l~   92 (157)
T cd00267          21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-LIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALA   92 (157)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccCCHHHHHhceEEEee-------CCHHHHHHHHHH
Confidence            466999999999999999999999999988888875 45443221   2234455666665       333 2 334455


Q ss_pred             HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          190 DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       190 ~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      +.+.  ..++++++|....-.+.         .   . ...+.+.++.+   .+. +.++++++|....
T Consensus        93 ~~l~--~~~~i~ilDEp~~~lD~---------~---~-~~~l~~~l~~~---~~~-~~tii~~sh~~~~  142 (157)
T cd00267          93 RALL--LNPDLLLLDEPTSGLDP---------A---S-RERLLELLREL---AEE-GRTVIIVTHDPEL  142 (157)
T ss_pred             HHHh--cCCCEEEEeCCCcCCCH---------H---H-HHHHHHHHHHH---HHC-CCEEEEEeCCHHH
Confidence            5554  35899999987755420         0   1 12233333333   333 7899999997643

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.05  E-value=5.4e-09  Score=86.36  Aligned_cols=122  Identities=16%  Similarity=0.208  Sum_probs=70.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---------HHHHHHcCCcCCcc-eecCCCCH--
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---------PSLAETIGVKTENL-LLAQPDCG--  182 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---------~~~~~~~g~~~~~~-~~~~~~~~--  182 (271)
                      -+++|++++|.||||+|||||++.++.    ..|.+.+.+......         ......+++..... ......+.  
T Consensus        17 ~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq   92 (176)
T cd03238          17 SIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGE   92 (176)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHH
Confidence            567999999999999999999998752    455544432211111         12334444432111 11122232  


Q ss_pred             HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          183 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       183 ~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      .+.+.+++.+....+++++++|+...-.+         .    ...+.+.+.++.+   . +.+.+||+++|...
T Consensus        93 ~qrl~laral~~~~~p~llLlDEPt~~LD---------~----~~~~~l~~~l~~~---~-~~g~tvIivSH~~~  150 (176)
T cd03238          93 LQRVKLASELFSEPPGTLFILDEPSTGLH---------Q----QDINQLLEVIKGL---I-DLGNTVILIEHNLD  150 (176)
T ss_pred             HHHHHHHHHHhhCCCCCEEEEeCCcccCC---------H----HHHHHHHHHHHHH---H-hCCCEEEEEeCCHH
Confidence            24456667666544599999999776553         0    1112233333333   3 46999999999864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.05  E-value=9.7e-10  Score=96.14  Aligned_cols=74  Identities=16%  Similarity=0.159  Sum_probs=54.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC----C-CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA----L-DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~----~-~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...+     .+|.|.+ +....    . ...+++.+++.+|+..++...++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~  104 (258)
T PRK14241         26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL-DGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRD  104 (258)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE-CCEeccccccChHHHhcceEEEccccccCCCCcHHH
Confidence            5779999999999999999999999998864     5777554 43321    1 1234566888888877776677877


Q ss_pred             HHHHH
Q 024152          185 ALSLV  189 (271)
Q Consensus       185 ~~~~~  189 (271)
                      ++...
T Consensus       105 nl~~~  109 (258)
T PRK14241        105 NVVAG  109 (258)
T ss_pred             HHHHH
Confidence            76543

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.05  E-value=5.9e-10  Score=97.13  Aligned_cols=40  Identities=30%  Similarity=0.376  Sum_probs=35.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.|.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g   64 (253)
T TIGR02323        25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM   64 (253)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec
Confidence            5679999999999999999999999999999999866544

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.05  E-value=9.8e-10  Score=87.82  Aligned_cols=78  Identities=19%  Similarity=0.337  Sum_probs=57.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH--HHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE--QALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--e~~~~~~~l  192 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +..        ..+++.++       .+..  +.+.+++.+
T Consensus        22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~-~~~--------~~i~~~~~-------lS~G~~~rv~laral   85 (144)
T cd03221          22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW-GST--------VKIGYFEQ-------LSGGEKMRLALAKLL   85 (144)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE-CCe--------EEEEEEcc-------CCHHHHHHHHHHHHH
Confidence            56799999999999999999999999999998888544 431        23444444       3433  344556666


Q ss_pred             HhcCCccEEEEcchhhhc
Q 024152          193 IRSGSVDVVVVDSVAALV  210 (271)
Q Consensus       193 ~~~~~~~lvvID~l~~~~  210 (271)
                      .  .+++++++|....-.
T Consensus        86 ~--~~p~illlDEP~~~L  101 (144)
T cd03221          86 L--ENPNLLLLDEPTNHL  101 (144)
T ss_pred             h--cCCCEEEEeCCccCC
Confidence            5  478999999876554

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.05  E-value=8.3e-10  Score=108.61  Aligned_cols=71  Identities=24%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceec
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLA  177 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~  177 (271)
                      +.|+.+--  .+++|+.++|+|++|||||||++.+.+...|..|.+.+-+..  ......+++.+|+.+|+..++
T Consensus       487 ~vL~~isL--~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf  559 (709)
T COG2274         487 PVLEDLSL--EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF  559 (709)
T ss_pred             chhhceeE--EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhh
Confidence            34554443  799999999999999999999999999999999985543322  222347788999999876554

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.05  E-value=2.5e-10  Score=98.59  Aligned_cols=71  Identities=17%  Similarity=0.210  Sum_probs=51.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.|.+ +..   ....+.+.+++.+|+..++. .++.+++.
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~   98 (238)
T cd03249          25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDG-VDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIR   98 (238)
T ss_pred             EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECC-EehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhh
Confidence            5779999999999999999999999999999999865443 221   11233456888888765543 35555443

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.05  E-value=7.2e-10  Score=106.15  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=52.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CH--HHHHHcCCcCCcc---eecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DP--SLAETIGVKTENL---LLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~--~~~~~~g~~~~~~---~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+++|.|.|.+..-.. ..  .+.+.+++.+|..   .++...++.+++.
T Consensus       285 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~  363 (510)
T PRK09700        285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMA  363 (510)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhc
Confidence            577999999999999999999999999998889986554322111 11  2344578888863   3445566666554

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.04  E-value=1.5e-09  Score=94.56  Aligned_cols=71  Identities=17%  Similarity=0.161  Sum_probs=48.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.+++... ..|.|. ++.+...   ...+.+.+++.+|........++.+++.
T Consensus        18 ~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~-~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~   91 (248)
T PRK03695         18 EVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQ-FAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT   91 (248)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEE-ECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHH
Confidence            577999999999999999999999999874 577754 4443221   1233455777777654444445554443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.04  E-value=6.5e-10  Score=106.25  Aligned_cols=139  Identities=17%  Similarity=0.208  Sum_probs=84.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC--HHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD--PSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      .+++|++++|.|+||+|||||++.|++...+..|.|.|.+.... ..  ..+.+.+++.+|+..++...++.+++.+...
T Consensus        26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~  105 (501)
T PRK11288         26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQL  105 (501)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccc
Confidence            67799999999999999999999999999888998654332211 11  1234568888888766666677666554210


Q ss_pred             --H---------Hh--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          192 --L---------IR--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       192 --l---------~~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                        .         ..  ..-+..+-++...... ...++  .|++|+...++++.                     .....
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~  182 (501)
T PRK11288        106 PHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-LKYLS--IGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV  182 (501)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-hhhCC--HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence              0         00  0001111111110111 12233  38888888888873                     23334


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |..+ ++.+.+||+++|...
T Consensus       183 l~~~-~~~g~tiiiitHd~~  201 (501)
T PRK11288        183 IREL-RAEGRVILYVSHRME  201 (501)
T ss_pred             HHHH-HhCCCEEEEEeCCHH
Confidence            4443 345899999999753

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.04  E-value=2.2e-10  Score=98.34  Aligned_cols=70  Identities=29%  Similarity=0.336  Sum_probs=50.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.+. ++.....   ...+.+.+++.+|+..++.. ++.+++
T Consensus        25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~   97 (229)
T cd03254          25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL-IDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENI   97 (229)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE-ECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHH
Confidence            5679999999999999999999999999988889854 4432211   12345567888887654432 444443

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.4e-09  Score=89.20  Aligned_cols=149  Identities=19%  Similarity=0.163  Sum_probs=91.6

Q ss_pred             cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH-HHHHHcCCcCCcceecCCC
Q 024152          102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPD  180 (271)
Q Consensus       102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~  180 (271)
                      +-|.+|+..+.     +|+++.|.||||+|||||++.+++...|..|.|.|-+..-...+ ...+.+-|.-...-+-..+
T Consensus        16 ~lf~~L~f~l~-----~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL   90 (209)
T COG4133          16 TLFSDLSFTLN-----AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL   90 (209)
T ss_pred             eeecceeEEEc-----CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence            45667776555     99999999999999999999999999999999666543322222 2344444554555556677


Q ss_pred             CHHHHHHHHHHHHhcCC-------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------------------HH
Q 024152          181 CGEQALSLVDTLIRSGS-------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM--------------------SQ  233 (271)
Q Consensus       181 ~~~e~~~~~~~l~~~~~-------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l--------------------~~  233 (271)
                      ++.|++.+..++....+       +..|-+..+..+. -..+  +.|+++|+..+|..                    ..
T Consensus        91 Ta~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp-~~~L--SAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a  167 (209)
T COG4133          91 TALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP-VGQL--SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA  167 (209)
T ss_pred             hHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccc-hhhc--chhHHHHHHHHHHHcCCCCceeecCcccccCHHHHH
Confidence            88888888766543210       1112122222111 1112  33777777777765                    12


Q ss_pred             HHHHHHHHHhhcCcEEEEEcccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .+..+...-...|--|++++|....
T Consensus       168 ~l~~l~~~H~~~GGiVllttHq~l~  192 (209)
T COG4133         168 LLTALMAAHAAQGGIVLLTTHQPLP  192 (209)
T ss_pred             HHHHHHHHHhcCCCEEEEecCCccC
Confidence            3334433334567788888886543

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.04  E-value=9e-10  Score=104.95  Aligned_cols=60  Identities=20%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-HHHHHHcCCcCCcc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-PSLAETIGVKTENL  174 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~~~~~~~g~~~~~~  174 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.+.+.+.+.. .. ..+.+.+++.+|+.
T Consensus        25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~   86 (490)
T PRK10938         25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRN   86 (490)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCc
Confidence            57799999999999999999999999999998898654332211 11 23345678888764

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.04  E-value=1.7e-09  Score=93.23  Aligned_cols=71  Identities=27%  Similarity=0.372  Sum_probs=52.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+ +.+..   ....+.+.+++.+++..++. .++.+++.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~   96 (236)
T cd03253          23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI-DGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIR   96 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE-CCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHh
Confidence            57799999999999999999999999999999998654 43221   12234556888888866553 46665554

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.04  E-value=4e-10  Score=95.06  Aligned_cols=39  Identities=33%  Similarity=0.569  Sum_probs=35.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      -+++|++++|.|+||+|||||++.|++...++.|.|.+.
T Consensus        27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~   65 (204)
T cd03250          27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP   65 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEc
Confidence            567999999999999999999999999999999986543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.03  E-value=8.9e-10  Score=95.70  Aligned_cols=72  Identities=13%  Similarity=0.194  Sum_probs=53.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~---~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|+|+||+|||||++.+++...   +..|.|. ++++...   ...+.+.+++.+|...++. .++.+++.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~  101 (246)
T PRK14269         24 QIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE-IEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISY  101 (246)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE-ECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhh
Confidence            566999999999999999999999999874   4678755 4443221   1244567889998876665 577777654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.03  E-value=8.2e-10  Score=96.74  Aligned_cols=72  Identities=22%  Similarity=0.294  Sum_probs=52.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...     +..|.|.+ +.+...    . ..+.+.+++.+|+...+. .++.+
T Consensus        35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~  112 (260)
T PRK10744         35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL-DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYD  112 (260)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE-CCEEccccccchHHHhcceEEEecCCccCc-CcHHH
Confidence            677999999999999999999999999876     35787554 432221    1 234567888888876555 57766


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       113 nl~~  116 (260)
T PRK10744        113 NIAF  116 (260)
T ss_pred             HHhh
Confidence            6554

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.03  E-value=9.3e-10  Score=95.99  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...+.     .|.|.| +.+..    .. ..+.+.+++.+|+...+. .++.+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  106 (254)
T PRK14273         29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY-EGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYD  106 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE-CCEecccccccHHHHhhceEEEeecccccc-CcHHH
Confidence            56799999999999999999999999998763     677554 43321    11 234566889988876663 67777


Q ss_pred             HHHHH
Q 024152          185 ALSLV  189 (271)
Q Consensus       185 ~~~~~  189 (271)
                      ++.+.
T Consensus       107 ni~~~  111 (254)
T PRK14273        107 NISYG  111 (254)
T ss_pred             HHHHH
Confidence            66543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.03  E-value=9.9e-10  Score=95.66  Aligned_cols=73  Identities=19%  Similarity=0.268  Sum_probs=53.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...+.     .|.|. ++.+...    . ..+.+.+++.+|+..+++ .++.+
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  103 (251)
T PRK14249         26 DFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVL-LDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFD  103 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEE-ECCEEccccccChHHhhceEEEEecCCccCc-CcHHH
Confidence            56699999999999999999999999998876     47654 4443221    1 234567889999877665 37777


Q ss_pred             HHHHH
Q 024152          185 ALSLV  189 (271)
Q Consensus       185 ~~~~~  189 (271)
                      ++.+.
T Consensus       104 nl~~~  108 (251)
T PRK14249        104 NVAFG  108 (251)
T ss_pred             HHhhH
Confidence            66543

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.03  E-value=6.5e-10  Score=98.08  Aligned_cols=59  Identities=15%  Similarity=0.207  Sum_probs=42.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL  174 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~  174 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+ +++..........+++.+|+.
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~i~~v~q~~   87 (272)
T PRK15056         29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI-LGQPTRQALQKNLVAYVPQSE   87 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEEhHHhhccceEEEecccc
Confidence            56699999999999999999999999999888888554 433221111122466766654

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.03  E-value=1.5e-09  Score=94.42  Aligned_cols=72  Identities=25%  Similarity=0.326  Sum_probs=47.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHH--HhhcCCeEEEEcCCCCC--CH-HHHH-HcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFIDAEHAL--DP-SLAE-TIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~--~~~~~g~v~~~~~e~~~--~~-~~~~-~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++.  ..+.+|.|.+ +.....  .. .+.+ .+++.+|+...+...+..+++.
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~  106 (252)
T CHL00131         29 SINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF-KGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLR  106 (252)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEE-CCEEcccCChhhhheeeEEEEeccccccccccHHHHHH
Confidence            5779999999999999999999999997  3567888554 432211  11 1111 2455666655555556665544

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.03  E-value=6.4e-10  Score=91.74  Aligned_cols=137  Identities=18%  Similarity=0.130  Sum_probs=90.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      ++.+|+++.+.||+|||||||++.+|+...|..|.+...+. ....+  ...-|+++|+..+.+..++-++.++..++..
T Consensus        27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r-~i~gP--gaergvVFQ~~~LlPWl~~~dNvafgL~l~G  103 (259)
T COG4525          27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR-RIEGP--GAERGVVFQNEALLPWLNVIDNVAFGLQLRG  103 (259)
T ss_pred             eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE-eccCC--CccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence            78899999999999999999999999999999887554331 11111  1234789999888888888887766433210


Q ss_pred             ----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHHh
Q 024152          195 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSLS  243 (271)
Q Consensus       195 ----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~lak  243 (271)
                                ..-+.+|-+......+ --++++  |++||+-.+|+++-                     +-..|..+++
T Consensus       104 i~k~~R~~~a~q~l~~VgL~~~~~~~-i~qLSG--GmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~  180 (259)
T COG4525         104 IEKAQRREIAHQMLALVGLEGAEHKY-IWQLSG--GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ  180 (259)
T ss_pred             CCHHHHHHHHHHHHHHhCcccccccc-eEeecc--hHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence                      0111122221111111 123333  88889888888742                     2224566789


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      +.|..+++++|--.
T Consensus       181 ~tgk~~lliTH~ie  194 (259)
T COG4525         181 ETGKQVLLITHDIE  194 (259)
T ss_pred             HhCCeEEEEeccHH
Confidence            99999999999653

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.02  E-value=1.1e-09  Score=97.40  Aligned_cols=72  Identities=19%  Similarity=0.296  Sum_probs=52.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...     +..|.|.| +.+..    .. ..+++.+++.+|+..++.. ++.+
T Consensus        61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i-~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e  138 (285)
T PRK14254         61 DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF-RGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYD  138 (285)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE-CCEEccccccchHhhhccEEEEecCCccCcC-CHHH
Confidence            466999999999999999999999999876     46787554 33221    11 2345678888888765553 7777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       139 nl~~  142 (285)
T PRK14254        139 NVAY  142 (285)
T ss_pred             HHHH
Confidence            6654

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.02  E-value=1.1e-09  Score=105.29  Aligned_cols=68  Identities=26%  Similarity=0.352  Sum_probs=53.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC---CCCCHHHHHHcCCcCCcceecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE---HALDPSLAETIGVKTENLLLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e---~~~~~~~~~~~g~~~~~~~~~~~~~~~e~  185 (271)
                      -+++|+.++|+||+|+|||||++.+++...+++|.+. +++.   .. ...+++.+++.+|+..+++. +..|+
T Consensus       357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~-TI~eN  427 (529)
T TIGR02868       357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT-LDGVSVSSL-QDELRRRISVFAQDAHLFDT-TVRDN  427 (529)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEhhhH-HHHHHhheEEEccCcccccc-cHHHH
Confidence            6789999999999999999999999999999999855 4432   23 45677889999998776643 34443

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.02  E-value=2.7e-10  Score=111.48  Aligned_cols=146  Identities=13%  Similarity=0.101  Sum_probs=93.7

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG  182 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~  182 (271)
                      -|+.+.+  -+++|++++|.||||+|||||++.+++...+.   .|.| ++++.......+.+.+++.+|+..+.+..++
T Consensus        40 iL~~vs~--~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i-~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV  116 (617)
T TIGR00955        40 LLKNVSG--VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV-LLNGMPIDAKEMRAISAYVQQDDLFIPTLTV  116 (617)
T ss_pred             cccCCEE--EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECCHHHHhhhceeeccccccCccCcH
Confidence            3444443  78899999999999999999999999987653   4664 4554433334566778999999888888899


Q ss_pred             HHHHHHHHHHHhcCC-------------ccEEEEcch-hhhcCC----CccCCccchhhHHHHHHHHH------------
Q 024152          183 EQALSLVDTLIRSGS-------------VDVVVVDSV-AALVPK----GELDGEMGDAHMAMQARLMS------------  232 (271)
Q Consensus       183 ~e~~~~~~~l~~~~~-------------~~lvvID~l-~~~~~~----~~l~~~~g~~~~~~~~~~l~------------  232 (271)
                      .|++.+...+.....             ++.+-++.. ......    ..++  .|+++|...++++.            
T Consensus       117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LS--gGqrkRvsia~aL~~~p~vlllDEPt  194 (617)
T TIGR00955       117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLS--GGERKRLAFASELLTDPPLLFCDEPT  194 (617)
T ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcC--cchhhHHHHHHHHHcCCCEEEeeCCC
Confidence            988876543211000             001101111 111111    1233  38899999999883            


Q ss_pred             ---------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 ---------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ---------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                               ...+.|+++++ .+.+||+++|...
T Consensus       195 sgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~  227 (617)
T TIGR00955       195 SGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPS  227 (617)
T ss_pred             cchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCC
Confidence                     34445666554 4899999988753

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.02  E-value=2.1e-09  Score=93.57  Aligned_cols=72  Identities=14%  Similarity=0.192  Sum_probs=53.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|+|+||+|||||++.|++...+     ..|.|.+ +.+...    . ....+.+++.+|+..++. .++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e  103 (251)
T PRK14270         26 PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLL-DGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYD  103 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEE-CCEecccccccHHHHHhheEEEecCCCcCC-CcHHH
Confidence            5669999999999999999999999998764     5677554 433221    1 234567899998876665 67777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++.+
T Consensus       104 nl~~  107 (251)
T PRK14270        104 NVAY  107 (251)
T ss_pred             HHHh
Confidence            6654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=7.9e-10  Score=105.78  Aligned_cols=138  Identities=17%  Similarity=0.221  Sum_probs=83.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCC--CH--HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHAL--DP--SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~--~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||+|||||++.|++...+  ..|.|.| +.....  ..  .+.+.+++.+|+..++...++.+++.+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  105 (506)
T PRK13549         27 KVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF-EGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFL  105 (506)
T ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE-CCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhh
Confidence            5679999999999999999999999998875  6787554 433221  11  223458888888776666777776654


Q ss_pred             HHHHH-----------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152          189 VDTLI-----------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QA  234 (271)
Q Consensus       189 ~~~l~-----------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~  234 (271)
                      .....           .  ..-+..+-++...... ...++  .|++|+...++++.                     ..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l  182 (506)
T PRK13549        106 GNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-VGNLG--LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVL  182 (506)
T ss_pred             cccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence            21100           0  0001111111111111 12233  38888888888873                     23


Q ss_pred             HHHHHHHHhhcCcEEEEEccccc
Q 024152          235 LRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       235 ~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ...|..++ +.+.+||+++|...
T Consensus       183 ~~~l~~l~-~~~~tvi~~tH~~~  204 (506)
T PRK13549        183 LDIIRDLK-AHGIACIYISHKLN  204 (506)
T ss_pred             HHHHHHHH-HCCCEEEEEeCcHH
Confidence            33444443 45899999999753

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.02  E-value=1e-09  Score=96.71  Aligned_cols=72  Identities=19%  Similarity=0.347  Sum_probs=52.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...     +..|.|.| +.+..    .. ..+.+.+++.+|+..++. .++.+
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e  112 (269)
T PRK14259         35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF-DGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYE  112 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE-CCEEcccccCCHHHHhhceEEEccCCccch-hhHHH
Confidence            577999999999999999999999999876     46787554 43321    11 244556888888876665 37766


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++.+
T Consensus       113 nl~~  116 (269)
T PRK14259        113 NIAF  116 (269)
T ss_pred             HHhh
Confidence            6654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.02  E-value=7.5e-10  Score=106.48  Aligned_cols=144  Identities=19%  Similarity=0.171  Sum_probs=88.4

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcc--eecC
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENL--LLAQ  178 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~--~~~~  178 (271)
                      |+.+.-  -+++|++++|.|+||+|||||++.+++... .+|.|.| +.....  . .   .+.+.+++.+|+.  .++.
T Consensus       302 l~~isl--~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~  377 (529)
T PRK15134        302 VKNISF--TLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWF-DGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP  377 (529)
T ss_pred             eeccee--EEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEE-CCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence            444433  678999999999999999999999999874 7787554 432211  1 1   1245688888875  3455


Q ss_pred             CCCHHHHHHHHHHHHh--------c----CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-------------
Q 024152          179 PDCGEQALSLVDTLIR--------S----GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-------------  232 (271)
Q Consensus       179 ~~~~~e~~~~~~~l~~--------~----~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------  232 (271)
                      ..++.+++........        .    .-++.+-++ ...... -..+++  |++|+...++++.             
T Consensus       378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~  454 (529)
T PRK15134        378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY-PAEFSG--GQRQRIAIARALILKPSLIILDEPTS  454 (529)
T ss_pred             cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-CccCCH--HHHHHHHHHHHHhCCCCEEEeeCCcc
Confidence            5677777654321100        0    001111121 111111 133443  8999999998883             


Q ss_pred             --------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                              .+...|..++++.+++||+++|-..
T Consensus       455 ~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~  487 (529)
T PRK15134        455 SLDKTVQAQILALLKSLQQKHQLAYLFISHDLH  487 (529)
T ss_pred             ccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence                    2344555556667999999999763

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.02  E-value=1.1e-09  Score=104.76  Aligned_cols=139  Identities=18%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC--HHHHHHcCCcCCcc---eecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD--PSLAETIGVKTENL---LLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~--~~~~~~~g~~~~~~---~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.+++...+++|.|.|.+.... ..  ..+++.+++.+|..   .++...++.+++..
T Consensus       274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~  353 (501)
T PRK10762        274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL  353 (501)
T ss_pred             EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence            57799999999999999999999999999888888655432211 11  12344688888875   34455677766543


Q ss_pred             HHH-HH------------h---cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152          189 VDT-LI------------R---SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-------------------  232 (271)
Q Consensus       189 ~~~-l~------------~---~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------------  232 (271)
                      ... ..            .   ..-+..+-++ ...... -..++  .|++|+...++++.                   
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~  430 (501)
T PRK10762        354 TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-IGLLS--GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA  430 (501)
T ss_pred             hhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-hhhCC--HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhH
Confidence            210 00            0   0001111111 111111 12333  38889988888873                   


Q ss_pred             --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                        ...+.|..+++ .+.+||+++|...
T Consensus       431 ~~~l~~~l~~~~~-~g~tviivtHd~~  456 (501)
T PRK10762        431 KKEIYQLINQFKA-EGLSIILVSSEMP  456 (501)
T ss_pred             HHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence              23334444443 4899999999753

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.02  E-value=1.8e-09  Score=94.09  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=53.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|+|+||+|||||++.+++...  +   ..|.|. ++.....    . ..+.+.+++.+|+...+...++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  104 (252)
T PRK14256         26 DFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL-LDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYD  104 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE-ECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHH
Confidence            567999999999999999999999999875  3   467754 4443221    1 234566888888877776677777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       105 nl~~  108 (252)
T PRK14256        105 NVIA  108 (252)
T ss_pred             HHHh
Confidence            6653

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.01  E-value=1.7e-09  Score=94.82  Aligned_cols=72  Identities=15%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...+     ..|.|.| +.+...    . ..+.+.+++.+|+..++ ..++.+
T Consensus        30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~e  107 (261)
T PRK14263         30 PIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF-LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFD  107 (261)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE-CCEeccccccchHhhhhceEEEecCCccc-cccHHH
Confidence            5779999999999999999999999999875     5777555 433221    1 23456688888887665 467766


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++.+
T Consensus       108 nl~~  111 (261)
T PRK14263        108 NVAF  111 (261)
T ss_pred             HHHH
Confidence            6654

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.01  E-value=9.6e-10  Score=93.81  Aligned_cols=70  Identities=21%  Similarity=0.256  Sum_probs=51.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.| +.+..   ....+.+.+++.+|...++. .++.+++
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl   98 (221)
T cd03244          26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILI-DGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNL   98 (221)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE-CCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHh
Confidence            57799999999999999999999999999999998654 43321   12244567888888766543 3554443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.01  E-value=6.4e-10  Score=107.00  Aligned_cols=63  Identities=13%  Similarity=0.155  Sum_probs=46.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+.+|++++|.|+||+|||||++.+++...+..|.+.|.. .        ..+++.+|....+...++.+.+
T Consensus        23 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~-~--------~~i~~~~q~~~~~~~~tv~e~l   85 (530)
T PRK15064         23 KFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP-N--------ERLGKLRQDQFAFEEFTVLDTV   85 (530)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-C--------CEEEEEeccCCcCCCCcHHHHH
Confidence            5679999999999999999999999999988888865432 1        1355666655544445555444

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.00  E-value=1.2e-09  Score=94.99  Aligned_cols=72  Identities=14%  Similarity=0.183  Sum_probs=52.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...+     ..|.|. ++.+...     ...+.+.+++.+|+...+. .++.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~  102 (250)
T PRK14240         25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL-LDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYD  102 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEccccccchHHHhccEEEEecCCccCc-ccHHH
Confidence            5679999999999999999999999997652     467754 4443221     1234556888888876665 67766


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       103 ni~~  106 (250)
T PRK14240        103 NVAY  106 (250)
T ss_pred             HHHH
Confidence            6654

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.00  E-value=1.9e-09  Score=93.87  Aligned_cols=73  Identities=16%  Similarity=0.218  Sum_probs=53.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...+.     .|.|. ++.+...    . ..+.+.+++.+|+...+...++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e  104 (252)
T PRK14272         26 DVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRIL-LDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD  104 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEE-ECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHH
Confidence            56699999999999999999999999988653     57754 4443221    1 234556888888877776667777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       105 nl~~  108 (252)
T PRK14272        105 NVVA  108 (252)
T ss_pred             HHHH
Confidence            6654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.00  E-value=1.7e-09  Score=95.39  Aligned_cols=72  Identities=14%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC-----CCHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA-----LDPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~-----~~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...     +..|.|.| +....     ....+.+.+++.+|+..++. .++.+
T Consensus        46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  123 (271)
T PRK14238         46 DIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILY-RDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYD  123 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEE-CCEEcccccccHHHHhhhEEEEecCCcccc-ccHHH
Confidence            466999999999999999999999999986     47787654 33221     11234567889898876655 37766


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++.+
T Consensus       124 ni~~  127 (271)
T PRK14238        124 NVTY  127 (271)
T ss_pred             HHHH
Confidence            6654

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.00  E-value=2.6e-09  Score=93.49  Aligned_cols=72  Identities=21%  Similarity=0.235  Sum_probs=52.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...  +   ..|.|. ++.+...    . ..+.+.+++.+|+..++.. ++.+
T Consensus        34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~e  111 (259)
T PRK14274         34 SIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN-YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFD  111 (259)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE-ECCEEccccccCHHHHhhceEEEecCCccccc-CHHH
Confidence            467999999999999999999999999876  3   367755 4443221    1 2345568898888766653 7766


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++.+
T Consensus       112 nl~~  115 (259)
T PRK14274        112 NVAY  115 (259)
T ss_pred             HHHh
Confidence            6654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.99  E-value=1.5e-09  Score=103.66  Aligned_cols=73  Identities=12%  Similarity=0.232  Sum_probs=52.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C--HHHHHHcCCcCCcce---ecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D--PSLAETIGVKTENLL---LAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~--~~~~~~~g~~~~~~~---~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.+++...+.+|.|.|.+..-.. .  ......+++.+|...   .+...++.+++.
T Consensus       275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~  353 (501)
T PRK11288        275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNIN  353 (501)
T ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhc
Confidence            577999999999999999999999999998888986553322111 1  123345788888753   455566666543

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.99  E-value=3.7e-09  Score=93.00  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=51.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...     +..|.|.+ +.+..    .. ..+.+.+++.+|+...+. .++.+
T Consensus        43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  120 (268)
T PRK14248         43 DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILY-EGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYN  120 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEE-CCEEcccccccHHHHhccEEEEecCCccCc-ccHHH
Confidence            566999999999999999999999999764     46787554 43221    11 134556888888876654 36666


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       121 nl~~  124 (268)
T PRK14248        121 NITH  124 (268)
T ss_pred             HHHH
Confidence            5543

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=3.1e-09  Score=100.29  Aligned_cols=136  Identities=16%  Similarity=0.211  Sum_probs=85.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceecCC------------C
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLAQP------------D  180 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~~~------------~  180 (271)
                      -+++|+.++|+|++|||||||+..+++...+..|.+.+.+.+  ......+.+.+.+.+|+.+++..            .
T Consensus       343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~  422 (559)
T COG4988         343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA  422 (559)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcC
Confidence            577999999999999999999999999999999986655433  23334788899999988766642            1


Q ss_pred             CHHHHHHHHHHHHhcCCc-cEEEE-cchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHH
Q 024152          181 CGEQALSLVDTLIRSGSV-DVVVV-DSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRK  237 (271)
Q Consensus       181 ~~~e~~~~~~~l~~~~~~-~lvvI-D~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~  237 (271)
                      +.+++.+.+.+.    ++ +++-- |.+..........-++|+.||...+|++                     ..+...
T Consensus       423 s~e~i~~al~~a----~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~  498 (559)
T COG4988         423 SDEEIIAALDQA----GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA  498 (559)
T ss_pred             CHHHHHHHHHHh----cHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH
Confidence            223333322221    11 11100 1111111111112234788888888887                     234455


Q ss_pred             HHHHHhhcCcEEEEEcccc
Q 024152          238 LSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~  256 (271)
                      |.+++++  .||++++|-.
T Consensus       499 l~~l~~~--ktvl~itHrl  515 (559)
T COG4988         499 LQELAKQ--KTVLVITHRL  515 (559)
T ss_pred             HHHHHhC--CeEEEEEcCh
Confidence            5555554  7999999965

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.99  E-value=2.2e-09  Score=93.33  Aligned_cols=72  Identities=18%  Similarity=0.173  Sum_probs=52.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC----CCHHHHHHcCCcCCcceecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA----LDPSLAETIGVKTENLLLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~----~~~~~~~~~g~~~~~~~~~~~~~~~e~  185 (271)
                      -+++|++++|.|+||+|||||++.|++...+     ..|.|. ++....    ....+.+.+++.+|+...+. .++.++
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~  102 (249)
T PRK14253         25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT-MDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYEN  102 (249)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE-ECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHH
Confidence            5669999999999999999999999998775     367754 443221    11244567889998876665 677666


Q ss_pred             HHH
Q 024152          186 LSL  188 (271)
Q Consensus       186 ~~~  188 (271)
                      +..
T Consensus       103 l~~  105 (249)
T PRK14253        103 VAY  105 (249)
T ss_pred             HHh
Confidence            654

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.99  E-value=3.6e-09  Score=89.47  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=51.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC--CCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~--~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.+.|.+...  .....+.+.+++.+|+..++. .++.+++
T Consensus        30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l  102 (207)
T cd03369          30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNL  102 (207)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHh
Confidence            5779999999999999999999999999999999865533211  111234566888888765554 3555554

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.99  E-value=1.5e-09  Score=103.76  Aligned_cols=139  Identities=14%  Similarity=0.163  Sum_probs=83.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCC--CH--HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHAL--DP--SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~--~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|+|+||+|||||++.|++...+  ..|.|.| +.+...  ..  ...+.+++.+|....+...++.+++.+
T Consensus        23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~  101 (500)
T TIGR02633        23 EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW-SGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFL  101 (500)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE-CCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHh
Confidence            6779999999999999999999999998875  5777554 432221  11  123458888888766666777776654


Q ss_pred             HHHHHh--------------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152          189 VDTLIR--------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q  233 (271)
Q Consensus       189 ~~~l~~--------------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~  233 (271)
                      ......              ..-++.+-++....-.+-..++  .|++|+...++++.                     .
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~  179 (500)
T TIGR02633       102 GNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYG--GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI  179 (500)
T ss_pred             hccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence            321100              0000111111100000012333  38899999888873                     2


Q ss_pred             HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ....|+.++ +.+.+||+++|...
T Consensus       180 l~~~l~~l~-~~g~tviiitHd~~  202 (500)
T TIGR02633       180 LLDIIRDLK-AHGVACVYISHKLN  202 (500)
T ss_pred             HHHHHHHHH-hCCCEEEEEeCcHH
Confidence            233344443 56899999999763

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.99  E-value=1.6e-09  Score=95.86  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=53.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----CHHHHHHcCCcCCcceecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----DPSLAETIGVKTENLLLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~~~~~~~~g~~~~~~~~~~~~~~~e~  185 (271)
                      -+++|++++|.|+||+|||||++.|++...+     ..|.|.+ +.+...    ...+.+.+++.+|...+++ .++.++
T Consensus        43 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en  120 (276)
T PRK14271         43 GFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLL-GGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDN  120 (276)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEE-CCEEccccchhHHHhhheEEeccCCccCC-ccHHHH
Confidence            5679999999999999999999999998875     5777554 433221    1234567889998876665 577766


Q ss_pred             HHH
Q 024152          186 LSL  188 (271)
Q Consensus       186 ~~~  188 (271)
                      +..
T Consensus       121 i~~  123 (276)
T PRK14271        121 VLA  123 (276)
T ss_pred             HHH
Confidence            554

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.99  E-value=2.7e-09  Score=92.66  Aligned_cols=63  Identities=25%  Similarity=0.358  Sum_probs=44.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCC--CH-HH-HHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~--~~-~~-~~~~g~~~~~~~~~~  178 (271)
                      -+++|++++|+|+||+|||||++.+++..  .+..|.+. ++.+...  .. .. ...+++.++....+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~   91 (248)
T PRK09580         23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE-FKGKDLLELSPEDRAGEGIFMAFQYPVEIP   91 (248)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEE-ECCCccccCCHHHHhhcceEEEecCchhcc
Confidence            57799999999999999999999999985  47788754 5443321  11 12 234667676654433

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.98  E-value=1.7e-09  Score=92.62  Aligned_cols=71  Identities=23%  Similarity=0.320  Sum_probs=51.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||+..+++...+..|.|. ++.+...   ...+.+.+++.+|+..++. .++.+++.
T Consensus        36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~  109 (226)
T cd03248          36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL-LDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIA  109 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE-ECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhc
Confidence            5779999999999999999999999999988999855 4443221   1234566888888765543 35555443

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.98  E-value=6.2e-10  Score=108.46  Aligned_cols=154  Identities=18%  Similarity=0.140  Sum_probs=104.0

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh---cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~---~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      |+.+.|  -+.+|++++|.||+|+|||||+..+++....   .+|. +.++++....+.+.+..|++.|+-.+....|++
T Consensus        46 L~~vsg--~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~-ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~  122 (613)
T KOG0061|consen   46 LKGVSG--TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGE-ILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR  122 (613)
T ss_pred             eeCcEE--EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEE-EEECCccCchhhhhheeEEEcccccccccccHH
Confidence            344444  7889999999999999999999999998874   4565 555666666667888899999998888889999


Q ss_pred             HHHHHHHHHHhcCC----ccEEEEcchhhhcC----CCc-------cCCccchhhHHHHHHHH-----------------
Q 024152          184 QALSLVDTLIRSGS----VDVVVVDSVAALVP----KGE-------LDGEMGDAHMAMQARLM-----------------  231 (271)
Q Consensus       184 e~~~~~~~l~~~~~----~~lvvID~l~~~~~----~~~-------l~~~~g~~~~~~~~~~l-----------------  231 (271)
                      |.+.....+.-...    .+...||.+....+    ++.       -.-+.|+++|+..+.++                 
T Consensus       123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD  202 (613)
T KOG0061|consen  123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD  202 (613)
T ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence            88776554421110    11112222211111    000       01233788888888886                 


Q ss_pred             ----HHHHHHHHHHHhhcCcEEEEEcccccccchhhh
Q 024152          232 ----SQALRKLSHSLSLSQTILIFINQVFSINLNKII  264 (271)
Q Consensus       232 ----~~~~r~L~~lake~~~~Vi~~sql~~~~~~~~l  264 (271)
                          .+..+.|+++|++ |++||++-|.-...+...+
T Consensus       203 S~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lF  238 (613)
T KOG0061|consen  203 SFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELF  238 (613)
T ss_pred             hhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHH
Confidence                2456678888999 9999999887654444333

>PLN03211 ABC transporter G-25; Provisional

Probab=98.98  E-value=6.6e-10  Score=109.25  Aligned_cols=145  Identities=18%  Similarity=0.192  Sum_probs=91.4

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~--~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      -|+.+..  -+++|++++|.||||+|||||++.+++...+.  +|.|.+ +++... ....+.+++.+|+..+....++.
T Consensus        83 iL~~vs~--~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~i-nG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~  158 (659)
T PLN03211         83 ILNGVTG--MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILA-NNRKPT-KQILKRTGFVTQDDILYPHLTVR  158 (659)
T ss_pred             eeeCCEE--EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEE-CCEECc-hhhccceEEECcccccCCcCCHH
Confidence            3444443  78899999999999999999999999987764  677554 443222 23345689999988877778888


Q ss_pred             HHHHHHHHHHhcCCc----cEEEEcchhhhcC-------------CCccCCccchhhHHHHHHHHH--------------
Q 024152          184 QALSLVDTLIRSGSV----DVVVVDSVAALVP-------------KGELDGEMGDAHMAMQARLMS--------------  232 (271)
Q Consensus       184 e~~~~~~~l~~~~~~----~lvvID~l~~~~~-------------~~~l~~~~g~~~~~~~~~~l~--------------  232 (271)
                      |.+.+...+......    ..-.++.+....+             ...++  .|+++|...++++.              
T Consensus       159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--gGerqRv~ia~aL~~~P~iLlLDEPtsg  236 (659)
T PLN03211        159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGIS--GGERKRVSIAHEMLINPSLLILDEPTSG  236 (659)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcC--hhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence            887765432100000    0000111111100             11233  48999999998873              


Q ss_pred             -------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 -------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 -------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                             ...+.|+++++ .+.|||+++|...
T Consensus       237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~  267 (659)
T PLN03211        237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPS  267 (659)
T ss_pred             cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCC
Confidence                   33344555444 5899999999754

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.98  E-value=4.5e-09  Score=91.42  Aligned_cols=72  Identities=17%  Similarity=0.207  Sum_probs=52.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCCC-----HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~~-----~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...+     ..|.+. ++.+....     ..+.+.+++.+|....+. .++.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~-i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e  102 (250)
T PRK14262         25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIY-FKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYD  102 (250)
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE-ECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHH
Confidence            5679999999999999999999999998763     677755 44432211     134567888888876665 67766


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       103 ~l~~  106 (250)
T PRK14262        103 NVAF  106 (250)
T ss_pred             HHHH
Confidence            6654

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.98  E-value=3e-09  Score=93.96  Aligned_cols=72  Identities=14%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...+     ..|.|. ++.+...    . ..+.+.+++.+|+..++. .++.+
T Consensus        42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~  119 (274)
T PRK14265         42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL-YRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYE  119 (274)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE-ECCEecccccchhHHHhhcEEEEccCCcccc-ccHHH
Confidence            4669999999999999999999999998753     467754 4443221    1 234567888998876654 36666


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       120 nl~~  123 (274)
T PRK14265        120 NIAF  123 (274)
T ss_pred             HHHh
Confidence            6544

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.98  E-value=4.2e-09  Score=91.68  Aligned_cols=72  Identities=15%  Similarity=0.143  Sum_probs=51.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH---hh--cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA---QR--QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~---~~--~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++..   .+  .+|.|.+ ++....     ...+.+.+++.+|+..++. .++.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~  102 (250)
T PRK14245         25 EIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRI-DGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFE  102 (250)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEE-CCEecccccccHHHHhhheEEEecCCccCc-ccHHH
Confidence            46699999999999999999999999863   22  3677554 433221     1244567899998876654 47776


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       103 nl~~  106 (250)
T PRK14245        103 NVAY  106 (250)
T ss_pred             HHHH
Confidence            6654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.98  E-value=9.2e-10  Score=105.89  Aligned_cols=140  Identities=23%  Similarity=0.249  Sum_probs=84.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC--C-HH---HH-HHcCCcCCcce--ecCCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL--D-PS---LA-ETIGVKTENLL--LAQPD  180 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~--~-~~---~~-~~~g~~~~~~~--~~~~~  180 (271)
                      -+.+|++++|+||||+|||||++.|++...+     ..|.|.| +.+...  . ..   .+ +.+++.+|+..  .....
T Consensus        31 ~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~  109 (529)
T PRK15134         31 QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRF-HGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH  109 (529)
T ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEE-CCEecccCCHHHHHHHhcCceEEEecCchhhcCchh
Confidence            6779999999999999999999999999875     5777554 433221  1 11   11 35888888753  33445


Q ss_pred             CHHHHHHHHHHHH---------h--cCCccEEEEcchhhh--cCCCccCCccchhhHHHHHHHHH---------------
Q 024152          181 CGEQALSLVDTLI---------R--SGSVDVVVVDSVAAL--VPKGELDGEMGDAHMAMQARLMS---------------  232 (271)
Q Consensus       181 ~~~e~~~~~~~l~---------~--~~~~~lvvID~l~~~--~~~~~l~~~~g~~~~~~~~~~l~---------------  232 (271)
                      ++.+++.......         .  ..-++.+-++.+...  ..-..+++  |++|++..++++.               
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg--Ge~qrv~iAraL~~~p~llllDEPt~~L  187 (529)
T PRK15134        110 TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG--GERQRVMIAMALLTRPELLIADEPTTAL  187 (529)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH--HHHHHHHHHHHHhcCCCEEEEcCCCCcc
Confidence            6665543211110         0  000111222221100  01133443  8999999999883               


Q ss_pred             ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 ------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                            .+...|.+++++.+.+||+++|-..
T Consensus       188 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~  218 (529)
T PRK15134        188 DVSVQAQILQLLRELQQELNMGLLFITHNLS  218 (529)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence                  2344555555667899999999763

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.97  E-value=2.3e-09  Score=93.37  Aligned_cols=73  Identities=16%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|+|+||+|||||++.+++...  +   ..|.|.+ +.+...     ...+.+.+++.+|+..++. .++.+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  104 (252)
T PRK14239         27 DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVY-NGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYE  104 (252)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEE-CCEECcCcccchHhhhhcEEEEecCCccCc-CcHHH
Confidence            567999999999999999999999999743  4   3677554 433221     1234567889998877665 67777


Q ss_pred             HHHHH
Q 024152          185 ALSLV  189 (271)
Q Consensus       185 ~~~~~  189 (271)
                      ++...
T Consensus       105 nl~~~  109 (252)
T PRK14239        105 NVVYG  109 (252)
T ss_pred             HHHHH
Confidence            66543

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=1.2e-09  Score=104.47  Aligned_cols=139  Identities=16%  Similarity=0.210  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcCCCC-CC--HHHHHHcCCcCCcc---eecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHA-LD--PSLAETIGVKTENL---LLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~e~~-~~--~~~~~~~g~~~~~~---~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.|++... +.+|.|.|.+..-. ..  ..+...+++.+|+.   .++...++.+++.
T Consensus       284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~  363 (506)
T PRK13549        284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT  363 (506)
T ss_pred             EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence            678999999999999999999999999987 47888655432211 11  12334578888874   2445567766654


Q ss_pred             HHH--HHHh-------------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152          188 LVD--TLIR-------------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-------------------  232 (271)
Q Consensus       188 ~~~--~l~~-------------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------------  232 (271)
                      +..  .+..             ..-+..+-++ ...... ...++  .|++|+...++++.                   
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~  440 (506)
T PRK13549        364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-IARLS--GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA  440 (506)
T ss_pred             hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-cccCC--HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhH
Confidence            321  0100             0001111111 010001 12333  38999999988873                   


Q ss_pred             --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 --QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 --~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                        .+.+.|..++ +.+.+||++||...
T Consensus       441 ~~~l~~~l~~l~-~~g~tvi~~sHd~~  466 (506)
T PRK13549        441 KYEIYKLINQLV-QQGVAIIVISSELP  466 (506)
T ss_pred             HHHHHHHHHHHH-HCCCEEEEECCCHH
Confidence              2223344334 45999999999764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.97  E-value=3.1e-09  Score=93.31  Aligned_cols=72  Identities=14%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC-----CCHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA-----LDPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~-----~~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...+     .+|.|. ++.+..     ....+.+.+++.+|+..++. .++.+
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  109 (264)
T PRK14243         32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT-FHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYD  109 (264)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE-ECCEEccccccChHHHhhhEEEEccCCcccc-ccHHH
Confidence            5669999999999999999999999998752     567754 444322     11244566888888876554 36666


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       110 nl~~  113 (264)
T PRK14243        110 NIAY  113 (264)
T ss_pred             HHHh
Confidence            6543

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.97  E-value=2.9e-09  Score=93.22  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=53.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...+     ..|.|.+ +....    .. ..+...+++.+|+..++. .++.+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e  106 (259)
T PRK14260         29 DIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDF-FGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYE  106 (259)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEE-CCEeccccccchHhhhhheEEEecccccCC-ccHHH
Confidence            5679999999999999999999999998774     3677554 43221    11 234567889998877665 67777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       107 nl~~  110 (259)
T PRK14260        107 NVAY  110 (259)
T ss_pred             HHHH
Confidence            6654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.96  E-value=3.9e-09  Score=91.87  Aligned_cols=72  Identities=14%  Similarity=0.207  Sum_probs=52.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...     +..|.|.+ +.....    . ..+.+.+++.+|+..++. .++.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e  103 (251)
T PRK14251         26 DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF-EGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYD  103 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE-CCEEcccccchHHHhhccEEEEecCCccCC-CcHHH
Confidence            567999999999999999999999999886     35777554 433221    1 234556888888876664 57777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       104 nl~~  107 (251)
T PRK14251        104 NVAY  107 (251)
T ss_pred             HHHH
Confidence            6654

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.96  E-value=2.8e-09  Score=93.99  Aligned_cols=72  Identities=21%  Similarity=0.245  Sum_probs=52.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...+     ..|.|.+ +.....    . ..+.+.+++.+|+..++.. ++.+
T Consensus        47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i-~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e  124 (272)
T PRK14236         47 RIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL-DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYE  124 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE-CCEECcccccCHHHHhccEEEEecCCccCcc-cHHH
Confidence            5679999999999999999999999998763     6787554 332221    1 2345668888888766654 7777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       125 nl~~  128 (272)
T PRK14236        125 NVVY  128 (272)
T ss_pred             HHHH
Confidence            6654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.96  E-value=3.2e-09  Score=105.17  Aligned_cols=139  Identities=19%  Similarity=0.200  Sum_probs=84.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHH-
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVD-  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~-  190 (271)
                      -+++|+.++|+|++|||||||++.+++...+++|.|. +++...   ....+++.+++.+|+..+++ .|..|++...+ 
T Consensus       475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~  552 (686)
T TIGR03797       475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF-YDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP  552 (686)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE-ECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC
Confidence            6889999999999999999999999999999999855 544322   23467788999999876654 24444433211 


Q ss_pred             -------HHHhcCCccEEEEc----chhhhcCCCccCCccchhhHHHHHHHHHH-----------------HHHHHHHHH
Q 024152          191 -------TLIRSGSVDVVVVD----SVAALVPKGELDGEMGDAHMAMQARLMSQ-----------------ALRKLSHSL  242 (271)
Q Consensus       191 -------~l~~~~~~~lvvID----~l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------------~~r~L~~la  242 (271)
                             ...+.-++.- .|+    .+..........-+.|++||...+|++..                 .-+.+.+..
T Consensus       553 ~~~e~i~~al~~a~l~~-~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L  631 (686)
T TIGR03797       553 LTLDEAWEAARMAGLAE-DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL  631 (686)
T ss_pred             CCHHHHHHHHHHcCcHH-HHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence                   0011011100 000    11111111111223489999999998732                 122333334


Q ss_pred             hhcCcEEEEEcccc
Q 024152          243 SLSQTILIFINQVF  256 (271)
Q Consensus       243 ke~~~~Vi~~sql~  256 (271)
                      ++.++|+|+++|-.
T Consensus       632 ~~~~~T~IiItHr~  645 (686)
T TIGR03797       632 ERLKVTRIVIAHRL  645 (686)
T ss_pred             HHhCCeEEEEecCh
Confidence            45578999999965

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.96  E-value=8.1e-09  Score=84.49  Aligned_cols=60  Identities=22%  Similarity=0.267  Sum_probs=47.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENL  174 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~  174 (271)
                      .+..|+.++|.|.||+|||||++++++.+.|.+|.++|.+.+-...  ..+++.+.+.+|+.
T Consensus        35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDp   96 (267)
T COG4167          35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDP   96 (267)
T ss_pred             EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCC
Confidence            6779999999999999999999999999999999966655332222  24566777777754

>PRK04296 thymidine kinase; Provisional

Probab=98.96  E-value=9e-09  Score=86.09  Aligned_cols=112  Identities=18%  Similarity=0.240  Sum_probs=76.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC--CC-CCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhc
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EH-ALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS  195 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~--e~-~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~  195 (271)
                      |.++.+.|++|+||||+++.++..+...+.+|+++..  +. .....+.+++|+......   .....++...+..  ..
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~---~~~~~~~~~~~~~--~~   76 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIP---VSSDTDIFELIEE--EG   76 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceE---eCChHHHHHHHHh--hC
Confidence            7899999999999999999999998877778887732  21 112234555565444321   1345566555554  35


Q ss_pred             CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       196 ~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      .+.++|+||+++.+..                     +.+..+.+.++..+++|+++....
T Consensus        77 ~~~dvviIDEaq~l~~---------------------~~v~~l~~~l~~~g~~vi~tgl~~  116 (190)
T PRK04296         77 EKIDCVLIDEAQFLDK---------------------EQVVQLAEVLDDLGIPVICYGLDT  116 (190)
T ss_pred             CCCCEEEEEccccCCH---------------------HHHHHHHHHHHHcCCeEEEEecCc
Confidence            6789999999987631                     112234455678899999997764

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.96  E-value=2e-09  Score=93.84  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...  +   ..|.|.| +.+...     .....+.+++.+|+..++. .++.+
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e  105 (253)
T PRK14261         28 SIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILY-NGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYE  105 (253)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE-CCEEccccccchhhhhceEEEEecCCccCc-ccHHH
Confidence            566999999999999999999999999764  2   3677554 432211     1233456888888876665 37777


Q ss_pred             HHHHH
Q 024152          185 ALSLV  189 (271)
Q Consensus       185 ~~~~~  189 (271)
                      ++.+.
T Consensus       106 ni~~~  110 (253)
T PRK14261        106 NVAYG  110 (253)
T ss_pred             HHHhh
Confidence            66543

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.96  E-value=2.4e-09  Score=93.26  Aligned_cols=73  Identities=14%  Similarity=0.085  Sum_probs=51.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC---CC-HHHHHHcCCcCCcceecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA---LD-PSLAETIGVKTENLLLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~~~~~~~~e~  185 (271)
                      -+.+|++++|.|+||+|||||++.|++...     +..|.|.|.+....   .. ..+.+.+++.+|+...+.. ++.++
T Consensus        27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~n  105 (251)
T PRK14244         27 DIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDN  105 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHH
Confidence            566999999999999999999999999875     35777655332111   11 1345678888888766553 66665


Q ss_pred             HHH
Q 024152          186 LSL  188 (271)
Q Consensus       186 ~~~  188 (271)
                      +.+
T Consensus       106 i~~  108 (251)
T PRK14244        106 VAY  108 (251)
T ss_pred             HHH
Confidence            544

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.96  E-value=4.7e-09  Score=102.03  Aligned_cols=70  Identities=23%  Similarity=0.324  Sum_probs=53.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|+.++|+|++|+|||||++.+++...+.+|.|. +++..   .....+++.+++.+|+..+++ .|..+++
T Consensus       365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~-i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni  437 (582)
T PRK11176        365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL-LDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNI  437 (582)
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE-ECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHH
Confidence            5789999999999999999999999999999999855 44432   222366788999999876664 3344433

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=3.4e-09  Score=89.45  Aligned_cols=73  Identities=25%  Similarity=0.332  Sum_probs=49.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCCC--H-HH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~~--~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++.+|.||||+|||||+..|+++-  ...+|.|+ |+++....  . ++ +..+.+.+|.+.-.+-.+..+++..
T Consensus        26 ~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~-~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~  104 (251)
T COG0396          26 TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL-FDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRA  104 (251)
T ss_pred             eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEE-ECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHH
Confidence            57799999999999999999999999975  46778855 55554332  1 22 2334455676655555555555543

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.95  E-value=4.5e-09  Score=102.30  Aligned_cols=62  Identities=23%  Similarity=0.283  Sum_probs=49.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|+|++|+|||||++.+++.. +.+|.+. +++..   .....+++.+++.+|+..+++
T Consensus       372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~-i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~  436 (588)
T PRK11174        372 TLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK-INGIELRELDPESWRKHLSWVGQNPQLPH  436 (588)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE-ECCEecccCCHHHHHhheEEecCCCcCCC
Confidence            57899999999999999999999999999 8888855 54422   223467788999999876553

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.95  E-value=3.2e-09  Score=93.28  Aligned_cols=73  Identities=11%  Similarity=0.054  Sum_probs=51.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC-----C-CHHHHHHcCCcCCcceecCCCCHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA-----L-DPSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~-----~-~~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      -+++|++++|+|+||+|||||++.|++...+     ..|.|.|.+....     . ...+.+.+++.+|+..++.. ++.
T Consensus        38 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~  116 (265)
T PRK14252         38 MVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIF  116 (265)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHH
Confidence            4669999999999999999999999998764     5677655332111     1 12345668888888666654 666


Q ss_pred             HHHHH
Q 024152          184 QALSL  188 (271)
Q Consensus       184 e~~~~  188 (271)
                      +++..
T Consensus       117 eni~~  121 (265)
T PRK14252        117 ENVAY  121 (265)
T ss_pred             HHHHh
Confidence            66544

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.95  E-value=2.7e-09  Score=95.75  Aligned_cols=73  Identities=18%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+.+|++++|+|+||+|||||++.|++...     +..|.|. ++.....     ...+.+.+++.+|+..+++ .++.+
T Consensus        67 ~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~-i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e  144 (305)
T PRK14264         67 DIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVE-LDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRE  144 (305)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEcccccccHHHHhhceEEEccCCcccc-ccHHH
Confidence            567999999999999999999999999875     4677754 4433221     1234567889898876554 47777


Q ss_pred             HHHHH
Q 024152          185 ALSLV  189 (271)
Q Consensus       185 ~~~~~  189 (271)
                      ++.+.
T Consensus       145 nl~~~  149 (305)
T PRK14264        145 NISYG  149 (305)
T ss_pred             HHHhH
Confidence            66543

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.95  E-value=1.7e-09  Score=92.70  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=34.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+
T Consensus        44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~   81 (224)
T cd03220          44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV   81 (224)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            56699999999999999999999999999888888554

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.95  E-value=3.1e-09  Score=94.46  Aligned_cols=73  Identities=19%  Similarity=0.189  Sum_probs=52.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+.+|++++|.|+||+|||||++.|++...  +   ..|.|. ++.+...    . ..+.+.+++.+|+..++. .++.+
T Consensus        61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~-~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e  138 (286)
T PRK14275         61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM-FDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFD  138 (286)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEE-ECCEEhhhcccchHHhhhcEEEECCCCCCCc-cCHHH
Confidence            577999999999999999999999999754  3   778755 4433211    1 234567889888876655 37777


Q ss_pred             HHHHH
Q 024152          185 ALSLV  189 (271)
Q Consensus       185 ~~~~~  189 (271)
                      ++.+.
T Consensus       139 nl~~~  143 (286)
T PRK14275        139 NIAYG  143 (286)
T ss_pred             HHHhH
Confidence            66543

>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]

Probab=98.94  E-value=6.2e-09  Score=92.46  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=99.9

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH----HHHHHcCCcCCc-ceec
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKTEN-LLLA  177 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~----~~~~~~g~~~~~-~~~~  177 (271)
                      -|+.|+++++  |..+||++++.||.|+|||||+--.+..++.++-..+|-|.|....+    ++.+..|+.... +..+
T Consensus       259 RFpvLNk~Lk--GhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y  336 (514)
T KOG2373|consen  259 RFPVLNKYLK--GHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSY  336 (514)
T ss_pred             hhhHHHHHhc--cCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhh
Confidence            5899999998  99999999999999999999999999988888877789888877554    344555654321 1111


Q ss_pred             CC--------------CCHHH----HHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHH
Q 024152          178 QP--------------DCGEQ----ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLS  239 (271)
Q Consensus       178 ~~--------------~~~~e----~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~  239 (271)
                      ..              ....+    .+..+.-..--+++.-||||.||.|.+...++.     .+-..+..+...+|++ 
T Consensus       337 ~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~-----Drf~~QD~iig~fR~f-  410 (514)
T KOG2373|consen  337 KHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMAL-----DRFHLQDRIIGYFRQF-  410 (514)
T ss_pred             hHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhcc-----chhhhHHHHHHHHHHH-
Confidence            10              11111    111111111124688899999999986443332     2233444455566666 


Q ss_pred             HHHhhcCcEEEEEccccccc
Q 024152          240 HSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~~~~  259 (271)
                        |.+.+|-|-++-|.++..
T Consensus       411 --AT~nn~HvTlVvHPRKed  428 (514)
T KOG2373|consen  411 --ATQNNIHVTLVVHPRKED  428 (514)
T ss_pred             --hhccceeEEEEecccccC
Confidence              999999999999998654

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.94  E-value=4.4e-09  Score=104.60  Aligned_cols=135  Identities=19%  Similarity=0.225  Sum_probs=84.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHH----
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALS----  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~----  187 (271)
                      -+++|+.++|+|++|+|||||++.+++...+.+|.|. +++...   ....+++.+++.+|+..+++ .+..|++.    
T Consensus       501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~  578 (710)
T TIGR03796       501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL-FDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWDP  578 (710)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCCC
Confidence            6789999999999999999999999999999999855 444322   22367888999999876653 23443332    


Q ss_pred             ---------HHHHHHhcCCccEEEEc----chhhhcCCCccCCccchhhHHHHHHHHHHHH-----------------HH
Q 024152          188 ---------LVDTLIRSGSVDVVVVD----SVAALVPKGELDGEMGDAHMAMQARLMSQAL-----------------RK  237 (271)
Q Consensus       188 ---------~~~~l~~~~~~~lvvID----~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~-----------------r~  237 (271)
                               .++..    ++.-. |+    .+..........-+.|++||...+|++.+.+                 +.
T Consensus       579 ~~~~~~i~~al~~~----~l~~~-i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~  653 (710)
T TIGR03796       579 TIPDADLVRACKDA----AIHDV-ITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI  653 (710)
T ss_pred             CCCHHHHHHHHHHh----CCHHH-HHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHH
Confidence                     22211    11000 00    0111111111122348999999999884311                 23


Q ss_pred             HHHHHhhcCcEEEEEcccc
Q 024152          238 LSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~  256 (271)
                      +.+..++.++|+|+++|-.
T Consensus       654 i~~~l~~~~~T~IiitHrl  672 (710)
T TIGR03796       654 IDDNLRRRGCTCIIVAHRL  672 (710)
T ss_pred             HHHHHHhcCCEEEEEecCH
Confidence            3333345799999999975

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.94  E-value=4.6e-09  Score=92.40  Aligned_cols=72  Identities=15%  Similarity=0.195  Sum_probs=52.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.+++...     +.+|.|.+ +.....     ...+.+.+++.+|...++. .++.+
T Consensus        42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e  119 (267)
T PRK14237         42 QFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY-RGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYE  119 (267)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE-CCEEcccccCChHHHhcceEEEecCCcccc-ccHHH
Confidence            567999999999999999999999999875     46787554 433221     1234566888888876655 47777


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       120 ni~~  123 (267)
T PRK14237        120 NITF  123 (267)
T ss_pred             HHHh
Confidence            6654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.94  E-value=3e-09  Score=101.86  Aligned_cols=72  Identities=19%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH--HHHHHcCCcCCcc---eecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP--SLAETIGVKTENL---LLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~--~~~~~~g~~~~~~---~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+.+.+-. ...  .....+++.+|..   .++...++.+.+
T Consensus       285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l  362 (510)
T PRK15439        285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNV  362 (510)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHH
Confidence            67799999999999999999999999998888888655432211 111  2234577888763   244445555443

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.94  E-value=1.6e-09  Score=116.34  Aligned_cols=145  Identities=14%  Similarity=0.189  Sum_probs=91.8

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceecCCCCHH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      .|+.+.-  ++++|++++|.|+||+|||||++.|++...++.|.|.+ .+.....  ....+.+|+.+|...+...+++.
T Consensus      1954 aL~~ISf--~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i-~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257      1954 AVDRLCV--GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATV-AGKSILTNISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred             EEEeeEE--EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE-CCEECcchHHHHhhhEEEEeccccCCCCCCHH
Confidence            4555544  78899999999999999999999999999999998654 4332211  23456789999988888888888


Q ss_pred             HHHHHHHHHHhcC--C--------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152          184 QALSLVDTLIRSG--S--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------  232 (271)
Q Consensus       184 e~~~~~~~l~~~~--~--------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------  232 (271)
                      |.+.+..++..-.  .        ++.+-++...... ...+++  |++|+...++++.                     
T Consensus      2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-~~~LSG--GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~ 2107 (2272)
T TIGR01257      2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-AGTYSG--GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARR 2107 (2272)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence            8776543321000  0        0111111111111 123333  7788877777762                     


Q ss_pred             HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 ~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ...+.+..+.+ .|++||+++|...
T Consensus      2108 ~l~~lL~~l~~-~g~TIILtTH~me 2131 (2272)
T TIGR01257      2108 MLWNTIVSIIR-EGRAVVLTSHSME 2131 (2272)
T ss_pred             HHHHHHHHHHh-CCCEEEEEeCCHH
Confidence            22223333333 4899999999764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.94  E-value=4.1e-09  Score=100.43  Aligned_cols=72  Identities=17%  Similarity=0.247  Sum_probs=48.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecC--CCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQ--PDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~--~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.+++...+ ..|.|.|.+.....  . ....+.+++.+|+.....  ..+.++++
T Consensus       282 ~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~  359 (490)
T PRK10938        282 QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVI  359 (490)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHH
Confidence            5779999999999999999999999997544 47886655432111  1 224456888887654322  23455543

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.94  E-value=4.5e-09  Score=91.43  Aligned_cols=72  Identities=17%  Similarity=0.211  Sum_probs=51.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...  +   +.|.|.+ +.....     ...+.+.+++.+|+..++.. ++.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~-~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~  102 (250)
T PRK14266         25 DIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL-DGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFD  102 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEE-CCEEcccccccHHHHhhheEEEecCCccCcc-hHHH
Confidence            567999999999999999999999999864  3   6787654 433221     12345678999988766553 6665


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       103 nl~~  106 (250)
T PRK14266        103 NVAY  106 (250)
T ss_pred             HHHh
Confidence            5543

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.93  E-value=7e-09  Score=90.79  Aligned_cols=74  Identities=15%  Similarity=0.128  Sum_probs=53.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE-----EEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV-----FIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~-----~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+.+|++++|.|+||+|||||+..|++...+..|.|.     +++.....   ...+...+++.+++..++...++.+++
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl  111 (257)
T PRK14246         32 KIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNI  111 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHH
Confidence            4569999999999999999999999999888775432     22222211   123455688888887776666777766


Q ss_pred             HH
Q 024152          187 SL  188 (271)
Q Consensus       187 ~~  188 (271)
                      ..
T Consensus       112 ~~  113 (257)
T PRK14246        112 AY  113 (257)
T ss_pred             HH
Confidence            54

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.93  E-value=3e-09  Score=101.61  Aligned_cols=73  Identities=12%  Similarity=0.156  Sum_probs=51.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCC-CC--HHHHHHcCCcCCcc---eecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA-LD--PSLAETIGVKTENL---LLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~-~~--~~~~~~~g~~~~~~---~~~~~~~~~e~~~  187 (271)
                      -+.+|++++|.|+||+|||||++.+++...+ .+|.|.|.+..-. ..  ..+.+.+++.+|..   .+++..++.+++.
T Consensus       282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~  361 (500)
T TIGR02633       282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT  361 (500)
T ss_pred             EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence            5779999999999999999999999999885 6888655432211 11  23345678888875   2445556665543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.93  E-value=1.3e-09  Score=105.44  Aligned_cols=63  Identities=21%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|++++|+||+|+|||||++.+++...+++|.|. +++....   ...+++.+++.+|+..+++
T Consensus       364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~-~~g~~i~~~~~~~~~~~i~~v~q~~~lf~  429 (555)
T TIGR01194       364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL-LDGAAVSADSRDDYRDLFSAIFADFHLFD  429 (555)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHHHhhCcEEccChhhhh
Confidence            5779999999999999999999999999999999855 4443222   2356677888888765553

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.93  E-value=1.3e-09  Score=89.95  Aligned_cols=85  Identities=22%  Similarity=0.211  Sum_probs=66.2

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC--HHH-HHHcCCcCCcceecC
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD--PSL-AETIGVKTENLLLAQ  178 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~--~~~-~~~~g~~~~~~~~~~  178 (271)
                      ||..|+.+.-  -+.+|++-+|+||||+|||||+-.|.+...++.|+|+|-+.... ..  ..+ +..+|--+|.+.++.
T Consensus        17 GF~Aln~ls~--~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe   94 (249)
T COG4674          17 GFKALNDLSF--SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE   94 (249)
T ss_pred             ceeeeeeeEE--EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence            7888887776  88999999999999999999999999999999998666552322 21  123 334677899998888


Q ss_pred             CCCHHHHHHHH
Q 024152          179 PDCGEQALSLV  189 (271)
Q Consensus       179 ~~~~~e~~~~~  189 (271)
                      ..++.|++..+
T Consensus        95 ~ltV~eNLelA  105 (249)
T COG4674          95 NLTVRENLELA  105 (249)
T ss_pred             hccHHHHHHHH
Confidence            88887766543

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.93  E-value=3.3e-09  Score=103.04  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=54.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|+.++|.|++|+|||||++.+++...+++|.|. +++...   ....+++.+++.+|+..+++ .+..|++
T Consensus       362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni  434 (574)
T PRK11160        362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL-LNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNL  434 (574)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHh
Confidence            6789999999999999999999999999999999855 544322   22366778999999876664 3455544

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.93  E-value=4.1e-09  Score=85.24  Aligned_cols=143  Identities=19%  Similarity=0.166  Sum_probs=94.7

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC----------HHHHHHcCCcCCcc
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----------PSLAETIGVKTENL  174 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~----------~~~~~~~g~~~~~~  174 (271)
                      +-++.+--  .+..||++++.||+|+|||||++++-+|..+++|.+.+--.....+          .-+.+.+||..|-+
T Consensus        25 pV~~~vsl--sV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL  102 (235)
T COG4778          25 PVLRNVSL--SVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL  102 (235)
T ss_pred             eeeeceeE--EecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence            44454443  6779999999999999999999999999999999854432222111          13456789999988


Q ss_pred             eecCCCCHHHH---------------HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------
Q 024152          175 LLAQPDCGEQA---------------LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM--------  231 (271)
Q Consensus       175 ~~~~~~~~~e~---------------~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l--------  231 (271)
                      ++.+....-++               ...++.+..+-++    -..|..+.| ..+++  |++||++.+|.+        
T Consensus       103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnl----perLW~LaP-aTFSG--GEqQRVNIaRgfivd~pILL  175 (235)
T COG4778         103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNL----PERLWSLAP-ATFSG--GEQQRVNIARGFIVDYPILL  175 (235)
T ss_pred             HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----CHHHhcCCC-cccCC--chheehhhhhhhhccCceEE
Confidence            77665544332               2333444433222    112333332 44454  788888888876        


Q ss_pred             ------------HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          232 ------------SQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       232 ------------~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                                  ....-.|.+-+|..|++++-+-|-.
T Consensus       176 LDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe  212 (235)
T COG4778         176 LDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE  212 (235)
T ss_pred             ecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH
Confidence                        2344477778899999999998865

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.93  E-value=2.3e-09  Score=94.74  Aligned_cols=69  Identities=20%  Similarity=0.232  Sum_probs=50.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|+|+||+|||||++.|++... ..|.| +++.....   ...+++.+++.+|+..+++ .++.+++
T Consensus        26 ~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl   97 (275)
T cd03289          26 SISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GTFRKNL   97 (275)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEhhhCCHHHHhhhEEEECCCcccch-hhHHHHh
Confidence            566999999999999999999999999987 67774 55554321   1245667889888876654 2444443

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.92  E-value=5.6e-09  Score=101.26  Aligned_cols=70  Identities=26%  Similarity=0.341  Sum_probs=55.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      .+++|+.++|+||+||||||+++.+++...++.|.+.+ ++..   .....+++.+++.+|+..+++ .|..+++
T Consensus       351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI  423 (567)
T COG1132         351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENI  423 (567)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE-CCEehhhcCHHHHHHhccEEcccceeec-ccHHHHH
Confidence            68899999999999999999999999999999998665 4422   223467888999999887765 4444433

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.92  E-value=6.1e-09  Score=94.40  Aligned_cols=138  Identities=20%  Similarity=0.200  Sum_probs=92.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCccee--cCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLL--AQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~--~~~~~~~e~~  186 (271)
                      -+++|+.++|+|++|||||||.+.+....... |. ++|.++...  .    +.+++++-++||+++-  .+.+++.+++
T Consensus       309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~-I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII  386 (534)
T COG4172         309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GE-IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII  386 (534)
T ss_pred             EecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ce-EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence            68899999999999999999999999998877 65 555554322  1    2456778888887643  3446666665


Q ss_pred             HHHHHHHh------------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HH
Q 024152          187 SLVDTLIR------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQ  233 (271)
Q Consensus       187 ~~~~~l~~------------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~  233 (271)
                      ..-.....            ...+.-+-+|.-....-..++++  |++||...+|++                     ++
T Consensus       387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG--GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQ  464 (534)
T COG4172         387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG--GQRQRIAIARALILKPELILLDEPTSALDRSVQAQ  464 (534)
T ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc--chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHH
Confidence            43211100            01122334454332222366666  788888888876                     35


Q ss_pred             HHHHHHHHHhhcCcEEEEEcccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ++..|+.+-++++.+-+|+||-.
T Consensus       465 vv~LLr~LQ~k~~LsYLFISHDL  487 (534)
T COG4172         465 VLDLLRDLQQKHGLSYLFISHDL  487 (534)
T ss_pred             HHHHHHHHHHHhCCeEEEEeccH
Confidence            66677777899999999999965

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.91  E-value=8.8e-09  Score=90.10  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=33.7

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV  151 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~  151 (271)
                      +.+|++++|.|+||+|||||++.+++...++.|.|.
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~   58 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD   58 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence            569999999999999999999999999999999864

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.91  E-value=1.2e-09  Score=95.51  Aligned_cols=62  Identities=23%  Similarity=0.274  Sum_probs=47.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceec
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLA  177 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~  177 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+ +.....   ...+.+.+++.+|+..++
T Consensus        43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i-~g~~i~~~~~~~~~~~i~~v~q~~~l~  107 (257)
T cd03288          43 YIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVI-DGIDISKLPLHTLRSRLSIILQDPILF  107 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEE-CCEEhhhCCHHHHhhhEEEECCCCccc
Confidence            56799999999999999999999999999889998554 332211   124456678888776544

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.91  E-value=5.4e-09  Score=90.32  Aligned_cols=55  Identities=20%  Similarity=0.296  Sum_probs=42.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGV  169 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~  169 (271)
                      -+|+|+++++.|+||+||||+++++.+...|.+|.|-+.+...-.. +.+.+.+++
T Consensus        46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~  101 (325)
T COG4586          46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGL  101 (325)
T ss_pred             ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHH
Confidence            7889999999999999999999999999999999866555432222 244444444

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.91  E-value=2.4e-09  Score=103.09  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=77.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcce--ecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL--LAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~--~~~~~~~~e~~~~~~~l  192 (271)
                      -+++|++++|.||||+|||||++.|++...+..|.|.+ +..        ..+++.+|...  +....++.+++......
T Consensus       341 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~  411 (530)
T PRK15064        341 LLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW-SEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQE  411 (530)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc--------eEEEEEcccccccCCCCCcHHHHHHHhccC
Confidence            67899999999999999999999999999888887554 321        24667776643  23335555544321100


Q ss_pred             H--h---cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-----------------HHHHHHHHHHhhcCcEE
Q 024152          193 I--R---SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-----------------QALRKLSHSLSLSQTIL  249 (271)
Q Consensus       193 ~--~---~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-----------------~~~r~L~~lake~~~~V  249 (271)
                      .  .   ..-+..+-+. ..... +-..++  .|++|+...++++.                 .....+..+.++.+.+|
T Consensus       412 ~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS--gGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tv  488 (530)
T PRK15064        412 GDDEQAVRGTLGRLLFSQDDIKK-SVKVLS--GGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTL  488 (530)
T ss_pred             CccHHHHHHHHHHcCCChhHhcC-cccccC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence            0  0   0000111110 01011 112333  37888888777773                 22334444556667899


Q ss_pred             EEEccccc
Q 024152          250 IFINQVFS  257 (271)
Q Consensus       250 i~~sql~~  257 (271)
                      |++||...
T Consensus       489 i~vsHd~~  496 (530)
T PRK15064        489 IFVSHDRE  496 (530)
T ss_pred             EEEeCCHH
Confidence            99999764

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.91  E-value=6.9e-09  Score=99.78  Aligned_cols=77  Identities=18%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHH
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      |+.+.-  -+++|+.++|+|++|+|||||++.+++...+.+|.+. ++....   ....+++.+++.+|+..+++ .+..
T Consensus       338 l~~i~l--~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~-~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~  413 (529)
T TIGR02857       338 LRPVSF--TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA-VNGVPLADADADSWRDQIAWVPQHPFLFA-GTIA  413 (529)
T ss_pred             ccceeE--EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEehhhCCHHHHHhheEEEcCCCcccC-cCHH
Confidence            444433  6789999999999999999999999999999999855 444322   22467788999999877664 3555


Q ss_pred             HHHH
Q 024152          184 QALS  187 (271)
Q Consensus       184 e~~~  187 (271)
                      |++.
T Consensus       414 ~Ni~  417 (529)
T TIGR02857       414 ENIR  417 (529)
T ss_pred             HHHh
Confidence            5443

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.90  E-value=5.4e-09  Score=101.18  Aligned_cols=65  Identities=14%  Similarity=0.132  Sum_probs=51.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||+|||||++.|++...+.+|.|.+...         ..+++.+|...+++..++.+++..
T Consensus        29 ~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------~~i~~v~Q~~~~~~~~tv~e~l~~   93 (556)
T PRK11819         29 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------IKVGYLPQEPQLDPEKTVRENVEE   93 (556)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------CEEEEEecCCCCCCCCcHHHHHHH
Confidence            57799999999999999999999999999898888655321         246778887766666677776543

>PLN03140 ABC transporter G family member; Provisional

Probab=98.90  E-value=9.7e-10  Score=116.02  Aligned_cols=77  Identities=19%  Similarity=0.199  Sum_probs=58.5

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD  190 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~  190 (271)
                      |-+++|++++|.||||+|||||++.+++...+.   .|.|.|.+.+ .......+.+++.+|...+...+++.|.+.++.
T Consensus       186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~-~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a  264 (1470)
T PLN03140        186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYR-LNEFVPRKTSAYISQNDVHVGVMTVKETLDFSA  264 (1470)
T ss_pred             EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEe-chhhcccceeEEecccccCCCcCcHHHHHHHHH
Confidence            378999999999999999999999999998776   7776654422 111112356788888877777889999887754


Q ss_pred             H
Q 024152          191 T  191 (271)
Q Consensus       191 ~  191 (271)
                      +
T Consensus       265 ~  265 (1470)
T PLN03140        265 R  265 (1470)
T ss_pred             H
Confidence            3

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.90  E-value=5.6e-09  Score=94.62  Aligned_cols=72  Identities=14%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|+|+||+|||||+..+++...     +..|.|. +++....    . ..+.+.+++.+|...++. .++.+
T Consensus       104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~-idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~e  181 (329)
T PRK14257        104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY-FLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFD  181 (329)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEccccccchHhhhccEEEEecCCccCC-CcHHH
Confidence            577999999999999999999999999875     3467754 4443321    1 244567889988876664 56766


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++.+
T Consensus       182 Ni~~  185 (329)
T PRK14257        182 NVAY  185 (329)
T ss_pred             HHHh
Confidence            6654

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.89  E-value=2.3e-09  Score=85.01  Aligned_cols=140  Identities=19%  Similarity=0.283  Sum_probs=87.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCC-CCCHHHHHHcCCcCCcceecCCCCHHHHHHHH-
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEH-ALDPSLAETIGVKTENLLLAQPDCGEQALSLV-  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~-~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~-  189 (271)
                      .+.+|+++-|.||+|||||||.--+++.++.+   .|. ++++... ..-+.-.+.+|+.+|+..+++..++-+++.++ 
T Consensus        24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~-~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl  102 (213)
T COG4136          24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE-LWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL  102 (213)
T ss_pred             EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeE-EEECCeeccccchhhhheeeeecccccccccccccceEEec
Confidence            46699999999999999999999999998864   344 5555432 22334567899999998888777776554321 


Q ss_pred             --------HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------------------HHHHHHHH-H
Q 024152          190 --------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM--------------------SQALRKLS-H  240 (271)
Q Consensus       190 --------~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l--------------------~~~~r~L~-~  240 (271)
                              |+-.....++.+-+|.+..-.| ..+++  |++-|+...|.+                    ....|.+. .
T Consensus       103 p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-~tlSG--GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs  179 (213)
T COG4136         103 PATLKGNARRNAANAALERSGLDGAFHQDP-ATLSG--GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS  179 (213)
T ss_pred             CcccccHHHHhhHHHHHHHhccchhhhcCh-hhcCc--chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH
Confidence                    1111111233333444332222 22333  566566655554                    23344432 2


Q ss_pred             HHhhcCcEEEEEcccccc
Q 024152          241 SLSLSQTILIFINQVFSI  258 (271)
Q Consensus       241 lake~~~~Vi~~sql~~~  258 (271)
                      .+++.++|++.++|-..+
T Consensus       180 ~~r~agiPtv~VTHD~~D  197 (213)
T COG4136         180 EVRAAGIPTVQVTHDLQD  197 (213)
T ss_pred             HHHhcCCCeEEEeccccc
Confidence            367889999999997644

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.89  E-value=6e-10  Score=117.51  Aligned_cols=146  Identities=14%  Similarity=0.089  Sum_probs=92.8

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH----hhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCC
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA----QRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDC  181 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~----~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~  181 (271)
                      |+.+.+  -+++|++++|.||||+|||||++.+++..    .+.+|.|.|.+.+... ....++.+++.+|+....+..+
T Consensus        77 L~~vs~--~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT  154 (1394)
T TIGR00956        77 LKPMDG--LIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT  154 (1394)
T ss_pred             eeCCEE--EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence            444443  78899999999999999999999999976    3467776554322111 1122345788888877777789


Q ss_pred             HHHHHHHHHHHHhcC----Cc-----cEEEEcchhhhcC-------------CCccCCccchhhHHHHHHHHH-------
Q 024152          182 GEQALSLVDTLIRSG----SV-----DVVVVDSVAALVP-------------KGELDGEMGDAHMAMQARLMS-------  232 (271)
Q Consensus       182 ~~e~~~~~~~l~~~~----~~-----~lvvID~l~~~~~-------------~~~l~~~~g~~~~~~~~~~l~-------  232 (271)
                      +.|.+.+..++....    +.     ...++|.+.....             ...+++  |++||+..++++.       
T Consensus       155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG--GerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSG--GERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCc--ccchHHHHHHHHHhCCCEEE
Confidence            999887754432100    00     0001121111110             122444  8999999998873       


Q ss_pred             --------------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 --------------QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 --------------~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                                    .+.+.|+.++++.|.+||+++|..
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~  270 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQC  270 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence                          355567777777899999998863

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.89  E-value=6.3e-09  Score=100.96  Aligned_cols=71  Identities=23%  Similarity=0.261  Sum_probs=54.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|+.++|.|+||+|||||++.+++...+.+|.+.+ +...   .....+++.+++.+|+..+++ .+..+++.
T Consensus       337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~  410 (569)
T PRK10789        337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF-HDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIA  410 (569)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE-CCEEHhhCCHHHHHhheEEEccCCeecc-ccHHHHHh
Confidence            67899999999999999999999999999999998654 4322   122356778899999877664 35555443

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.89  E-value=8.6e-09  Score=100.38  Aligned_cols=63  Identities=29%  Similarity=0.331  Sum_probs=50.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|.|++|+|||||++.+++...+..|.+. ++...   .....+++.+++.+|+..+++
T Consensus       357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~  422 (588)
T PRK13657        357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL-IDGTDIRTVTRASLRRNIAVVFQDAGLFN  422 (588)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE-ECCEEhhhCCHHHHHhheEEEecCccccc
Confidence            5779999999999999999999999999999999854 44432   223467788999999876653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.89  E-value=3e-09  Score=104.49  Aligned_cols=131  Identities=18%  Similarity=0.238  Sum_probs=75.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc-eecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~-~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+.+|++++|+|+||+|||||++.|++...+..|.|.+ +..        -.++|.+|.. .+.+..++.+++.......
T Consensus       341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~--------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~  411 (635)
T PRK11147        341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK--------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV  411 (635)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC--------cEEEEEeCcccccCCCCCHHHHHHhhcccc
Confidence            57899999999999999999999999998888887644 321        0355555543 2334445555543321000


Q ss_pred             --hc------CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-----------------HHHHHHHHHHhhcCc
Q 024152          194 --RS------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-----------------QALRKLSHSLSLSQT  247 (271)
Q Consensus       194 --~~------~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-----------------~~~r~L~~lake~~~  247 (271)
                        ..      .-+..+-+. .... .+-..++  .|++++...++++.                 .....|..+.++++.
T Consensus       412 ~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS--gGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~  488 (635)
T PRK11147        412 MVNGRPRHVLGYLQDFLFHPKRAM-TPVKALS--GGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQG  488 (635)
T ss_pred             cccchHHHHHHHHHhcCCCHHHHh-ChhhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCC
Confidence              00      000000010 0000 0012233  37777777777663                 223355556677788


Q ss_pred             EEEEEccccc
Q 024152          248 ILIFINQVFS  257 (271)
Q Consensus       248 ~Vi~~sql~~  257 (271)
                      +||++||-..
T Consensus       489 tvi~vSHd~~  498 (635)
T PRK11147        489 TVLLVSHDRQ  498 (635)
T ss_pred             eEEEEECCHH
Confidence            9999999763

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.89  E-value=3e-09  Score=114.32  Aligned_cols=137  Identities=11%  Similarity=0.084  Sum_probs=89.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      .+.+|++++|.|+||+|||||++.+++...+++|.|.+ .+.....  ...++.+|+.+|...+++..++.|.+.+..++
T Consensus       952 ~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i-~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257       952 TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLV-GGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred             EEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEE-CCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence            67899999999999999999999999999999998654 4332221  23456689999988888888998887764332


Q ss_pred             HhcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHH
Q 024152          193 IRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHS  241 (271)
Q Consensus       193 ~~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~l  241 (271)
                      ....          -++.+-++...... ...++  .|++|+...++++.                     .....|.++
T Consensus      1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LS--GGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257      1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEE-AQDLS--GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            1100          01111111111111 12333  38888888888873                     222233333


Q ss_pred             HhhcCcEEEEEccccc
Q 024152          242 LSLSQTILIFINQVFS  257 (271)
Q Consensus       242 ake~~~~Vi~~sql~~  257 (271)
                       + .+.+||+++|...
T Consensus      1108 -~-~g~TIIltTHdmd 1121 (2272)
T TIGR01257      1108 -R-SGRTIIMSTHHMD 1121 (2272)
T ss_pred             -h-CCCEEEEEECCHH
Confidence             3 3889999999764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.89  E-value=4.6e-09  Score=101.49  Aligned_cols=135  Identities=13%  Similarity=0.075  Sum_probs=80.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC--CCCHHHHHHcCCcCCcceecCCC--------CHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALDPSLAETIGVKTENLLLAQPD--------CGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~--~~~~~~~~~~g~~~~~~~~~~~~--------~~~e  184 (271)
                      -+++|+.++|.|+||+|||||++.+++...++.|.|.+.+.+-  .....+++.+++.+|+..+++..        +.++
T Consensus       345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~  424 (547)
T PRK10522        345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPAL  424 (547)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHH
Confidence            5779999999999999999999999999999999865533221  11235677788888876554321        1112


Q ss_pred             HHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHHh
Q 024152          185 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSLS  243 (271)
Q Consensus       185 ~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~lak  243 (271)
                      +.+.+..    .+.+.. ++..........++  .|++||...+|++..                     +.+.|....+
T Consensus       425 ~~~~~~~----~~l~~~-~~~~~~~~~G~~LS--gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~  497 (547)
T PRK10522        425 VEKWLER----LKMAHK-LELEDGRISNLKLS--KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ  497 (547)
T ss_pred             HHHHHHH----cCCchh-hhccccCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence            2222222    122110 00000000012333  388888888888731                     2233433334


Q ss_pred             hcCcEEEEEcccc
Q 024152          244 LSQTILIFINQVF  256 (271)
Q Consensus       244 e~~~~Vi~~sql~  256 (271)
                      +.+.|+|+++|-.
T Consensus       498 ~~~~tvi~itH~~  510 (547)
T PRK10522        498 EMGKTIFAISHDD  510 (547)
T ss_pred             hCCCEEEEEEech
Confidence            4689999999964

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.89  E-value=8.1e-09  Score=109.40  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=61.5

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CC-HHHHHHcCCcCCcceecCCCCH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD-PSLAETIGVKTENLLLAQPDCG  182 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~-~~~~~~~g~~~~~~~~~~~~~~  182 (271)
                      -|+.+.-  -+++|++++|+|+||||||||++.+++...+..|.|.+.+....  .. ..+++.+++.+|+..++. .++
T Consensus       400 vL~~isl--~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI  476 (1466)
T PTZ00265        400 IYKDLNF--TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSI  476 (1466)
T ss_pred             eeccceE--EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccH
Confidence            3454443  68899999999999999999999999999999998655343221  12 346778999999987775 477


Q ss_pred             HHHHHH
Q 024152          183 EQALSL  188 (271)
Q Consensus       183 ~e~~~~  188 (271)
                      .+++.+
T Consensus       477 ~eNI~~  482 (1466)
T PTZ00265        477 KNNIKY  482 (1466)
T ss_pred             HHHHHh
Confidence            777765

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.88  E-value=9.7e-09  Score=100.11  Aligned_cols=70  Identities=17%  Similarity=0.202  Sum_probs=54.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|+.++|.|++|+|||||++.+++...|++|.|. +++.+   .....+.+.+++.+|+..+++. |..+++
T Consensus       363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~-idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI  435 (592)
T PRK10790        363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR-LDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANV  435 (592)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE-ECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHH
Confidence            6789999999999999999999999999999999855 44432   2234678889999998776653 444433

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.88  E-value=9.9e-09  Score=90.22  Aligned_cols=38  Identities=24%  Similarity=0.206  Sum_probs=34.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+
T Consensus        46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546         46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            56699999999999999999999999999988887654

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=1.3e-08  Score=95.33  Aligned_cols=138  Identities=23%  Similarity=0.271  Sum_probs=88.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCC------------
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQP------------  179 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~------------  179 (271)
                      -+|+|+-++|+|+|||||||+++.+.+... .+|+ +++++.+..   ...+++.+|++||+-.+++.            
T Consensus       374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~-I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s  451 (591)
T KOG0057|consen  374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGS-ILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS  451 (591)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCc-EEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC
Confidence            789999999999999999999999999998 7787 556654332   23677889999997554432            


Q ss_pred             CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHH
Q 024152          180 DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKL  238 (271)
Q Consensus       180 ~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L  238 (271)
                      .+.+++.+.|++.-- ++.-.=.=|.-+...+.....-+.|++|+...+|++                     .++++.+
T Consensus       452 as~eeV~e~~k~a~~-hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i  530 (591)
T KOG0057|consen  452 ASDEEVVEACKRAGL-HDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI  530 (591)
T ss_pred             cCHHHHHHHHHHcCc-HHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHH
Confidence            345666666665310 000000001111112222222334888888888887                     2344455


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      ..  +.-+.|+|++.|-.+
T Consensus       531 ~~--~~~~rTvI~IvH~l~  547 (591)
T KOG0057|consen  531 MD--VMSGRTVIMIVHRLD  547 (591)
T ss_pred             HH--hcCCCeEEEEEecch
Confidence            33  357999999999763

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.87  E-value=7.2e-09  Score=100.24  Aligned_cols=65  Identities=14%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+..         ...+++.+|...+++..++.+++..
T Consensus        27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------~~~i~~v~Q~~~~~~~~tv~e~i~~   91 (552)
T TIGR03719        27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP---------GIKVGYLPQEPQLDPTKTVRENVEE   91 (552)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------CCEEEEEeccCCCCCCCcHHHHHHH
Confidence            5779999999999999999999999999988888865422         1247788887766666677776653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.87  E-value=3.6e-09  Score=102.29  Aligned_cols=131  Identities=19%  Similarity=0.196  Sum_probs=79.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcce-ecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL-LAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.|+||+|||||++.+++...+..|.|.+ +..        ..+++.+|+.. ++...++.+++.......
T Consensus       344 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~  414 (552)
T TIGR03719       344 KLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET--------VKLAYVDQSRDALDPNKTVWEEISGGLDII  414 (552)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc--------eEEEEEeCCccccCCCCcHHHHHHhhcccc
Confidence            67899999999999999999999999998888888654 321        14677777642 444456666654422100


Q ss_pred             h--------cCCccEEEEcc-hhhhcCCCccCCccchhhHHHHHHHHHH-----------------HHHHHHHHHhhcCc
Q 024152          194 R--------SGSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQ-----------------ALRKLSHSLSLSQT  247 (271)
Q Consensus       194 ~--------~~~~~lvvID~-l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------------~~r~L~~lake~~~  247 (271)
                      .        ..-+..+-++. .... +-..++  .|++++...++++..                 ....+..+.++++.
T Consensus       415 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS--gGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  491 (552)
T TIGR03719       415 QLGKREVPSRAYVGRFNFKGSDQQK-KVGQLS--GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG  491 (552)
T ss_pred             ccCcchHHHHHHHHhCCCChhHhcC-chhhCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCC
Confidence            0        00001111110 0000 012333  388888888887732                 23344455566656


Q ss_pred             EEEEEccccc
Q 024152          248 ILIFINQVFS  257 (271)
Q Consensus       248 ~Vi~~sql~~  257 (271)
                      +||++||...
T Consensus       492 ~viivsHd~~  501 (552)
T TIGR03719       492 CAVVISHDRW  501 (552)
T ss_pred             eEEEEeCCHH
Confidence            8999999764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.86  E-value=9.6e-09  Score=101.95  Aligned_cols=63  Identities=25%  Similarity=0.274  Sum_probs=50.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|+|++|+|||||++.+++...+.+|.+. +++...   ....+++.+++.+|+..+++
T Consensus       487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~-idg~~l~~~~~~~lr~~i~~v~Q~~~lf~  552 (694)
T TIGR03375       487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL-LDGVDIRQIDPADLRRNIGYVPQDPRLFY  552 (694)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEhhhCCHHHHHhccEEECCChhhhh
Confidence            5789999999999999999999999999999999855 443322   22367788999998866553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.86  E-value=2.2e-09  Score=95.25  Aligned_cols=38  Identities=29%  Similarity=0.480  Sum_probs=34.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      -+++|++++|+|+||+|||||++.|++...+..|.|.+
T Consensus        59 ~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i   96 (282)
T cd03291          59 KIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH   96 (282)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            57799999999999999999999999999888887544

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.86  E-value=4.5e-09  Score=101.70  Aligned_cols=131  Identities=21%  Similarity=0.220  Sum_probs=79.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc-eecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~-~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+.+|++++|.|+||+|||||++.|++...+..|.|.+ +..        ..+++.+|+. .++...++.+++.......
T Consensus       346 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~  416 (556)
T PRK11819        346 SLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET--------VKLAYVDQSRDALDPNKTVWEEISGGLDII  416 (556)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc--------eEEEEEeCchhhcCCCCCHHHHHHhhcccc
Confidence            57799999999999999999999999999888888654 321        1467777765 4455567766655422110


Q ss_pred             hcC--------CccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHHH-----------------HHHHHHHHHhhcCc
Q 024152          194 RSG--------SVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQ-----------------ALRKLSHSLSLSQT  247 (271)
Q Consensus       194 ~~~--------~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------------~~r~L~~lake~~~  247 (271)
                      ...        -+..+-+. ..... .-..++  .|++++...++++..                 ....+..+.+++..
T Consensus       417 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  493 (556)
T PRK11819        417 KVGNREIPSRAYVGRFNFKGGDQQK-KVGVLS--GGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPG  493 (556)
T ss_pred             cccccHHHHHHHHHhCCCChhHhcC-chhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCC
Confidence            000        00011110 00000 012233  378888888887732                 22344444556556


Q ss_pred             EEEEEccccc
Q 024152          248 ILIFINQVFS  257 (271)
Q Consensus       248 ~Vi~~sql~~  257 (271)
                      +||+++|...
T Consensus       494 tvi~vtHd~~  503 (556)
T PRK11819        494 CAVVISHDRW  503 (556)
T ss_pred             eEEEEECCHH
Confidence            8999999763

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.86  E-value=1.1e-08  Score=101.74  Aligned_cols=70  Identities=24%  Similarity=0.322  Sum_probs=54.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|+.++|+|++|+|||||++.+++...+++|.|. +++...   ....+.+.+++.+|+..+++ .+..|++
T Consensus       503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI  575 (711)
T TIGR00958       503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL-LDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENI  575 (711)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE-ECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHH
Confidence            6889999999999999999999999999999999854 554322   23467778999999876654 3444433

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.86  E-value=1.6e-08  Score=97.62  Aligned_cols=76  Identities=22%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHH
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      |+.+.-  -+++|+.++|+|+||+|||||++.+++...+.+|.|.+ ++...   ....+.+.+++.+|+..+++. +..
T Consensus       334 l~~~~~--~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~-~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~  409 (544)
T TIGR01842       334 LRGISF--RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL-DGADLKQWDRETFGKHIGYLPQDVELFPG-TVA  409 (544)
T ss_pred             cccceE--EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEehhhCCHHHHhhheEEecCCcccccc-cHH
Confidence            444433  67899999999999999999999999999999998654 43221   123566788999988766543 444


Q ss_pred             HHH
Q 024152          184 QAL  186 (271)
Q Consensus       184 e~~  186 (271)
                      +++
T Consensus       410 ~Ni  412 (544)
T TIGR01842       410 ENI  412 (544)
T ss_pred             HHH
Confidence            443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.85  E-value=1.8e-08  Score=97.88  Aligned_cols=64  Identities=19%  Similarity=0.283  Sum_probs=50.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|.|++|+|||||++.+++...+.+|.+.+.+.+  ......+.+.+++.+|+..+++
T Consensus       362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~  427 (576)
T TIGR02204       362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA  427 (576)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcccc
Confidence            578999999999999999999999999999999985543322  1122356778999998876553

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.85  E-value=1.7e-08  Score=100.48  Aligned_cols=63  Identities=19%  Similarity=0.182  Sum_probs=50.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|.|++|+|||||++.+++...+++|.+. +++..   .....+++.+++.+|+..+++
T Consensus       496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lf~  561 (708)
T TIGR01193       496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL-LNGFSLKDIDRHTLRQFINYLPQEPYIFS  561 (708)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE-ECCEEHHHcCHHHHHHheEEEecCceehh
Confidence            6889999999999999999999999999999999855 44432   222367788999999866553

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.85  E-value=1.1e-08  Score=89.01  Aligned_cols=72  Identities=13%  Similarity=0.153  Sum_probs=50.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      -+++|++++|.|+||+|||||++.|++...  +   ..|.|.+ +.+...    . ..+.+.+++.+|+...+. .++.+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~  104 (252)
T PRK14255         27 DFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSL-RGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYE  104 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEE-cCEEcccccccHHHhcCeEEEEECCCccCC-CcHHH
Confidence            567999999999999999999999999754  3   3677554 433221    1 133456888888876665 57766


Q ss_pred             HHHH
Q 024152          185 ALSL  188 (271)
Q Consensus       185 ~~~~  188 (271)
                      ++..
T Consensus       105 nl~~  108 (252)
T PRK14255        105 NVIY  108 (252)
T ss_pred             HHHH
Confidence            6654

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.84  E-value=3.6e-09  Score=104.24  Aligned_cols=129  Identities=16%  Similarity=0.119  Sum_probs=77.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH-----
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-----  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~-----  189 (271)
                      -+++|++++|.||||+|||||++.+++...+.+|.+.+ +.        .+.+++.+|+..+++. +..+++...     
T Consensus       474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~-~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~  543 (659)
T TIGR00954       474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTK-PA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSED  543 (659)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEee-cC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhh
Confidence            57799999999999999999999999998888887543 21        2345666666544433 444443321     


Q ss_pred             -----------HHHHhcCCccEE-----EEcchhhhcCCCccCCccchhhHHHHHHHHHH-----------------HHH
Q 024152          190 -----------DTLIRSGSVDVV-----VVDSVAALVPKGELDGEMGDAHMAMQARLMSQ-----------------ALR  236 (271)
Q Consensus       190 -----------~~l~~~~~~~lv-----vID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------------~~r  236 (271)
                                 .......++.-.     -.|.... . ...+++  |++||...++++..                 .-.
T Consensus       544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~-~-~~~LSg--GqkQRl~iARal~~~p~illLDEpts~LD~~~~~  619 (659)
T TIGR00954       544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQD-W-MDVLSG--GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG  619 (659)
T ss_pred             hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccc-c-ccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence                       001111111000     0011000 0 123333  88888888888732                 333


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .+.+.+++.++|+|+++|-..
T Consensus       620 ~l~~~l~~~~~tvI~isH~~~  640 (659)
T TIGR00954       620 YMYRLCREFGITLFSVSHRKS  640 (659)
T ss_pred             HHHHHHHHcCCEEEEEeCchH
Confidence            455556677999999999764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.83  E-value=1.3e-08  Score=97.11  Aligned_cols=58  Identities=16%  Similarity=0.292  Sum_probs=43.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH--HHHHHcCCcCCc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP--SLAETIGVKTEN  173 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~--~~~~~~g~~~~~  173 (271)
                      -+++|++++|+|+||+|||||++.+++...+.+|.|.+ +.+...  ..  .+.+.+++.+|.
T Consensus       270 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~i~~~~q~  331 (491)
T PRK10982        270 DLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL-HGKKINNHNANEAINHGFALVTEE  331 (491)
T ss_pred             EEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEE-CCEECCCCCHHHHHHCCCEEcCCc
Confidence            57799999999999999999999999999888898654 432221  11  223346777665

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.83  E-value=3.2e-08  Score=84.46  Aligned_cols=58  Identities=24%  Similarity=0.323  Sum_probs=46.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTE  172 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~  172 (271)
                      -+++|+-..|.|+||+|||||+..+++...+..+.+.+++....   ...++++.+|++..
T Consensus        53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~  113 (257)
T COG1119          53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSS  113 (257)
T ss_pred             eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCH
Confidence            46699999999999999999999999999988888777764322   22577888887753

>PLN03140 ABC transporter G family member; Provisional

Probab=98.83  E-value=3.9e-09  Score=111.57  Aligned_cols=146  Identities=15%  Similarity=0.129  Sum_probs=91.6

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      -|+.+.+  -+++|++++|.||||+|||||++.|++....  ..|.+. +++.........+.+++.+|+..+.+..++.
T Consensus       895 iL~~vs~--~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~-inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~  971 (1470)
T PLN03140        895 LLREVTG--AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR-ISGFPKKQETFARISGYCEQNDIHSPQVTVR  971 (1470)
T ss_pred             EeeCcEE--EEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEE-ECCccCChHHhhhheEEEccccccCCCCcHH
Confidence            4555554  7889999999999999999999999997542  356644 4443332234456689999987777778898


Q ss_pred             HHHHHHHHHHhcCC-------------ccEEEEcchhhhcC----CCccCCccchhhHHHHHHHHH--------------
Q 024152          184 QALSLVDTLIRSGS-------------VDVVVVDSVAALVP----KGELDGEMGDAHMAMQARLMS--------------  232 (271)
Q Consensus       184 e~~~~~~~l~~~~~-------------~~lvvID~l~~~~~----~~~l~~~~g~~~~~~~~~~l~--------------  232 (271)
                      |.+.+...+.....             ++.+-++.......    ...++  .|+++|...++++.              
T Consensus       972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS--gGerkRvsIa~aL~~~P~lL~LDEPTsg 1049 (1470)
T PLN03140        972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS--TEQRKRLTIAVELVANPSIIFMDEPTSG 1049 (1470)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC--HHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence            88776433210000             01111111111110    01233  38889988888873              


Q ss_pred             -------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152          233 -------QALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       233 -------~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                             .+.+.|+++++ .|.+||+++|.-.
T Consensus      1050 LD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140       1050 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPS 1080 (1470)
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence                   34445555554 4899999999754

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.83  E-value=2.1e-08  Score=97.66  Aligned_cols=70  Identities=23%  Similarity=0.231  Sum_probs=53.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|+.++|.|+||+|||||++.+++...+.+|.+.+ ++...   ....+++.+++.+|+..+++ .+..+++
T Consensus       357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni  429 (585)
T TIGR01192       357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI-DGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENI  429 (585)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE-CCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHH
Confidence            57799999999999999999999999999999998554 43321   22356778899998876654 3455444

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.82  E-value=3.2e-08  Score=76.94  Aligned_cols=115  Identities=19%  Similarity=0.293  Sum_probs=75.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCCC-----HHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~~-----~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      +.+.++.|.|+||+|||+++..++......     ..+++++.......     ..+...++.....     ..+..++.
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~   76 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR   76 (131)
T ss_dssp             -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence            457789999999999999999999988753     45677776433222     2445555554433     45677777


Q ss_pred             HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          187 SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       187 ~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ..+.+...+....+++||.++.+..                 .   ..+..|+.++.+.+++||++.+..
T Consensus        77 ~~~~~~l~~~~~~~lviDe~~~l~~-----------------~---~~l~~l~~l~~~~~~~vvl~G~~~  126 (131)
T PF13401_consen   77 SLLIDALDRRRVVLLVIDEADHLFS-----------------D---EFLEFLRSLLNESNIKVVLVGTPE  126 (131)
T ss_dssp             HHHHHHHHHCTEEEEEEETTHHHHT-----------------H---HHHHHHHHHTCSCBEEEEEEESST
T ss_pred             HHHHHHHHhcCCeEEEEeChHhcCC-----------------H---HHHHHHHHHHhCCCCeEEEEEChh
Confidence            7777777666678999999988620                 1   334444555779999999998753

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.82  E-value=2.2e-08  Score=97.16  Aligned_cols=64  Identities=19%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|.|++|+|||||++.+++...+.+|.|.+.+.+  ......+.+.+++.+|+..+++
T Consensus       354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~  419 (571)
T TIGR02203       354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN  419 (571)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc
Confidence            577999999999999999999999999999999985543322  1222366778999998876653

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.82  E-value=9.2e-08  Score=76.88  Aligned_cols=139  Identities=13%  Similarity=0.146  Sum_probs=85.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--------HHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--------PSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--------~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      .-+.|+.+.+.||+|+|||+|++.+...--+.+|...+-+.+..+.        ..+++..|+.+|.+.+++.+++-+++
T Consensus        24 ~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enl  103 (242)
T COG4161          24 DCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL  103 (242)
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHH
Confidence            4679999999999999999999998887778888644322222111        25678899999999999998876554


Q ss_pred             HHH-HHHH-------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-----------------HHHH--
Q 024152          187 SLV-DTLI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS-----------------QALR--  236 (271)
Q Consensus       187 ~~~-~~l~-------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~-----------------~~~r--  236 (271)
                      -.+ .+..       .   ..-++.+-+......+   ++..+.|++||+..+|++.                 ++..  
T Consensus       104 ieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~---plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqv  180 (242)
T COG4161         104 IEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRY---PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI  180 (242)
T ss_pred             HhhhHHHhCCCHHHHHHHHHHHHHHhccccccccC---ceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHH
Confidence            221 1100       0   0001111122222222   2333348889999988872                 1111  


Q ss_pred             -HHHHHHhhcCcEEEEEcccc
Q 024152          237 -KLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       237 -~L~~lake~~~~Vi~~sql~  256 (271)
                       .+.+...+.|+|-++++|--
T Consensus       181 v~iikel~~tgitqvivthev  201 (242)
T COG4161         181 VSIIKELAETGITQVIVTHEV  201 (242)
T ss_pred             HHHHHHHHhcCceEEEEEeeh
Confidence             22233456899988888753

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.82  E-value=2.3e-08  Score=99.29  Aligned_cols=63  Identities=25%  Similarity=0.326  Sum_probs=50.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|+|++|+|||||++.+++...+.+|.|. +++...   ....+++.+++.+|+..+++
T Consensus       479 ~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~-idg~~i~~~~~~~~r~~i~~v~q~~~lf~  544 (694)
T TIGR01846       479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL-VDGVDLAIADPAWLRRQMGVVLQENVLFS  544 (694)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEehhhCCHHHHHHhCeEEccCCeehh
Confidence            6789999999999999999999999999999999855 544322   22366778999998866553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.1e-08  Score=98.66  Aligned_cols=72  Identities=24%  Similarity=0.264  Sum_probs=56.8

Q ss_pred             cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152          104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~  178 (271)
                      .+-|+.+.-  -++||++++|+||+|+||||++..+.....|.+|.|. +|+...   ....+.+.+|++.|.+.++.
T Consensus       481 ~~Vlk~lsf--ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il-lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs  555 (716)
T KOG0058|consen  481 VPVLKNLSF--TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL-LDGVPISDINHKYLRRKIGLVGQEPVLFS  555 (716)
T ss_pred             chhhcCcee--eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE-ECCeehhhcCHHHHHHHeeeeeccceeec
Confidence            345666655  7999999999999999999999999999999999855 554432   23467788999988776653

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.81  E-value=9e-10  Score=86.69  Aligned_cols=70  Identities=24%  Similarity=0.321  Sum_probs=55.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCCCCHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA  185 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~~e~  185 (271)
                      -+++|++++|+|+||+|||||++.+++...+..|.| +++......   ......+++.+++..+....++.+.
T Consensus         7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI-LINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE-EETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             EEcCCCEEEEEccCCCccccceeeeccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            467999999999999999999999999999888874 455443333   3567778888888777777776654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.80  E-value=1.2e-08  Score=86.87  Aligned_cols=40  Identities=20%  Similarity=0.151  Sum_probs=35.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      -+++|++++|.||||+|||||++.+++...+.+|.|..+.
T Consensus         9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~   48 (213)
T PRK15177          9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLR   48 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEec
Confidence            5779999999999999999999999999999989865343

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.80  E-value=4.7e-09  Score=110.89  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=90.3

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG  182 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~---~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~  182 (271)
                      -|+.+..  -+++|++++|.||||+|||||++.+++...   +.+|.+. +++... ...+++.+++.+|+.......++
T Consensus       778 iL~~vs~--~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~-i~G~~~-~~~~~~~i~yv~Q~~~~~~~~Tv  853 (1394)
T TIGR00956       778 ILNNVDG--WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRL-VNGRPL-DSSFQRSIGYVQQQDLHLPTSTV  853 (1394)
T ss_pred             eeeCCEE--EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE-ECCEEC-ChhhhcceeeecccccCCCCCCH
Confidence            3555544  788999999999999999999999999876   4567754 544332 23456678999988666667788


Q ss_pred             HHHHHHHHHHHhcCC-------------ccEEEEcchhhhcCC---CccCCccchhhHHHHHHHHHHHH-----------
Q 024152          183 EQALSLVDTLIRSGS-------------VDVVVVDSVAALVPK---GELDGEMGDAHMAMQARLMSQAL-----------  235 (271)
Q Consensus       183 ~e~~~~~~~l~~~~~-------------~~lvvID~l~~~~~~---~~l~~~~g~~~~~~~~~~l~~~~-----------  235 (271)
                      .|.+.+...+.....             ++.+-++........   ..++  .|++||...++++...+           
T Consensus       854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LS--gGqrqRl~Ia~aL~~~P~~iLlLDEPTs  931 (1394)
T TIGR00956       854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN--VEQRKRLTIGVELVAKPKLLLFLDEPTS  931 (1394)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCC--HHHhhHHHHHHHHHcCCCeEEEEcCCCC
Confidence            888776443211000             011111111100000   0233  37888888888774333           


Q ss_pred             -----------HHHHHHHhhcCcEEEEEccccc
Q 024152          236 -----------RKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       236 -----------r~L~~lake~~~~Vi~~sql~~  257 (271)
                                 +.|+++++ .|.+||+++|.-.
T Consensus       932 gLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~  963 (1394)
T TIGR00956       932 GLDSQTAWSICKLMRKLAD-HGQAILCTIHQPS  963 (1394)
T ss_pred             CCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCC
Confidence                       34555543 5899999999643

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.78  E-value=1.3e-07  Score=72.99  Aligned_cols=125  Identities=29%  Similarity=0.323  Sum_probs=70.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS  197 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~  197 (271)
                      ++..+.|.||||+||||++..++..+......+++++.+...........  ............................
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK   78 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence            36789999999999999999999988876656788887655443222111  0000000111222222223333333344


Q ss_pred             ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccc
Q 024152          198 VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV  255 (271)
Q Consensus       198 ~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql  255 (271)
                      +.++++|++..+...         ........  ..............+..+|++++.
T Consensus        79 ~~viiiDei~~~~~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       79 PDVLILDEITSLLDA---------EQEALLLL--LEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCEEEEECCcccCCH---------HHHHHHHh--hhhhHHHHHHHhcCCCEEEEEeCC
Confidence            799999999877631         10000000  000222333455678889988884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK13409 putative ATPase RIL; Provisional

Probab=98.77  E-value=1.3e-08  Score=98.93  Aligned_cols=36  Identities=31%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV  151 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~  151 (271)
                      +++|++++|+|+||+|||||++.+++...++.|.+.
T Consensus        96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~  131 (590)
T PRK13409         96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE  131 (590)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence            459999999999999999999999999999988864

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.76  E-value=1.2e-08  Score=100.44  Aligned_cols=138  Identities=16%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHH----HHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL----AETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~----~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.|+||+|||||++.+++...++.|.+.| +.+....   ..+    .+.+++.+|...+++..+..+++.
T Consensus        30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~  108 (648)
T PRK10535         30 DIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRV-AGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVE  108 (648)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-CCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHH
Confidence            46699999999999999999999999999999998554 4433221   122    346889999887777677666554


Q ss_pred             HHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHH
Q 024152          188 LVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALR  236 (271)
Q Consensus       188 ~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r  236 (271)
                      .......          ..-++.+-++...... ...+  +.|+.|+...++++..                     ...
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-~~~L--S~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~  185 (648)
T PRK10535        109 VPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-PSQL--SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA  185 (648)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-cccC--CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence            3211100          0001111111111111 1222  3377888888887732                     222


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .+++ +++.+.++++++|...
T Consensus       186 ll~~-l~~~g~tilivsH~~~  205 (648)
T PRK10535        186 ILHQ-LRDRGHTVIIVTHDPQ  205 (648)
T ss_pred             HHHH-HHhcCCEEEEECCCHH
Confidence            3333 2345899999999875

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.76  E-value=8.3e-08  Score=80.49  Aligned_cols=83  Identities=20%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcc--eecCC
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL--LLAQP  179 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~--~~~~~  179 (271)
                      ..|+.+.-  -++.|+++.|.|.||+|||||++.+++.+.+++|. ++++......   ..++..+.-++|++  ..+..
T Consensus        20 ~~l~~~sL--~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~-I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~   96 (263)
T COG1101          20 RALNGLSL--EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ-ILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE   96 (263)
T ss_pred             HHHhcCce--eecCCceEEEEcCCCccHHHHHHHhhCccccCCce-EEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence            34454444  68999999999999999999999999999999998 4555543322   13344455567765  34556


Q ss_pred             CCHHHHHHHHH
Q 024152          180 DCGEQALSLVD  190 (271)
Q Consensus       180 ~~~~e~~~~~~  190 (271)
                      ++.+|++.++.
T Consensus        97 lTieENl~la~  107 (263)
T COG1101          97 LTIEENLALAE  107 (263)
T ss_pred             ccHHHHHHHHH
Confidence            78888876653

>PLN03232 ABC transporter C family member; Provisional

Probab=98.76  E-value=4.1e-08  Score=104.67  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=54.7

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~  178 (271)
                      |+.+.-  -+++|+.++|+||+|+|||||++.+.+...+++|.| ++++...   ....+++.+++.+|+..+++
T Consensus      1252 L~~isl--~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I-~IdG~di~~i~~~~lR~~i~iVpQdp~LF~ 1323 (1495)
T PLN03232       1252 LHGLSF--FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLFS 1323 (1495)
T ss_pred             cccceE--EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE-EECCEEhhhCCHHHHHhhcEEECCCCeeeC
Confidence            444443  688999999999999999999999999999999985 5554332   22467888999999877764

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=3e-08  Score=92.77  Aligned_cols=63  Identities=33%  Similarity=0.363  Sum_probs=51.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceec
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLA  177 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~  177 (271)
                      -+.+||-++|.|++||||||++..+++...++.|.+.+-+.+...  ++.+...+++..|+..++
T Consensus       360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF  424 (573)
T COG4987         360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF  424 (573)
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence            577999999999999999999999999999999997776655332  334777888888876554

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.76  E-value=4.4e-08  Score=88.66  Aligned_cols=63  Identities=21%  Similarity=0.251  Sum_probs=44.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceec
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLA  177 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~  177 (271)
                      .+.+||++-|.|.||||||||++.+.+..+|++|.+.+.+..-+.+  .++++-+.-.+.++.++
T Consensus       345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF  409 (546)
T COG4615         345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF  409 (546)
T ss_pred             EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhh
Confidence            5789999999999999999999999999999999855544322222  24444444444444333

>PLN03130 ABC transporter C family member; Provisional

Probab=98.75  E-value=4.5e-08  Score=104.72  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=54.7

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecC
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~  178 (271)
                      |+.+.-  -+++|+.++|+||+|+|||||++.+.+...+.+|. +++++....   ...+++.+++.+|+..++.
T Consensus      1255 L~~is~--~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~-I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~ 1326 (1622)
T PLN03130       1255 LHGLSF--EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR-ILIDGCDISKFGLMDLRKVLGIIPQAPVLFS 1326 (1622)
T ss_pred             ecceeE--EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCce-EEECCEecccCCHHHHHhccEEECCCCcccc
Confidence            444443  68899999999999999999999999999999998 455554322   2467888999999876653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.75  E-value=1.4e-08  Score=99.81  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      -+.+|++++|+||||+|||||++.|++...+.+|.|.+
T Consensus       334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~  371 (638)
T PRK10636        334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL  371 (638)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence            67899999999999999999999999999888887544

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.74  E-value=3.1e-08  Score=93.99  Aligned_cols=38  Identities=29%  Similarity=0.437  Sum_probs=34.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      .+++|++++|.|+||+|||||++.|++...+..|.|.+
T Consensus        46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I   83 (549)
T PRK13545         46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI   83 (549)
T ss_pred             EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            67799999999999999999999999999888887654

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.73  E-value=3.4e-08  Score=90.78  Aligned_cols=35  Identities=31%  Similarity=0.529  Sum_probs=33.2

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG  148 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g  148 (271)
                      |.+..||++++.||||.|||||++.+|+.+.|+.|
T Consensus       362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg  396 (591)
T COG1245         362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG  396 (591)
T ss_pred             CeeecceEEEEECCCCcchHHHHHHHhccccCCCC
Confidence            78999999999999999999999999999998866

>PTZ00243 ABC transporter; Provisional

Probab=98.73  E-value=5.3e-08  Score=103.97  Aligned_cols=63  Identities=21%  Similarity=0.237  Sum_probs=51.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|+||+|+|||||++.+.+...+.+|.| ++++...   ..+.+++.+++.+|+..+++
T Consensus      1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243       1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCcccc
Confidence            577999999999999999999999999999999985 4554332   22467888999999877664

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=98.71  E-value=7.4e-08  Score=79.05  Aligned_cols=124  Identities=23%  Similarity=0.287  Sum_probs=66.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccE
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV  200 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~l  200 (271)
                      ++.|.|++|+|||+|+.+++..   .+++++|+.+.......+.+++.-- +..+-....+.+........+....+.+.
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H-~~~R~~~w~t~E~~~~l~~~l~~~~~~~~   76 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARH-RKRRPAHWRTIETPRDLVSALKELDPGDV   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHH-HHhCCCCceEeecHHHHHHHHHhcCCCCE
Confidence            5789999999999999999865   4568899998877765544432211 11111111122222222222221125678


Q ss_pred             EEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152          201 VVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       201 vvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                      |+||.++.....-...+ .+..     ...+......|....++.++++|+++-
T Consensus        77 VLIDclt~~~~n~l~~~-~~~~-----~~~~~~~i~~l~~~l~~~~~~~viVsn  124 (169)
T cd00544          77 VLIDCLTLWVTNLLFAD-LEEW-----EAAIADEIDALLAAVRNKPGTLILVSN  124 (169)
T ss_pred             EEEEcHhHHHHHhCCCc-cccc-----hhHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            99999987753211111 0100     001223334344444567777766653

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.71  E-value=1.4e-07  Score=80.47  Aligned_cols=47  Identities=26%  Similarity=0.223  Sum_probs=39.5

Q ss_pred             cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      +..|+.+.-  -+.+|+.++|+|+||+|||||++.|++...|++|.|..
T Consensus        40 ~~aL~disf--~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v   86 (249)
T COG1134          40 FWALKDISF--EIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV   86 (249)
T ss_pred             EEEecCceE--EEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEE
Confidence            344555544  67799999999999999999999999999999998554

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=98.70  E-value=8.3e-08  Score=89.00  Aligned_cols=126  Identities=19%  Similarity=0.217  Sum_probs=78.1

Q ss_pred             cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecC
Q 024152          102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~  178 (271)
                      +|-+-|..+--  -++||+.++++||+|+||||+++.+......++|. +-+++.+...   ..+++.+|++||+-.+++
T Consensus       549 p~k~vl~disF--~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGs-I~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN  625 (790)
T KOG0056|consen  549 PGKPVLSDISF--TVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS-ITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN  625 (790)
T ss_pred             CCCceeecceE--EecCCcEEEEECCCCCchhHHHHHHHHHhhccCce-EEEcCchHHHHHHHHHHHhcCcccCcceeec
Confidence            44455555443  68899999999999999999999999999999986 5566654432   367889999998754442


Q ss_pred             C------------CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH
Q 024152          179 P------------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM  231 (271)
Q Consensus       179 ~------------~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l  231 (271)
                      +            .+.||+.+.++...- ++--+-+-|.-....+...+.-+.|++||+..+|.+
T Consensus       626 dTI~yNIryak~~AsneevyaAAkAA~I-HdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti  689 (790)
T KOG0056|consen  626 DTILYNIRYAKPSASNEEVYAAAKAAQI-HDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI  689 (790)
T ss_pred             ceeeeheeecCCCCChHHHHHHHHHhhH-HHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH
Confidence            2            234555554443210 111111112222222333344445777777777766

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.70  E-value=8.8e-08  Score=102.30  Aligned_cols=69  Identities=22%  Similarity=0.225  Sum_probs=54.5

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~  178 (271)
                      |+.+.-  -+++|+.++|+||+|+|||||++.+.+...+.+|. +++++...   ....+++.+++.+|+..+++
T Consensus      1302 L~~is~--~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~-I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~ 1373 (1522)
T TIGR00957      1302 LRHINV--TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE-IIIDGLNIAKIGLHDLRFKITIIPQDPVLFS 1373 (1522)
T ss_pred             ccceeE--EEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe-EEECCEEccccCHHHHHhcCeEECCCCcccC
Confidence            444443  68899999999999999999999999999999998 55554332   22467888999999876664

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.68  E-value=1.1e-07  Score=100.85  Aligned_cols=38  Identities=16%  Similarity=0.063  Sum_probs=32.9

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      -|+.+.-  -+++|+.++|+|++||||||++..+++...+
T Consensus      1183 vL~~lsl--~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1183 IYKDLTF--SCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             cccCeeE--EEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            3554443  6889999999999999999999999999987

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.68  E-value=1.4e-08  Score=99.80  Aligned_cols=38  Identities=29%  Similarity=0.461  Sum_probs=34.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      .+++|++++|+|+||||||||++.|++...++.|.|.+
T Consensus        23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~   60 (638)
T PRK10636         23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF   60 (638)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence            67799999999999999999999999998888887654

>PLN03073 ABC transporter F family; Provisional

Probab=98.66  E-value=3.7e-08  Score=97.72  Aligned_cols=37  Identities=24%  Similarity=0.412  Sum_probs=34.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV  151 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~  151 (271)
                      .+++|++++|.|+||+|||||++.|++...+.+|.|.
T Consensus       531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~  567 (718)
T PLN03073        531 GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF  567 (718)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEE
Confidence            6789999999999999999999999999998888754

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.66  E-value=1.6e-07  Score=100.15  Aligned_cols=62  Identities=21%  Similarity=0.282  Sum_probs=50.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|+|++|+|||||++.+++... .+|. +++++....   ...+++.+++.+|+..+++
T Consensus      1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~-I~IdG~di~~i~~~~lR~~is~IpQdp~LF~ 1305 (1490)
T TIGR01271      1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGE-IQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS 1305 (1490)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE-EEECCEEcccCCHHHHHhceEEEeCCCccCc
Confidence            688999999999999999999999999986 6777 456554322   2467888999999887764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.63  E-value=1.6e-07  Score=89.76  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      .+.+|+-|+|+|+||+|||||++.|++...+..|.|..
T Consensus        25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~   62 (530)
T COG0488          25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR   62 (530)
T ss_pred             eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEee
Confidence            67799999999999999999999999999888776443

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.62  E-value=1.3e-07  Score=96.23  Aligned_cols=62  Identities=31%  Similarity=0.426  Sum_probs=52.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceec
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLA  177 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~  177 (271)
                      -+|+|+.++|+|++||||||+...+.+...|..|. ++++++...   .+.++..+|++.|.+.++
T Consensus       375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~-V~idG~di~~~~~~~lr~~iglV~QePvlF  439 (1228)
T KOG0055|consen  375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE-VLIDGEDIRNLNLKWLRSQIGLVSQEPVLF  439 (1228)
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce-EEEcCccchhcchHHHHhhcCeeeechhhh
Confidence            58999999999999999999999999999999998 567765443   346788999999987554

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.60  E-value=5.6e-07  Score=75.81  Aligned_cols=29  Identities=24%  Similarity=0.267  Sum_probs=25.9

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +..|++++|.||||+|||||++.|++...
T Consensus        22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~   50 (199)
T cd03283          22 MEKKNGILITGSNMSGKSTFLRTIGVNVI   50 (199)
T ss_pred             EcCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence            45689999999999999999999998764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.58  E-value=1.3e-07  Score=85.96  Aligned_cols=139  Identities=19%  Similarity=0.258  Sum_probs=86.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCCC---HH----HHHHcCCcCCcceec--CCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD---PS----LAETIGVKTENLLLA--QPD  180 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~~---~~----~~~~~g~~~~~~~~~--~~~  180 (271)
                      -+.+||.++|+|.+|+|||..++.+++.+..     .+|.+. |+++....   +.    +-.++++.||..-..  +..
T Consensus        32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~-f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~  110 (534)
T COG4172          32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSIL-FDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLH  110 (534)
T ss_pred             eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeE-EcChhhhcCCHHHHhhhcccceEEEecccccccCcHh
Confidence            5669999999999999999999999998875     245544 44443321   22    233567777765332  222


Q ss_pred             CHH-HHHHHHHHHH-------hc---CCccEEEEcchhhhcC--CCccCCccchhhHHHHHHHH----------------
Q 024152          181 CGE-QALSLVDTLI-------RS---GSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLM----------------  231 (271)
Q Consensus       181 ~~~-e~~~~~~~l~-------~~---~~~~lvvID~l~~~~~--~~~l~~~~g~~~~~~~~~~l----------------  231 (271)
                      +.. ++.+.++...       +.   .-++.|-|........  .+++++  |++||++.+.++                
T Consensus       111 tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG--GqRQRVMIAMALan~P~lLIADEPTTAL  188 (534)
T COG4172         111 TIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG--GQRQRVMIAMALANEPDLLIADEPTTAL  188 (534)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc--chhhHHHHHHHHcCCCCeEeecCCcchh
Confidence            333 2222111100       00   0123333333222111  245555  899999999887                


Q ss_pred             -----HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          232 -----SQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       232 -----~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                           ++++..|+.+-+++|.++++++|-.
T Consensus       189 DVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL  218 (534)
T COG4172         189 DVTVQAQILDLLKELQAELGMAILFITHDL  218 (534)
T ss_pred             hhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence                 5788888888999999999999965

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.54  E-value=3.4e-07  Score=90.03  Aligned_cols=38  Identities=21%  Similarity=0.314  Sum_probs=34.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      -+++|++++|+|+||+|||||++.|++...+++|.|.+
T Consensus        25 ~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~   62 (635)
T PRK11147         25 HIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY   62 (635)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence            57799999999999999999999999998888888654

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.53  E-value=4.7e-07  Score=74.35  Aligned_cols=120  Identities=18%  Similarity=0.243  Sum_probs=66.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCC----cCCcceec-CCCCHHHHHHHHHHHHh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV----KTENLLLA-QPDCGEQALSLVDTLIR  194 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~----~~~~~~~~-~~~~~~e~~~~~~~l~~  194 (271)
                      .++.|.|+||+|||||+..++...   +.+++|+.+......++.+++..    -++..... .+.+..+   .+...  
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~---~i~~~--   73 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAE---LLRAD--   73 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHH---HHHhh--
Confidence            579999999999999999997653   34578888766665544333211    12222111 1112222   22221  


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ..+.++|+||++..+.. ..+..  ..      ...+...+..+....++.++++|+++.-.
T Consensus        74 ~~~~~~VlID~Lt~~~~-n~l~~--~~------~~~~~~~l~~li~~L~~~~~tvVlVs~Ev  126 (170)
T PRK05800         74 AAPGRCVLVDCLTTWVT-NLLFE--EG------EEAIAAEIDALLAALQQLPAKIILVTNEV  126 (170)
T ss_pred             cCCCCEEEehhHHHHHH-HHhcc--cc------hHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            23466899999988752 11100  00      01122334445555567888888887544

>PF13479 AAA_24: AAA domain

Probab=98.52  E-value=2.2e-06  Score=72.89  Aligned_cols=125  Identities=24%  Similarity=0.211  Sum_probs=74.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh-cCC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR-SGS  197 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~-~~~  197 (271)
                      +-.++|.|+||+|||||+..+        ++++|++.|..........      +....+..+.+++...+..+.. ...
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~~~------~~~~i~i~s~~~~~~~~~~l~~~~~~   68 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKFLD------DGDVIPITSWEDFLEALDELEEDEAD   68 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhhhc------CCCeeCcCCHHHHHHHHHHHHhccCC
Confidence            446899999999999999887        4579999987754311100      1122233377777776655432 457


Q ss_pred             ccEEEEcchhhhcC---CCcc-------C--Cccc-hhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccccc
Q 024152          198 VDVVVVDSVAALVP---KGEL-------D--GEMG-DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINL  260 (271)
Q Consensus       198 ~~lvvID~l~~~~~---~~~l-------~--~~~g-~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~~  260 (271)
                      .+.||||++..+..   ..-.       .  +.++ ..--+.....+.+.++.   +....+..||+++|......
T Consensus        69 y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~---l~~~~~~~VI~tah~~~~~~  141 (213)
T PF13479_consen   69 YDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDK---LLNALGKNVIFTAHAKEEED  141 (213)
T ss_pred             CCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHH---HHHHCCCcEEEEEEEEEEEc
Confidence            99999999875421   0001       0  0001 11122333334444443   35578999999999886544

>PLN03073 ABC transporter F family; Provisional

Probab=98.49  E-value=1.7e-07  Score=93.05  Aligned_cols=42  Identities=24%  Similarity=0.294  Sum_probs=35.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH---hhcCCeEEEEcCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA---QRQGGYCVFIDAE  156 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~---~~~~g~v~~~~~e  156 (271)
                      -+.+|+.++|+|+||+|||||++.|++..   .+.++.+.|++.+
T Consensus       199 ~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~  243 (718)
T PLN03073        199 TLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE  243 (718)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence            57899999999999999999999999743   3567788887543

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=98.47  E-value=7.9e-07  Score=90.44  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=59.2

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      ..+++|++.++.|+||+||||+.+++.+...+.+|.+.+-+.....  .. ...+.+|+.||.-.+.+.+|..|.+.+
T Consensus       586 ~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~  663 (885)
T KOG0059|consen  586 FAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEF  663 (885)
T ss_pred             EEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHH
Confidence            3899999999999999999999999999999999985542322222  11 367789999999888888887766543

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.46  E-value=4.7e-07  Score=76.13  Aligned_cols=30  Identities=27%  Similarity=0.433  Sum_probs=26.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      -+++| +++|.||||+|||||+..+++...+
T Consensus        19 ~~~~g-~~~i~G~nGsGKStll~al~~l~~~   48 (197)
T cd03278          19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGE   48 (197)
T ss_pred             ecCCC-cEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46688 9999999999999999999887643

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.46  E-value=2.1e-06  Score=66.81  Aligned_cols=79  Identities=28%  Similarity=0.428  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH-HHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL-AETIGVKTENLLLAQPDCGEQALSLVDTLIRSG  196 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~-~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~  196 (271)
                      .+..+.|.|+||+|||++++.++......+..+++++......... .......              ............
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~   83 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELAEKA   83 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhhccC
Confidence            5778999999999999999999998876667778877543332211 1000000              111111222234


Q ss_pred             CccEEEEcchhhhc
Q 024152          197 SVDVVVVDSVAALV  210 (271)
Q Consensus       197 ~~~lvvID~l~~~~  210 (271)
                      ...++++|.+..+.
T Consensus        84 ~~~~lilDe~~~~~   97 (151)
T cd00009          84 KPGVLFIDEIDSLS   97 (151)
T ss_pred             CCeEEEEeChhhhh
Confidence            67899999988763

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.46  E-value=1.6e-06  Score=76.36  Aligned_cols=86  Identities=21%  Similarity=0.122  Sum_probs=54.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-C--CHHHHHHcCCcCCcceecCCCCHHHHHHH---HHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-L--DPSLAETIGVKTENLLLAQPDCGEQALSL---VDTLI  193 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~--~~~~~~~~g~~~~~~~~~~~~~~~e~~~~---~~~l~  193 (271)
                      .-++|.|+||+|||||++.+++...+..|.+.+.+..-. .  ..+++..+++.+|.. ++..+++.+...+   +..+.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k~~~~~~~i  190 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPKAEGMMMLI  190 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchHHHHHHHHH
Confidence            578999999999999999999999998888554332211 1  135555566666643 2222332221111   22233


Q ss_pred             hcCCccEEEEcch
Q 024152          194 RSGSVDVVVVDSV  206 (271)
Q Consensus       194 ~~~~~~lvvID~l  206 (271)
                      ....++++++|..
T Consensus       191 ~~~~P~villDE~  203 (270)
T TIGR02858       191 RSMSPDVIVVDEI  203 (270)
T ss_pred             HhCCCCEEEEeCC
Confidence            3468999999994

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.46  E-value=1.1e-06  Score=74.06  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +|++++|.|+||+|||||++.++....
T Consensus        28 ~~~~~~l~G~Ng~GKStll~~i~~~~~   54 (202)
T cd03243          28 SGRLLLITGPNMGGKSTYLRSIGLAVL   54 (202)
T ss_pred             CCeEEEEECCCCCccHHHHHHHHHHHH
Confidence            679999999999999999999996543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.45  E-value=1.4e-06  Score=90.57  Aligned_cols=62  Identities=21%  Similarity=0.319  Sum_probs=51.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceec
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLA  177 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~  177 (271)
                      -++|||-++|+||.|+|||||++.+-+...+.+|. +.+|+-+..   -..+++++++.||++.++
T Consensus      1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~-I~IDgvdI~~igL~dLRsrlsIIPQdPvLF 1226 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGE-ILIDGVDISKIGLHDLRSRLSIIPQDPVLF 1226 (1381)
T ss_pred             EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCe-EEEcCeecccccHHHHHhcCeeeCCCCcee
Confidence            47799999999999999999999999999998887 556654332   247889999999987665

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.42  E-value=5.4e-07  Score=96.16  Aligned_cols=61  Identities=18%  Similarity=0.317  Sum_probs=45.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.||+|+|||||++.|++...+..|.|. +++          .++|.+|+..+++ .++.|++.
T Consensus       448 ~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~-~~g----------~iayv~Q~~~l~~-~Ti~eNI~  508 (1490)
T TIGR01271       448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK-HSG----------RISFSPQTSWIMP-GTIKDNII  508 (1490)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECC----------EEEEEeCCCccCC-ccHHHHHH
Confidence            5779999999999999999999999999999888754 332          2556666554443 25544443

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03130 ABC transporter C family member; Provisional

Probab=98.42  E-value=5.8e-07  Score=96.43  Aligned_cols=53  Identities=23%  Similarity=0.347  Sum_probs=42.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEcCCCCCCHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|++++|+|++|+|||||+..+++...+.+ |.|.+           ...++|.+|+..+++
T Consensus       639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-----------~~~Iayv~Q~p~Lfn  692 (1622)
T PLN03130        639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-----------RGTVAYVPQVSWIFN  692 (1622)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------cCeEEEEcCccccCC
Confidence            578999999999999999999999999999988 77542           234566666655443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.42  E-value=2.7e-06  Score=81.51  Aligned_cols=121  Identities=19%  Similarity=0.266  Sum_probs=71.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe--------EEEEcCCCCC---C-H--H----------------HH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY--------CVFIDAEHAL---D-P--S----------------LA  164 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~--------v~~~~~e~~~---~-~--~----------------~~  164 (271)
                      .+++|+-++|+||||+|||||++.|++...+..|.        +.||+-+...   . .  .                ..
T Consensus       344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L  423 (530)
T COG0488         344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL  423 (530)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence            78899999999999999999999999988876553        3455432210   0 0  0                11


Q ss_pred             HHcCCcCCcce-ecCCCCH-HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024152          165 ETIGVKTENLL-LAQPDCG-EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL  242 (271)
Q Consensus       165 ~~~g~~~~~~~-~~~~~~~-~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~la  242 (271)
                      .++++..+... ....++. +..+-.+..+. -.++.++++|..+...+.                    .....|....
T Consensus       424 ~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll-~~~pNvLiLDEPTNhLDi--------------------~s~~aLe~aL  482 (530)
T COG0488         424 GRFGFTGEDQEKPVGVLSGGEKARLLLAKLL-LQPPNLLLLDEPTNHLDI--------------------ESLEALEEAL  482 (530)
T ss_pred             HHcCCChHHHhCchhhcCHhHHHHHHHHHHh-ccCCCEEEEcCCCccCCH--------------------HHHHHHHHHH
Confidence            12222222110 0111222 22222222222 247889999998877631                    2233344446


Q ss_pred             hhcCcEEEEEcccc
Q 024152          243 SLSQTILIFINQVF  256 (271)
Q Consensus       243 ke~~~~Vi~~sql~  256 (271)
                      .++.-+||++||-+
T Consensus       483 ~~f~Gtvl~VSHDr  496 (530)
T COG0488         483 LDFEGTVLLVSHDR  496 (530)
T ss_pred             HhCCCeEEEEeCCH
Confidence            78899999999976

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=98.40  E-value=5.8e-06  Score=70.54  Aligned_cols=125  Identities=15%  Similarity=0.095  Sum_probs=69.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCC-cCCcceecCCCCHHHHHHHHHHHHh-cC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV-KTENLLLAQPDCGEQALSLVDTLIR-SG  196 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~-~~~~~~~~~~~~~~e~~~~~~~l~~-~~  196 (271)
                      ...+.|+|+||+||||+++.++       ++.++++.+......    .|. ..+-.....+...+++...+..+.. ..
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~l----~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~   80 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKVL----IGDENVDIADHDDMPPIQAMVEFYVMQNIQAV   80 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchhc----cCCCCCceeecCCCCCHHHHHHHHHHHHhccc
Confidence            4679999999999999998873       345667766543221    111 1111222233455566555543321 34


Q ss_pred             CccEEEEcchhhhcC-------CCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          197 SVDVVVVDSVAALVP-------KGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       197 ~~~lvvID~l~~~~~-------~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      +++.||||++..+..       +..-++.+.....+.....+...++.    +++.++.||+++|....
T Consensus        81 ~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~----L~~~g~nII~tAhe~~~  145 (220)
T TIGR01618        81 KYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTV----LKESNKNIYATAWELTN  145 (220)
T ss_pred             cCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHH----HHhCCCcEEEEEeeccc
Confidence            689999999987643       11111111111112222333333333    35689999999999643

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.38  E-value=3.1e-06  Score=86.43  Aligned_cols=63  Identities=27%  Similarity=0.363  Sum_probs=52.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.++|+||+||||||..-.+-+...+..|. +.+|+.+...   +.++++++++.|.+.++.
T Consensus      1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~-V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK-VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN 1077 (1228)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe-EEECCcccccCCHHHHHHhcceeccCchhhc
Confidence            67899999999999999999999999999999997 5566544332   467889999999876664

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.37  E-value=1.1e-05  Score=72.75  Aligned_cols=90  Identities=18%  Similarity=0.250  Sum_probs=55.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHH-HHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQA-LSLV  189 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~-~~~~  189 (271)
                      .+|.+++|+||||+||||++..++..+.+.+++|.+++...-..      ..++...++..-.  .....+.... ...+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~--~~~~~dpa~~v~~~l  189 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIA--QKEGADPASVAFDAI  189 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEE--eCCCCCHHHHHHHHH
Confidence            36899999999999999999999999998888988887643211      1234444432210  0111122111 1111


Q ss_pred             HHHHhcCCccEEEEcchhhh
Q 024152          190 DTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       190 ~~l~~~~~~~lvvID~l~~~  209 (271)
                      .. ....+.++|+||....+
T Consensus       190 ~~-~~~~~~D~ViIDTaGr~  208 (318)
T PRK10416        190 QA-AKARGIDVLIIDTAGRL  208 (318)
T ss_pred             HH-HHhCCCCEEEEeCCCCC
Confidence            11 12357899999986544

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.36  E-value=1.4e-06  Score=75.40  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      |++++|.||||+|||||+..|+..
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~~~   46 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIRFV   46 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999999854

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PLN03232 ABC transporter C family member; Provisional

Probab=98.35  E-value=5.3e-07  Score=96.27  Aligned_cols=37  Identities=30%  Similarity=0.449  Sum_probs=33.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV  151 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~  151 (271)
                      -+++|++++|+|++|||||||++.+++...+.+|.+.
T Consensus       639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~  675 (1495)
T PLN03232        639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV  675 (1495)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence            5789999999999999999999999999998876543

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.35  E-value=1.9e-06  Score=80.74  Aligned_cols=53  Identities=25%  Similarity=0.294  Sum_probs=45.4

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      +.+.||+..+|.++   -+.+|+.++|.|++|+|||||+..+++...+..+.+.++
T Consensus       140 ~~l~tg~~vid~l~---~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~  192 (438)
T PRK07721        140 EPMEVGVRAIDSLL---TVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALI  192 (438)
T ss_pred             cccccchhhhheee---eecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEE
Confidence            46889999999995   588999999999999999999999999887776644443

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.35  E-value=3.7e-06  Score=80.82  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=30.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY  149 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~  149 (271)
                      .+++|+-+.|.|+||||||||.+.|++...-..|.
T Consensus       415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~  449 (604)
T COG4178         415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR  449 (604)
T ss_pred             eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc
Confidence            56799999999999999999999999987754444

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.32  E-value=6.9e-06  Score=66.77  Aligned_cols=120  Identities=15%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCC-CHHHHHHHHHHHHhcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD-CGEQALSLVDTLIRSG  196 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~-~~~e~~~~~~~l~~~~  196 (271)
                      .+.+++|.||||+|||+++..++..+....+.+...+........-+..+.+.+..   .... ...+...+++.+....
T Consensus        20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~---~~lS~G~~~~~~la~~L~~~~   96 (162)
T cd03227          20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTR---LQLSGGEKELSALALILALAS   96 (162)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehhe---eeccccHHHHHHHHHHHHhcC
Confidence            45799999999999999999988877765433222110000000000000000000   1111 1345555556554333


Q ss_pred             --CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          197 --SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       197 --~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                        .++++++|++..-.+.             .....+...   +.+..++ ++++++++|...
T Consensus        97 ~~~~~llllDEp~~gld~-------------~~~~~l~~~---l~~~~~~-~~~vii~TH~~~  142 (162)
T cd03227          97 LKPRPLYILDEIDRGLDP-------------RDGQALAEA---ILEHLVK-GAQVIVITHLPE  142 (162)
T ss_pred             CCCCCEEEEeCCCCCCCH-------------HHHHHHHHH---HHHHHhc-CCEEEEEcCCHH
Confidence              7899999998755420             111223333   3333455 899999999764

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.31  E-value=6e-06  Score=72.39  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=24.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVI  140 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia  140 (271)
                      .+|.|.+++|.|.+|||||||+..+.
T Consensus        17 ~ip~g~~~~vtGvSGsGKStL~~~~l   42 (261)
T cd03271          17 DIPLGVLTCVTGVSGSGKSSLINDTL   42 (261)
T ss_pred             eccCCcEEEEECCCCCchHHHHHHHH
Confidence            68899999999999999999999774

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00243 ABC transporter; Provisional

Probab=98.31  E-value=5e-07  Score=96.64  Aligned_cols=60  Identities=17%  Similarity=0.336  Sum_probs=45.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|.|+||+|||||++.|++...+..|.|.+ .          ..+++.+|+..+++ .++.+++
T Consensus       682 ~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~-~----------~~i~yv~Q~~~l~~-~Tv~enI  741 (1560)
T PTZ00243        682 SVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA-E----------RSIAYVPQQAWIMN-ATVRGNI  741 (1560)
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-C----------CeEEEEeCCCccCC-CcHHHHH
Confidence            57799999999999999999999999999998887543 1          24666666655432 3555544

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.30  E-value=2.3e-06  Score=91.57  Aligned_cols=60  Identities=18%  Similarity=0.397  Sum_probs=44.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|+|++|+|||||++.+++...+..|.+. ++.          .+++.+|+..+++ .++.|++
T Consensus       660 ~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~-~~g----------~i~yv~Q~~~l~~-~Ti~eNI  719 (1522)
T TIGR00957       660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH-MKG----------SVAYVPQQAWIQN-DSLRENI  719 (1522)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE-ECC----------EEEEEcCCccccC-CcHHHHh
Confidence            5789999999999999999999999999999888754 332          3556666554432 3444444

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.29  E-value=4.8e-06  Score=70.06  Aligned_cols=25  Identities=40%  Similarity=0.490  Sum_probs=22.3

Q ss_pred             CCCC-cEEEEEcCCCCcHHHHHHHHH
Q 024152          116 LPKG-RVVEIYGPEASGKTTLALHVI  140 (271)
Q Consensus       116 l~~G-~li~I~G~~G~GKTtl~~~ia  140 (271)
                      +.+| ++++|.||||+|||||++.++
T Consensus        24 i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          24 LGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ECCCceEEEEECCCCCChHHHHHHHH
Confidence            3477 489999999999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.28  E-value=7.3e-07  Score=83.08  Aligned_cols=47  Identities=21%  Similarity=0.217  Sum_probs=41.7

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ  146 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~  146 (271)
                      -+.+.||+..||.++   -+.+|+.++|.|+||+|||||+.+|++...++
T Consensus       136 ~~~l~TGi~aID~ll---~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d  182 (434)
T PRK07196        136 DTPLDVGVNAINGLL---TIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD  182 (434)
T ss_pred             ccccccceeeccceE---eEecceEEEEECCCCCCccHHHHHHhcccCCC
Confidence            367899999999995   58999999999999999999999998876554

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.28  E-value=6.2e-06  Score=63.74  Aligned_cols=118  Identities=21%  Similarity=0.272  Sum_probs=62.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCC-ccE
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS-VDV  200 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~-~~l  200 (271)
                      ++|.||||+|||+++..++....   -+++.++.......               ........+...+.... ... +.+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~-~~~~~~v   61 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAK-KSAKPCV   61 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHH-HTSTSEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc---cccccccccccccc---------------ccccccccccccccccc-cccccee
Confidence            57999999999999999998863   34555553211110               11112223333333332 333 899


Q ss_pred             EEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhh-cCcEEEEEcccccccchhhhh
Q 024152          201 VVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL-SQTILIFINQVFSINLNKIID  265 (271)
Q Consensus       201 vvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake-~~~~Vi~~sql~~~~~~~~l~  265 (271)
                      ++||.+..+.+..  ... ...   .....+......+....+. .++.||+++.. ...+.+.+.
T Consensus        62 l~iDe~d~l~~~~--~~~-~~~---~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~-~~~i~~~l~  120 (132)
T PF00004_consen   62 LFIDEIDKLFPKS--QPS-SSS---FEQRLLNQLLSLLDNPSSKNSRVIVIATTNS-PDKIDPALL  120 (132)
T ss_dssp             EEEETGGGTSHHC--STS-SSH---HHHHHHHHHHHHHHTTTTTSSSEEEEEEESS-GGGSCHHHH
T ss_pred             eeeccchhccccc--ccc-ccc---ccccccceeeecccccccccccceeEEeeCC-hhhCCHhHH
Confidence            9999998877533  110 111   1112222333333322222 45788888776 333444433

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.27  E-value=3.1e-06  Score=86.74  Aligned_cols=77  Identities=17%  Similarity=0.186  Sum_probs=53.1

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE  183 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~  183 (271)
                      -|+.+.|  =+.||-+++|.|++|+|||||+..+|+....  -.|. +.+++-.......++..||..|+-......|+.
T Consensus       806 LL~~V~G--~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gd-i~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr  882 (1391)
T KOG0065|consen  806 LLNNVSG--AFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGD-ILISGFPKDQETFARVSGYVEQQDIHSPELTVR  882 (1391)
T ss_pred             hhhcCce--EecCCceeehhcCCCCchHHHHHHHhcCcccceEEeE-EEECCeeCchhhhccccceeecccccCcccchH
Confidence            3455554  7899999999999999999999999986532  1233 455554444356677889887764444555655


Q ss_pred             HH
Q 024152          184 QA  185 (271)
Q Consensus       184 e~  185 (271)
                      |-
T Consensus       883 ES  884 (1391)
T KOG0065|consen  883 ES  884 (1391)
T ss_pred             HH
Confidence            43

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=5.9e-06  Score=78.64  Aligned_cols=129  Identities=24%  Similarity=0.368  Sum_probs=81.9

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -|+.|-.=++|.||||||||.||+.||+.+..     =|++..   .+.+-+  |+.        --+.+.++..+... 
T Consensus       218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~is---ApeivS--GvS--------GESEkkiRelF~~A-  278 (802)
T KOG0733|consen  218 LGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-----PFLSIS---APEIVS--GVS--------GESEKKIRELFDQA-  278 (802)
T ss_pred             cCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-----ceEeec---chhhhc--ccC--------cccHHHHHHHHHHH-
Confidence            48999999999999999999999999998763     233211   011110  111        12334444444443 


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhh--cCcEEEEEcccc-cccchhhhhhh
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL--SQTILIFINQVF-SINLNKIIDES  267 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake--~~~~Vi~~sql~-~~~~~~~l~~s  267 (271)
                      ....+++++||.+..+.|..+      ..|+.+..|.+++.+..+..+-.+  .|.+|+++.-.. -+.+-++||..
T Consensus       279 ~~~aPcivFiDeIDAI~pkRe------~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRa  349 (802)
T KOG0733|consen  279 KSNAPCIVFIDEIDAITPKRE------EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRA  349 (802)
T ss_pred             hccCCeEEEeecccccccchh------hHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhcc
Confidence            346799999999999886433      356667777777777766554333  357777775433 34455666653

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.23  E-value=4.2e-05  Score=67.82  Aligned_cols=115  Identities=19%  Similarity=0.187  Sum_probs=77.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEcCCCCCCH-----HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~------g~v~~~~~e~~~~~-----~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -.+.|+|++++|||+++..+.....+..      -+|+++......+.     .+...+|.+...     ..+..+....
T Consensus        62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-----~~~~~~~~~~  136 (302)
T PF05621_consen   62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-----RDRVAKLEQQ  136 (302)
T ss_pred             CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-----CCCHHHHHHH
Confidence            4589999999999999999998765421      15777765433332     334455555421     2344555566


Q ss_pred             HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          189 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       189 ~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      +..+.+..+++++|||.+..+..        |..   ..++   +++..||.+..++.+|+|++.
T Consensus       137 ~~~llr~~~vrmLIIDE~H~lLa--------Gs~---~~qr---~~Ln~LK~L~NeL~ipiV~vG  187 (302)
T PF05621_consen  137 VLRLLRRLGVRMLIIDEFHNLLA--------GSY---RKQR---EFLNALKFLGNELQIPIVGVG  187 (302)
T ss_pred             HHHHHHHcCCcEEEeechHHHhc--------ccH---HHHH---HHHHHHHHHhhccCCCeEEec
Confidence            66677778999999999988763        322   2344   445555556899999999885

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13173 AAA_14: AAA domain

Probab=98.22  E-value=1.2e-05  Score=62.73  Aligned_cols=97  Identities=19%  Similarity=0.249  Sum_probs=60.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCc
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV  198 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~  198 (271)
                      +.+++|.|+.|+||||++++++.... ....++|++.+........     .+            ++.....+.. ..+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~-----~~------------~~~~~~~~~~-~~~~   62 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLA-----DP------------DLLEYFLELI-KPGK   62 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHh-----hh------------hhHHHHHHhh-ccCC
Confidence            57899999999999999999998776 4456788876544321100     00            0222222221 1267


Q ss_pred             cEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhc-CcEEEEEcccc
Q 024152          199 DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLS-QTILIFINQVF  256 (271)
Q Consensus       199 ~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~-~~~Vi~~sql~  256 (271)
                      .+++||.+|...                      .....++.+.+.. ++.|+++....
T Consensus        63 ~~i~iDEiq~~~----------------------~~~~~lk~l~d~~~~~~ii~tgS~~   99 (128)
T PF13173_consen   63 KYIFIDEIQYLP----------------------DWEDALKFLVDNGPNIKIILTGSSS   99 (128)
T ss_pred             cEEEEehhhhhc----------------------cHHHHHHHHHHhccCceEEEEccch
Confidence            889999998874                      1222333334444 78888887644

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.21  E-value=4.6e-06  Score=72.60  Aligned_cols=100  Identities=21%  Similarity=0.320  Sum_probs=58.1

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC--eEE-EEcCCCCCCH-HHHHHcCCcCCcceecCCC
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--YCV-FIDAEHALDP-SLAETIGVKTENLLLAQPD  180 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g--~v~-~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~  180 (271)
                      ..+|.++.   +.+|+.++|.|++|+|||||+..++.+......  .++ +...+..... .+.+.+   ..-+......
T Consensus         5 ~~id~~~~---i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I---~~~~v~~~~~   78 (249)
T cd01128           5 RVVDLFAP---IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV---KGEVIASTFD   78 (249)
T ss_pred             hheeeecc---cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh---ccEEEEecCC
Confidence            35676664   669999999999999999999999988776422  222 3244433322 233222   0111111111


Q ss_pred             -C-------HHHHHHHHHHHHhcCCccEEEEcchhhhc
Q 024152          181 -C-------GEQALSLVDTLIRSGSVDVVVVDSVAALV  210 (271)
Q Consensus       181 -~-------~~e~~~~~~~l~~~~~~~lvvID~l~~~~  210 (271)
                       .       .....+.++.+...+.--++++|+++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a  116 (249)
T cd01128          79 EPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA  116 (249)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhh
Confidence             1       12333445544444556689999998653

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.20  E-value=2.6e-06  Score=72.03  Aligned_cols=25  Identities=24%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      |.+| +++|.|+||+|||||+..+..
T Consensus        20 ~~~g-~~~i~G~NGsGKTTLl~ai~~   44 (204)
T cd03240          20 FFSP-LTLIVGQNGAGKTTIIEALKY   44 (204)
T ss_pred             cCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4456 999999999999999998864

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.20  E-value=1.2e-05  Score=75.51  Aligned_cols=120  Identities=21%  Similarity=0.254  Sum_probs=66.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+.++.-++|.||||+|||++++.++.....   ..+.+.....    .....|            .....+..+-....
T Consensus       213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~~---~fi~V~~seL----~~k~~G------------e~~~~vr~lF~~A~  273 (438)
T PTZ00361        213 GIKPPKGVILYGPPGTGKTLLAKAVANETSA---TFLRVVGSEL----IQKYLG------------DGPKLVRELFRVAE  273 (438)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---CEEEEecchh----hhhhcc------------hHHHHHHHHHHHHH
Confidence            7888889999999999999999999987642   2222221111    010011            11122221222233


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ...+.+++||.+..+..........++.   ..++.+.+.+..+..+....++.||++++..
T Consensus       274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~---e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~  332 (438)
T PTZ00361        274 ENAPSIVFIDEIDAIGTKRYDATSGGEK---EIQRTMLELLNQLDGFDSRGDVKVIMATNRI  332 (438)
T ss_pred             hCCCcEEeHHHHHHHhccCCCCCCcccH---HHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence            4568899999998776422211111221   2234455555555444445678888887643

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.18  E-value=1.2e-05  Score=68.83  Aligned_cols=35  Identities=26%  Similarity=0.243  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHH-HhhcCCe
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAE-AQRQGGY  149 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~-~~~~~g~  149 (271)
                      .+.+|++++|.||||+|||||++.+++. +..+.|.
T Consensus        27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~   62 (222)
T cd03287          27 SAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS   62 (222)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            4568999999999999999999999994 4455553

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.8e-05  Score=72.52  Aligned_cols=63  Identities=25%  Similarity=0.415  Sum_probs=51.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|+.+++.|++|+||||++..+-.....+.|. +.++.....   ...+++.+|+.||+-.+++
T Consensus       285 ~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~-I~id~qdir~vtq~slR~aIg~VPQDtvLFN  350 (497)
T COG5265         285 TIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS-ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN  350 (497)
T ss_pred             cccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce-EEEcchhHHHhHHHHHHHHhCcCcccceehh
Confidence            57899999999999999999999999999999996 556554332   2356788999999865553

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.16  E-value=7.7e-06  Score=75.94  Aligned_cols=121  Identities=21%  Similarity=0.298  Sum_probs=65.9

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -|++++.-+.|.||||+|||++++.++.....   ..+.+...    .......|            ..+..+..+-...
T Consensus       174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---~fi~i~~s----~l~~k~~g------------e~~~~lr~lf~~A  234 (398)
T PTZ00454        174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---TFIRVVGS----EFVQKYLG------------EGPRMVRDVFRLA  234 (398)
T ss_pred             cCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CEEEEehH----HHHHHhcc------------hhHHHHHHHHHHH
Confidence            47889999999999999999999999886532   22222210    01111111            1111111111223


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ....+.+++||.+..+.... .....+. . ...++.+.+.+..+..+....++.||++++.-
T Consensus       235 ~~~~P~ILfIDEID~i~~~r-~~~~~~~-d-~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~  294 (398)
T PTZ00454        235 RENAPSIIFIDEVDSIATKR-FDAQTGA-D-REVQRILLELLNQMDGFDQTTNVKVIMATNRA  294 (398)
T ss_pred             HhcCCeEEEEECHhhhcccc-ccccCCc-c-HHHHHHHHHHHHHhhccCCCCCEEEEEecCCc
Confidence            34578999999998876422 1110111 1 12234455555555443344577788887643

>PRK14974 cell division protein FtsY; Provisional

Probab=98.16  E-value=7.3e-05  Score=67.85  Aligned_cols=91  Identities=20%  Similarity=0.176  Sum_probs=56.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      ++.++.++|+||+||||++..++..+...+.+|++++......      +.++..+|+..-..  ....+..++...+-.
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~--~~g~dp~~v~~~ai~  216 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKH--KYGADPAAVAYDAIE  216 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecc--cCCCCHHHHHHHHHH
Confidence            3579999999999999999999998887777888877543211      12344555533211  111233333222222


Q ss_pred             HHhcCCccEEEEcchhhhc
Q 024152          192 LIRSGSVDVVVVDSVAALV  210 (271)
Q Consensus       192 l~~~~~~~lvvID~l~~~~  210 (271)
                      .....+.++|+||....+.
T Consensus       217 ~~~~~~~DvVLIDTaGr~~  235 (336)
T PRK14974        217 HAKARGIDVVLIDTAGRMH  235 (336)
T ss_pred             HHHhCCCCEEEEECCCccC
Confidence            2233567899999876553

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.15  E-value=5.6e-05  Score=63.51  Aligned_cols=87  Identities=22%  Similarity=0.252  Sum_probs=56.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .++.++||+|+||||.+-.+|......+.+|.+++......      +.+++.+++++-...  ...+..++...+.+..
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~--~~~~~~~~~~~~l~~~   79 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR--TESDPAEIAREALEKF   79 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS--TTSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh--cchhhHHHHHHHHHHH
Confidence            47899999999999999999998887777899988654332      245666676542211  1223444443333333


Q ss_pred             hcCCccEEEEcchhh
Q 024152          194 RSGSVDVVVVDSVAA  208 (271)
Q Consensus       194 ~~~~~~lvvID~l~~  208 (271)
                      ...+.++|+||....
T Consensus        80 ~~~~~D~vlIDT~Gr   94 (196)
T PF00448_consen   80 RKKGYDLVLIDTAGR   94 (196)
T ss_dssp             HHTTSSEEEEEE-SS
T ss_pred             hhcCCCEEEEecCCc
Confidence            456799999998543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.14  E-value=1.8e-05  Score=67.34  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +.+++|.||||+|||||++.++...
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~~~   53 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVALIV   53 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHH
Confidence            3799999999999999999998644

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.14  E-value=2.1e-05  Score=66.10  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDA  155 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~  155 (271)
                      +++|+||+|+||||++..++...... ++.++.+..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~   38 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED   38 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence            79999999999999999998888754 455555543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.14  E-value=2.5e-05  Score=67.02  Aligned_cols=22  Identities=41%  Similarity=0.736  Sum_probs=20.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLA  136 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~  136 (271)
                      -+++|++++|+|+||||||||+
T Consensus        17 ~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270          17 DIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             ecCCCcEEEEEcCCCCCHHHHH
Confidence            5779999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.14  E-value=3.1e-06  Score=70.39  Aligned_cols=37  Identities=27%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      +..|++++|+|+||+|||||++.+++...+..+. +.+
T Consensus        22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~-i~i   58 (186)
T cd01130          22 VEARKNILISGGTGSGKTTLLNALLAFIPPDERI-ITI   58 (186)
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCE-EEE
Confidence            4589999999999999999999999988766654 444

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=8.9e-06  Score=74.92  Aligned_cols=121  Identities=18%  Similarity=0.263  Sum_probs=74.6

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC--------eEEEEc--------CCCCCCHHHHHHcCCcCCcceec
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--------YCVFID--------AEHALDPSLAETIGVKTENLLLA  177 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g--------~v~~~~--------~e~~~~~~~~~~~g~~~~~~~~~  177 (271)
                      .|+.-.+-|+|+||||+|||||++.+.+.+.|+.|        .|-||+        .|.+....+++.+.++.+.-+..
T Consensus       608 FGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~  687 (807)
T KOG0066|consen  608 FGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQ  687 (807)
T ss_pred             ccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHH
Confidence            58889999999999999999999999998887644        345564        22333334555566555432110


Q ss_pred             ---------------CCCCHHH--HHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHH
Q 024152          178 ---------------QPDCGEQ--ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH  240 (271)
Q Consensus       178 ---------------~~~~~~e--~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~  240 (271)
                                     ..++.-+  -++++.  +.-..++.+|+|..+.....                    +.+..|..
T Consensus       688 LG~fGL~sHAHTikikdLSGGQKaRValae--Lal~~PDvlILDEPTNNLDI--------------------ESIDALaE  745 (807)
T KOG0066|consen  688 LGTFGLASHAHTIKIKDLSGGQKARVALAE--LALGGPDVLILDEPTNNLDI--------------------ESIDALAE  745 (807)
T ss_pred             hhhhhhhhccceEeeeecCCcchHHHHHHH--HhcCCCCEEEecCCCCCcch--------------------hhHHHHHH
Confidence                           1111111  122222  22357999999987655420                    22333444


Q ss_pred             HHhhcCcEEEEEcccc
Q 024152          241 SLSLSQTILIFINQVF  256 (271)
Q Consensus       241 lake~~~~Vi~~sql~  256 (271)
                      -..+++-.||++||-.
T Consensus       746 AIney~GgVi~VsHDe  761 (807)
T KOG0066|consen  746 AINEYNGGVIMVSHDE  761 (807)
T ss_pred             HHHhccCcEEEEeccc
Confidence            4567888999999865

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.13  E-value=5.7e-06  Score=86.13  Aligned_cols=38  Identities=29%  Similarity=0.554  Sum_probs=34.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      -+++|++++|+|+.|+|||+|+..++++....+|.|.+
T Consensus       543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v  580 (1381)
T KOG0054|consen  543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV  580 (1381)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE
Confidence            57899999999999999999999999999988776443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=7.4e-05  Score=68.81  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=57.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC----H--HHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----P--SLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~----~--~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      +.+++|+|++|+||||++..+|..+...+.+|.+++......    +  .++...+++     +....+..++...+..+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-----v~v~~d~~~L~~aL~~l  315 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-----VIAVRDEAAMTRALTYF  315 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-----EEecCCHHHHHHHHHHH
Confidence            469999999999999999999998887777888887653221    1  122233322     22223556665555554


Q ss_pred             HhcCCccEEEEcchhhh
Q 024152          193 IRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       193 ~~~~~~~lvvID~l~~~  209 (271)
                      ....+.++|+||.....
T Consensus       316 k~~~~~DvVLIDTaGRs  332 (436)
T PRK11889        316 KEEARVDYILIDTAGKN  332 (436)
T ss_pred             HhccCCCEEEEeCcccc
Confidence            43346899999986543

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.11  E-value=0.00012  Score=64.44  Aligned_cols=87  Identities=18%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH---HH---HHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP---SL---AETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~---~~---~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      +|+.++++|+||+||||++..++..+...+..+.+++.......   .+   +...++     .+....+..++...++.
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~-----~~~~~~~~~~l~~~l~~  148 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGF-----EVIAVRDEAAMTRALTY  148 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCc-----eEEecCCHHHHHHHHHH
Confidence            77999999999999999999999988776678888876533211   12   222232     22222455565555555


Q ss_pred             HHhcCCccEEEEcchhhh
Q 024152          192 LIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       192 l~~~~~~~lvvID~l~~~  209 (271)
                      +....+.++++||.....
T Consensus       149 l~~~~~~D~ViIDt~Gr~  166 (270)
T PRK06731        149 FKEEARVDYILIDTAGKN  166 (270)
T ss_pred             HHhcCCCCEEEEECCCCC
Confidence            544457899999986554

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.11  E-value=5.8e-06  Score=70.27  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .+|++++|.|+||+|||||+..|+.
T Consensus        26 ~~~~~~~i~G~NGsGKSTll~~i~~   50 (213)
T cd03279          26 DNNGLFLICGPTGAGKSTILDAITY   50 (213)
T ss_pred             CccCEEEEECCCCCCHHHHHHHhee
Confidence            4588999999999999999999874

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.11  E-value=1.2e-05  Score=71.44  Aligned_cols=75  Identities=15%  Similarity=0.096  Sum_probs=49.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .--+++|+|+||||||||+..+...+.  +.++.|.+++...-.. .......++. ++.......+.+.++..+..+.
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence            446999999999999999999988887  4456777776554322 2223334543 4444455567777766655543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.11  E-value=6.3e-05  Score=66.42  Aligned_cols=89  Identities=19%  Similarity=0.277  Sum_probs=55.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHH-HHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQAL-SLVD  190 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~-~~~~  190 (271)
                      ++.++.++|+||+||||++..+|..+...+.+|.+++......      ..++...++..-  ......+..+.. ..+.
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~dp~~~~~~~l~  148 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGADPAAVAFDAIQ  148 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHHH
Confidence            5689999999999999999999998888777899988664221      123444553211  011112232322 2222


Q ss_pred             HHHhcCCccEEEEcchhhh
Q 024152          191 TLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       191 ~l~~~~~~~lvvID~l~~~  209 (271)
                      . ....+.++++||.....
T Consensus       149 ~-~~~~~~D~ViIDT~G~~  166 (272)
T TIGR00064       149 K-AKARNIDVVLIDTAGRL  166 (272)
T ss_pred             H-HHHCCCCEEEEeCCCCC
Confidence            2 22457899999986544

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.10  E-value=3.3e-05  Score=63.18  Aligned_cols=86  Identities=22%  Similarity=0.244  Sum_probs=52.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH---HH---HHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP---SL---AETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~---~~---~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      ++++.|+||+||||++.+++..+...+.+|++++.+.....   .+   ....++..-  ......+..++.........
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF--EEGEGKDPVSIAKRAIEHAR   79 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEE--ecCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999988887778899887643221   11   122222211  11122344444432222233


Q ss_pred             cCCccEEEEcchhh
Q 024152          195 SGSVDVVVVDSVAA  208 (271)
Q Consensus       195 ~~~~~lvvID~l~~  208 (271)
                      ..+.++++||....
T Consensus        80 ~~~~d~viiDt~g~   93 (173)
T cd03115          80 EENFDVVIVDTAGR   93 (173)
T ss_pred             hCCCCEEEEECccc
Confidence            45788999998554

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.10  E-value=3.9e-05  Score=70.32  Aligned_cols=90  Identities=20%  Similarity=0.265  Sum_probs=60.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--H-H---HHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S---LAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~-~---~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      .+.+|.++.|+||+|+||||++..++..+...+.+|.+++...-..  . .   ++...+++     +....+..++...
T Consensus       202 ~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp-----v~~~~dp~dL~~a  276 (407)
T PRK12726        202 DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE-----LIVATSPAELEEA  276 (407)
T ss_pred             eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC-----EEecCCHHHHHHH
Confidence            3568999999999999999999999988877777888888653322  1 2   22233332     1123456666555


Q ss_pred             HHHHHhcCCccEEEEcchhhh
Q 024152          189 VDTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       189 ~~~l~~~~~~~lvvID~l~~~  209 (271)
                      +..+....+.++|+||.....
T Consensus       277 l~~l~~~~~~D~VLIDTAGr~  297 (407)
T PRK12726        277 VQYMTYVNCVDHILIDTVGRN  297 (407)
T ss_pred             HHHHHhcCCCCEEEEECCCCC
Confidence            555443356899999986543

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.10  E-value=2.3e-05  Score=69.52  Aligned_cols=82  Identities=22%  Similarity=0.336  Sum_probs=54.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-C-CeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-G-GYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~-g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      +.+.+++|+||+|+||||++..++..+... + .+|.+++.+....      ..++..+++++.     ...+..++...
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-----~~~~~~~l~~~  266 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-----VARDPKELRKA  266 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-----ccCCHHHHHHH
Confidence            467899999999999999999999988865 4 5899998764321      123334444331     12344555444


Q ss_pred             HHHHHhcCCccEEEEcch
Q 024152          189 VDTLIRSGSVDVVVVDSV  206 (271)
Q Consensus       189 ~~~l~~~~~~~lvvID~l  206 (271)
                      +..+   .+.++|+||..
T Consensus       267 l~~~---~~~d~vliDt~  281 (282)
T TIGR03499       267 LDRL---RDKDLILIDTA  281 (282)
T ss_pred             HHHc---cCCCEEEEeCC
Confidence            4443   34799999963

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=5e-05  Score=68.33  Aligned_cols=117  Identities=24%  Similarity=0.316  Sum_probs=70.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+.|-.=++++||||+|||-||+.+|....     +.|+--  .......+.+|--+        --+.|++.    +.+
T Consensus       181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----AtFIrv--vgSElVqKYiGEGa--------RlVRelF~----lAr  241 (406)
T COG1222         181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTD-----ATFIRV--VGSELVQKYIGEGA--------RLVRELFE----LAR  241 (406)
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccC-----ceEEEe--ccHHHHHHHhccch--------HHHHHHHH----HHh
Confidence            899999999999999999999998876443     233311  01123333333111        11234444    344


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      ++.++.|+||.+-.+-....-++..|++   ..||-+.+.+.+|.-+=..-|+-||+.+
T Consensus       242 ekaPsIIFiDEIDAIg~kR~d~~t~gDr---EVQRTmleLL~qlDGFD~~~nvKVI~AT  297 (406)
T COG1222         242 EKAPSIIFIDEIDAIGAKRFDSGTSGDR---EVQRTMLELLNQLDGFDPRGNVKVIMAT  297 (406)
T ss_pred             hcCCeEEEEechhhhhcccccCCCCchH---HHHHHHHHHHHhccCCCCCCCeEEEEec
Confidence            5789999999998876533333333332   4455566666666554444566777654

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.07  E-value=4.4e-05  Score=64.54  Aligned_cols=30  Identities=30%  Similarity=0.278  Sum_probs=26.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ....|++++|.||||+|||||++.+++...
T Consensus        25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~   54 (204)
T cd03282          25 TRGSSRFHIITGPNMSGKSTYLKQIALLAI   54 (204)
T ss_pred             eeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456889999999999999999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.07  E-value=2.4e-05  Score=66.77  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++++|.||||+|||||++.++....
T Consensus        31 ~~~~l~Gpn~sGKstllr~i~~~~~   55 (216)
T cd03284          31 QILLITGPNMAGKSTYLRQVALIAL   55 (216)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHH
Confidence            8999999999999999999987543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.06  E-value=8.7e-05  Score=69.58  Aligned_cols=84  Identities=21%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHh-h-cCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQ-R-QGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~-~-~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      .+|.++.|+||+|+||||++..++..+. . .+.+|.+++.+....      ..+++..+++..     ...+..++...
T Consensus       219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-----~~~~~~~l~~~  293 (424)
T PRK05703        219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-----VVYDPKELAKA  293 (424)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-----ccCCHHhHHHH
Confidence            4588999999999999999999999887 3 345899998654211      123344454331     22344555544


Q ss_pred             HHHHHhcCCccEEEEcchhh
Q 024152          189 VDTLIRSGSVDVVVVDSVAA  208 (271)
Q Consensus       189 ~~~l~~~~~~~lvvID~l~~  208 (271)
                      +..+   .+.++|+||....
T Consensus       294 l~~~---~~~DlVlIDt~G~  310 (424)
T PRK05703        294 LEQL---RDCDVILIDTAGR  310 (424)
T ss_pred             HHHh---CCCCEEEEeCCCC
Confidence            4443   3589999997643

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.05  E-value=6.1e-05  Score=66.38  Aligned_cols=116  Identities=18%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCCCCC-H----HHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD-P----SLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~~~~-~----~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      +...+++|.|.+|+||||||..++....  ...+.++|++...... .    .+...++......  ....+.++....+
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l   94 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI--SDPKDIEELQDQL   94 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS--SCCSSHHHHHHHH
T ss_pred             CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            6889999999999999999999997733  3345677876443222 2    3344455443332  2345666777666


Q ss_pred             HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          190 DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       190 ~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      .+.... +..++|+|.+....                   .+......+  .....++.||++|...
T Consensus        95 ~~~L~~-~~~LlVlDdv~~~~-------------------~~~~l~~~~--~~~~~~~kilvTTR~~  139 (287)
T PF00931_consen   95 RELLKD-KRCLLVLDDVWDEE-------------------DLEELREPL--PSFSSGSKILVTTRDR  139 (287)
T ss_dssp             HHHHCC-TSEEEEEEEE-SHH-------------------HH---------HCHHSS-EEEEEESCG
T ss_pred             hhhhcc-ccceeeeeeecccc-------------------ccccccccc--cccccccccccccccc
Confidence            666543 37899999864332                   111111122  1234688999998754

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.04  E-value=1.7e-05  Score=67.91  Aligned_cols=37  Identities=27%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEH  157 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~  157 (271)
                      +++|+|+||||||||+..++..+.+  .++.+.+++...
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~   39 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDG   39 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCc
Confidence            5899999999999999999998875  455677776543

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.04  E-value=3.6e-05  Score=67.29  Aligned_cols=94  Identities=19%  Similarity=0.244  Sum_probs=50.9

Q ss_pred             CCCCCc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE-cCCCCCC---HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGR-VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI-DAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~-li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~-~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      +++++. +++|.|+||+||||+++.++....+..-.+.++ .......   ..++..+|+..+....  ......+...+
T Consensus        38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~--~~~~~~l~~~l  115 (269)
T TIGR03015        38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDK--AALLRELEDFL  115 (269)
T ss_pred             HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHHH
Confidence            454544 899999999999999999987766432222222 2211111   1344555654332100  00011222333


Q ss_pred             HHHHhcCCccEEEEcchhhhc
Q 024152          190 DTLIRSGSVDVVVVDSVAALV  210 (271)
Q Consensus       190 ~~l~~~~~~~lvvID~l~~~~  210 (271)
                      ..........+++||..+.+.
T Consensus       116 ~~~~~~~~~~vliiDe~~~l~  136 (269)
T TIGR03015       116 IEQFAAGKRALLVVDEAQNLT  136 (269)
T ss_pred             HHHHhCCCCeEEEEECcccCC
Confidence            333335566789999987664

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.04  E-value=2.3e-05  Score=74.37  Aligned_cols=45  Identities=27%  Similarity=0.358  Sum_probs=35.5

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY  149 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~  149 (271)
                      |.--++.+.-  -++.|+-..|+||+|||||+|++.+++...-.+|.
T Consensus       447 g~~lie~Ls~--~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~  491 (659)
T KOG0060|consen  447 GDLLIENLSL--EVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGK  491 (659)
T ss_pred             Cceeeeeeee--EecCCCeEEEECCCCCchhHHHHHHhcccccCCCe
Confidence            4333444443  78899999999999999999999999998855544

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.04  E-value=8.9e-06  Score=66.79  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=35.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      ++|+++.|.|.||+||||++..++..+...++.+.+++.+
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D   41 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD   41 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence            6899999999999999999999999998777778888754

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.04  E-value=2.3e-05  Score=67.30  Aligned_cols=74  Identities=20%  Similarity=0.212  Sum_probs=47.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE-EcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF-IDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~-~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      +..+++|.|+||+|||||+..++....+.++.+.. ++...... .......++..+ .......+.+.+...+..+
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~-~~~~~~~d~~~~~~~l~~l  107 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPR-KGAPETFDVAGLAALLRRL  107 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccc-cCCCCCCCHHHHHHHHHHH
Confidence            67899999999999999999999999988886544 54332221 222333444432 2223345566665554443

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.04  E-value=1.1e-05  Score=67.50  Aligned_cols=38  Identities=29%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      .+|.|+-+.++|.||+|||||++.+++..-..++.|.+
T Consensus        36 dlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~V   73 (291)
T KOG2355|consen   36 DLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQV   73 (291)
T ss_pred             ccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEE
Confidence            57899999999999999999999998866554554433

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.03  E-value=5e-05  Score=69.67  Aligned_cols=30  Identities=30%  Similarity=0.511  Sum_probs=27.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      -+.+|++++|.|.+||||||++.+|++...
T Consensus       405 ~ikpGdvvaVvGqSGaGKttllRmi~G~~~  434 (593)
T COG2401         405 EIKPGDVVAVVGQSGAGKTTLLRMILGAQK  434 (593)
T ss_pred             EecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence            467999999999999999999999999876

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.03  E-value=5.2e-05  Score=63.65  Aligned_cols=40  Identities=28%  Similarity=0.311  Sum_probs=34.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      ++|.++.|.|.||+|||||+..++..+...+..+++++.+
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d   61 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD   61 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence            6899999999999999999999999887766666777654

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.02  E-value=4.4e-06  Score=68.19  Aligned_cols=57  Identities=23%  Similarity=0.356  Sum_probs=37.7

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC--CCCCCHHHHHHcCCcC
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHALDPSLAETIGVKT  171 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~--e~~~~~~~~~~~g~~~  171 (271)
                      |-+..|+++-++||||+|||||.-.+++... .+|.|.|-+.  +.....++++.-.|..
T Consensus        20 ~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLs   78 (248)
T COG4138          20 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLS   78 (248)
T ss_pred             cccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHh
Confidence            4677999999999999999999888887654 4455444332  2222234555444443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.02  E-value=3e-05  Score=62.40  Aligned_cols=29  Identities=31%  Similarity=0.397  Sum_probs=24.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGG  148 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g  148 (271)
                      --+.|.|+||+||||+++-++..+...+-
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~   34 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREKGY   34 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence            35789999999999999999988886643

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.02  E-value=3.2e-05  Score=66.29  Aligned_cols=30  Identities=27%  Similarity=0.290  Sum_probs=25.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +.+++++++|.||||+||||+++.++....
T Consensus        26 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~   55 (222)
T cd03285          26 TRGKSRFLIITGPNMGGKSTYIRQIGVIVL   55 (222)
T ss_pred             eecCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence            455899999999999999999999886543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.02  E-value=3.3e-05  Score=64.17  Aligned_cols=24  Identities=38%  Similarity=0.360  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +++|.|+||+|||||++.++....
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~   24 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVI   24 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999995443

>PRK08181 transposase; Validated

Probab=98.01  E-value=3e-05  Score=68.27  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=65.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG  196 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~  196 (271)
                      ..++-+.|+||||+|||.|+..++..+...+..|+|++......     .+....      ...+..+.   +..+   .
T Consensus       104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~-----~l~~a~------~~~~~~~~---l~~l---~  166 (269)
T PRK08181        104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ-----KLQVAR------RELQLESA---IAKL---D  166 (269)
T ss_pred             hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH-----HHHHHH------hCCcHHHH---HHHH---h
Confidence            37788999999999999999999998887777888887432221     111000      11122222   2222   3


Q ss_pred             CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          197 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       197 ~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      .+++++||.+.....         ..   ..+..+-+.+..    ..+ +.++|++|++....
T Consensus       167 ~~dLLIIDDlg~~~~---------~~---~~~~~Lf~lin~----R~~-~~s~IiTSN~~~~~  212 (269)
T PRK08181        167 KFDLLILDDLAYVTK---------DQ---AETSVLFELISA----RYE-RRSILITANQPFGE  212 (269)
T ss_pred             cCCEEEEeccccccC---------CH---HHHHHHHHHHHH----HHh-CCCEEEEcCCCHHH
Confidence            689999999876542         10   111222222222    123 36899998887443

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.01  E-value=7e-05  Score=64.69  Aligned_cols=39  Identities=15%  Similarity=0.323  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      .+..+.|.||+|+|||+|+..++..+...+..+.|++.+
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~   82 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD   82 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence            345789999999999999999998877767788888653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
2rec_A	353	Reca Hexamer Model, Electron Microscopy Length = 35		2e-58
1n03_A	352	Model For Active Reca Filament Length = 352		2e-58
3cmu_A	2050	Mechanism Of Homologous Recombination From The Reca		2e-58
3cmt_A	1706	Mechanism Of Homologous Recombination From The Reca		2e-58
3cmv_A	1357	Mechanism Of Homologous Recombination From The Reca		2e-58
1u94_A	356	Crystal Structure Of E. Coli Reca In A Compressed H		3e-58
1g18_A	350	Reca-Adp-Alf4 Complex Length = 350		4e-58
1ubc_A	349	Structure Of Reca Protein Length = 349		4e-58
2zr0_A	349	Msreca-Q196e Mutant Length = 349		1e-57
2zrc_A	349	Msreca Q196n Form Iv Length = 349		2e-57
2zrh_A	349	Msreca Q196a Form Iv Length = 349		2e-57
3hr8_A	356	Crystal Structure Of Thermotoga Maritima Reca Lengt		3e-56
1xp8_A	366	"deinococcus Radiodurans Reca In Complex With Atp-G		9e-56
2cvf_A	220	Crystal Structure Of The Radb Recombinase Length =		5e-06
2w0m_A	235	Crystal Structure Of Sso2452 From Sulfolobus Solfat		2e-05
3io5_A	333	Crystal Structure Of A Dimeric Form Of The Uvsx Rec		7e-05

>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy Length = 353

Iteration: 1
 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 136/197 (69%), Gaps = 4/197 (2%)
Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           +EN  K   AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP 
Sbjct: 4   DENKQK---ALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPM 59
Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +Q
Sbjct: 60  GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 119
Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + D L RSG            L PK E++GE+GD+HM + AR+MSQA+RKL
Sbjct: 120 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179
Query: 239 SHSLSLSQTILIFINQV 255
           + +L  S T+LIFINQ+
Sbjct: 180 AGNLKQSNTLLIFINQI 196

>pdb|1N03|A Chain A, Model For Active Reca Filament Length = 352

Iteration: 1
 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 136/197 (69%), Gaps = 4/197 (2%)
Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           +EN  K   AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP 
Sbjct: 3   DENKQK---ALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPM 58
Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +Q
Sbjct: 59  GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 118
Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + D L RSG            L PK E++GE+GD+HM + AR+MSQA+RKL
Sbjct: 119 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 178
Query: 239 SHSLSLSQTILIFINQV 255
           + +L  S T+LIFINQ+
Sbjct: 179 AGNLKQSNTLLIFINQI 195

>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 2050

Iteration: 1
 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 136/197 (69%), Gaps = 4/197 (2%)
Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           +EN  K   AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP 
Sbjct: 327 DENKQK---ALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPM 382
Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +Q
Sbjct: 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 442
Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + D L RSG            L PK E++GE+GD+HM + AR+MSQA+RKL
Sbjct: 443 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 502
Query: 239 SHSLSLSQTILIFINQV 255
           + +L  S T+LIFINQ+
Sbjct: 503 AGNLKQSNTLLIFINQI 519

>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 1706

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 136/197 (69%), Gaps = 4/197 (2%)
Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           +EN  K   AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP 
Sbjct: 327 DENKQK---ALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPM 382
Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +Q
Sbjct: 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 442
Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + D L RSG            L PK E++GE+GD+HM + AR+MSQA+RKL
Sbjct: 443 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 502
Query: 239 SHSLSLSQTILIFINQV 255
           + +L  S T+LIFINQ+
Sbjct: 503 AGNLKQSNTLLIFINQI 519

>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 1357

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 136/197 (69%), Gaps = 4/197 (2%)
Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           +EN  K   AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP 
Sbjct: 327 DENKQK---ALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPM 382
Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +Q
Sbjct: 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 442
Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + D L RSG            L PK E++GE+GD+HM + AR+MSQA+RKL
Sbjct: 443 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 502
Query: 239 SHSLSLSQTILIFINQV 255
           + +L  S T+LIFINQ+
Sbjct: 503 AGNLKQSNTLLIFINQI 519

>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical Filament Form 2 Length = 356

Iteration: 1
 Score =  221 bits (564), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 136/197 (69%), Gaps = 4/197 (2%)
Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           +EN  K   AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP 
Sbjct: 7   DENKQK---ALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPM 62
Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +Q
Sbjct: 63  GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 122
Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + D L RSG            L PK E++GE+GD+HM + AR+MSQA+RKL
Sbjct: 123 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 182
Query: 239 SHSLSLSQTILIFINQV 255
           + +L  S T+LIFINQ+
Sbjct: 183 AGNLKQSNTLLIFINQI 199

>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex Length = 350

Iteration: 1
 Score =  221 bits (562), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/191 (57%), Positives = 141/191 (73%), Gaps = 1/191 (0%)
Query: 65  KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
           ++ AL+ A+ QI  S+GKGS+M LG     + + V+ TGS ALD+ALG GGLP+GRV+EI
Sbjct: 7   REKALELAVAQIEKSYGKGSVMRLGDEAR-QPISVIPTGSIALDVALGIGGLPRGRVIEI 65
Query: 125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
           YGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T++LL++QPD GEQ
Sbjct: 66  YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125
Query: 185 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
           AL + D LIRSG            LVP+ EL+GEMGD+H+ +QARLMSQALRK++ +L+ 
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185
Query: 245 SQTILIFINQV 255
           S T  IFINQ+
Sbjct: 186 SGTTAIFINQL 196

>pdb|1UBC|A Chain A, Structure Of Reca Protein Length = 349

Iteration: 1
 Score =  221 bits (562), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 142/191 (74%), Gaps = 1/191 (0%)
Query: 65  KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
           ++ AL+ A+ QI  +FGKGS+M LG  V  + + V+ TGS +LD+ALG GGLP+GRV+EI
Sbjct: 8   REKALELAMAQIDKNFGKGSVMRLGEEVR-QPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
           YGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T++LL++QPD GEQ
Sbjct: 67  YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 185 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
           AL + D L+RSG            LVP+ E++GEMGD+H+ +QARLMSQALRK++ +L+ 
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 245 SQTILIFINQV 255
           S T  IFINQ+
Sbjct: 187 SGTTAIFINQL 197

>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant Length = 349

Iteration: 1
 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 142/191 (74%), Gaps = 1/191 (0%)
Query: 65  KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
           ++ AL+ A+ QI  +FGKGS+M LG  V  + + V+ TGS +LD+ALG GGLP+GRV+EI
Sbjct: 8   REKALELAMAQIDKNFGKGSVMRLGEEVR-QPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
           YGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T++LL++QPD GEQ
Sbjct: 67  YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 185 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
           AL + D L+RSG            LVP+ E++GEMGD+H+ +QARLMSQALRK++ +L+ 
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 245 SQTILIFINQV 255
           S T  IFIN++
Sbjct: 187 SGTTAIFINEL 197

>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv Length = 349

Iteration: 1
 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 141/191 (73%), Gaps = 1/191 (0%)
Query: 65  KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
           ++ AL+ A+ QI  +FGKGS+M LG  V  + + V+ TGS +LD+ALG GGLP+GRV+EI
Sbjct: 8   REKALELAMAQIDKNFGKGSVMRLGEEVR-QPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
           YGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T++LL++QPD GEQ
Sbjct: 67  YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 185 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
           AL + D L+RSG            LVP+ E++GEMGD+H+ +QARLMSQALRK++ +L+ 
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 245 SQTILIFINQV 255
           S T  IFIN +
Sbjct: 187 SGTTAIFINNL 197

>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv Length = 349

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 140/189 (74%), Gaps = 1/189 (0%)
Query: 65  KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
           ++ AL+ A+ QI  +FGKGS+M LG  V  + + V+ TGS +LD+ALG GGLP+GRV+EI
Sbjct: 8   REKALELAMAQIDKNFGKGSVMRLGEEVR-QPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
           YGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T++LL++QPD GEQ
Sbjct: 67  YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 185 ALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
           AL + D L+RSG            LVP+ E++GEMGD+H+ +QARLMSQALRK++ +L+ 
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 245 SQTILIFIN 253
           S T  IFIN
Sbjct: 187 SGTTAIFIN 195

>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca Length = 356

Iteration: 1
 Score =  214 bits (546), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 138/193 (71%)
Query: 63  SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 122
            +K   L++AL +I  +FGKGSIM LG     + V V+ TGS A+DIA G GG P+GR+V
Sbjct: 5   KQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIV 64
Query: 123 EIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 182
           EI+G E+SGKTTLALH IAEAQ+ GG   FIDAEHALDP  A+ +GV  ++LL++QPD G
Sbjct: 65  EIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124
Query: 183 EQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 242
           EQAL +VD L+RSG            LVP+ E++G MGD  + +QARLMSQALRK++ S+
Sbjct: 125 EQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSV 184
Query: 243 SLSQTILIFINQV 255
           + S+ ++IF NQ+
Sbjct: 185 NKSKAVVIFTNQI 197

>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S" Length = 366

Iteration: 1
 Score =  213 bits (542), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 140/195 (71%), Gaps = 1/195 (0%)
Query: 61  NMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGR 120
           +  ++  A++ A+ QI  +FGKGSIM LG + +   V VVSTGS +LD+ALG GG+P+GR
Sbjct: 17  DAKERSKAIETAMSQIEKAFGKGSIMKLG-AESKLDVQVVSTGSLSLDLALGVGGIPRGR 75
Query: 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD 180
           + EIYGPE+ GKTTLAL ++A+AQ+ GG C FIDAEHALDP  A  +GV T+ LL++QPD
Sbjct: 76  ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPD 135
Query: 181 CGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240
            GEQAL +++ L+RSG            L P+ E++G+MGD+   +QARLMSQALRKL+ 
Sbjct: 136 NGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTA 195
Query: 241 SLSLSQTILIFINQV 255
            LS + T  IFINQV
Sbjct: 196 ILSKTGTAAIFINQV 210

>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase Length = 220

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 99  VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158
           ++STG+ +LD  LG GG   G + ++YGP ASGKTTLAL         G    ++D E  
Sbjct: 1   MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQT---GLLSGKKVAYVDTEGG 56
Query: 159 LDPS----LAETIGVKTEN-----LLLAQPDCGEQ 184
             P     +AET G+  E      +L    D  EQ
Sbjct: 57  FSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQ 91

>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus P2 Length = 235

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156
           V  +STG    D  L  GG+P+G  + + G   +GKT  +LH IA+  R G  C+++  E
Sbjct: 2   VSRLSTGILDFD-KLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60
Query: 157 HALDPSL--AETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195
            + D  +  A+      E  +       E+ L ++D L++ 
Sbjct: 61  ESRDSIIRQAKQFNWDFEEYI-------EKKLIIIDALMKE 94

>pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx Recombinase Core Domain From Enterobacteria Phage T4 Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 11/171 (6%)
Query: 96  HVPVVSTGSFALDIALG---TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYC 150
           H+ VV T    ++IAL    TGG+  G ++ + GP  S K+   L +++   RQ     C
Sbjct: 3   HMDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVC 61
Query: 151 VFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ-ALSLVDTL--IRSGXXXXXXXXXXX 207
           +F D+E  + P+   ++GV  E ++       EQ  + +V+ L  I  G           
Sbjct: 62  LFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLG 121
Query: 208 XLVPKGELDGEMGDAHMA--MQARLMSQALRKLSHSLSLSQTILIFINQVF 256
            L  K E +  + +  ++   +A+ M    R ++   S      I IN  +
Sbjct: 122 NLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	1e-118
1xp8_A	366	RECA protein, recombinase A; recombination, radior	1e-117
1u94_A	356	RECA protein, recombinase A; homologous recombinat	1e-116
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	1e-116
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-107
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-106
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-106
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-106
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	1e-105
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	2e-94
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	1e-106
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	1e-106
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	1e-106
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	1e-106
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	2e-94
3io5_A	333	Recombination and repair protein; storage dimer, i	4e-81
2z43_A	324	DNA repair and recombination protein RADA; archaea	4e-50
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	1e-47
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	1e-40
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	2e-40
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	7e-37
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	2e-35
2cvh_A	220	DNA repair and recombination protein RADB; filamen	1e-15
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	4e-13
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	9e-11
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	2e-11
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	2e-11
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1oft_A	161	SULA, hypothetical protein PA3008; bacterial cell	6e-05
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	3e-04

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Length = 356

 Score =  341 bits (877), Expect = e-118
 Identities = 113/193 (58%), Positives = 149/193 (77%)

Query: 63  SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 122
            +K   L++AL +I  +FGKGSIM LG     + V V+ TGS A+DIA G GG P+GR+V
Sbjct: 5   KQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIV 64

Query: 123 EIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 182
           EI+G E+SGKTTLALH IAEAQ+ GG   FIDAEHALDP  A+ +GV  ++LL++QPD G
Sbjct: 65  EIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124

Query: 183 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 242
           EQAL +VD L+RSG VD++VVDSVAALVP+ E++G MGD  + +QARLMSQALRK++ S+
Sbjct: 125 EQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSV 184

Query: 243 SLSQTILIFINQV 255
           + S+ ++IF NQ+
Sbjct: 185 NKSKAVVIFTNQI 197

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Length = 366

 Score =  340 bits (873), Expect = e-117
 Identities = 121/213 (56%), Positives = 157/213 (73%), Gaps = 4/213 (1%)

Query: 43  SSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVST 102
           S  SK  +K   + +  +  SK   A++ A+ QI  +FGKGSIM LG       V VVST
Sbjct: 2   SHMSKDATKEISAPTDAKERSK---AIETAMSQIEKAFGKGSIMKLGAESKLD-VQVVST 57

Query: 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS 162
           GS +LD+ALG GG+P+GR+ EIYGPE+ GKTTLAL ++A+AQ+ GG C FIDAEHALDP 
Sbjct: 58  GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV 117

Query: 163 LAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 222
            A  +GV T+ LL++QPD GEQAL +++ L+RSG++DVVVVDSVAAL P+ E++G+MGD+
Sbjct: 118 YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDS 177

Query: 223 HMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
              +QARLMSQALRKL+  LS + T  IFINQV
Sbjct: 178 LPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Length = 356

 Score =  337 bits (867), Expect = e-116
 Identities = 122/193 (63%), Positives = 145/193 (75%), Gaps = 1/193 (0%)

Query: 63  SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 122
             K  AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP GR+V
Sbjct: 8   ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRIV 66

Query: 123 EIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 182
           EIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +QPD G
Sbjct: 67  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 126

Query: 183 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 242
           EQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +L
Sbjct: 127 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 186

Query: 243 SLSQTILIFINQV 255
             S T+LIFINQ+
Sbjct: 187 KQSNTLLIFINQI 199

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Length = 349

 Score =  337 bits (866), Expect = e-116
 Identities = 113/196 (57%), Positives = 154/196 (78%), Gaps = 1/196 (0%)

Query: 60  ENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKG 119
           +    ++ AL+ A+ QI  +FGKGS+M LG  V    + V+ TGS +LD+ALG GGLP+G
Sbjct: 3   QQAPDREKALELAMAQIDKNFGKGSVMRLGEEVRQP-ISVIPTGSISLDVALGIGGLPRG 61

Query: 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQP 179
           RV+EIYGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T++LL++QP
Sbjct: 62  RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQP 121

Query: 180 DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLS 239
           D GEQAL + D L+RSG++D++V+DSVAALVP+ E++GEMGD+H+ +QARLMSQALRK++
Sbjct: 122 DTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMT 181

Query: 240 HSLSLSQTILIFINQV 255
            +L+ S T  IFIN++
Sbjct: 182 GALNNSGTTAIFINEL 197

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  339 bits (872), Expect = e-107
 Identities = 124/215 (57%), Positives = 149/215 (69%), Gaps = 1/215 (0%)

Query: 41   NFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVV 100
              +  S   +    S         K  AL  AL QI   FGKGSIM LG   +   V  +
Sbjct: 1350 LSNPNSTTGATGAMSGRMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETI 1408

Query: 101  STGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160
            STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALD
Sbjct: 1409 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 1468

Query: 161  PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMG 220
            P  A  +GV  +NLL +QPD GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+G
Sbjct: 1469 PIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 1528

Query: 221  DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
            D+HM + AR+MSQA+RKL+ +L  S T+LIFINQ+
Sbjct: 1529 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  337 bits (867), Expect = e-106
 Identities = 124/214 (57%), Positives = 150/214 (70%), Gaps = 1/214 (0%)

Query: 42  FSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVS 101
            S+     S    + +       K  AL  AL QI   FGKGSIM LG   +   V  +S
Sbjct: 656 NSTTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETIS 714

Query: 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP 161
           TGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP
Sbjct: 715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 774

Query: 162 SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGD 221
             A  +GV  +NLL +QPD GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD
Sbjct: 775 IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGD 834

Query: 222 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
           +HM + AR+MSQA+RKL+ +L  S T+LIFINQ+
Sbjct: 835 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  337 bits (867), Expect = e-106
 Identities = 125/209 (59%), Positives = 149/209 (71%), Gaps = 1/209 (0%)

Query: 47  KRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFA 106
              S + GS         K  AL  AL QI   FGKGSIM LG   +   V  +STGS +
Sbjct: 312 STGSGTTGSTGSMAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLS 370

Query: 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET 166
           LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  
Sbjct: 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK 430

Query: 167 IGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 226
           +GV  +NLL +QPD GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM +
Sbjct: 431 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL 490

Query: 227 QARLMSQALRKLSHSLSLSQTILIFINQV 255
            AR+MSQA+RKL+ +L  S T+LIFINQ+
Sbjct: 491 AARMMSQAMRKLAGNLKQSNTLLIFINQI 519

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  336 bits (864), Expect = e-106
 Identities = 125/216 (57%), Positives = 151/216 (69%), Gaps = 1/216 (0%)

Query: 40   CNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPV 99
             N +S +        + S       K  AL  AL QI   FGKGSIM LG   +   V  
Sbjct: 1697 SNPNSTTGSTGSGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VET 1755

Query: 100  VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159
            +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHAL
Sbjct: 1756 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1815

Query: 160  DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEM 219
            DP  A  +GV  +NLL +QPD GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+
Sbjct: 1816 DPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 1875

Query: 220  GDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
            GD+HM + AR+MSQA+RKL+ +L  S T+LIFINQ+
Sbjct: 1876 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1911

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  335 bits (861), Expect = e-105
 Identities = 124/211 (58%), Positives = 149/211 (70%), Gaps = 1/211 (0%)

Query: 45   KSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGS 104
                 S +    +G      K  AL  AL QI   FGKGSIM LG   +   V  +STGS
Sbjct: 1008 TGSTGSMASTGSTGSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGS 1066

Query: 105  FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA 164
             +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A
Sbjct: 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 1126

Query: 165  ETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHM 224
              +GV  +NLL +QPD GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM
Sbjct: 1127 RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 1186

Query: 225  AMQARLMSQALRKLSHSLSLSQTILIFINQV 255
             + AR+MSQA+RKL+ +L  S T+LIFINQ+
Sbjct: 1187 GLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1217

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Length = 2050

 Score =  303 bits (777), Expect = 2e-94
 Identities = 106/159 (66%), Positives = 128/159 (80%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156
           V  +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAE
Sbjct: 12  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71

Query: 157 HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELD 216
           HALDP  A  +GV  +NLL +QPD GEQAL + D L RSG+VDV+VVDSVAAL PK E++
Sbjct: 72  HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131

Query: 217 GEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
           GE+GD+HM + AR+MSQA+RKL+ +L  S T+LIFINQ+
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 170

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  338 bits (868), Expect = e-106
 Identities = 122/197 (61%), Positives = 145/197 (73%), Gaps = 1/197 (0%)

Query: 59   EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
                  K  AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP 
Sbjct: 1372 SAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPM 1430

Query: 119  GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
            GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +Q
Sbjct: 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 1490

Query: 179  PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
            PD GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL
Sbjct: 1491 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 1550

Query: 239  SHSLSLSQTILIFINQV 255
            + +L  S T+LIFINQ+
Sbjct: 1551 AGNLKQSNTLLIFINQI 1567

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  338 bits (868), Expect = e-106
 Identities = 125/209 (59%), Positives = 149/209 (71%), Gaps = 1/209 (0%)

Query: 47  KRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFA 106
              S + GS         K  AL  AL QI   FGKGSIM LG   +   V  +STGS +
Sbjct: 312 STGSGTTGSTGSMAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLS 370

Query: 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET 166
           LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  
Sbjct: 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK 430

Query: 167 IGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 226
           +GV  +NLL +QPD GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM +
Sbjct: 431 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL 490

Query: 227 QARLMSQALRKLSHSLSLSQTILIFINQV 255
            AR+MSQA+RKL+ +L  S T+LIFINQ+
Sbjct: 491 AARMMSQAMRKLAGNLKQSNTLLIFINQI 519

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  337 bits (867), Expect = e-106
 Identities = 126/222 (56%), Positives = 153/222 (68%), Gaps = 1/222 (0%)

Query: 34   ETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVT 93
            E      N ++ S   +    + S       K  AL  AL QI   FGKGSIM LG   +
Sbjct: 998  ELLLSNPNSTTGSTGSASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRS 1057

Query: 94   PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153
               V  +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G  C FI
Sbjct: 1058 MD-VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 1116

Query: 154  DAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKG 213
            DAEHALDP  A  +GV  +NLL +QPD GEQAL + D L RSG+VDV+VVDSVAAL PK 
Sbjct: 1117 DAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176

Query: 214  ELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
            E++GE+GD+HM + AR+MSQA+RKL+ +L  S T+LIFINQ+
Sbjct: 1177 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1218

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  337 bits (866), Expect = e-106
 Identities = 122/197 (61%), Positives = 145/197 (73%), Gaps = 1/197 (0%)

Query: 59  EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
                 K  AL  AL QI   FGKGSIM LG   +   V  +STGS +LDIALG GGLP 
Sbjct: 673 SAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPM 731

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GR+VEIYGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +Q
Sbjct: 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 791

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL
Sbjct: 792 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 851

Query: 239 SHSLSLSQTILIFINQV 255
           + +L  S T+LIFINQ+
Sbjct: 852 AGNLKQSNTLLIFINQI 868

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706

 Score =  303 bits (777), Expect = 2e-94
 Identities = 106/168 (63%), Positives = 129/168 (76%)

Query: 88  LGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 147
           +        V  +STGS +LDIALG GGLP GR+VEIYGPE+SGKTTL L VIA AQR+G
Sbjct: 3   MHGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 62

Query: 148 GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVA 207
             C FIDAEHALDP  A  +GV  +NLL +QPD GEQAL + D L RSG+VDV+VVDSVA
Sbjct: 63  KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 122

Query: 208 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
           AL PK E++GE+GD+HM + AR+MSQA+RKL+ +L  S T+LIFINQ+
Sbjct: 123 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 170

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Length = 333

 Score =  246 bits (630), Expect = 4e-81
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 11/170 (6%)

Query: 96  HVPVVSTGSFALDIALGT---GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYC 150
           H+ VV T    ++IAL     GG+  G ++ + GP  S K+   L +++   RQ     C
Sbjct: 3   HMDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVC 61

Query: 151 VFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ-ALSLVDTL--IRSGSVDVVVVDSVA 207
           +F D+E  + P+   ++GV  E ++       EQ  + +V+ L  I  G   VV +DS+ 
Sbjct: 62  LFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLG 121

Query: 208 ALVPKGELDGEMGDAHMA--MQARLMSQALRKLSHSLSLSQTILIFINQV 255
            L  K E +  + +  ++   +A+ M    R ++   S      I IN  
Sbjct: 122 NLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Length = 324

 Score =  166 bits (423), Expect = 4e-50
 Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 27/214 (12%)

Query: 62  MSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRV 121
           +S     +++A D +   F     +   R     +V  +STGS ALD  L  GG+    +
Sbjct: 55  LSTAQKIIKEARDALDIRFKTALEVKKERM----NVKKISTGSQALDGLLA-GGIETRTM 109

Query: 122 VEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAETIGVKT 171
            E +G   SGKT L   +    Q         G  V+ID E         ++A+ +G+  
Sbjct: 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI 169

Query: 172 E----NLLLAQPDCGEQALSLVDTL----IRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223
           +    N+   +    +  +++VD L     +  S+ ++VVDSV +   + E  G     +
Sbjct: 170 DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF-RAEYPGRE---N 225

Query: 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
           +A++ + +++ L +L+    +    +I  NQV +
Sbjct: 226 LAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Length = 343

 Score =  160 bits (407), Expect = 1e-47
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 28/227 (12%)

Query: 50  SKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDI 109
           ++    +    + +K D   + A   I   F         R    + V  ++TGS   D 
Sbjct: 58  TRRALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDK 113

Query: 110 ALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-- 161
            LG GG+    + E +G   +GKT L+  +   AQ        GG  +FID E+   P  
Sbjct: 114 LLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR 172

Query: 162 --SLAETIGVKTE----NLLLAQPDCGEQALSLVDTLI-----RSGSVDVVVVDSVAALV 210
              +A+   V  +    N+L A+    E  + L+D +       +G   ++++DS+ AL 
Sbjct: 173 LRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232

Query: 211 PKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
            + +     G   +A + + ++Q L +L          +   NQ+ +
Sbjct: 233 -RVDFS---GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Length = 349

 Score =  142 bits (360), Expect = 1e-40
 Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 37/228 (16%)

Query: 62  MSKKDLA---------LQQALDQITSSFGKGSIMWLGRSVTPRH-VPVVSTGSFALDIAL 111
            S  +L            + +     +   G+ M     +  R  +  +STGS +LD  L
Sbjct: 65  ASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRATIGRISTGSKSLDKLL 124

Query: 112 GTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS--- 162
           G GG+    + E++G   SGKT LA  +    Q         G  ++ID E+   P    
Sbjct: 125 G-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR 183

Query: 163 -LAETIGVKTENLL-----LAQPDCGEQALSL-------VDTLIRSGSVDVVVVDSVAAL 209
            +A+  G+  + +L         +   Q L +        + L     V +++VDS+ + 
Sbjct: 184 EIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243

Query: 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
                    +G   +A + + +++ L  L    +L    +   NQV +
Sbjct: 244 FRSEY----IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Length = 400

 Score =  143 bits (361), Expect = 2e-40
 Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 26/212 (12%)

Query: 63  SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 122
           +K D  L +A   +   F   +   + R      +  ++TGS  LD  LG GG+  G + 
Sbjct: 127 AKADKLLNEAARLVPMGFVTAADFHMRR----SELICLTTGSKNLDTLLG-GGVETGSIT 181

Query: 123 EIYGPEASGKTTLALHVIAEAQ------RQGGYCVFIDAEHALDP----SLAETIGVKTE 172
           E++G   +GK+ L   +    Q         G C++ID E    P    S+A+  G+  +
Sbjct: 182 ELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241

Query: 173 NLL-------LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 225
           + L           D   + L     ++      ++VVDSV AL  + +  G    +   
Sbjct: 242 DALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMAL-YRTDFSGRGELSA-- 298

Query: 226 MQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
            +   +++ +R L          ++  NQV +
Sbjct: 299 -RQMHLAKFMRALQRLADQFGVAVVVTNQVVA 329

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Length = 322

 Score =  132 bits (332), Expect = 7e-37
 Identities = 46/223 (20%), Positives = 77/223 (34%), Gaps = 37/223 (16%)

Query: 63  SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVV 122
                 +  A D     F  G  +   RS     V  +ST S  LD  LG GGL    V 
Sbjct: 47  KAAAKMIMGARDLCDLGFKSGIDLLKQRS----TVWKLSTSSSELDSVLG-GGLESQSVT 101

Query: 123 EIYGPEASGKTTLALHVIAEAQR----------------QGGYCVFIDAEHALDPS---- 162
           E  G   SGKT +        Q                      V+ID E    P     
Sbjct: 102 EFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ 161

Query: 163 LAETIGVKTE----NLLLAQPDCGEQALSLVDTL----IRSGSVDVVVVDSVAALVPKGE 214
           +AE  G+  +    N  +A+    +  +   + +        ++ +VV+DS+ +      
Sbjct: 162 MAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEY 221

Query: 215 LDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
                G   +A + + + + +  L+    L   +++  NQV +
Sbjct: 222 ----TGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSA 260

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Length = 243

 Score =  126 bits (317), Expect = 2e-35
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 22/178 (12%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ------RQGGYC 150
           +  ++TGS  LD  L  GG+  G + E++G   +GKT +   +    Q         G  
Sbjct: 3   IIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 61

Query: 151 VFIDAEHALDPS----LAETIGVKTENLL-------LAQPDCGEQALSLVDTLIRSGSVD 199
           ++ID E    P     +AE  G+   ++L           D   Q L     ++      
Sbjct: 62  MYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA 121

Query: 200 VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
           +++VDS  AL  + +     G   ++ +   +++ LR L          ++  NQV +
Sbjct: 122 LLIVDSATALY-RTDYS---GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Length = 220

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 99  VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158
           ++STG+ +LD  LG GG   G + ++YGP ASGKTTLAL         G    ++D E  
Sbjct: 1   MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQT---GLLSGKKVAYVDTEGG 56

Query: 159 LDPS----LAETIGVKTE----NLLLAQPDCGEQALSLVDTL--IRSGSVDVVVVDSVAA 208
             P     +AET G+  E      +L  P   ++   ++ +L      +  +VVVDS+ A
Sbjct: 57  FSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116

Query: 209 L 209
            
Sbjct: 117 H 117

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 13/128 (10%)

Query: 94  PRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153
                 VS+G   LD   G GG  K  ++   G   +GKT L    +  A       +  
Sbjct: 257 RSSNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315

Query: 154 DAEHALD--PSLAETIGVKTENLLL----------AQPDCGEQALSLVDTLIRSGSVDVV 201
             E +       A + G+  E +             +    E  L ++ + I       +
Sbjct: 316 AYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI 375

Query: 202 VVDSVAAL 209
            +DS++AL
Sbjct: 376 AIDSLSAL 383

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525

 Score = 60.7 bits (147), Expect = 9e-11
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 22/141 (15%)

Query: 90  RSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE-AQRQGG 148
            +   + +  + T     D     GGLP GR   + G   +GKT  ++  +         
Sbjct: 11  NNSEHQAIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE 69

Query: 149 YCVFIDAE----------HALDPSLAETIGVKTENLLLAQPDCGEQA----------LSL 188
             VF+  E           +    LA+ +      +L A PD   Q           +  
Sbjct: 70  PGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIER 129

Query: 189 VDTLIRSGSVDVVVVDSVAAL 209
           ++  I+      V +DSV ++
Sbjct: 130 INYAIQKYRARRVSIDSVTSV 150

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Length = 247

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 32/147 (21%)

Query: 92  VTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 151
           +T R    V TG   +D  L  GG+P+  VV + G   +GKT  +   +    + G   +
Sbjct: 1   MTRR----VKTGIPGVDEILH-GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGI 55

Query: 152 FIDAEHALD---------------------------PSLAETIGVKTENLLLAQPDCGEQ 184
           ++  E                                +       + E  ++       +
Sbjct: 56  YVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIRE 115

Query: 185 ALSLVDTLIRSGSVDVVVVDSVAALVP 211
            + ++   IR  +   VVVDSV  L  
Sbjct: 116 FIEVLRQAIRDINAKRVVVDSVTTLYI 142

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Length = 235

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 23/135 (17%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI--- 153
           V  +STG    D  +  GG+P+G  + + G   +GKT  +LH IA+  R G  C+++   
Sbjct: 2   VSRLSTGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60

Query: 154 ---------------DAEHALDPSLA---ETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195
                          D E  ++  L      +  K +   L      E    +++   + 
Sbjct: 61  ESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKL 120

Query: 196 GS-VDVVVVDSVAAL 209
           G     +V+DSV+AL
Sbjct: 121 GYGKARLVIDSVSAL 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 49/314 (15%), Positives = 83/314 (26%), Gaps = 95/314 (30%)

Query: 26  QSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSI 85
           Q F   +L  +     F     +  +   S      + ++D      L      F K ++
Sbjct: 80  QKFVEEVLRINY---KFLMSPIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNV 131

Query: 86  MWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145
                    R  P +      L  AL    L   + V I G   SGKT +AL V    + 
Sbjct: 132 --------SRLQPYL-----KLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 146 QG-----------GYCVFIDAE--------HALDPSLAE------TIGVKTENL------ 174
           Q              C   +          + +DP+          I ++  ++      
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 175 LLAQPDCGEQALSLVD----------------TLI--RSGSV-DVVVVDSVAALVPKGEL 215
           LL      E  L ++                  L+  R   V D +   +   +      
Sbjct: 237 LLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 216 DGEMGDAHMAMQARLMSQALRKLSHS------LSLSQTILI------------FINQVFS 257
                D   ++  + +    + L           LS   +I                V  
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNC 352

Query: 258 INLNKIIDESSGHL 271
             L  II+ S   L
Sbjct: 353 DKLTTIIESSLNVL 366

>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22 Length = 161

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 3/109 (2%)

Query: 98  PVVSTGSFALDIALGTGGLPKGRVVEIYGPEA-SGKTTLALHVIAE--AQRQGGYCVFID 154
                    +D              E+          TL   ++ E   ++   +   I 
Sbjct: 23  NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIA 82

Query: 155 AEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVV 203
              +L        G+  E +LL Q      AL+L    +R G    VV 
Sbjct: 83  PPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 131

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii} Length = 260

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 11/95 (11%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158
           +S     LD  +G        ++       + GK  +  ++++   +           + 
Sbjct: 3   LSWEIEELDREIG-KIKKHSLILIHEEDASSRGK-DILFYILSRKLKSDNLVGMFSISYP 60

Query: 159 LDP--SLAETIGVKTENLLLAQPDCGEQALSLVDT 191
           L     +    GV     L          L++VDT
Sbjct: 61  LQLIIRILSRFGVDVIKYL------ENHRLAIVDT 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	100.0
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	100.0
2r6a_A	454	DNAB helicase, replicative helicase; replication,	100.0
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	99.97
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	99.96
1xp8_A	366	RECA protein, recombinase A; recombination, radior	99.96
1u94_A	356	RECA protein, recombinase A; homologous recombinat	99.96
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	99.96
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.96
3io5_A	333	Recombination and repair protein; storage dimer, i	99.95
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	99.93
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.93
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.91
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	99.91
2z43_A	324	DNA repair and recombination protein RADA; archaea	99.89
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	99.89
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	99.89
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	99.89
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.88
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	99.87
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.87
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.85
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.84
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.83
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.83
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.82
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.82
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.76
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.73
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.59
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.51
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.49
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.49
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.49
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	99.48
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.48
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.48
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.46
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.46
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.44
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.44
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	99.43
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.42
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.42
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.41
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.4
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.39
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.39
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.38
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.38
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.36
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.34
1g6h_A	257	High-affinity branched-chain amino acid transport	99.33
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.32
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.3
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.28
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.27
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.27
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.26
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.25
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.22
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.2
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.19
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.17
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.1
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.08
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.07
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.06
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.06
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.04
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.03
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.98
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.98
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.95
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.93
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.91
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.89
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.89
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.89
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.86
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.86
2og2_A	359	Putative signal recognition particle receptor; nuc	98.86
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.83
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.79
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.76
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.72
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.7
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.7
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.65
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.64
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.63
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.62
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.62
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.6
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.59
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.59
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.58
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.53
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.5
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.49
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.41
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.4
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.39
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.37
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.37
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.36
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.35
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.34
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.34
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.33
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.33
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.29
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.28
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.28
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.27
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.27
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.25
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.25
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.24
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	98.23
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.23
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	98.19
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.16
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.16
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.15
2r5u_A	200	Replicative DNA helicase; DNAB, primase, replicati	98.15
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.14
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.14
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.13
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.13
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.13
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.13
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.12
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.1
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.1
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.1
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.1
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.09
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.07
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	98.06
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	98.06
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.04
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.03
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.03
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.02
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.0
3bos_A	242	Putative DNA replication factor; P-loop containing	98.0
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.99
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.99
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.98
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	97.98
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.97
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	97.97
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.97
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.94
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.94
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.94
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.93
3ice_A	422	Transcription termination factor RHO; transcriptio	97.92
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.92
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.92
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.91
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.9
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.9
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.9
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.89
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.89
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.89
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.89
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.89
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.87
1oft_A	161	SULA, hypothetical protein PA3008; bacterial cell	97.87
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.87
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.86
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.86
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.83
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.83
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.83
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.81
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.8
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.79
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.79
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.79
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.78
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.77
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.76
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.75
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.75
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.73
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.72
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.71
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.67
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.64
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.64
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.63
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.62
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.61
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.61
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.6
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.6
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.59
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.59
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.58
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.57
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.56
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.56
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.55
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.54
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.53
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.52
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.52
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.52
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.51
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.5
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.49
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.49
2xxa_A	433	Signal recognition particle protein; protein trans	97.49
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.49
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.48
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.48
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.48
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.48
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.47
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.46
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.45
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.45
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.45
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.43
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.42
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.41
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.4
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.4
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.38
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.36
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.34
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.34
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.34
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.34
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.34
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.33
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.32
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.31
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.31
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.3
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.28
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.27
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.26
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.26
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.25
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.24
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.24
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.23
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	97.23
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.22
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.22
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.22
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.21
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.2
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.19
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.16
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.15
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.15
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.14
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.14
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.13
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.13
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.12
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	97.12
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.11
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.1
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.1
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.09
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.09
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.09
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.09
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.07
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.07
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.06
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.05
2qgz_A	308	Helicase loader, putative primosome component; str	97.05
3pvs_A	447	Replication-associated recombination protein A; ma	97.05
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.05
3l0o_A	427	Transcription termination factor RHO; helicase, RH	97.04
3co5_A	143	Putative two-component system transcriptional RES	97.01
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.01
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.0
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.0
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.99
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	96.99
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.98
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.98
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.98
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.97
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	96.96
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.95
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.95
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.95
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.95
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.94
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.94
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.93
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.92
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.91
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.9
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.9
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.9
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.9
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.88
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.86
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.85
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.85
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.84
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.84
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.82
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.81
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.81
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	96.81
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.8
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.8
1via_A	175	Shikimate kinase; structural genomics, transferase	96.8
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.8
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.79
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.79
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.77
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.77
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.76
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.75
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.75
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.75
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.72
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.7
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.68
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.68
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.65
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.65
3end_A	307	Light-independent protochlorophyllide reductase ir	96.65
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.64
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.61
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.61
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.59
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.58
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.58
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.57
4a8j_A	361	Elongator complex protein 4; transcription; 2.10A	96.57
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	96.56
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.56
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	96.56
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.55
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.55
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.55
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.54
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.54
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.52
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.52
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.52
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.5
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	96.48
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.48
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.47
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	96.46
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.46
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.45
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.45
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	96.43
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.43
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.43
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.42
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.41
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.41
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.4
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.4
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.38
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.35
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	96.33
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.33
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.33
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	96.33
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.31
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.3
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	96.29
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	96.28
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.26
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.23
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.22
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.2
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.19
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.19
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	96.18
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	96.18
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.17
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.17
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.16
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	96.15
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.14
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	96.11
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	96.11
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	96.1
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	96.1
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.09
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.09
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.09
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.01
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.01
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.99
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	95.98
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.98
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.97
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.96
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.95
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.92
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.91
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	95.89
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.88
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.88
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.82
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.8
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	95.8
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	95.79
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.78
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.74
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.73
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.71
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	95.7
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.69
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.69
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.67
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.67
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	95.66
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.65
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	95.64
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	95.63
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.63
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.61
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	95.6
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	95.58
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.58
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.57
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	95.57
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.57
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.55
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.55
2fna_A	357	Conserved hypothetical protein; structural genomic	95.54
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.54
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.54
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	95.54
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.51
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.5
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.49
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.48
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.48
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.48
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.47
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.46
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.46
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.45
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	95.44
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.44
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.43
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	95.42
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	95.41
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.41
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.41
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	95.39
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.39
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	95.39
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.36
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.36
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.36
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.36
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.35
2jlq_A	451	Serine protease subunit NS3; ribonucleoprotein, nu	95.34
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.34
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	95.33
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.33
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.32
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.31
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.31
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.28
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.27
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.26
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.26
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.25
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.24
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.24
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.24
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.22
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.22
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.21
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.2
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.19
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.19
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.19
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.18
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.17
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.16

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=100.00  E-value=2.1e-34  Score=269.11  Aligned_cols=240  Identities=16%  Similarity=0.164  Sum_probs=187.6

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG   81 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (271)
                      |+||++++++|+|+..      +.++...++.+. .+++++++.+|+.++++++.....++.++.+++.++++.+++.+.
T Consensus       103 a~iv~e~~~~R~li~~------~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (444)
T 2q6t_A          103 ARIVAEKWTLRRLIQA------AGEAMRLAYEEA-GSLDEILDTAGKKILEVALTKTDTEARPMRELVHETFEHIEALFQ  175 (444)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHCSCCCSSEEHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhccc-cCHHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHh
Confidence            7899999999999998      878888777654 489999999999999998876667788999999999999987665


Q ss_pred             CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCC
Q 024152           82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD  160 (271)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~  160 (271)
                      ++.           ..+++|||++.||.+++  ||++|++++|+|+||+|||||+++++.+++.. +.+|+||+.|++..
T Consensus       176 ~~~-----------~~~~i~tG~~~LD~~lg--Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~  242 (444)
T 2q6t_A          176 NKG-----------EVAGVRTGFKELDQLIG--TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAA  242 (444)
T ss_dssp             ------------------CCCSCHHHHHHHC--CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHH
T ss_pred             CCC-----------CCCcccCCCHhhhhhcC--CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence            332           57899999999999997  99999999999999999999999999999874 66899999998865


Q ss_pred             H----HHHHHcCCcCCcc-------------------------eecC--CCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152          161 P----SLAETIGVKTENL-------------------------LLAQ--PDCGEQALSLVDTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       161 ~----~~~~~~g~~~~~~-------------------------~~~~--~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~  209 (271)
                      +    .++...+++.+++                         .+.+  ..+..++++.++++..++++++|||||++.+
T Consensus       243 ~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~  322 (444)
T 2q6t_A          243 QLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLM  322 (444)
T ss_dssp             HHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred             HHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhc
Confidence            4    2344456655432                         2222  2367889999999888889999999999998


Q ss_pred             cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152          210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES  267 (271)
Q Consensus       210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s  267 (271)
                      ....  .   + ....++.+++.++++.|+.+|++++||||+++|++.        .|.+.++++|
T Consensus       323 ~~~~--~---~-~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~S  382 (444)
T 2q6t_A          323 SGPG--S---G-KSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRES  382 (444)
T ss_dssp             BCC-------------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGG
T ss_pred             CCCc--C---C-CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcch
Confidence            6310  0   0 011245678889999999999999999999999874        2567788876

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=100.00  E-value=6.7e-34  Score=265.34  Aligned_cols=232  Identities=16%  Similarity=0.122  Sum_probs=186.8

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCccccccccccccccccc--ccccccccCCCCCCccccCcchHHHHHHHHHHHHHHh
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNF--SSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSS   79 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   79 (271)
                      |+||++++++|+|+..      +.++...++.+   +++++  ++.+|++++++++.....++.++.+++.++++.+++.
T Consensus       103 a~~v~e~~~~R~li~~------~~~i~~~~~~~---~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  173 (444)
T 3bgw_A          103 CQTVSEYFQKRKAISI------AQQIIENVNES---DDGPVKPIQEAVSELMEIEASGTDDDDGSIDEALVTVYEEIESA  173 (444)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHHC---------CCTHHHHHHHHHHHHSCCCSSCCCCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhCC---CHHHHHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHHHh
Confidence            7899999999999998      88888877654   78999  9999999999988776677889999999999999876


Q ss_pred             cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC
Q 024152           80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL  159 (271)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~  159 (271)
                      ++              ..+++|||+++||.+++  ||++|++++|+|+||+|||||+++++.+++..+.+|+||+.|++.
T Consensus       174 ~~--------------~~~gi~TG~~~LD~~lg--Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~  237 (444)
T 3bgw_A          174 DG--------------NITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK  237 (444)
T ss_dssp             CS--------------SCCSBCCSCHHHHHHHS--SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred             hc--------------CCCCcCCCcHHHHhhcC--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence            52              57899999999999997  999999999999999999999999999999887799999999988


Q ss_pred             CHHH----HHHcCCcCC---------------------------cceecC--CCCHHHHHHHHHHHHhcCCcc--EEEEc
Q 024152          160 DPSL----AETIGVKTE---------------------------NLLLAQ--PDCGEQALSLVDTLIRSGSVD--VVVVD  204 (271)
Q Consensus       160 ~~~~----~~~~g~~~~---------------------------~~~~~~--~~~~~e~~~~~~~l~~~~~~~--lvvID  204 (271)
                      .+..    +...+++.+                           .+.+.+  ..+..++++.+++++.+++++  +||||
T Consensus       238 ~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID  317 (444)
T 3bgw_A          238 KENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMID  317 (444)
T ss_dssp             THHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             HHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            7532    333344321                           122222  247889999999988888999  99999


Q ss_pred             chhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152          205 SVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES  267 (271)
Q Consensus       205 ~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s  267 (271)
                      |++.+.....         ..++.+++.++++.|+.+|+++||||++++|++.        .|.+.++++|
T Consensus       318 ~Lq~~~~~~~---------~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~S  379 (444)
T 3bgw_A          318 YLQLLEPAKA---------NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRES  379 (444)
T ss_dssp             CSTTSBCSCS---------SSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSC
T ss_pred             cHHhccCCCC---------CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhh
Confidence            9999863110         0134567889999999999999999999999873        2567777775

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=100.00  E-value=1.8e-33  Score=263.49  Aligned_cols=238  Identities=16%  Similarity=0.192  Sum_probs=192.7

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG   81 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (271)
                      |+||++++++|+|+..      +.++...++... .+++++++.+|+.++++++.....++.++.+++.++++.+++.+.
T Consensus       106 a~iv~e~~~~R~li~~------~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (454)
T 2r6a_A          106 ARIVEEKSVLRRLIRT------ATSIAQDGYTRE-DEIDVLLDEADRKIMEVSQRKHSGAFKNIKDILVQTYDNIEMLHN  178 (454)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHHHSCC-SCSHHHHHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhccc-cCHHHHHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHHh
Confidence            6899999999999998      888888777654 489999999999999998877667888999999999999998776


Q ss_pred             CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCC
Q 024152           82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD  160 (271)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~  160 (271)
                      ++.           .++++|||++.||.+++  ||++|++++|+|+||+|||||+++++.++++. +.+|+||+.|++..
T Consensus       179 ~~~-----------~~~~i~tG~~~LD~~~g--Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~  245 (454)
T 2r6a_A          179 RDG-----------EITGIPTGFTELDRMTS--GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQ  245 (454)
T ss_dssp             CCC-----------CCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHH
T ss_pred             CCC-----------CCCCCCCCcHHHHhhcC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHH
Confidence            433           67899999999999997  99999999999999999999999999999975 55899999998765


Q ss_pred             HHH----HHHcCCcCCc-------------------------ceecC--CCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152          161 PSL----AETIGVKTEN-------------------------LLLAQ--PDCGEQALSLVDTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       161 ~~~----~~~~g~~~~~-------------------------~~~~~--~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~  209 (271)
                      +..    +...++++++                         +.+.+  ..+..+++..++++..+.++++++|||++.+
T Consensus       246 ~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~  325 (454)
T 2r6a_A          246 QLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLI  325 (454)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGS
T ss_pred             HHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHh
Confidence            422    3344554432                         22222  2478899999998887788999999999998


Q ss_pred             cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc--------cchhhhhhh
Q 024152          210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI--------NLNKIIDES  267 (271)
Q Consensus       210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~--------~~~~~l~~s  267 (271)
                      .....        ....+.+++.++++.|+.+|+++++|||+++|++..        +.+.++++|
T Consensus       326 ~~~~~--------~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~S  383 (454)
T 2r6a_A          326 QGSGR--------SKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRES  383 (454)
T ss_dssp             CCSCC------------CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTT
T ss_pred             ccCCC--------CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhcc
Confidence            73110        112345678889999999999999999999998742        667778776

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=99.97  E-value=2.5e-30  Score=234.07  Aligned_cols=196  Identities=58%  Similarity=0.899  Sum_probs=173.8

Q ss_pred             hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152           64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +...+|..++.+|++.|+.+....+++......+..+|||++.||.++++||+++|++++|+||||+|||||+++++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A            6 QKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999998877666542222388999999999999977899999999999999999999999999999


Q ss_pred             hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152          144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH  223 (271)
Q Consensus       144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~  223 (271)
                      ++.++.|+|++.|....+.+++++|++++++.+..+.+.++++..++.+.....+++++||+++.+++..++.+.+|+.+
T Consensus        86 ~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q  165 (356)
T 3hr8_A           86 QKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQ  165 (356)
T ss_dssp             HHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSC
T ss_pred             HhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhH
Confidence            99889999999999999889999999999999999999999999888887778899999999999986567777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      +..+++.+++.++.|+.++++.+++||+++|++.+.
T Consensus       166 ~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~  201 (356)
T 3hr8_A          166 VGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKI  201 (356)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecc
Confidence            778889999999999999999999999999997544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=99.96  E-value=2.4e-29  Score=225.00  Aligned_cols=205  Identities=16%  Similarity=0.149  Sum_probs=144.0

Q ss_pred             cccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCC
Q 024152           38 QICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLP  117 (271)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~  117 (271)
                      +++++++.+|++++++++.....++..+.+++.++++.|++. .  .           ..+++|||++.||.+++  ||+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----------~~~~i~TG~~~LD~~lg--Gl~   66 (315)
T 3bh0_A            3 GPVKPIQEAVSELMEIEASGTDDDDGSIDEALVTVYEEIESA-D--G-----------NITGVPSGFTELDRMTY--GYK   66 (315)
T ss_dssp             -----------------------CCCCCHHHHHHHHHHHHTC-S--S-----------SCCSBCCSCHHHHHHHS--SBC
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHhc-c--C-----------CCCCccCChHHHHhhcC--CCC
Confidence            688999999999999998777677889999999999999865 1  1           56899999999999997  999


Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH----HHHcCCcCC---------------------
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL----AETIGVKTE---------------------  172 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~----~~~~g~~~~---------------------  172 (271)
                      +|++++|+|+||+|||||+++++.+++..+.+|+||+.|++..+..    +...+++.+                     
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~  146 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI  146 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999998778999999998765422    222343311                     


Q ss_pred             ------cceecCC--CCHHHHHHHHHHHHhcCCcc--EEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024152          173 ------NLLLAQP--DCGEQALSLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL  242 (271)
Q Consensus       173 ------~~~~~~~--~~~~e~~~~~~~l~~~~~~~--lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~la  242 (271)
                            .+.+.+.  .+.+++++.++++..+++++  +|||||++.+... . .       ...+.+++.++++.|+.+|
T Consensus       147 ~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~-~-~-------~~~r~~~i~~~~~~Lk~lA  217 (315)
T 3bh0_A          147 GEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPA-K-A-------NDSRTNQISQISRDLKKMA  217 (315)
T ss_dssp             HHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCS-C-T-------TSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCC-C-C-------CCCHHHHHHHHHHHHHHHH
Confidence                  2233322  47889999999988888899  9999999998631 1 0       0134467888999999999


Q ss_pred             hhcCcEEEEEcccccc--------cchhhhhhh
Q 024152          243 SLSQTILIFINQVFSI--------NLNKIIDES  267 (271)
Q Consensus       243 ke~~~~Vi~~sql~~~--------~~~~~l~~s  267 (271)
                      ++++|||++++|+...        +.+.++++|
T Consensus       218 k~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~s  250 (315)
T 3bh0_A          218 RELDVVVIALSQLSRQVEQRQDKRPMLSDLRES  250 (315)
T ss_dssp             HHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTT
T ss_pred             HHhCCeEEEEeecCcccccCCCCCCCHHHhhhh
Confidence            9999999999998733        556667665

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=99.96  E-value=3.7e-28  Score=221.03  Aligned_cols=196  Identities=59%  Similarity=0.920  Sum_probs=162.1

Q ss_pred             chHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152           63 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus        63 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      .+...++..++++|++.|+.+....+++. ....++++|||++.||.++++|||++|++++|+|+||+|||||+++++.+
T Consensus        19 ~~~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~   97 (366)
T 1xp8_A           19 KERSKAIETAMSQIEKAFGKGSIMKLGAE-SKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ   97 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTSSCCTTSC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcceecccc-ccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            46678999999999999998876655543 34568899999999999997679999999999999999999999999999


Q ss_pred             HhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchh
Q 024152          143 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA  222 (271)
Q Consensus       143 ~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~  222 (271)
                      ++..+++|+||+.|+...+.+++.+|++.+++.+.++.+.+++++.++.+....++++|||||++.+.+..++.+..++.
T Consensus        98 ~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~  177 (366)
T 1xp8_A           98 AQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDS  177 (366)
T ss_dssp             HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-------
T ss_pred             HHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccc
Confidence            99888899999999999988888999999999888888999999999888877889999999999998544444322322


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          223 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       223 ~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      +...+++.+++.++.|+.++++.+++||+++|++..+
T Consensus       178 ~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~  214 (366)
T 1xp8_A          178 LPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKI  214 (366)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC----
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccccc
Confidence            1224567889999999999999999999999998643

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=99.96  E-value=3.2e-28  Score=220.77  Aligned_cols=193  Identities=63%  Similarity=0.958  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152           65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus        65 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ...++..++++|++.|+++.++.+++. ....++++|||++.||.+++.|||++|++++|+|+||+|||||+++++.+++
T Consensus        10 ~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~   88 (356)
T 1u94_A           10 KQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   88 (356)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSSCCTTCC-CBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCceEcccc-ccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456889999999999999887777653 3456899999999999999656999999999999999999999999999999


Q ss_pred             hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhH
Q 024152          145 RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHM  224 (271)
Q Consensus       145 ~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~  224 (271)
                      ..+++|+|++.|+...+.+++.+|++.+++.+.++.+.++++..++.+....++++||||+++.+.+..++.+..++...
T Consensus        89 ~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~  168 (356)
T 1u94_A           89 REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM  168 (356)
T ss_dssp             HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------
T ss_pred             HCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchh
Confidence            88889999999999988888899999999888888888999888888877788999999999998753333322222222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          225 AMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       225 ~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      ..+++.+++.++.|+.++++.+++||+++|++..
T Consensus       169 ~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~  202 (356)
T 1u94_A          169 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK  202 (356)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Confidence            2445788999999999999999999999999865

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=99.96  E-value=8e-29  Score=222.74  Aligned_cols=182  Identities=18%  Similarity=0.175  Sum_probs=147.5

Q ss_pred             hHHHHHHHHHHHHHHhcC-CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152           64 KKDLALQQALDQITSSFG-KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++.+++.++++.|++.+. +..           .++++||||++||.+++  ||++|++++|+|+||+|||||+++++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~gi~TG~~~LD~~~g--Gl~~G~LiiIaG~pG~GKTt~al~ia~~   69 (338)
T 4a1f_A            3 NIKEVLESAMDLITENQRKGSL-----------EVTGIPTGFVQLDNYTS--GFNKGSLVIIGARPSMGKTSLMMNMVLS   69 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTT-----------CCCSBCCSCHHHHHHHC--SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhcCCC-----------CcCcccCCChHHHHHhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            467889999999998876 433           68999999999999997  9999999999999999999999999999


Q ss_pred             HhhcCCeEEEEcCCCCCCHH----HHHHcCCcCC-------------------------cceecC--CCCHHHHHHHHHH
Q 024152          143 AQRQGGYCVFIDAEHALDPS----LAETIGVKTE-------------------------NLLLAQ--PDCGEQALSLVDT  191 (271)
Q Consensus       143 ~~~~~g~v~~~~~e~~~~~~----~~~~~g~~~~-------------------------~~~~~~--~~~~~e~~~~~~~  191 (271)
                      ++..+++|+||+.|++..+.    ++...+++.+                         .+++.+  ..+..++++.+++
T Consensus        70 ~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~  149 (338)
T 4a1f_A           70 ALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRK  149 (338)
T ss_dssp             HHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHH
T ss_pred             HHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHH
Confidence            99988899999999886542    2222333322                         123322  2478899999999


Q ss_pred             HHhcC-CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchh
Q 024152          192 LIRSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNK  262 (271)
Q Consensus       192 l~~~~-~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~  262 (271)
                      +..++ ++++||||||+.+..        +. ...++.++++++++.|+.+|++++||||+++|++.        .|.++
T Consensus       150 l~~~~gg~~lIVIDyLqlm~~--------~~-~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~ls  220 (338)
T 4a1f_A          150 LKSQHKELGIAFIDYLQLMSG--------SK-ATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILS  220 (338)
T ss_dssp             HHHHCTTEEEEEEEEEECCCT--------HH-HHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGG
T ss_pred             HHHhcCCCCEEEEechHHhcC--------CC-CCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChH
Confidence            88887 899999999999863        11 12355567889999999999999999999999974        36788


Q ss_pred             hhhhh
Q 024152          263 IIDES  267 (271)
Q Consensus       263 ~l~~s  267 (271)
                      ++++|
T Consensus       221 DLreS  225 (338)
T 4a1f_A          221 DIKDS  225 (338)
T ss_dssp             GSEET
T ss_pred             hcccc
Confidence            88887

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.96  E-value=4.1e-28  Score=219.71  Aligned_cols=194  Identities=58%  Similarity=0.949  Sum_probs=162.5

Q ss_pred             hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152           64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +...++..++++|++.|+++.++.+++. .....++++||++.||.+++.||+++|++++|+|+||+|||||+++++.++
T Consensus         7 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A            7 DREKALELAMAQIDKNFGKGSVMRLGEE-VRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTSSCCTTCC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCceecccc-ccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999887777653 345688999999999999976799999999999999999999999999999


Q ss_pred             hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152          144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH  223 (271)
Q Consensus       144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~  223 (271)
                      +..+++|+|++.|....+.+++.+|++++++.+.++.+.++++..++.+....++++++||+++.+.+..++.+.+|+..
T Consensus        86 ~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~  165 (349)
T 2zr9_A           86 QAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH  165 (349)
T ss_dssp             HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----C
T ss_pred             HhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccch
Confidence            98888999999999988888889999999999888889999999888887777899999999999874333333223221


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      ...+++.+++.++.|+.++++.+++||+++|++..
T Consensus       166 ~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~  200 (349)
T 2zr9_A          166 VGLQARLMSQALRKMTGALNNSGTTAIFINELREK  200 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Confidence            12455678899999999999999999999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=99.95  E-value=3.3e-27  Score=208.62  Aligned_cols=161  Identities=29%  Similarity=0.480  Sum_probs=132.1

Q ss_pred             CCCccccCcHHHHHHhc---CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEcCCCCCCHHHHHHcCCc
Q 024152           96 HVPVVSTGSFALDIALG---TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVK  170 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~---~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~--~g~v~~~~~e~~~~~~~~~~~g~~  170 (271)
                      .++.++||+++||.+|+   +||+++| +++|.||||+|||||+++++.+++..  ++.|+|++.|..+.+.+++++|++
T Consensus         3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd   81 (333)
T 3io5_A            3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVD   81 (333)
T ss_dssp             ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCC
T ss_pred             CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCC
Confidence            46789999999999998   4899999 99999999999999999999999876  779999999999999899999999


Q ss_pred             CCcceecCCCCHHHH-HHHHHHH--HhcCCccEEEEcchhhhcCCCccCCccchhhHH--HHHHHHHHHHHHHHHHHhhc
Q 024152          171 TENLLLAQPDCGEQA-LSLVDTL--IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA--MQARLMSQALRKLSHSLSLS  245 (271)
Q Consensus       171 ~~~~~~~~~~~~~e~-~~~~~~l--~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~--~~~~~l~~~~r~L~~lake~  245 (271)
                      .+++.+..+.+.+++ +..+..+  +.+..++++||||++.+++..++.+++|+.+.+  .++|.+++.++.|..+|++.
T Consensus        82 ~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~  161 (333)
T 3io5_A           82 PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTK  161 (333)
T ss_dssp             GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998 7777665  556789999999999998777777766655444  68899999999999999999


Q ss_pred             CcEEEEEccccc
Q 024152          246 QTILIFINQVFS  257 (271)
Q Consensus       246 ~~~Vi~~sql~~  257 (271)
                      |++||+++|+++
T Consensus       162 ~i~vi~tNQV~k  173 (333)
T 3io5_A          162 NIPCIAINHTYE  173 (333)
T ss_dssp             TCEEEEEEEC--
T ss_pred             CCEEEEECCeee
Confidence            999999999987

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=99.93  E-value=1.7e-25  Score=235.23  Aligned_cols=195  Identities=63%  Similarity=0.944  Sum_probs=169.1

Q ss_pred             hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152           64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +...++..+++++++.|+++.++.+++. .....+++|||+++||.+++.||+++|++++|+||||+|||||+++++.++
T Consensus       329 ~~~~~l~~a~~~i~~~~g~~~~~~l~~~-~~~~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~  407 (2050)
T 3cmu_A          329 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA  407 (2050)
T ss_dssp             THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCcCcceecccc-cccCCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3456788999999999999998887764 345689999999999999966799999999999999999999999999999


Q ss_pred             hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152          144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH  223 (271)
Q Consensus       144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~  223 (271)
                      +..+++|+||+.|+...+.+++.+|++.+++.+.++.+.+++++.++.++.+.++++|||||++.+.++.++.+.+|+.+
T Consensus       408 a~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~  487 (2050)
T 3cmu_A          408 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH  487 (2050)
T ss_dssp             HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC
T ss_pred             HhcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccch
Confidence            98888999999999999888899999999999999999999999999888788999999999999985344333334333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      ...+++++++.++.|+.+|++.++|||+++|++..+
T Consensus       488 ~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~v  523 (2050)
T 3cmu_A          488 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI  523 (2050)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence            345667899999999999999999999999998653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.93  E-value=1.9e-25  Score=232.65  Aligned_cols=192  Identities=63%  Similarity=0.957  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152           66 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus        66 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      ..++..++.++++.|+++.++.+++. .....+++|||+++||.+++.|||++|++++|+||||+|||||+++++.+++.
T Consensus       331 ~~~l~~a~~~i~~~fg~~~~~~l~~~-~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~  409 (1706)
T 3cmw_A          331 QKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR  409 (1706)
T ss_dssp             HHHHHHHHHHHHHHHCGGGSEEGGGC-GGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcceecccc-ccccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45788999999999999988877754 23468899999999999996679999999999999999999999999999999


Q ss_pred             cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHH
Q 024152          146 QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA  225 (271)
Q Consensus       146 ~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~  225 (271)
                      .+++|+||+.|+...+.+++.+|++.+++.+.++.+.++++..++.++.+.++++|||||++.+.+..++.+.+|+.+..
T Consensus       410 ~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~  489 (1706)
T 3cmw_A          410 EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG  489 (1706)
T ss_dssp             TTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTT
T ss_pred             hCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchh
Confidence            88899999999999998899999999999998888999999998888878899999999999987533333323333333


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          226 MQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       226 ~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .+++++++.++.|+.++++.+||||+++|++..
T Consensus       490 ~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~  522 (1706)
T 3cmw_A          490 LAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK  522 (1706)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEEEEEECEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            567889999999999999999999999999865

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.91  E-value=7.5e-24  Score=220.77  Aligned_cols=195  Identities=63%  Similarity=0.941  Sum_probs=173.8

Q ss_pred             hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152           64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +-..++..++.+|++.|++++.+.+++.. ....+.+|||+..||.+||.||+|+|.+++|.||+|+|||||+++++..+
T Consensus      1377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A         1377 NKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGSEEGGGCG-GGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCCccEEECCCCC-CCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34557888999999999999998888643 44689999999999999997799999999999999999999999999999


Q ss_pred             hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152          144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH  223 (271)
Q Consensus       144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~  223 (271)
                      +..++.++||+.|...++.+++.+|++.+++.+.++.+.++.++.+..+++...+++|+||++..+.|..++.++.|+.+
T Consensus      1456 ~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~ 1535 (1706)
T 3cmw_A         1456 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1535 (1706)
T ss_dssp             HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------
T ss_pred             HhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999889998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      .+.++|.+++.+|.|...++..+|++|++||++.++
T Consensus      1536 ~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A         1536 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 1571 (1706)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC---
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCcEEEEeecccccc
Confidence            889999999999999999999999999999999765

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=99.91  E-value=1.2e-23  Score=221.26  Aligned_cols=195  Identities=63%  Similarity=0.944  Sum_probs=176.9

Q ss_pred             hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152           64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +...++..++.+|++.|++++.+.+++. ....++.+|||.-.||..||.||+|+|.++.|+||.++|||||++++...+
T Consensus      1721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~ 1799 (2050)
T 3cmu_A         1721 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1799 (2050)
T ss_dssp             THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTCCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCcceEECCCC-cccCCCcccCCcHHHHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHH
Confidence            4566899999999999999999999974 356789999999999999999999999999999999999999999999999


Q ss_pred             hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152          144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH  223 (271)
Q Consensus       144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~  223 (271)
                      ++.+|.+.|++.|...++.+++.+|++.+++.+.+|.+.++.++++..+++...+++||||++..+.|+.++.++.|+.+
T Consensus      1800 ~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~p~~~~~~~~~~~~ 1879 (2050)
T 3cmu_A         1800 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1879 (2050)
T ss_dssp             HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHC-------
T ss_pred             hhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCCcEEEEcchhhcCcHHHhcCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      .+.++|.|++.+|.|.....+.+|+|||+||++.++
T Consensus      1880 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~q~r~~~ 1915 (2050)
T 3cmu_A         1880 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 1915 (2050)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECCC---
T ss_pred             hhHHHHHHHHHHHHHHhhhccCceEEEEhhHhHHHh
Confidence            999999999999999999999999999999999776

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=99.89  E-value=8.6e-23  Score=183.05  Aligned_cols=171  Identities=26%  Similarity=0.386  Sum_probs=122.9

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCHH----HHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~~----~~~  165 (271)
                      ...+++||++.||.+++ ||+++|++++|+|+||+|||||+++++.+++..      +++|+|++.|+.+...    +++
T Consensus        85 ~~~~i~TG~~~LD~~L~-GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~  163 (324)
T 2z43_A           85 NVKKISTGSQALDGLLA-GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAK  163 (324)
T ss_dssp             SCCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred             cCCcccCCchhHHHhcC-CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            56899999999999998 899999999999999999999999999987654      6789999999986542    456


Q ss_pred             HcCCcCC----cceecCCCCHHH---HHHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHH
Q 024152          166 TIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK  237 (271)
Q Consensus       166 ~~g~~~~----~~~~~~~~~~~e---~~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~  237 (271)
                      .++++++    ++.+.+..+.++   ++..++.+..+ .+++++|||+++.+.. .++.+. |  ....+++.+.+.++.
T Consensus       164 ~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~-~~~~~~-g--~~~~r~~~~~~~l~~  239 (324)
T 2z43_A          164 ALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR-AEYPGR-E--NLAVRQQKLNKHLHQ  239 (324)
T ss_dssp             HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH-HHSCTT-T--SHHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh-hhhcCc-c--cHHHHHHHHHHHHHH
Confidence            6787764    456666666664   45556666666 7899999999998863 222211 1  122445678899999


Q ss_pred             HHHHHhhcCcEEEEEcccccccc-------hhhhhhhccCC
Q 024152          238 LSHSLSLSQTILIFINQVFSINL-------NKIIDESSGHL  271 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~~~~-------~~~l~~s~~~~  271 (271)
                      |+.++++.+++||+++|+....-       .+..+..|.|+
T Consensus       240 L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~  280 (324)
T 2z43_A          240 LTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHV  280 (324)
T ss_dssp             HHHHHHHHTCEEEEEEEC-----------------------
T ss_pred             HHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhh
Confidence            99999999999999999986542       24555667663

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=99.89  E-value=8.5e-23  Score=184.49  Aligned_cols=159  Identities=28%  Similarity=0.448  Sum_probs=122.0

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHH----HHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~----~~~  165 (271)
                      ...+++||++.||.+++ ||+++|++++|+|+||+|||||+++++.+++.      .+++|+||+.|+.+...    ++.
T Consensus       100 ~~~~i~TG~~~LD~~Lg-GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~  178 (343)
T 1v5w_A          100 MVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD  178 (343)
T ss_dssp             GCCCBCCSCHHHHHHTT-SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHH
T ss_pred             ccceeecCChhHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            46889999999999998 89999999999999999999999999998754      46789999999986643    566


Q ss_pred             HcCCcC----CcceecCCCCHHH---HHHHHHHHHhc--CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHH
Q 024152          166 TIGVKT----ENLLLAQPDCGEQ---ALSLVDTLIRS--GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR  236 (271)
Q Consensus       166 ~~g~~~----~~~~~~~~~~~~e---~~~~~~~l~~~--~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r  236 (271)
                      .+++++    +++.+.+..+.++   ++..++.+..+  .++++||||+++.+.. .++.+. |  ....+++.+.+.++
T Consensus       179 ~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~-~~~~~~-g--~~~~r~~~l~~~l~  254 (343)
T 1v5w_A          179 RFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR-VDFSGR-G--ELAERQQKLAQMLS  254 (343)
T ss_dssp             HTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH-HHCCGG-G--CHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH-HHhccc-c--cHHHHHHHHHHHHH
Confidence            677776    3555555555554   44445666666  7899999999998873 333211 1  12345567889999


Q ss_pred             HHHHHHhhcCcEEEEEccccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      .|+.++++++++||+++|+....
T Consensus       255 ~L~~la~~~~~~Vi~~nq~~~~~  277 (343)
T 1v5w_A          255 RLQKISEEYNVAVFVTNQMTADP  277 (343)
T ss_dssp             HHHHHHHHHTCEEEEEECC----
T ss_pred             HHHHHHHHhCCEEEEEeeceecC
Confidence            99999999999999999998654

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=99.89  E-value=5.1e-23  Score=194.78  Aligned_cols=151  Identities=12%  Similarity=0.133  Sum_probs=122.0

Q ss_pred             CCCcccc-CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH----HHHHHcCC
Q 024152           96 HVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP----SLAETIGV  169 (271)
Q Consensus        96 ~~~~i~T-g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~----~~~~~~g~  169 (271)
                      ...+++| |++.||.+++  |+++|++++|+|+||+|||||+++++.+++.. +.+|+||+.|++..+    .++...++
T Consensus       220 ~~~~i~t~G~~~LD~~lg--Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~  297 (503)
T 1q57_A          220 ESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV  297 (503)
T ss_dssp             CTTCSCCSSCTTHHHHHC--CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTS
T ss_pred             ccCCccccchhhhhHhhc--ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCC
Confidence            5689999 9999999997  99999999999999999999999999999986 678999999988654    22344555


Q ss_pred             cCCc--------------------------ceecCC---CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccc
Q 024152          170 KTEN--------------------------LLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMG  220 (271)
Q Consensus       170 ~~~~--------------------------~~~~~~---~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g  220 (271)
                      +.+.                          +.+.+.   .+.++++..++++..++++++||||||+.+... . .   +
T Consensus       298 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~-~-~---~  372 (503)
T 1q57_A          298 RLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA-S-G---E  372 (503)
T ss_dssp             CCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC-C-S---C
T ss_pred             ChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC-C-C---C
Confidence            4432                          233332   578899999999888889999999999988631 1 0   1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       221 ~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                          ..+.+.+.++++.|+.+|++++|||++++|++.
T Consensus       373 ----~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r  405 (503)
T 1q57_A          373 ----SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN  405 (503)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred             ----CCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc
Confidence                133467888999999999999999999999985

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=99.89  E-value=5.2e-23  Score=184.10  Aligned_cols=159  Identities=28%  Similarity=0.425  Sum_probs=123.4

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------------cC----CeEEEEcCCCCC
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------------QG----GYCVFIDAEHAL  159 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------------~~----g~v~~~~~e~~~  159 (271)
                      ...+++||++.||.+++ ||+++|++++|+|+||+|||+|+++++.+++.            .+    ++|+|++.|+.+
T Consensus        76 ~~~~i~TG~~~LD~~l~-GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~  154 (322)
T 2i1q_A           76 TVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF  154 (322)
T ss_dssp             TCCEECCSCHHHHHHTT-SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCC
T ss_pred             cCCeecCCChhHHHhcC-CCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCC
Confidence            57899999999999998 89999999999999999999999999987542            23    689999999986


Q ss_pred             CHH----HHHHcCCcC----CcceecCCCCHHH---HHHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHHHH
Q 024152          160 DPS----LAETIGVKT----ENLLLAQPDCGEQ---ALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ  227 (271)
Q Consensus       160 ~~~----~~~~~g~~~----~~~~~~~~~~~~e---~~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~  227 (271)
                      ...    +++.+++++    +++.+.+..+.++   ++..+..+..+ .++++||||+++.+.. .++.+. +  ....+
T Consensus       155 ~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~-~~~~~~-~--~~~~r  230 (322)
T 2i1q_A          155 RPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR-NEYTGR-G--KLAER  230 (322)
T ss_dssp             CHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH-HHCCCT-T--SHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH-HHhcCC-c--cHHHH
Confidence            542    556678776    3566666667665   44455566666 6799999999998863 222211 1  12344


Q ss_pred             HHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          228 ARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       228 ~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      ++.+.+.++.|+.++++++++||+++|+....
T Consensus       231 ~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~  262 (322)
T 2i1q_A          231 QQKLGRHMATLNKLADLFNCVVLVTNQVSAKP  262 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEEECEECC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEEEECceeecC
Confidence            56788999999999999999999999998653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.88  E-value=7e-22  Score=168.62  Aligned_cols=159  Identities=24%  Similarity=0.387  Sum_probs=114.3

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~  165 (271)
                      .+++++||++.||.+++ ||+++|++++|+||||+|||||++++++++..      .++.++|++.+..+..    .+++
T Consensus         2 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~   80 (243)
T 1n0w_A            2 EIIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE   80 (243)
T ss_dssp             CCCEECCSCHHHHHHTT-TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred             CceEecCCChHHHHhhc-CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHH
Confidence            45789999999999998 89999999999999999999999999997543      2567899999886443    3456


Q ss_pred             HcCCcC----CcceecCCCCHHHHHHH---HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          166 TIGVKT----ENLLLAQPDCGEQALSL---VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       166 ~~g~~~----~~~~~~~~~~~~e~~~~---~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      .+++++    +++.+....+.++....   +.......++++++||+++.... ..+++.   .....+++.+.+.++.|
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~-~~~~~~---~~~~~r~~~~~~~~~~l  156 (243)
T 1n0w_A           81 RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR-TDYSGR---GELSARQMHLARFLRML  156 (243)
T ss_dssp             HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----------CHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH-HHhcCC---ccHHHHHHHHHHHHHHH
Confidence            678877    46666666666654433   44445567899999999998873 222211   11123344577788888


Q ss_pred             HHHHhhcCcEEEEEccccccc
Q 024152          239 SHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~~~  259 (271)
                      +.++++.+++||+++|.....
T Consensus       157 ~~~~~~~~~tvi~~~h~~~~~  177 (243)
T 1n0w_A          157 LRLADEFGVAVVITNQVVAQV  177 (243)
T ss_dssp             HHHHHHHCCEEEEEC------
T ss_pred             HHHHHHcCCEEEEEeeeeecC
Confidence            888999999999999987543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=99.87  E-value=2.3e-22  Score=172.05  Aligned_cols=150  Identities=22%  Similarity=0.296  Sum_probs=111.1

Q ss_pred             CCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCCCCHHHH--HHcCCcC
Q 024152           95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLA--ETIGVKT  171 (271)
Q Consensus        95 ~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~~~~~~~--~~~g~~~  171 (271)
                      .+++++|||+++||.+++ |||++|++++|+|+||+|||+|+++++.+.+. .+++|+|++.|++..+...  ...+...
T Consensus         7 ~~i~ri~TGi~~LD~~l~-GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~   85 (251)
T 2zts_A            7 QPVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDF   85 (251)
T ss_dssp             -CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCH
T ss_pred             CCCCeecCCcHHHHHhhc-CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCCh
Confidence            378999999999999998 89999999999999999999999999988654 4668999999987654322  2223221


Q ss_pred             C------cc------------------eecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHH
Q 024152          172 E------NL------------------LLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ  227 (271)
Q Consensus       172 ~------~~------------------~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~  227 (271)
                      +      ++                  ......+.++++..++......+++++++|+++.+....      ..      
T Consensus        86 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~------~~------  153 (251)
T 2zts_A           86 EKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL------EE------  153 (251)
T ss_dssp             HHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS------SS------
T ss_pred             HHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc------cC------
Confidence            1      11                  111223456777777777778899999999998775211      11      


Q ss_pred             HHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          228 ARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       228 ~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      .+.+.+.++.|+.+++++|++|++++|+..
T Consensus       154 ~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~  183 (251)
T 2zts_A          154 ERKIREVLLKLNTILLEMGVTTILTTEAPD  183 (251)
T ss_dssp             GGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred             hHHHHHHHHHHHHHHHHcCCCeEEEEEEec
Confidence            123456778888899999999999999864

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.87  E-value=1.5e-21  Score=179.31  Aligned_cols=157  Identities=27%  Similarity=0.489  Sum_probs=119.5

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~  165 (271)
                      ...+++||++.||.+++ ||+++|++++|+||||+|||||+++++.+...      .+++++||+.|..+..    .+++
T Consensus       156 ~~~~i~TG~~~LD~lLg-GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~  234 (400)
T 3lda_A          156 ELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ  234 (400)
T ss_dssp             TSCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred             cCCccccCChhHHHHhc-CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHH
Confidence            46899999999999998 89999999999999999999999999876653      3467999999987664    3567


Q ss_pred             HcCCcCC----cceecCCCCHHHH---HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          166 TIGVKTE----NLLLAQPDCGEQA---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       166 ~~g~~~~----~~~~~~~~~~~e~---~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      .+|++++    ++.+....+.++.   +..+..++...++++++||+++.+++ .+++++ |  ....+++.+.++++.|
T Consensus       235 ~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~-~~~sg~-g--~l~~Rq~~l~~il~~L  310 (400)
T 3lda_A          235 RFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-TDFSGR-G--ELSARQMHLAKFMRAL  310 (400)
T ss_dssp             HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------C--CHHHHHHHHHHHHHHH
T ss_pred             HcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc-hhhcCc-c--chHHHHHHHHHHHHHH
Confidence            7888776    5566666665543   34444555567899999999999874 444431 1  1234566778889999


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      ++++++++++||+++|+..
T Consensus       311 ~~lake~gitVIlv~Hv~~  329 (400)
T 3lda_A          311 QRLADQFGVAVVVTNQVVA  329 (400)
T ss_dssp             HHHHHHHCCEEEEEEEC--
T ss_pred             HHHHHHcCCEEEEEEeecc
Confidence            9999999999999999954

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.85  E-value=3.9e-21  Score=164.22  Aligned_cols=146  Identities=23%  Similarity=0.268  Sum_probs=109.6

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc--
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN--  173 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~--  173 (271)
                      .+++||++.||.+++ ||+++|++++|+|+||+|||||+++++...++.+++|+|++.++...+  .+...+|+++++  
T Consensus         3 ~~i~tG~~~LD~~l~-gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~   81 (247)
T 2dr3_A            3 RRVKTGIPGVDEILH-GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYE   81 (247)
T ss_dssp             CEECCCCTTHHHHTT-TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred             ccccCCchhHHHHcC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence            579999999999998 899999999999999999999999999999888889999999876543  233446666532  


Q ss_pred             ----ceec-------------------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHH
Q 024152          174 ----LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL  230 (271)
Q Consensus       174 ----~~~~-------------------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~  230 (271)
                          +.+.                   ...+.+++...+++...+.++++++||+++.+...       ...       .
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~-------~~~-------~  147 (247)
T 2dr3_A           82 EKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN-------KPA-------M  147 (247)
T ss_dssp             HHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT-------CGG-------G
T ss_pred             hCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC-------CHH-------H
Confidence                1111                   12355677777777766678999999999988621       111       1


Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          231 MSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       231 l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      ..+.+..|++++++.|++|++++|....
T Consensus       148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~  175 (247)
T 2dr3_A          148 ARSIILQLKRVLAGTGCTSIFVSQVSVG  175 (247)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred             HHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            1234556667788999999999998864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.84  E-value=2.4e-20  Score=168.80  Aligned_cols=170  Identities=25%  Similarity=0.379  Sum_probs=119.7

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--hc----CCeEEEEcCCCCCCHH----HHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQ----GGYCVFIDAEHALDPS----LAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~----~g~v~~~~~e~~~~~~----~~~  165 (271)
                      ....++||++.||.+++ ||+++|++++|+|+||+|||||+++++++++  +.    +|.|+|++++..+.+.    +.+
T Consensus       109 ~~~~isTG~~~LD~lL~-ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q  187 (349)
T 1pzn_A          109 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ  187 (349)
T ss_dssp             TCCEECCSCHHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred             cCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            46889999999999998 9999999999999999999999999999984  33    3688999998875432    344


Q ss_pred             HcCCcC----CcceecCCCCH---HHHHHHHHHHHhc-----CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152          166 TIGVKT----ENLLLAQPDCG---EQALSLVDTLIRS-----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ  233 (271)
Q Consensus       166 ~~g~~~----~~~~~~~~~~~---~e~~~~~~~l~~~-----~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~  233 (271)
                      ..++..    +++.+....+.   .+.+..++.+...     .+++++++|+++..+. .++.+   ......+++.+.+
T Consensus       188 ~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld-~~~~~---~~~~~~r~~~~~~  263 (349)
T 1pzn_A          188 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIG---RGALAERQQKLAK  263 (349)
T ss_dssp             TTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH-HHCCS---TTTHHHHHHHHHH
T ss_pred             HcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh-hhhcc---cccHHHHHHHHHH
Confidence            445443    34444443332   3455566666655     6899999999998762 22211   1122234456778


Q ss_pred             HHHHHHHHHhhcCcEEEEEccccccc-------chhhhhhhccC
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFSIN-------LNKIIDESSGH  270 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~~~-------~~~~l~~s~~~  270 (271)
                      .++.|++++++.+++||+++|....+       ..+..+..|+|
T Consensus       264 ~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~  307 (349)
T 1pzn_A          264 HLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAH  307 (349)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECC---------------CCCCCT
T ss_pred             HHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEee
Confidence            88888888999999999999988643       23455666766

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.83  E-value=1.8e-20  Score=157.49  Aligned_cols=146  Identities=34%  Similarity=0.466  Sum_probs=106.4

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH----HHHHHcCCcCC--
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKTE--  172 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~----~~~~~~g~~~~--  172 (271)
                      .++||++.||.+++ ||+++|++++|+|+||+|||||+++++.   ..+++|+|++.+.....    .+....++.++  
T Consensus         1 ri~tG~~~LD~~l~-Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~   76 (220)
T 2cvh_A            1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEA   76 (220)
T ss_dssp             CBCCSCHHHHHHTT-SSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHH
T ss_pred             CcccCcHHHHHhhc-CCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHH
Confidence            37899999999998 8999999999999999999999999999   55678999998874443    12233444332  


Q ss_pred             --cceecCCCCHH---HHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCc
Q 024152          173 --NLLLAQPDCGE---QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT  247 (271)
Q Consensus       173 --~~~~~~~~~~~---e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~  247 (271)
                        ++.+....+.+   +.++.++.+..+ ++++++||+++.......      .  ...+.+.+.+.++.|+.++++.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~------~--~~~~~~~~~~~~~~L~~l~~~~~~  147 (220)
T 2cvh_A           77 LSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEE------N--RSGLIAELSRQLQVLLWIARKHNI  147 (220)
T ss_dssp             HHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGG------G--SSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcC------c--hHHHHHHHHHHHHHHHHHHHHcCC
Confidence              23444444433   345556665544 799999999997753110      0  002235677788888888999999


Q ss_pred             EEEEEccccc
Q 024152          248 ILIFINQVFS  257 (271)
Q Consensus       248 ~Vi~~sql~~  257 (271)
                      +|++++|...
T Consensus       148 ~vi~~~h~~~  157 (220)
T 2cvh_A          148 PVIVINQVHF  157 (220)
T ss_dssp             CEEEEECSSS
T ss_pred             EEEEEeeEEE
Confidence            9999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.83  E-value=6.7e-20  Score=154.94  Aligned_cols=158  Identities=26%  Similarity=0.414  Sum_probs=112.7

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~  165 (271)
                      .+++++||++.||.+++ ||+++|++++|+||||||||||++++++...+      ..+.++|++.+.....    .+.+
T Consensus         3 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~   81 (231)
T 4a74_A            3 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ   81 (231)
T ss_dssp             CCCEECCSCHHHHHHTT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred             cCCccCCCChhHHhHhc-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            67889999999999998 89999999999999999999999999998775      3566899998876543    3455


Q ss_pred             HcCCcCC----cceecCCCCHHH---HHHHHHHHHh-----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152          166 TIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIR-----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ  233 (271)
Q Consensus       166 ~~g~~~~----~~~~~~~~~~~e---~~~~~~~l~~-----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~  233 (271)
                      ..++.++    ++.+.......+   ....+..+..     ..+++++++|+++...+ .++++.   .....+++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~-~~~~~~---~~~~~r~~~~~~  157 (231)
T 4a74_A           82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIGR---GALAERQQKLAK  157 (231)
T ss_dssp             HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH-HHSCST---THHHHHHHHHHH
T ss_pred             HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc-cccCCC---cchhHHHHHHHH
Confidence            5666653    444444444332   2233334444     56899999999987753 222221   111233444567


Q ss_pred             HHHHHHHHHhhcCcEEEEEcccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .++.|++++++.+++||+++|....
T Consensus       158 ~~~~l~~~~~~~g~tvi~vtH~~~~  182 (231)
T 4a74_A          158 HLADLHRLANLYDIAVFVTNQVQAN  182 (231)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEECC--
T ss_pred             HHHHHHHHHHHCCCeEEEEeecccC
Confidence            7778888899999999999996654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.82  E-value=6.2e-20  Score=161.97  Aligned_cols=150  Identities=13%  Similarity=0.166  Sum_probs=106.9

Q ss_pred             CCCcccc-CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcCCCCCCHHHHH----HcCC
Q 024152           96 HVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAEHALDPSLAE----TIGV  169 (271)
Q Consensus        96 ~~~~i~T-g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~e~~~~~~~~~----~~g~  169 (271)
                      ...+++| |++.||.+++  |+++|++++|+|+||+|||||++++++++++..| +|+|++.|+...+...+    ..++
T Consensus        13 ~~~~i~t~g~~~Ld~i~~--~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~   90 (296)
T 1cr0_A           13 ESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV   90 (296)
T ss_dssp             CCCCBCCCSCTTHHHHHC--SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred             CcCCcccCCHHHHHHHhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCC
Confidence            5789999 9999999997  9999999999999999999999999999998855 89999988753221111    1122


Q ss_pred             cC--------------------------CcceecC---CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccc
Q 024152          170 KT--------------------------ENLLLAQ---PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMG  220 (271)
Q Consensus       170 ~~--------------------------~~~~~~~---~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g  220 (271)
                      ..                          ..+.+..   ..+..++.+.++......+++++++|+++.+....       
T Consensus        91 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~-------  163 (296)
T 1cr0_A           91 RLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS-------  163 (296)
T ss_dssp             CGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-------------
T ss_pred             ChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC-------
Confidence            11                          1122222   25677887777765556789999999999876310       


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       221 ~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                        ......+.+..+.+.|+.++++.++|||+++|..
T Consensus       164 --~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~  197 (296)
T 1cr0_A          164 --GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (296)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence              0001113455677778888999999999999995

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.82  E-value=1.9e-19  Score=152.07  Aligned_cols=144  Identities=24%  Similarity=0.336  Sum_probs=106.3

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcce
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENLL  175 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~~  175 (271)
                      .+++||++.||.+++ ||+++|++++|+|+||+|||||++++++...+.+++|+|++.+.....  .....+++.++.+.
T Consensus         3 ~~i~tg~~~Ld~~~~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (235)
T 2w0m_A            3 SRLSTGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI   81 (235)
T ss_dssp             CEECCSCHHHHGGGT-TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred             ccccCCchHHHHHhc-CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence            478999999999997 799999999999999999999999999999988889999998775433  22335666655321


Q ss_pred             -----ec-------------CCCCHHHHHHHHHHHHhcCCcc--EEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHH
Q 024152          176 -----LA-------------QPDCGEQALSLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL  235 (271)
Q Consensus       176 -----~~-------------~~~~~~e~~~~~~~l~~~~~~~--lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~  235 (271)
                           ..             ...+..++...+.......+++  ++++|+++.+...+.     .         ...+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~-----~---------~~~~~~  147 (235)
T 2w0m_A           82 EKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP-----A---------MARKIS  147 (235)
T ss_dssp             TTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG-----G---------GHHHHH
T ss_pred             hCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH-----H---------HHHHHH
Confidence                 11             1225667666666655556788  999999998753110     0         123455


Q ss_pred             HHHHHHHhhcCcEEEEEcccc
Q 024152          236 RKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       236 r~L~~lake~~~~Vi~~sql~  256 (271)
                      +.|+.++++.+++|++++|..
T Consensus       148 ~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A          148 YYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             HHHHHHHHHTTEEEEEEEC--
T ss_pred             HHHHHHHHhCCCeEEEEeccC
Confidence            666667889999999999987

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.73  E-value=6.8e-18  Score=147.77  Aligned_cols=146  Identities=17%  Similarity=0.254  Sum_probs=102.1

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc----------CCeEEEEcCCCCCCHH--HH
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----------GGYCVFIDAEHALDPS--LA  164 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~----------~g~v~~~~~e~~~~~~--~~  164 (271)
                      .+.++||++.||.+++  |+++|++++|+|+||+|||||++++++.++..          .+.|+|++.|+.....  ..
T Consensus        10 ~~~i~tg~~~ld~~lg--gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~   87 (279)
T 1nlf_A           10 LEAFAAAPPPLDYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRL   87 (279)
T ss_dssp             HHHHHSCCCCCCEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHH
T ss_pred             HHHhcCCCCChheeEC--CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHH
Confidence            3568999999999997  99999999999999999999999999977752          4678999988765432  23


Q ss_pred             HHcCCcCC---------cceecCC-------CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHH
Q 024152          165 ETIGVKTE---------NLLLAQP-------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQA  228 (271)
Q Consensus       165 ~~~g~~~~---------~~~~~~~-------~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~  228 (271)
                      ..++...+         .+.+.+.       .+..+ +..++.+..  ++++++||+++.+.+.++     ..      .
T Consensus        88 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~-----~~------~  153 (279)
T 1nlf_A           88 HALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEE-----NA------S  153 (279)
T ss_dssp             HHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCT-----TC------H
T ss_pred             HHHHhhcChhhhhhccCceEEeecCCCCcccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCc-----Cc------h
Confidence            33444322         2222211       22222 445555543  589999999998764211     11      1


Q ss_pred             HHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          229 RLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       229 ~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      +.+..+++.|+.++++.+++||+++|....
T Consensus       154 ~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~  183 (279)
T 1nlf_A          154 GPMAQVIGRMEAIAADTGCSIVFLHHASKG  183 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence            345566778888889999999999998854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.59  E-value=1.2e-14  Score=138.00  Aligned_cols=147  Identities=21%  Similarity=0.231  Sum_probs=103.5

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH--HHHcCCcCCc
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL--AETIGVKTEN  173 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~--~~~~g~~~~~  173 (271)
                      .+..++||+++||.+++ ||+++|++++|.|+||+|||||++++++...+.+++++|+..+.......  +..++++.+.
T Consensus       259 ~~~~l~~g~~~ld~vL~-g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~  337 (525)
T 1tf7_A          259 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEE  337 (525)
T ss_dssp             CCCEECCSCHHHHHHTT-SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHH
T ss_pred             ccceeecChHHHHHHhC-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHH
Confidence            56789999999999998 89999999999999999999999999999988766788998876543321  2234443211


Q ss_pred             ------ceec----CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 024152          174 ------LLLA----QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS  243 (271)
Q Consensus       174 ------~~~~----~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lak  243 (271)
                            +.+.    ...+..+....+.......+++++++|+++.+...  .   ++     .   ...+.+..+.+.++
T Consensus       338 ~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~---~~-----~---~~~~~i~~ll~~l~  404 (525)
T 1tf7_A          338 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--V---SN-----N---AFRQFVIGVTGYAK  404 (525)
T ss_dssp             HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--S---CH-----H---HHHHHHHHHHHHHH
T ss_pred             HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--C---Ch-----H---HHHHHHHHHHHHHH
Confidence                  1111    11355565555444444578999999988887631  1   11     1   12334444555567


Q ss_pred             hcCcEEEEEcccc
Q 024152          244 LSQTILIFINQVF  256 (271)
Q Consensus       244 e~~~~Vi~~sql~  256 (271)
                      +.|++||+++|..
T Consensus       405 ~~g~tvilvsh~~  417 (525)
T 1tf7_A          405 QEEITGLFTNTSD  417 (525)
T ss_dssp             HTTCEEEEEEECS
T ss_pred             hCCCEEEEEECcc
Confidence            7899999999986

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.51  E-value=4.1e-15  Score=135.33  Aligned_cols=139  Identities=16%  Similarity=0.171  Sum_probs=96.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...+++|.|. ++++... .....+.+|+.+|+..+++.+++.+++.+..+..
T Consensus        25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~-i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~  103 (381)
T 3rlf_A           25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF-IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA  103 (381)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred             EECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE-ECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence            5779999999999999999999999999999999854 4443221 1223356899999999998899999887654321


Q ss_pred             hc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 RS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      ..          .-++.+-++.+...+ ..+++  .|++||+..++++.                     ++...|+++.
T Consensus       104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~-p~~LS--GGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~  180 (381)
T 3rlf_A          104 GAKKEVINQRVNQVAEVLQLAHLLDRK-PKALS--GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH  180 (381)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCGGGTTCC-GGGSC--HHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhcCC-hhHCC--HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence            10          001111122222222 13344  38999999999983                     3444666677


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.|+|+|+++|-..
T Consensus       181 ~~~g~tii~vTHd~~  195 (381)
T 3rlf_A          181 KRLGRTMIYVTHDQV  195 (381)
T ss_dssp             HHHCCEEEEECSCHH
T ss_pred             HhCCCEEEEEECCHH
Confidence            888999999999753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.49  E-value=9.3e-14  Score=131.94  Aligned_cols=149  Identities=17%  Similarity=0.196  Sum_probs=98.4

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHH--HHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcC
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHV--IAEAQRQGGYCVFIDAEHALDP--SLAETIGVKT  171 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~i--a~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~  171 (271)
                      .+..++||++.||.+.. ||+++|++++|+|+||||||||++++  ++...+..| .+|++.+.....  ..++.+|+++
T Consensus        17 ~~~~~~~g~~~Ld~i~~-G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g-~i~v~g~~~~~~~~~~~~~~g~~~   94 (525)
T 1tf7_A           17 AIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP-GVFVTFEETPQDIIKNARSFGWDL   94 (525)
T ss_dssp             SCCEECCCCTTHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC-EEEEESSSCHHHHHHHHGGGTCCH
T ss_pred             ccccccCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC-EEEEEEeCCHHHHHHHHHHcCCCh
Confidence            46789999999999987 79999999999999999999999994  566666666 477776653221  3456688887


Q ss_pred             Ccce------ecCC------------CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152          172 ENLL------LAQP------------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ  233 (271)
Q Consensus       172 ~~~~------~~~~------------~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~  233 (271)
                      |++.      ....            ....+.+......+...+++++++|++..+.+...+     +   ....+.+.+
T Consensus        95 q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~l-----D---~~~~~~l~~  166 (525)
T 1tf7_A           95 AKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDA-----S---SVVRRELFR  166 (525)
T ss_dssp             HHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCC-----H---HHHHHHHHH
T ss_pred             HHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCC-----H---HHHHHHHHH
Confidence            7532      1110            012233333333344567899999999887642110     0   111223434


Q ss_pred             HHHHHHHHHhhcCcEEEEEcccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .++.|    ++.|+|||+++|....
T Consensus       167 ll~~l----~~~g~tvl~itH~~~~  187 (525)
T 1tf7_A          167 LVARL----KQIGATTVMTTERIEE  187 (525)
T ss_dssp             HHHHH----HHHTCEEEEEEECSSS
T ss_pred             HHHHH----HHCCCEEEEEecCCCC
Confidence            44444    4469999999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.49  E-value=4e-15  Score=134.47  Aligned_cols=139  Identities=18%  Similarity=0.182  Sum_probs=95.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-----CCHHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-----LDPSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-----~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.||||||||||++.|++...+++|.|.+ +++..     ......+.+|+.+|+..+++.+++.+++.+.
T Consensus        26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i-~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~  104 (359)
T 3fvq_A           26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL-SGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG  104 (359)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE-TTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE-CCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence            57799999999999999999999999999999888554 43221     1123456799999999888889999887653


Q ss_pred             HHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          190 DTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       190 ~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                      .....          ..-++.+-++.+...+ ..++++  |++||+..++++.                     ++...|
T Consensus       105 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSG--Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l  181 (359)
T 3fvq_A          105 LGNGKGRTAQERQRIEAMLELTGISELAGRY-PHELSG--GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM  181 (359)
T ss_dssp             STTSSCCSHHHHHHHHHHHHHHTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             HHHcCCChHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            21100          0001111122222222 133443  8999999999982                     233357


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      +++.++.++|||+++|-..
T Consensus       182 ~~~~~~~g~tvi~vTHd~~  200 (359)
T 3fvq_A          182 IAALRANGKSAVFVSHDRE  200 (359)
T ss_dssp             HHHHHHTTCEEEEECCCHH
T ss_pred             HHHHHhCCCEEEEEeCCHH
Confidence            7778889999999999753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.49  E-value=1.2e-14  Score=131.58  Aligned_cols=140  Identities=17%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-H---HHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-P---SLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      -+++|++++|.||||||||||++++++...+++|.|.|.+.+-. .. .   .+++.+|+.+|+..+++..++.+++.+.
T Consensus        50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~  129 (366)
T 3tui_C           50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP  129 (366)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH
T ss_pred             EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH
Confidence            67799999999999999999999999999999998555432221 11 1   2356799999999888888999888765


Q ss_pred             HHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHH
Q 024152          190 DTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKL  238 (271)
Q Consensus       190 ~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L  238 (271)
                      ......          .-++.+-++.....+ ..+++  .|++||+..++++                     ..+...|
T Consensus       130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LS--GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL  206 (366)
T 3tui_C          130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSY-PSNLS--GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL  206 (366)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-TTTSC--HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            432100          001111122222222 13344  3899999999987                     3455566


Q ss_pred             HHHHhhcCcEEEEEccccc
Q 024152          239 SHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~  257 (271)
                      +++.++.|+|||+++|-..
T Consensus       207 ~~l~~~~g~Tii~vTHdl~  225 (366)
T 3tui_C          207 KDINRRLGLTILLITHEMD  225 (366)
T ss_dssp             HHHHHHSCCEEEEEESCHH
T ss_pred             HHHHHhCCCEEEEEecCHH
Confidence            6677788999999999763

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=99.48  E-value=1.3e-14  Score=128.62  Aligned_cols=130  Identities=15%  Similarity=0.062  Sum_probs=91.3

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC--CCCCCHHHHHHcCCcCCcce
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHALDPSLAETIGVKTENLL  175 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~--e~~~~~~~~~~~g~~~~~~~  175 (271)
                      ..++||++.||.+++  |+++|.+++|.||||+|||+|+++++..   .+++|+|++.  ++...          .    
T Consensus       104 ~~i~TGi~~LD~lLG--Gi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~----------~----  164 (331)
T 2vhj_A          104 GELVGCSPVVAEFGG--HRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLS----------G----  164 (331)
T ss_dssp             TTCCSBCCEEEEETT--EEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSST----------T----
T ss_pred             hccccCcHHHHHHhC--CCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhh----------h----
Confidence            347899999999995  9999999999999999999999999886   4556788887  33211          0    


Q ss_pred             ecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccc
Q 024152          176 LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV  255 (271)
Q Consensus       176 ~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql  255 (271)
                       +. .+.++.+..+.....+.+  +++||+++.+.+...-...+|     ...+.+.+.++.|..++++.+++++++++.
T Consensus       165 -~~-~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G-----~v~~~lrqlL~~L~~~~k~~gvtVIlttnp  235 (331)
T 2vhj_A          165 -YN-TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSG-----GISRGAFDLLSDIGAMAASRGCVVIASLNP  235 (331)
T ss_dssp             -CB-CCHHHHHHHHHHHHHHCS--EEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred             -hh-cCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccc-----hHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence             01 456666665555554444  999999998864221101111     223557788888888899999999987653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.48  E-value=2.5e-14  Score=128.97  Aligned_cols=138  Identities=15%  Similarity=0.120  Sum_probs=95.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...+++|.|. ++..... .+...+.+++.+|+..+++.+++.+++.+.....
T Consensus        22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~  100 (348)
T 3d31_A           22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK  100 (348)
T ss_dssp             EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred             EEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE-ECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence            5779999999999999999999999999999988855 4443221 2234567999999998888899999988754432


Q ss_pred             hcCC-------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhhc
Q 024152          194 RSGS-------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSLS  245 (271)
Q Consensus       194 ~~~~-------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake~  245 (271)
                      ....       ++.+-++.+.... ..+++  .|++||...++++                     ..+...|+++.++.
T Consensus       101 ~~~~~~~v~~~l~~~~L~~~~~~~-~~~LS--gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~  177 (348)
T 3d31_A          101 KIKDPKRVLDTARDLKIEHLLDRN-PLTLS--GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN  177 (348)
T ss_dssp             CCCCHHHHHHHHHHTTCTTTTTSC-GGGSC--HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc
Confidence            1110       0011111111111 12233  4899999999987                     23445666667788


Q ss_pred             CcEEEEEcccc
Q 024152          246 QTILIFINQVF  256 (271)
Q Consensus       246 ~~~Vi~~sql~  256 (271)
                      ++|+|+++|-.
T Consensus       178 g~tii~vTHd~  188 (348)
T 3d31_A          178 KLTVLHITHDQ  188 (348)
T ss_dssp             TCEEEEEESCH
T ss_pred             CCEEEEEeCCH
Confidence            99999999975

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.48  E-value=7.8e-14  Score=119.26  Aligned_cols=140  Identities=16%  Similarity=0.214  Sum_probs=92.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH-H----HHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP-S----LAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~-~----~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|+||||||||||++.+++...+..|.|.+.+.+.. ... .    +.+.+++.+|+..+++..++.+++.+
T Consensus        27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~  106 (235)
T 3tif_A           27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL  106 (235)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHH
Confidence            57799999999999999999999999999999998554432211 111 1    23469999999888888899888765


Q ss_pred             HHHHHhcCC-------------ccEEEEcc-hhhhcCCCccCCccchhhHHHHHHHH---------------------HH
Q 024152          189 VDTLIRSGS-------------VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLM---------------------SQ  233 (271)
Q Consensus       189 ~~~l~~~~~-------------~~lvvID~-l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~  233 (271)
                      .........             ++.+-++. +.... ..+++  .|++||...++++                     ..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~  183 (235)
T 3tif_A          107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-PNQLS--GGQQQRVAIARALANNPPIILADQPTWALDSKTGEK  183 (235)
T ss_dssp             HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            432110000             00000111 10111 12333  4899999999998                     23


Q ss_pred             HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      +...|+++.++.++|||+++|-..
T Consensus       184 i~~~l~~l~~~~g~tvi~vtHd~~  207 (235)
T 3tif_A          184 IMQLLKKLNEEDGKTVVVVTHDIN  207 (235)
T ss_dssp             HHHHHHHHHHHHCCEEEEECSCHH
T ss_pred             HHHHHHHHHHHcCCEEEEEcCCHH
Confidence            444556666677999999999753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.46  E-value=1.1e-14  Score=131.56  Aligned_cols=139  Identities=18%  Similarity=0.171  Sum_probs=95.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...+++|.|.+ +.+... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus        37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i-~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~  115 (355)
T 1z47_A           37 QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI-GGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK  115 (355)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE-TTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE-CCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence            56799999999999999999999999999999888554 433221 1223457899999998888899999887653321


Q ss_pred             hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHH
Q 024152          194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSL  242 (271)
Q Consensus       194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~la  242 (271)
                      ...          -++.+-++.+.... ..+++  .|++||+..++++                     ..+...|+++.
T Consensus       116 ~~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  192 (355)
T 1z47_A          116 RVPKDEMDARVRELLRFMRLESYANRF-PHELS--GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH  192 (355)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhcCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            000          01111122222111 12334  4899999999998                     23444566667


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.++|||+++|-..
T Consensus       193 ~~~g~tvi~vTHd~~  207 (355)
T 1z47_A          193 DEMGVTSVFVTHDQE  207 (355)
T ss_dssp             HHHTCEEEEECSCHH
T ss_pred             HhcCCEEEEECCCHH
Confidence            778999999999753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.46  E-value=1.5e-14  Score=131.07  Aligned_cols=139  Identities=15%  Similarity=0.194  Sum_probs=94.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...+++|.|. ++..... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus        25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  103 (362)
T 2it1_A           25 KIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY-FDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR  103 (362)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred             EECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEE-ECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            5779999999999999999999999999999988855 4433221 1122457899999998888899999887643321


Q ss_pred             hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHH
Q 024152          194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSL  242 (271)
Q Consensus       194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~la  242 (271)
                      ...          -++.+-++.+.... ..+++  .|++||+..++++                     ..+...|+++.
T Consensus       104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  180 (362)
T 2it1_A          104 KAPREEIDKKVREVAKMLHIDKLLNRY-PWQLS--GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ  180 (362)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchHhhCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence            000          01111112211111 12333  3899999999998                     23444666667


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.++|+|+++|-..
T Consensus       181 ~~~g~tvi~vTHd~~  195 (362)
T 2it1_A          181 KELGITTVYVTHDQA  195 (362)
T ss_dssp             HHHTCEEEEEESCHH
T ss_pred             HhCCCEEEEECCCHH
Confidence            778999999999753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.44  E-value=2.5e-14  Score=130.04  Aligned_cols=138  Identities=12%  Similarity=0.157  Sum_probs=88.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...+++|.|. ++.+... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus        33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  111 (372)
T 1v43_A           33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK  111 (372)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEE-ECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            5779999999999999999999999999999988855 4433221 1122467899999988888889988876531110


Q ss_pred             -------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHH
Q 024152          194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSL  242 (271)
Q Consensus       194 -------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~la  242 (271)
                             .   ..-++.+-++.+.... ..++++  |++||+..++++                     ..+...|+++.
T Consensus       112 ~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  188 (372)
T 1v43_A          112 KFPKDEIDKRVRWAAELLQIEELLNRY-PAQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ  188 (372)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCGGGTTSC-TTTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence                   0   0001111122222222 234444  899999999998                     23444566667


Q ss_pred             hhcCcEEEEEcccc
Q 024152          243 SLSQTILIFINQVF  256 (271)
Q Consensus       243 ke~~~~Vi~~sql~  256 (271)
                      ++.++|+|+++|-.
T Consensus       189 ~~~g~tvi~vTHd~  202 (372)
T 1v43_A          189 QKLKVTTIYVTHDQ  202 (372)
T ss_dssp             HHHTCEEEEEESCH
T ss_pred             HhCCCEEEEEeCCH
Confidence            77899999999975

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.44  E-value=1.6e-14  Score=130.76  Aligned_cols=139  Identities=15%  Similarity=0.138  Sum_probs=93.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...+++|.|. ++.+... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus        25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  103 (359)
T 2yyz_A           25 EVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY-FDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR  103 (359)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred             EEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEE-ECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            5779999999999999999999999999999988855 4433221 1122457899999998888889999887532110


Q ss_pred             ----hcC------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHH
Q 024152          194 ----RSG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSL  242 (271)
Q Consensus       194 ----~~~------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~la  242 (271)
                          .+.      -++.+-++.+.... ..+++  .|++||+..++++                     ..+...|+++.
T Consensus       104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LS--gGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  180 (359)
T 2yyz_A          104 RISKDEVEKRVVEIARKLLIDNLLDRK-PTQLS--GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ  180 (359)
T ss_dssp             CSHHHHTTHHHHHHHHHTTCGGGTTSC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence                000      01111122222211 12344  3899999999988                     23444566667


Q ss_pred             hhcCcEEEEEccccc
Q 024152          243 SLSQTILIFINQVFS  257 (271)
Q Consensus       243 ke~~~~Vi~~sql~~  257 (271)
                      ++.++|+|+++|-..
T Consensus       181 ~~~g~tvi~vTHd~~  195 (359)
T 2yyz_A          181 QELGITSVYVTHDQA  195 (359)
T ss_dssp             HHHCCEEEEEESCHH
T ss_pred             HhcCCEEEEEcCCHH
Confidence            778999999999753

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=99.43  E-value=1.6e-12  Score=112.52  Aligned_cols=73  Identities=11%  Similarity=0.078  Sum_probs=64.4

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCC
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTE  172 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~  172 (271)
                      .++||++.||.+++ ||+++|.+++|.|.||+|||||+.+++...+..+.+++|++.+++...  ..++.+|++++
T Consensus         2 ~i~tGi~~LD~~l~-GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~   76 (260)
T 3bs4_A            2 SLSWEIEELDREIG-KIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVI   76 (260)
T ss_dssp             CBCCSSHHHHHHHC-CBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHH
T ss_pred             cCccCcHHHHHHhC-CCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHH
Confidence            37899999999999 999999999999999999999999999999999889999999887765  34556777654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.42  E-value=6e-14  Score=121.95  Aligned_cols=140  Identities=14%  Similarity=0.122  Sum_probs=89.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CC-HHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LD-PSLAETIGVKTENLLLAQPDCGEQALSLVD  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~  190 (271)
                      -+++|++++|.||||||||||++.+++...+..|.|.|.+.+-.   .. ..+++.+++.+|+..++...++.+++.+..
T Consensus        46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~  125 (263)
T 2olj_A           46 HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP  125 (263)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred             EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence            57799999999999999999999999999988888655332211   11 234667999999987777788988876632


Q ss_pred             -HHHhcCCcc--EEEEcch------hhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152          191 -TLIRSGSVD--VVVVDSV------AALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH  240 (271)
Q Consensus       191 -~l~~~~~~~--lvvID~l------~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~  240 (271)
                       ... .....  .-.++.+      .....+....-+.|++||...++++.                     .+...|++
T Consensus       126 ~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~  204 (263)
T 2olj_A          126 MKVR-KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ  204 (263)
T ss_dssp             HHTS-CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHc-CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence             110 00000  0001111      11111111122348889999888872                     33445555


Q ss_pred             HHhhcCcEEEEEcccc
Q 024152          241 SLSLSQTILIFINQVF  256 (271)
Q Consensus       241 lake~~~~Vi~~sql~  256 (271)
                      +.++ +++||+++|..
T Consensus       205 l~~~-g~tvi~vtHd~  219 (263)
T 2olj_A          205 LANE-GMTMVVVTHEM  219 (263)
T ss_dssp             HHHT-TCEEEEECSCH
T ss_pred             HHhC-CCEEEEEcCCH
Confidence            5555 99999999975

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.42  E-value=2e-14  Score=130.81  Aligned_cols=138  Identities=13%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.||||||||||++.|++...+++|.|.+ +.+...       .....+.+|+.+|+..+++.+++.+++.
T Consensus        25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i-~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~  103 (372)
T 1g29_1           25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA  103 (372)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE-TTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred             EEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE-CCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHH
Confidence            56799999999999999999999999999998888554 432211       1122456899999998888899999887


Q ss_pred             HHHHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      +..+....          .-++.+-++.+.... ..+++  .|++||+..++++.                     .+..
T Consensus       104 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~  180 (372)
T 1g29_1          104 FPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-PRELS--GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA  180 (372)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-GGGSC--HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence            75432100          001111122221111 12344  48999999999983                     3444


Q ss_pred             HHHHHHhhcCcEEEEEcccc
Q 024152          237 KLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~  256 (271)
                      .|+++.++.++|+|+++|-.
T Consensus       181 ~l~~l~~~~g~tvi~vTHd~  200 (372)
T 1g29_1          181 ELKKLQRQLGVTTIYVTHDQ  200 (372)
T ss_dssp             HHHHHHHHHTCEEEEEESCH
T ss_pred             HHHHHHHhcCCEEEEECCCH
Confidence            56666777899999999975

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.41  E-value=8.4e-14  Score=120.97  Aligned_cols=138  Identities=14%  Similarity=0.133  Sum_probs=89.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-----------CC----HHHHHHcCCcCCcceecCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-----------LD----PSLAETIGVKTENLLLAQP  179 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-----------~~----~~~~~~~g~~~~~~~~~~~  179 (271)
                      -+++|++++|.||||||||||++.+++...+..|.|.|.+.+..           ..    ..+++.+++.+|+..++..
T Consensus        28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~  107 (262)
T 1b0u_A           28 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH  107 (262)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCC
Confidence            57799999999999999999999999999998888655432211           11    1345679999999877777


Q ss_pred             CCHHHHHHHHH-HHHh------c----CCccEEEEcch-hhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152          180 DCGEQALSLVD-TLIR------S----GSVDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMS---------------  232 (271)
Q Consensus       180 ~~~~e~~~~~~-~l~~------~----~~~~lvvID~l-~~~~~~~~l~~~~g~~~~~~~~~~l~---------------  232 (271)
                      .++.+++.+.. ....      .    .-+..+-++.. .... ...++  .|++||...++++.               
T Consensus       108 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~~LS--gGq~qRv~lAraL~~~p~lllLDEPts~L  184 (262)
T 1b0u_A          108 MTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-PVHLS--GGQQQRVSIARALAMEPDVLLFDEPTSAL  184 (262)
T ss_dssp             SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-GGGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred             CcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            88988876632 1100      0    00011111111 1111 12333  48999999999883               


Q ss_pred             ------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 ------QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 ------~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                            .+...|+.+.++ +.+||+++|..
T Consensus       185 D~~~~~~~~~~l~~l~~~-g~tvi~vtHd~  213 (262)
T 1b0u_A          185 DPELVGEVLRIMQQLAEE-GKTMVVVTHEM  213 (262)
T ss_dssp             CHHHHHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             CHHHHHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence                  233445555444 99999999975

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.40  E-value=1.4e-14  Score=131.02  Aligned_cols=139  Identities=17%  Similarity=0.173  Sum_probs=93.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC------CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------DPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~------~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||||||||++.|++...++.|.|.+ +.+...      .....+.+++.+|+..+++.+++.+++.+
T Consensus        27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i-~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~  105 (353)
T 1oxx_K           27 NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF-DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF  105 (353)
T ss_dssp             EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE-TTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-CCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence            57799999999999999999999999999998888554 432211      11234568999999888888899988765


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~  237 (271)
                      ..+...          ..-++.+-++.+.... ..+++  .|++||+..++++                     .++...
T Consensus       106 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-~~~LS--GGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~  182 (353)
T 1oxx_K          106 PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-PRELS--GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL  182 (353)
T ss_dssp             GGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence            321100          0001111122221111 12334  3899999999988                     234456


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |+++.++.++|+|+++|-..
T Consensus       183 l~~l~~~~g~tvi~vTHd~~  202 (353)
T 1oxx_K          183 VKEVQSRLGVTLLVVSHDPA  202 (353)
T ss_dssp             HHHHHHHHCCEEEEEESCHH
T ss_pred             HHHHHHhcCCEEEEEeCCHH
Confidence            66667778999999999753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.39  E-value=2e-13  Score=115.89  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=88.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH----HH-HHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP----SL-AETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~----~~-~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.||||||||||++.+++...+..|.|.| +.....  ..    .+ .+.+++.+|+..++...++.+++.
T Consensus        26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~  104 (224)
T 2pcj_A           26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL-EGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI  104 (224)
T ss_dssp             EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE-TTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH
Confidence            56799999999999999999999999999998888655 433221  11    12 367999999988777788888876


Q ss_pred             HHHHHHhc------CC----ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLIRS------GS----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~~~------~~----~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      +.......      ..    +..+-++...... ...++  .|++|+...++++.                     ....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~  181 (224)
T 2pcj_A          105 VPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK-PYELS--GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD  181 (224)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSC--HHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence            54322100      00    0000011111111 12233  38888888888872                     3334


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|+.++++ +.+||+++|...
T Consensus       182 ~l~~l~~~-g~tvi~vtHd~~  201 (224)
T 2pcj_A          182 IFLKINEG-GTSIVMVTHERE  201 (224)
T ss_dssp             HHHHHHHT-TCEEEEECSCHH
T ss_pred             HHHHHHHC-CCEEEEEcCCHH
Confidence            45555555 999999999743

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.39  E-value=9.2e-14  Score=121.49  Aligned_cols=139  Identities=17%  Similarity=0.188  Sum_probs=87.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C----HHHHHHcCCcCCcce-ecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D----PSLAETIGVKTENLL-LAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~----~~~~~~~g~~~~~~~-~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||||||||++.+++...+.+|.|.+ +++... .    ..+++.+|+.+|+.. .....++.+++.+
T Consensus        30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~-~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~  108 (275)
T 3gfo_A           30 NIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF-DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF  108 (275)
T ss_dssp             EEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE-TTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE-CCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHH
Confidence            57799999999999999999999999999999888554 443221 1    134667999999762 2235678777665


Q ss_pred             HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHH
Q 024152          189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRK  237 (271)
Q Consensus       189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~  237 (271)
                      ......          ..-++.+-++.+.... ...++  .|++||...++++                     ..+...
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--gGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~  185 (275)
T 3gfo_A          109 GAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP-THCLS--FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL  185 (275)
T ss_dssp             HHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB-GGGSC--HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence            432110          0000111112211111 12333  3888888888887                     234445


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |+++.++.|+|||+++|...
T Consensus       186 l~~l~~~~g~tvi~vtHdl~  205 (275)
T 3gfo_A          186 LVEMQKELGITIIIATHDID  205 (275)
T ss_dssp             HHHHHHHHCCEEEEEESCCS
T ss_pred             HHHHHhhCCCEEEEEecCHH
Confidence            55555355999999999764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.38  E-value=2.4e-13  Score=117.71  Aligned_cols=138  Identities=13%  Similarity=0.149  Sum_probs=89.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.+++...+..|.|.+.+.+.... ..+++.+++.+|+..++...++.+++.+.....
T Consensus        37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~  116 (256)
T 1vpl_A           37 EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY  116 (256)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc
Confidence            5779999999999999999999999999999888865543221111 244567899999887777778888876643221


Q ss_pred             hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      ...          -+..+-++...... ...++  .|++||...++++.                     .+...|..+.
T Consensus       117 ~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~  193 (256)
T 1vpl_A          117 ASSSSEIEEMVERATEIAGLGEKIKDR-VSTYS--KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS  193 (256)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCC--HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHCCCchHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence            000          01111111111111 12333  38888888888872                     2333444443


Q ss_pred             hhcCcEEEEEcccc
Q 024152          243 SLSQTILIFINQVF  256 (271)
Q Consensus       243 ke~~~~Vi~~sql~  256 (271)
                       +.+.+||+++|..
T Consensus       194 -~~g~tiiivtHd~  206 (256)
T 1vpl_A          194 -QEGLTILVSSHNM  206 (256)
T ss_dssp             -HTTCEEEEEECCH
T ss_pred             -hCCCEEEEEcCCH
Confidence             4589999999965

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.38  E-value=2.9e-13  Score=117.78  Aligned_cols=139  Identities=19%  Similarity=0.201  Sum_probs=89.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      -+++|++++|+||||||||||++.+++...+.+|.|.|.+.+-.  ....+++.+++.+|...+....++.+++.+....
T Consensus        33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  112 (266)
T 4g1u_C           33 HIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP  112 (266)
T ss_dssp             EEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh
Confidence            56799999999999999999999999999999998655432211  1235567789999987776677888776543211


Q ss_pred             HhcCC--------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------------HHHH
Q 024152          193 IRSGS--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------------ALRK  237 (271)
Q Consensus       193 ~~~~~--------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------------~~r~  237 (271)
                      .....        +..+-++.+.... ...++  .|++||...++++..                           +...
T Consensus       113 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~  189 (266)
T 4g1u_C          113 YGGSQDRQALQQVMAQTDCLALAQRD-YRVLS--GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL  189 (266)
T ss_dssp             SCSTTHHHHHHHHHHHTTCSTTTTSB-GGGCC--HHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHcCChhHhcCC-cccCC--HHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHH
Confidence            00000        0000011111111 12233  388888888888764                           2334


Q ss_pred             HHHHHhhcCcEEEEEcccc
Q 024152          238 LSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~  256 (271)
                      |+++.++.+++||+++|..
T Consensus       190 l~~l~~~~~~tvi~vtHdl  208 (266)
T 4g1u_C          190 LRQLTRQEPLAVCCVLHDL  208 (266)
T ss_dssp             HHHHHHHSSEEEEEECSCH
T ss_pred             HHHHHHcCCCEEEEEEcCH
Confidence            5555666788999999975

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.36  E-value=2.6e-13  Score=116.39  Aligned_cols=133  Identities=11%  Similarity=0.117  Sum_probs=87.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH---
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT---  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~---  191 (271)
                      -+++ ++++|.||||||||||++.+++...+..|.|.+.+.+........+.+++.+|+..++...++.+++.+...   
T Consensus        21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~   99 (240)
T 2onk_A           21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE   99 (240)
T ss_dssp             EECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred             EECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence            5779 999999999999999999999999998888655332211111224568899998877777788887654211   


Q ss_pred             ----------HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152          192 ----------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH  240 (271)
Q Consensus       192 ----------l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~  240 (271)
                                +....+     ++.+.... ...++  .|++||...++++.                     .....|..
T Consensus       100 ~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LS--gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~  171 (240)
T 2onk_A          100 RVERDRRVREMAEKLG-----IAHLLDRK-PARLS--GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF  171 (240)
T ss_dssp             HHHHHHHHHHHHHTTT-----CTTTTTCC-GGGSC--HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHcC-----CHHHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                      111111     11111111 12233  48899999998882                     34445555


Q ss_pred             HHhhcCcEEEEEcccc
Q 024152          241 SLSLSQTILIFINQVF  256 (271)
Q Consensus       241 lake~~~~Vi~~sql~  256 (271)
                      ++++.+.+||+++|..
T Consensus       172 l~~~~g~tvi~vtHd~  187 (240)
T 2onk_A          172 VQREFDVPILHVTHDL  187 (240)
T ss_dssp             HHHHHTCCEEEEESCH
T ss_pred             HHHhcCCEEEEEeCCH
Confidence            5566799999999975

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.34  E-value=2.7e-13  Score=114.31  Aligned_cols=138  Identities=20%  Similarity=0.191  Sum_probs=88.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+++|++++|.||||+|||||++.+++...+..|.|.+ +.....  .+.+.+++.+|+..++...++.+++.+......
T Consensus        31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~-~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~  107 (214)
T 1sgw_A           31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY-NGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG  107 (214)
T ss_dssp             EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE-TTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-CCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence            56799999999999999999999999999888888655 432221  245678999998877777788888776533211


Q ss_pred             cCCccEEEEcchhhhc-----CCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcE
Q 024152          195 SGSVDVVVVDSVAALV-----PKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTI  248 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~-----~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~  248 (271)
                      . ....-.++.+....     .+....-+.|++|+...++++.                     .....|..+.+ .+.+
T Consensus       108 ~-~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t  185 (214)
T 1sgw_A          108 V-KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGI  185 (214)
T ss_dssp             C-CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSE
T ss_pred             C-chHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCE
Confidence            0 00000011111111     1111122348888888888872                     33344444443 4899


Q ss_pred             EEEEccccc
Q 024152          249 LIFINQVFS  257 (271)
Q Consensus       249 Vi~~sql~~  257 (271)
                      ||+++|...
T Consensus       186 iiivtHd~~  194 (214)
T 1sgw_A          186 VIISSREEL  194 (214)
T ss_dssp             EEEEESSCC
T ss_pred             EEEEeCCHH
Confidence            999999764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.33  E-value=6.8e-13  Score=114.85  Aligned_cols=74  Identities=20%  Similarity=0.163  Sum_probs=56.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C--HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D--PSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||||||||++.+++...+.+|.|.+.+..-.. .  ..+.+.+++.+|+..++...++.|++.+
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~  105 (257)
T 1g6h_A           29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI  105 (257)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHG
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHH
Confidence            577999999999999999999999999999988886553322111 1  1234568999998777766788877654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.32  E-value=1.3e-12  Score=113.67  Aligned_cols=140  Identities=15%  Similarity=0.139  Sum_probs=86.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc-eecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~-~~~~~~~~~e~~~~~~~l~  193 (271)
                      -+++|++++|.||||||||||++.|++...+.+|.|.+ +........+++.+++.+|+. ..+...++.+++.+.....
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~-~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~  107 (266)
T 2yz2_A           29 VINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY-DGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF  107 (266)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE-TTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc
Confidence            57799999999999999999999999999888888554 433221113445689999984 3444578888776532110


Q ss_pred             -hcCCccEEEEcchh--------hhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHh
Q 024152          194 -RSGSVDVVVVDSVA--------ALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLS  243 (271)
Q Consensus       194 -~~~~~~lvvID~l~--------~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lak  243 (271)
                       ...... -.++.+.        ....+....-+.|++||...++++.                     .+...|+++.+
T Consensus       108 ~~~~~~~-~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~  186 (266)
T 2yz2_A          108 YPDRDPV-PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT  186 (266)
T ss_dssp             CTTSCSH-HHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHH-HHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence             000000 0011111        1111111122348899999998872                     33445555555


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      + +.+||+++|...
T Consensus       187 ~-g~tii~vtHd~~  199 (266)
T 2yz2_A          187 L-GKTVILISHDIE  199 (266)
T ss_dssp             T-TCEEEEECSCCT
T ss_pred             c-CCEEEEEeCCHH
Confidence            5 999999999753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.30  E-value=4.8e-13  Score=114.70  Aligned_cols=140  Identities=14%  Similarity=0.154  Sum_probs=87.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CH-HH-HHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DP-SL-AETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|.||||+|||||++.+++...+..|.|.+.+..... .. .+ .+.+++.+|+..++...++.|++.+...
T Consensus        28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~  107 (240)
T 1ji0_A           28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY  107 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence            577999999999999999999999999999988886553322111 11 22 3348999998877777788887765321


Q ss_pred             HHhcCC-----ccEEEEcc---hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          192 LIRSGS-----VDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       192 l~~~~~-----~~lvvID~---l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      ......     +.. +++.   +.....+....-+.|++|+...++++.                     .+...|+++.
T Consensus       108 ~~~~~~~~~~~~~~-~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~  186 (240)
T 1ji0_A          108 NRKDKEGIKRDLEW-IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN  186 (240)
T ss_dssp             TCCCSSHHHHHHHH-HHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHH-HHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            000000     000 0111   111111111222348899999888872                     2333444444


Q ss_pred             hhcCcEEEEEcccc
Q 024152          243 SLSQTILIFINQVF  256 (271)
Q Consensus       243 ke~~~~Vi~~sql~  256 (271)
                      + .+++||+++|..
T Consensus       187 ~-~g~tvi~vtHd~  199 (240)
T 1ji0_A          187 Q-EGTTILLVEQNA  199 (240)
T ss_dssp             H-TTCCEEEEESCH
T ss_pred             H-CCCEEEEEecCH
Confidence            3 689999999975

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.28  E-value=1.6e-12  Score=113.47  Aligned_cols=139  Identities=20%  Similarity=0.204  Sum_probs=86.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|.||||||||||++.|++...+..|.|.| +....   ....+++.+++.+|+..++. .++.+++.+...
T Consensus        41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~-~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~  118 (271)
T 2ixe_A           41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL-DGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLT  118 (271)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE-TTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCS
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE-CCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcc
Confidence            57799999999999999999999999999998888554 43221   11345677999999887765 488877654210


Q ss_pred             -------H---HhcCCccEEEEcc----hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          192 -------L---IRSGSVDVVVVDS----VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       192 -------l---~~~~~~~lvvID~----l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                             .   .....+.- +++.    +.....+....-+.|++||...++++.                     .+..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~-~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~  197 (271)
T 2ixe_A          119 RTPTMEEITAVAMESGAHD-FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR  197 (271)
T ss_dssp             SCCCHHHHHHHHHHHTCHH-HHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHhHHH-HHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence                   0   00000000 0110    111111111122348999999999882                     2333


Q ss_pred             HHHHHHhhcCcEEEEEcccc
Q 024152          237 KLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~  256 (271)
                      .|+.+.++.+++||+++|..
T Consensus       198 ~l~~~~~~~g~tviivtHd~  217 (271)
T 2ixe_A          198 LLYESPEWASRTVLLITQQL  217 (271)
T ss_dssp             HHHHCTTTTTSEEEEECSCH
T ss_pred             HHHHHHhhcCCEEEEEeCCH
Confidence            44444445589999999975

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.27  E-value=2.3e-12  Score=111.04  Aligned_cols=138  Identities=18%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHH--HhhcCCeEEEEcCCCCC--CH-HH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~--~~~~~g~v~~~~~e~~~--~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||+|||||++.+++.  ..+.+|.|.| ++....  .. .+ ...+++.+|+..+++..++.+++.+
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  103 (250)
T 2d2e_A           25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL-DGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL  103 (250)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE-TTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE-CCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence            5779999999999999999999999997  5677887554 433221  11 22 2347889998887777888887765


Q ss_pred             HHHHHhcC--C-----------ccEEEEc-chhhhcCCCc-cCCccchhhHHHHHHHHHH--------------------
Q 024152          189 VDTLIRSG--S-----------VDVVVVD-SVAALVPKGE-LDGEMGDAHMAMQARLMSQ--------------------  233 (271)
Q Consensus       189 ~~~l~~~~--~-----------~~lvvID-~l~~~~~~~~-l~~~~g~~~~~~~~~~l~~--------------------  233 (271)
                      ........  .           +..+-++ .+.... ... +++  |++||...++++..                    
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~LSg--GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~  180 (250)
T 2d2e_A          104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-LNEGFSG--GEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK  180 (250)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-TTCC------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred             HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence            43211100  0           0000111 111111 122 444  89999999998832                    


Q ss_pred             -HHHHHHHHHhhcCcEEEEEccccc
Q 024152          234 -ALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       234 -~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                       ....|+++ ++.+.+||+++|...
T Consensus       181 ~l~~~l~~l-~~~g~tvi~vtHd~~  204 (250)
T 2d2e_A          181 VVARGVNAM-RGPNFGALVITHYQR  204 (250)
T ss_dssp             HHHHHHHHH-CSTTCEEEEECSSSG
T ss_pred             HHHHHHHHH-HhcCCEEEEEecCHH
Confidence             23334333 345899999999643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.27  E-value=8.7e-13  Score=113.55  Aligned_cols=72  Identities=24%  Similarity=0.303  Sum_probs=55.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||||||||++.|++...+..|.|.| +.....   ...+++.+++.+|+..++. .++.+++.+
T Consensus        31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~  105 (247)
T 2ff7_A           31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI-DGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISL  105 (247)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE-TTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhc
Confidence            56799999999999999999999999999998888554 432221   1345677999999877664 477776643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.26  E-value=2.1e-12  Score=111.61  Aligned_cols=63  Identities=17%  Similarity=0.206  Sum_probs=47.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||+|||||++.+++...+.+|.|.+           .+.+++.+|+..++...++.+++.+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-----------~~~i~~v~q~~~~~~~~tv~enl~~   89 (253)
T 2nq2_C           27 DLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-----------YQSIGFVPQFFSSPFAYSVLDIVLM   89 (253)
T ss_dssp             EEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-----------CSCEEEECSCCCCSSCCBHHHHHHG
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------eccEEEEcCCCccCCCCCHHHHHHH
Confidence            56799999999999999999999999999988887641           2245666666555555566665543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.25  E-value=1.3e-12  Score=114.41  Aligned_cols=139  Identities=19%  Similarity=0.203  Sum_probs=83.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CC-HHHHHHcCCcCCcceecC--CCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LD-PSLAETIGVKTENLLLAQ--PDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~~~--~~~~~e~~~~  188 (271)
                      -+++|++++|.||||||||||++.+++...+..|.|.|.+.+-.   .. ..+.+.+++.+|+.....  ..++.+++.+
T Consensus        43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~  122 (279)
T 2ihy_A           43 QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS  122 (279)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHh
Confidence            56799999999999999999999999999998888655432211   11 244566888888764322  3477776654


Q ss_pred             HHH----HHhcCC----------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152          189 VDT----LIRSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q  233 (271)
Q Consensus       189 ~~~----l~~~~~----------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~  233 (271)
                      ...    +.....          +..+-++.+.... ...++  .|++||...++++.                     .
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~  199 (279)
T 2ihy_A          123 GAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-IGYLS--TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES  199 (279)
T ss_dssp             TC---------CCHHHHHHHHHHHHHTTCGGGTTSB-GGGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred             hhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-hhhCC--HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHH
Confidence            210    000000          0000011111111 12233  38888888888873                     2


Q ss_pred             HHHHHHHHHhhcCcEE--EEEccccc
Q 024152          234 ALRKLSHSLSLSQTIL--IFINQVFS  257 (271)
Q Consensus       234 ~~r~L~~lake~~~~V--i~~sql~~  257 (271)
                      +...|+.+.++ +.+|  |+++|...
T Consensus       200 l~~~l~~l~~~-g~tv~~iivtHd~~  224 (279)
T 2ihy_A          200 LLSILDSLSDS-YPTLAMIYVTHFIE  224 (279)
T ss_dssp             HHHHHHHHHHH-CTTCEEEEEESCGG
T ss_pred             HHHHHHHHHHC-CCEEEEEEEecCHH
Confidence            33445555555 8899  99999753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.22  E-value=1.9e-11  Score=105.22  Aligned_cols=72  Identities=18%  Similarity=0.216  Sum_probs=55.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||+|||||++.+++...+. |.|.+ +....   ....+++.+++.+|+..++...++.+++.+
T Consensus        22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~   96 (249)
T 2qi9_C           22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQF-AGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTL   96 (249)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEE-TTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEE-CCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHH
Confidence            56799999999999999999999999999988 87554 43221   123456679999998776666677766543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.20  E-value=1.8e-11  Score=106.43  Aligned_cols=74  Identities=23%  Similarity=0.290  Sum_probs=54.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCC--CCH-HH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHA--LDP-SL-AETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~--~~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||||||||++.+++..  .+..|.|. ++....  ... .+ ...+++.+|+..++...++.+++..
T Consensus        42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~-~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~  120 (267)
T 2zu0_C           42 DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE-FKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT  120 (267)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE-ETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE-ECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHH
Confidence            57799999999999999999999999984  46778755 443321  111 22 2347888998877777788777654


Q ss_pred             H
Q 024152          189 V  189 (271)
Q Consensus       189 ~  189 (271)
                      .
T Consensus       121 ~  121 (267)
T 2zu0_C          121 A  121 (267)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.19  E-value=2.3e-12  Score=114.15  Aligned_cols=72  Identities=22%  Similarity=0.338  Sum_probs=56.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|+||||||||||++.+++...+..|.|. +++...   ....+++.+++.+|+..++. .++.+++.+
T Consensus        76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~-i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~  150 (306)
T 3nh6_A           76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR-IDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRY  150 (306)
T ss_dssp             EECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE-ETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHT
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE-ECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHh
Confidence            5789999999999999999999999999999989855 444322   12356778999999887764 466666543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.17  E-value=1.2e-12  Score=112.48  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.||||+|||||++.+++...+..|.|.+.+....  ....+++.+++.+|+..++. .++.+++.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~   97 (243)
T 1mv5_A           24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLT   97 (243)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHh
Confidence            57799999999999999999999999999999998655332111  11223456888888876654 36666554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.10  E-value=4.7e-11  Score=114.69  Aligned_cols=72  Identities=21%  Similarity=0.314  Sum_probs=56.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||+|||||++.+++...+++|.|.+ ++...   ....+++.+++.+|+..+++ .++.|++..
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~  439 (582)
T 3b5x_A          365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL-DGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAY  439 (582)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE-CCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhc
Confidence            67899999999999999999999999999999998655 43221   12345667899999887765 377776654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.08  E-value=6.6e-11  Score=102.50  Aligned_cols=71  Identities=20%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||||||||++.|++...+ .|.|. ++....   ....+++.+++.+|+..++. .++.+++.+
T Consensus        42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~-i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~  115 (260)
T 2ghi_A           42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK-IGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILY  115 (260)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE-ETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHT
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEE-ECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhc
Confidence            5779999999999999999999999998865 67654 444322   11245567899999877664 477776654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.07  E-value=1.6e-11  Score=104.35  Aligned_cols=62  Identities=15%  Similarity=0.278  Sum_probs=49.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|.||||||||||++.+++...+..|.|.+.+           .+++.+|+..+++. ++.+++.+
T Consensus        30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-----------~i~~v~q~~~~~~~-tv~enl~~   91 (229)
T 2pze_A           30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------RISFCSQFSWIMPG-TIKENIIF   91 (229)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----------CEEEECSSCCCCSB-CHHHHHHT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----------EEEEEecCCcccCC-CHHHHhhc
Confidence            5679999999999999999999999999999888865533           36777777666553 77766643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.06  E-value=6.9e-11  Score=107.99  Aligned_cols=70  Identities=20%  Similarity=0.245  Sum_probs=53.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.||||||||||++.|++... ..|.| +++.....  . ..+++.+++.+|+..++. .++.+++.
T Consensus        43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I-~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~  115 (390)
T 3gd7_A           43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEI-QIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLD  115 (390)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEE-EESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHC
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEE-EECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhh
Confidence            577999999999999999999999999877 77774 55544322  2 245678999999987765 47776653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.06  E-value=5.3e-11  Score=103.27  Aligned_cols=134  Identities=15%  Similarity=0.094  Sum_probs=81.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcC-CcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIG-VKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g-~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      -++ |++++|.||||+|||||++.+++.. +..|.|.+.+.+-..... .+.++ +.+|+..+  ..++.+++.+...+.
T Consensus        27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~  101 (263)
T 2pjz_A           27 EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK  101 (263)
T ss_dssp             EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT
T ss_pred             EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc
Confidence            688 9999999999999999999999999 988886553311100011 34678 88888765  678888776543321


Q ss_pred             hcCC-------ccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-----------------HHHHHHHHHHhhcCcE
Q 024152          194 RSGS-------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-----------------QALRKLSHSLSLSQTI  248 (271)
Q Consensus       194 ~~~~-------~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-----------------~~~r~L~~lake~~~~  248 (271)
                       ...       +..+-++ .+.... ...++  .|++||...++++.                 .....+..+.++...+
T Consensus       102 -~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS--gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~t  177 (263)
T 2pjz_A          102 -GLDRDLFLEMLKALKLGEEILRRK-LYKLS--AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKE  177 (263)
T ss_dssp             -CCCHHHHHHHHHHTTCCGGGGGSB-GGGSC--HHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSE
T ss_pred             -chHHHHHHHHHHHcCCChhHhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCc
Confidence             000       0000011 111111 12233  48899999998883                 2222333344444339


Q ss_pred             EEEEccccc
Q 024152          249 LIFINQVFS  257 (271)
Q Consensus       249 Vi~~sql~~  257 (271)
                      ||+++|...
T Consensus       178 viivtHd~~  186 (263)
T 2pjz_A          178 GILVTHELD  186 (263)
T ss_dssp             EEEEESCGG
T ss_pred             EEEEEcCHH
Confidence            999999753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.04  E-value=3.8e-11  Score=115.63  Aligned_cols=127  Identities=17%  Similarity=0.215  Sum_probs=79.2

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH-HHHHh
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTLIR  194 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~-~~l~~  194 (271)
                      +++|++++|.||||+|||||++.+++...+..|.|.+ .          ..+++.+|+.......++.+++... .....
T Consensus       379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~  447 (607)
T 3bk7_A          379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-D----------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLN  447 (607)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-C----------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-e----------eEEEEEecCccCCCCCcHHHHHHhhhccCCC
Confidence            5799999999999999999999999999888887543 1          2367777776554556676665443 11000


Q ss_pred             -----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcE
Q 024152          195 -----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTI  248 (271)
Q Consensus       195 -----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~  248 (271)
                           ..-+..+-++.+.... -..++  .|++|+...++++.                     ...+.|.+++++.+.+
T Consensus       448 ~~~~~~~~l~~~~l~~~~~~~-~~~LS--GGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t  524 (607)
T 3bk7_A          448 SNFYKTELLKPLGIIDLYDRN-VEDLS--GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT  524 (607)
T ss_dssp             CHHHHHHTHHHHTCTTTTTSB-GGGCC--HHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence                 0001111111111111 12233  37788888887772                     3444555556678999


Q ss_pred             EEEEcccc
Q 024152          249 LIFINQVF  256 (271)
Q Consensus       249 Vi~~sql~  256 (271)
                      ||+++|-.
T Consensus       525 vi~vsHd~  532 (607)
T 3bk7_A          525 ALVVEHDV  532 (607)
T ss_dssp             EEEECSCH
T ss_pred             EEEEeCCH
Confidence            99999975

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.04  E-value=4.8e-11  Score=113.54  Aligned_cols=127  Identities=17%  Similarity=0.217  Sum_probs=78.0

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH-HHHHh
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTLIR  194 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~-~~l~~  194 (271)
                      +++|++++|+|+||+|||||++.|++...+..|.|.+ .          ..+++.+|+.......++.+++... .....
T Consensus       309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-~----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~  377 (538)
T 1yqt_A          309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-D----------LTVAYKPQYIKADYEGTVYELLSKIDASKLN  377 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-C----------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-C----------ceEEEEecCCcCCCCCcHHHHHHhhhccCCC
Confidence            5799999999999999999999999999888887543 1          1366777766544455666655433 11000


Q ss_pred             -----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhhcCcE
Q 024152          195 -----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSLSQTI  248 (271)
Q Consensus       195 -----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake~~~~  248 (271)
                           ..-+..+-+....... -..++  .|++|+...++++                     ..+...|..++++.+.+
T Consensus       378 ~~~~~~~~l~~~~l~~~~~~~-~~~LS--GGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t  454 (538)
T 1yqt_A          378 SNFYKTELLKPLGIIDLYDRE-VNELS--GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT  454 (538)
T ss_dssp             CHHHHHHTTTTTTCGGGTTSB-GGGCC--HHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHHHcCChhhhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence                 0001111111111110 12233  3777888777777                     23444555556678999


Q ss_pred             EEEEcccc
Q 024152          249 LIFINQVF  256 (271)
Q Consensus       249 Vi~~sql~  256 (271)
                      ||+++|-.
T Consensus       455 vi~vsHd~  462 (538)
T 1yqt_A          455 ALVVEHDV  462 (538)
T ss_dssp             EEEECSCH
T ss_pred             EEEEeCCH
Confidence            99999975

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.03  E-value=7.4e-11  Score=113.30  Aligned_cols=138  Identities=17%  Similarity=0.200  Sum_probs=86.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHH-
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVD-  190 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~-  190 (271)
                      -+++|++++|.||||+|||||++.+++...+++|.|. +++....   ...+++.+++.+|+..+++ .++.|++.... 
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~-~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~  442 (582)
T 3b60_A          365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL-MDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART  442 (582)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE-ETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE-ECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC
Confidence            5789999999999999999999999999999988854 4443221   2356677999999987765 47777765422 


Q ss_pred             ---------HHHhcCCccEEEEcc----hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          191 ---------TLIRSGSVDVVVVDS----VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       191 ---------~l~~~~~~~lvvID~----l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                               +.....++.- .++.    +..........-+.|++||...+|++.                     .+.+
T Consensus       443 ~~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~  521 (582)
T 3b60_A          443 EEYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA  521 (582)
T ss_dssp             SCCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence                     0011111100 0110    111111111122348999999999883                     2333


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .+.++. + ++|+|+++|-..
T Consensus       522 ~l~~~~-~-~~tvi~itH~~~  540 (582)
T 3b60_A          522 ALDELQ-K-NRTSLVIAHRLS  540 (582)
T ss_dssp             HHHHHH-T-TSEEEEECSCGG
T ss_pred             HHHHHh-C-CCEEEEEeccHH
Confidence            444433 3 899999999653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.00  E-value=3.2e-10  Score=96.80  Aligned_cols=61  Identities=20%  Similarity=0.373  Sum_probs=46.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.||||||||||++.+++...+..|.|.+.+           .+++.+|+..+ ...++.+++.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~~~-~~~tv~enl~   87 (237)
T 2cbz_A           27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-----------SVAYVPQQAWI-QNDSLRENIL   87 (237)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----------CEEEECSSCCC-CSEEHHHHHH
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----------EEEEEcCCCcC-CCcCHHHHhh
Confidence            5779999999999999999999999999999888865433           25666666543 2345555554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.00  E-value=1.9e-10  Score=109.37  Aligned_cols=37  Identities=30%  Similarity=0.505  Sum_probs=33.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV  151 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~  151 (271)
                      -+++|++++|+|+||||||||++.+++...+..|.|.
T Consensus       290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~  326 (538)
T 3ozx_A          290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT  326 (538)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE
T ss_pred             eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            3679999999999999999999999999999888764

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.98  E-value=2.5e-09  Score=90.37  Aligned_cols=115  Identities=12%  Similarity=0.115  Sum_probs=77.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      .+|.++.+.|++|+||||+++.++.++...+.+|+++..+...  ...+.+++|+......+   ....++.+.++....
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~---~~~~~i~~~i~~~~~   86 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV---ESAPEILNYIMSNSF   86 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE---SSTHHHHHHHHSTTS
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCcccccc---CCHHHHHHHHHHHhh
Confidence            4789999999999999999999999998888888888543221  11233445554444332   234566666655444


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ...+++|+||++|.+..                  .+.+.++.|   ++ .+++||++.+..
T Consensus        87 ~~~~dvViIDEaQ~l~~------------------~~ve~l~~L---~~-~gi~Vil~Gl~~  126 (223)
T 2b8t_A           87 NDETKVIGIDEVQFFDD------------------RICEVANIL---AE-NGFVVIISGLDK  126 (223)
T ss_dssp             CTTCCEEEECSGGGSCT------------------HHHHHHHHH---HH-TTCEEEEECCSB
T ss_pred             CCCCCEEEEecCccCcH------------------HHHHHHHHH---Hh-CCCeEEEEeccc
Confidence            45689999999998642                  111233333   44 499999999854

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.95  E-value=9.6e-11  Score=103.06  Aligned_cols=61  Identities=16%  Similarity=0.318  Sum_probs=47.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|.||||+|||||++.|++...+..|.|.+.+           .+++.+|+..++. .++.+++.
T Consensus        60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~~l~~-~tv~enl~  120 (290)
T 2bbs_A           60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------RISFCSQNSWIMP-GTIKENII  120 (290)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------CEEEECSSCCCCS-SBHHHHHH
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------EEEEEeCCCccCc-ccHHHHhh
Confidence            5679999999999999999999999999998888865432           3677777765554 36666654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.93  E-value=1.8e-09  Score=95.51  Aligned_cols=134  Identities=18%  Similarity=0.109  Sum_probs=78.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CH---HH--HHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DP---SL--AETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~---~~--~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      +|++++|+|||||||||++..+++...+++|+|.+.+.+...   ..   .+  ...+++.+|.....+..++.+.+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            789999999999999999999999999999998877654321   11   12  23356666654433223344554433


Q ss_pred             HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH----------------HHHHHHHHHHHhhcCcEEEEEc
Q 024152          190 DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM----------------SQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       190 ~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l----------------~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      ..    .+.+.+++|..........+-. ....++...++++                ......++.+.++.++++++++
T Consensus       181 ~~----~~~d~~llDt~G~~~~~~~~~~-eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivT  255 (304)
T 1rj9_A          181 KA----RGYDLLFVDTAGRLHTKHNLME-ELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVT  255 (304)
T ss_dssp             HH----HTCSEEEECCCCCCTTCHHHHH-HHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred             Hh----CCCCEEEecCCCCCCchHHHHH-HHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence            21    2456777885432210000000 0112222333322                1234455556667799999999


Q ss_pred             ccc
Q 024152          254 QVF  256 (271)
Q Consensus       254 ql~  256 (271)
                      |..
T Consensus       256 h~d  258 (304)
T 1rj9_A          256 KLD  258 (304)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            974

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.91  E-value=1.6e-09  Score=104.34  Aligned_cols=72  Identities=24%  Similarity=0.347  Sum_probs=56.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|+||||+|||||++.+++...+..|.|. +++...   ....+++.+++.+|+..+++ .++.|++..
T Consensus       377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~-~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~  451 (598)
T 3qf4_B          377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL-VDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKY  451 (598)
T ss_dssp             ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE-ETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE-ECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhc
Confidence            5889999999999999999999999999999988854 444322   22356778999999987764 477776653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.89  E-value=1.5e-09  Score=104.04  Aligned_cols=71  Identities=24%  Similarity=0.313  Sum_probs=55.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|+||||+|||||++.+++...+..|.|. +++...   ....+++.+++.+|+..+++. ++.|++.
T Consensus       363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~  436 (578)
T 4a82_A          363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL-IDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENIL  436 (578)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE-ETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHG
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE-ECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHh
Confidence            5789999999999999999999999999999988854 444322   223567789999998777654 6666653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.89  E-value=1.3e-09  Score=104.72  Aligned_cols=70  Identities=20%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|+||||+|||||++.+++...+.+|.|. +++....   ...+++.+++.+|+..+++. ++.|++
T Consensus       365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni  437 (587)
T 3qf4_A          365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE-VDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENL  437 (587)
T ss_dssp             EECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE-ESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-ECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHH
Confidence            5789999999999999999999999999999988854 5543322   23567789999998776643 555554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.89  E-value=8.1e-10  Score=97.68  Aligned_cols=42  Identities=24%  Similarity=0.336  Sum_probs=37.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      .+++|++++|+|+||+||||++..+++...+.+|+|.+.+.+
T Consensus        96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d  137 (302)
T 3b9q_A           96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD  137 (302)
T ss_dssp             CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence            356899999999999999999999999999999998777654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.86  E-value=1.5e-08  Score=94.69  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=60.7

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHH--HHHcCCcCCcceecCCCCHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSL--AETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~--~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      +.+|++++|+|+||+|||||+..|++.+.+.+|.|.+.+......      ..+  +..+++.++........++.+.+.
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~  369 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ  369 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence            678999999999999999999999999999999987776543221      112  344667666543332233444444


Q ss_pred             HHHHHHhcCCccEEEEcchhh
Q 024152          188 LVDTLIRSGSVDVVVVDSVAA  208 (271)
Q Consensus       188 ~~~~l~~~~~~~lvvID~l~~  208 (271)
                      .+.    ..+.++++||-...
T Consensus       370 ~a~----~~~~DvVLIDTaGr  386 (503)
T 2yhs_A          370 AAK----ARNIDVLIADTAGR  386 (503)
T ss_dssp             HHH----HTTCSEEEECCCCS
T ss_pred             HHH----hcCCCEEEEeCCCc
Confidence            432    24678888887544

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.86  E-value=1.7e-08  Score=90.12  Aligned_cols=132  Identities=18%  Similarity=0.159  Sum_probs=77.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCC--cCCcceecCCCCHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGV--KTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~--~~~~~~~~~~~~~~e~~~~  188 (271)
                      ++|++++|+|+||+||||++..+++...+.+|+|.+.+.+....      ..+++.+|+  .++.....+..++.+.+..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999988877543221      123556664  3443333322334455444


Q ss_pred             HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------------HHHHHHHHHHHhhcCcEEEEEcc
Q 024152          189 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM--------------SQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       189 ~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l--------------~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                      ...    .+.+.+++|..........+     ........+.+              ......++.+.++.++++++++|
T Consensus       207 ~~~----~~~d~vliDtaG~~~~~~~l-----~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTK  277 (328)
T 3e70_C          207 AKA----RGIDVVLIDTAGRSETNRNL-----MDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTK  277 (328)
T ss_dssp             HHH----HTCSEEEEEECCSCCTTTCH-----HHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             HHh----ccchhhHHhhccchhHHHHH-----HHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            332    24667778864332110000     00000111111              12333445556678999999999


Q ss_pred             ccc
Q 024152          255 VFS  257 (271)
Q Consensus       255 l~~  257 (271)
                      +-.
T Consensus       278 lD~  280 (328)
T 3e70_C          278 LDA  280 (328)
T ss_dssp             GGG
T ss_pred             cCC
Confidence            753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.86  E-value=1.7e-09  Score=97.67  Aligned_cols=41  Identities=22%  Similarity=0.291  Sum_probs=37.0

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      +++|++++|+|+||+||||++..+++...+.+|+|.+.+.+
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D  194 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD  194 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence            56899999999999999999999999999999998777654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.83  E-value=5.3e-10  Score=90.46  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALH  138 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~  138 (271)
                      -+++|++++|+|+||||||||++.
T Consensus         5 ~i~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            5 TIPELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEESSEEEEEECCTTSCHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHH
Confidence            367999999999999999999993

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.79  E-value=2.3e-08  Score=79.16  Aligned_cols=92  Identities=21%  Similarity=0.269  Sum_probs=63.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      .+ +|+.++|.|+||+|||||+..+++.+.+.+.+++|++.......                             .+. 
T Consensus        33 ~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------------------~~~-   81 (149)
T 2kjq_A           33 HK-HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------------------------DAA-   81 (149)
T ss_dssp             CC-CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------------------------GGG-
T ss_pred             hc-CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------------------------HHH-
Confidence            45 89999999999999999999999998876556788876543321                             111 


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcE-EEEEcccc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTI-LIFINQVF  256 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~-Vi~~sql~  256 (271)
                       .+++++++|.+..+.+         .     .++.+...+..+    .+.+.+ +|+++|..
T Consensus        82 -~~~~lLilDE~~~~~~---------~-----~~~~l~~li~~~----~~~g~~~iiits~~~  125 (149)
T 2kjq_A           82 -FEAEYLAVDQVEKLGN---------E-----EQALLFSIFNRF----RNSGKGFLLLGSEYT  125 (149)
T ss_dssp             -GGCSEEEEESTTCCCS---------H-----HHHHHHHHHHHH----HHHTCCEEEEEESSC
T ss_pred             -hCCCEEEEeCccccCh---------H-----HHHHHHHHHHHH----HHcCCcEEEEECCCC
Confidence             2578999999876532         1     123343444433    455777 88888854

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.76  E-value=3.7e-08  Score=79.77  Aligned_cols=112  Identities=20%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .+++|+.++|.||||+|||||+..+++.+.+..| .++|++....... +.....       .. ...  +.+   ..+ 
T Consensus        34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~-------~~-~~~--~~~---~~~-   98 (180)
T 3ec2_A           34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR-LKHLMD-------EG-KDT--KFL---KTV-   98 (180)
T ss_dssp             CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH-HHHHHH-------HT-CCS--HHH---HHH-
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-HHHHhc-------Cc-hHH--HHH---HHh-
Confidence            4557999999999999999999999999986555 6666653221111 111100       00 000  111   111 


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                        .+++++++|.+.....        ..    .....+.+.+.    ...+.++++|+++|.....
T Consensus        99 --~~~~llilDE~~~~~~--------~~----~~~~~l~~ll~----~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A           99 --LNSPVLVLDDLGSERL--------SD----WQRELISYIIT----YRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             --HTCSEEEEETCSSSCC--------CH----HHHHHHHHHHH----HHHHTTCEEEEECCCCSCC
T ss_pred             --cCCCEEEEeCCCCCcC--------CH----HHHHHHHHHHH----HHHHcCCCEEEEcCCChhH
Confidence              2588999999864321        11    11122222222    2345789999999987554

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.72  E-value=2.4e-08  Score=103.73  Aligned_cols=72  Identities=21%  Similarity=0.233  Sum_probs=56.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|+||||||||||++.+++...+.+|.| ++++...   ....+++.+++.+|+..++.. ++.|++.+
T Consensus       412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~  486 (1284)
T 3g5u_A          412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV-SIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRY  486 (1284)
T ss_dssp             EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE-EETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhc
Confidence            578999999999999999999999999999988874 4554322   223567789999999877754 77766654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.70  E-value=8.3e-09  Score=107.45  Aligned_cols=62  Identities=21%  Similarity=0.342  Sum_probs=51.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceec
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLA  177 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~  177 (271)
                      -+++|+.++|+||+|||||||+..+.+...+.+|. +++++...   ....+++.+++.+|++.++
T Consensus      1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF 1165 (1321)
T 4f4c_A         1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE-IFIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165 (1321)
T ss_dssp             EECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE-EEETTEETTTBCHHHHHTTEEEECSSCCCC
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE-EEECCEEhhhCCHHHHHhheEEECCCCEee
Confidence            58899999999999999999999999999999998 55665432   2247788899999986554

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.70  E-value=1.3e-07  Score=91.02  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=32.2

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY  149 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~  149 (271)
                      |.+.+|++++|+|+||+|||||++.|++...+.+|.
T Consensus       373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             CccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            457788999999999999999999999999887663

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.65  E-value=9.1e-08  Score=82.69  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=35.8

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcC
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDA  155 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~  155 (271)
                      +++|++++|+||||||||||++.+++...+. +|.+.+.+.
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~   62 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED   62 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence            5699999999999999999999999999887 888777654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.64  E-value=2.1e-08  Score=104.50  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceec
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLA  177 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~  177 (271)
                      -+++|++++|+||+|||||||+..+++...+.+|.| .+++..   .....+++.+++.+|+..++
T Consensus       440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I-~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf  504 (1321)
T 4f4c_A          440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI-TIDGVDVRDINLEFLRKNVAVVSQEPALF  504 (1321)
T ss_dssp             EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE-EETTEETTTSCHHHHHHHEEEECSSCCCC
T ss_pred             eecCCcEEEEEecCCCcHHHHHHHhccccccccCcc-cCCCccchhccHHHHhhcccccCCcceee
Confidence            688999999999999999999999999999999984 455432   22346778899999886554

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.63  E-value=4e-09  Score=98.38  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=41.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcCCCCCCHHHHHHcCCcCCcc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAEHALDPSLAETIGVKTENL  174 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~e~~~~~~~~~~~g~~~~~~  174 (271)
                      -+++|++++|.||||||||||++.+++...+.+| .+++++..      ..+.+++.+|..
T Consensus       134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------~~~~i~~vpq~~  188 (460)
T 2npi_A          134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------PQQPIFTVPGCI  188 (460)
T ss_dssp             HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------TTSCSSSCSSCC
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------ccCCeeeeccch
Confidence            3559999999999999999999999999999888 74455542      123455666655

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.62  E-value=2.7e-07  Score=87.69  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=31.2

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY  149 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~  149 (271)
                      +++|++++|+|+||||||||++.+++...++.|.
T Consensus        44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            5699999999999999999999999998887775

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.62  E-value=9.9e-09  Score=95.15  Aligned_cols=53  Identities=17%  Similarity=0.184  Sum_probs=45.0

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .+.||...||.+ -  -+.+|++++|.|+||+|||||++.|++...++.|.+.+++
T Consensus       140 ~~~tg~~vld~v-l--~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G  192 (438)
T 2dpy_A          140 VLDTGVRAINAL-L--TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG  192 (438)
T ss_dssp             BCCCSCHHHHHH-S--CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred             ecCCCceEEeee-E--EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence            445788899999 4  6999999999999999999999999999888777544443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.60  E-value=2.2e-08  Score=104.03  Aligned_cols=70  Identities=17%  Similarity=0.292  Sum_probs=52.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|+||||+|||||++.+++...+.+|.| ++++.....   +.+++.+++.+|+..++. .++.+++
T Consensus      1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi 1127 (1284)
T 3g5u_A         1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENI 1127 (1284)
T ss_dssp             EECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE-ESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHH
Confidence            578999999999999999999999999999998885 455433221   345667889998875543 3444443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.59  E-value=6.7e-08  Score=91.79  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=32.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC  150 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v  150 (271)
                      -.++|++++|+||||+|||||++.|++...++.|.+
T Consensus        21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            456999999999999999999999999988887764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.59  E-value=5e-08  Score=93.91  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC  150 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v  150 (271)
                      +++|++++|.||||+|||||++.|++...++.|.+
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            56999999999999999999999999999888864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.58  E-value=8.6e-08  Score=86.52  Aligned_cols=112  Identities=14%  Similarity=0.081  Sum_probs=65.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhc
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS  195 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~  195 (271)
                      .+|++++|+||||||||||++.+++...+. ++.++.+.......  .....++..|........+..+.+  ++.+  .
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~--~~~~~~~v~q~~~~~~~~~~~~~L--a~aL--~  194 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV--HESKKCLVNQREVHRDTLGFSEAL--RSAL--R  194 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC--CCCSSSEEEEEEBTTTBSCHHHHH--HHHT--T
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh--hhccccceeeeeeccccCCHHHHH--HHHh--h
Confidence            478899999999999999999999999887 56655544321111  000111222211111223444422  2222  3


Q ss_pred             CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       196 ~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .+++++++|.+...                    +.   ...+.+ +.+.|.+|++++|....
T Consensus       195 ~~PdvillDEp~d~--------------------e~---~~~~~~-~~~~G~~vl~t~H~~~~  233 (356)
T 3jvv_A          195 EDPDIILVGEMRDL--------------------ET---IRLALT-AAETGHLVFGTLHTTSA  233 (356)
T ss_dssp             SCCSEEEESCCCSH--------------------HH---HHHHHH-HHHTTCEEEEEESCSSH
T ss_pred             hCcCEEecCCCCCH--------------------HH---HHHHHH-HHhcCCEEEEEEccChH
Confidence            68999999997521                    11   111222 23569999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.53  E-value=5.2e-07  Score=86.84  Aligned_cols=34  Identities=29%  Similarity=0.323  Sum_probs=31.6

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY  149 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~  149 (271)
                      +++|++++|.||||+|||||++.+++...++.|.
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            5699999999999999999999999998888776

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.50  E-value=3.3e-08  Score=96.37  Aligned_cols=22  Identities=41%  Similarity=0.791  Sum_probs=20.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLA  136 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~  136 (271)
                      -+++|++++|+||||||||||+
T Consensus        40 ~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           40 EIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEETTSEEEEECSTTSSHHHHH
T ss_pred             EECCCCEEEEECCCCCCHHHHh
Confidence            5779999999999999999997

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.49  E-value=1.6e-07  Score=76.92  Aligned_cols=110  Identities=16%  Similarity=0.171  Sum_probs=63.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      +|.++.+.|++|+||||+++.++.++...+.+++++.......   ..+..+.|........   .+..+++..+     
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~---~~~~~~~~~~-----   73 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVI---ERPEEMRKYI-----   73 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEE---SSGGGGGGGC-----
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEE---CCHHHHHHHh-----
Confidence            5789999999999999999999998887777888775331110   0111122222221111   1222222111     


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ..+.++++||++|.+.+                     .....|..++++ +++|++.....+
T Consensus        74 ~~~~dvviIDE~Q~~~~---------------------~~~~~l~~l~~~-~~~Vi~~Gl~~~  114 (184)
T 2orw_A           74 EEDTRGVFIDEVQFFNP---------------------SLFEVVKDLLDR-GIDVFCAGLDLT  114 (184)
T ss_dssp             CTTEEEEEECCGGGSCT---------------------THHHHHHHHHHT-TCEEEEEEESBC
T ss_pred             cCCCCEEEEECcccCCH---------------------HHHHHHHHHHHC-CCCEEEEeeccc
Confidence            13578999999998742                     112233333555 999998877544

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.41  E-value=5.1e-07  Score=81.92  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=53.6

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      +++|++++|+||||+|||||+..+++...+. +|.|++++.....  .+....++.+|...-.......   ..++..+.
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~--~~~~~~~~v~Q~~~g~~~~~~~---~~l~~~L~  207 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--VFKHKKSIVNQREVGEDTKSFA---DALRAALR  207 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS--CCCCSSSEEEEEEBTTTBSCSH---HHHHHHTT
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh--hhccCceEEEeeecCCCHHHHH---HHHHHHhh
Confidence            5789999999999999999999999999887 7887777642211  1112233344311000111111   22222232


Q ss_pred             cCCccEEEEcchh
Q 024152          195 SGSVDVVVVDSVA  207 (271)
Q Consensus       195 ~~~~~lvvID~l~  207 (271)
                       .+++.+++|.+.
T Consensus       208 -~~pd~illdE~~  219 (372)
T 2ewv_A          208 -EDPDVIFVGEMR  219 (372)
T ss_dssp             -SCCSEEEESCCC
T ss_pred             -hCcCEEEECCCC
Confidence             479999999865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.40  E-value=4.6e-07  Score=80.05  Aligned_cols=75  Identities=16%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      .+|++++|.|+||||||||+..+++...  +.+|.|.+++.... ......+..++. +........+..+++..+..+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l  155 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL  155 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence            6899999999999999999999999988  78888777654322 222334556776 655555566888887766554

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.39  E-value=1.8e-07  Score=83.49  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +++|++++|+|+||+|||||++.+++...+..|.+.+-+
T Consensus       168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~  206 (330)
T 2pt7_A          168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  206 (330)
T ss_dssp             HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence            458999999999999999999999999988888755544

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.37  E-value=1.3e-07  Score=75.55  Aligned_cols=67  Identities=18%  Similarity=0.114  Sum_probs=44.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|.||||+|||||++.+++.. +..|.|.+.+ ...... .. ...+.+|+..++ ..++.+.+
T Consensus        29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g-~~i~~~-~~-~~~~~~q~~~l~-~ltv~e~l   95 (158)
T 1htw_A           29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT-YTLVEE-YN-IAGKMIYHFDLY-RLADPEEL   95 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT-TTCEEE-EE-ETTEEEEEEECT-TCSCTTHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC-Eeeeee-cc-CCCcceeccccc-cCCcHHHH
Confidence            57799999999999999999999999999 8878754332 221111 00 012566766666 45554433

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.37  E-value=7.7e-06  Score=72.18  Aligned_cols=89  Identities=18%  Similarity=0.166  Sum_probs=55.8

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCCCCHHHHHH-H
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALS-L  188 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~~~~~e~~~-~  188 (271)
                      ..+|++++|+|+||+||||++.++++.+.+.+++|.+++.+.....      .+....++..  +......+...+.. .
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~--~~~~s~~~~~~v~~~a  178 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDA  178 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE--EecCCccCHHHHHHHH
Confidence            3578999999999999999999999999998889888876532211      2333444432  11111122333211 1


Q ss_pred             HHHHHhcCCccEEEEcchh
Q 024152          189 VDTLIRSGSVDVVVVDSVA  207 (271)
Q Consensus       189 ~~~l~~~~~~~lvvID~l~  207 (271)
                      +.+. ...+++++++|...
T Consensus       179 l~~a-~~~~~dvvIiDtpg  196 (306)
T 1vma_A          179 VAHA-LARNKDVVIIDTAG  196 (306)
T ss_dssp             HHHH-HHTTCSEEEEEECC
T ss_pred             HHHH-HhcCCCEEEEECCC
Confidence            1111 23578999999754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.36  E-value=5.7e-08  Score=79.99  Aligned_cols=29  Identities=34%  Similarity=0.431  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGG  148 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g  148 (271)
                      |++++|.|+||+|||||+..+++... ..|
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G   29 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG   29 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence            68999999999999999999999988 666

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.35  E-value=8.5e-07  Score=89.13  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=25.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      -+++|++++|.||||+|||||++.|++
T Consensus       457 ~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          457 RLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            577999999999999999999999995

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.34  E-value=4.9e-07  Score=80.92  Aligned_cols=70  Identities=13%  Similarity=0.013  Sum_probs=50.8

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceec
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLA  177 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~  177 (271)
                      .|+.+.-  -+++|++++|.|+||+|||||++.+++...+.+|+|.+++.+....      ......+++.+|....+
T Consensus        44 ~l~~i~~--~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~  119 (337)
T 2qm8_A           44 LIDAVLP--QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF  119 (337)
T ss_dssp             HHHHHGG--GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred             HHHhCCc--ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence            4555543  5679999999999999999999999999999999988876432110      11234577777765444

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.34  E-value=2.8e-06  Score=77.49  Aligned_cols=118  Identities=18%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+++..=+++.||||+|||.|++.+|....   -+.+.++.......                ..-..+..+..+....+
T Consensus       178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~---~~f~~v~~s~l~sk----------------~vGese~~vr~lF~~Ar  238 (405)
T 4b4t_J          178 GIAQPKGVILYGPPGTGKTLLARAVAHHTD---CKFIRVSGAELVQK----------------YIGEGSRMVRELFVMAR  238 (405)
T ss_dssp             TCCCCCCEEEESCSSSSHHHHHHHHHHHHT---CEEEEEEGGGGSCS----------------STTHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEEeCCCCCCHHHHHHHHHHhhC---CCceEEEhHHhhcc----------------ccchHHHHHHHHHHHHH
Confidence            677777799999999999999999998764   23444443211110                01122333333333344


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                      ...+..++||.+..+.+...-....+..   ...+.+.+.+..+..+....++.||+.+.
T Consensus       239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~V~vIaATN  295 (405)
T 4b4t_J          239 EHAPSIIFMDEIDSIGSTRVEGSGGGDS---EVQRTMLELLNQLDGFETSKNIKIIMATN  295 (405)
T ss_dssp             HTCSEEEEEESSSCCTTSCSCSSSGGGG---HHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred             HhCCceEeeecchhhccCCCCCCCCCcH---HHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence            5679999999998876533222111111   22345566666665444445655665543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.33  E-value=1.7e-06  Score=70.31  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .++|.||||+|||||++.+++...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999885

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.33  E-value=2.7e-06  Score=74.79  Aligned_cols=103  Identities=18%  Similarity=0.131  Sum_probs=65.4

Q ss_pred             cCcHHHHHHhcCCCCCC-------CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcC
Q 024152          102 TGSFALDIALGTGGLPK-------GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIG  168 (271)
Q Consensus       102 Tg~~~LD~~l~~GGl~~-------G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g  168 (271)
                      ....+|+..++ ++..+       |.++++.|+||+||||++.+++..+++.+++|++++.+.....      .+....+
T Consensus        75 ~~~~~l~~~~~-~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~  153 (297)
T 1j8m_F           75 IVYDELSNLFG-GDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIG  153 (297)
T ss_dssp             HHHHHHHHHTT-CSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhc-cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCC
Confidence            45566666665 33222       8899999999999999999999999998889999987643321      1233444


Q ss_pred             CcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchh
Q 024152          169 VKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVA  207 (271)
Q Consensus       169 ~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~  207 (271)
                      ++.-.  .....+..+++..+.......+.++++||...
T Consensus       154 v~v~~--~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg  190 (297)
T 1j8m_F          154 VPVYG--EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAG  190 (297)
T ss_dssp             CCEEC--CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred             eEEEe--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            43211  01123455554322222323578999999743

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.29  E-value=4.4e-06  Score=74.67  Aligned_cols=93  Identities=19%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCCCH-HHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .+..+.|.|+||+|||||+..++......   +..+++++....... .....+.-...........+..++...+....
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  123 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV  123 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence            57799999999999999999999988765   456777764322121 11222111110000011234556555555444


Q ss_pred             hcC-CccEEEEcchhhhc
Q 024152          194 RSG-SVDVVVVDSVAALV  210 (271)
Q Consensus       194 ~~~-~~~lvvID~l~~~~  210 (271)
                      ... .+.+++||.++.+.
T Consensus       124 ~~~~~~~vlilDE~~~l~  141 (386)
T 2qby_A          124 RDYGSQVVIVLDEIDAFV  141 (386)
T ss_dssp             HTCCSCEEEEEETHHHHH
T ss_pred             hccCCeEEEEEcChhhhh
Confidence            433 37899999998875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.28  E-value=8.2e-06  Score=70.45  Aligned_cols=120  Identities=18%  Similarity=0.205  Sum_probs=64.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+.++.-+.|.||||+|||+++..++...   +.++++++.......                ........+........
T Consensus        47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~  107 (285)
T 3h4m_A           47 GIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK----------------FIGEGASLVKDIFKLAK  107 (285)
T ss_dssp             CCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC----------------STTHHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh----------------ccchHHHHHHHHHHHHH
Confidence            67788889999999999999999998764   345555543221110                00111222222222233


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ...+.+++||.+..+.+...-....+..   ..++.+...+..+..+....++.||+++...
T Consensus       108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~  166 (285)
T 3h4m_A          108 EKAPSIIFIDEIDAIAAKRTDALTGGDR---EVQRTLMQLLAEMDGFDARGDVKIIGATNRP  166 (285)
T ss_dssp             HTCSEEEEEETTHHHHBCCSSSCCGGGG---HHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred             HcCCeEEEEECHHHhcccCccccCCccH---HHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence            4567899999998886422211111111   2223343444433222223466677776543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.28  E-value=5.3e-06  Score=76.45  Aligned_cols=118  Identities=19%  Similarity=0.248  Sum_probs=69.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+++..=+++.||||+|||+|++.+|..+.   -+.+.++.......                ..-..+..+..+....+
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~~~~l~~~----------------~~Ge~e~~ir~lF~~A~  262 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVNGSEFVHK----------------YLGEGPRMVRDVFRLAR  262 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEEGGGTCCS----------------SCSHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecchhhcc----------------ccchhHHHHHHHHHHHH
Confidence            678888899999999999999999998764   34455543221110                01112222222222333


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                      ...+..+++|.+..+.+...-....+..   ...+.+.+.+..+..+....++.||+++.
T Consensus       263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~---~~~r~l~~lL~~ldg~~~~~~v~vI~aTN  319 (428)
T 4b4t_K          263 ENAPSIIFIDEVDSIATKRFDAQTGSDR---EVQRILIELLTQMDGFDQSTNVKVIMATN  319 (428)
T ss_dssp             HTCSEEEEEECTHHHHCSCSSSCSCCCC---HHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred             HcCCCeeechhhhhhhccccCCCCCCCh---HHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence            5679999999998876533221111111   22345666666666555556666776654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.27  E-value=5.7e-06  Score=75.96  Aligned_cols=117  Identities=19%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+++..=++|+||||+|||.|++.+|.....   +.+.++......                ...-..+.++..+....+
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---~fi~v~~s~l~s----------------k~vGesek~ir~lF~~Ar  272 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSA---TFLRIVGSELIQ----------------KYLGDGPRLCRQIFKVAG  272 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---EEEEEESGGGCC----------------SSSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHhCC---CEEEEEHHHhhh----------------ccCchHHHHHHHHHHHHH
Confidence            7888888999999999999999999987652   344444321111                111123333333333344


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      ...+.+++||.+..+.+...-....+..   ...+.+...+..+..+....++-||+++
T Consensus       273 ~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~LL~~lDg~~~~~~ViVIaAT  328 (437)
T 4b4t_I          273 ENAPSIVFIDEIDAIGTKRYDSNSGGER---EIQRTMLELLNQLDGFDDRGDVKVIMAT  328 (437)
T ss_dssp             HTCSEEEEEEEESSSSCCCSCSSCSSCC---HHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred             hcCCcEEEEehhhhhcccCCCCCCCccH---HHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence            5679999999998876533222221221   2234455555555443334455555554

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.27  E-value=1e-05  Score=72.62  Aligned_cols=88  Identities=15%  Similarity=0.152  Sum_probs=57.1

Q ss_pred             CCc--EEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH-----HHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          118 KGR--VVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       118 ~G~--li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~-----~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      .+.  .+.|.||||+|||||+..++...... +..+++++.......     .+...++....    ....+..++...+
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l  116 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP----RRGLSRDEFLALL  116 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC----SSCCCHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC----CCCCCHHHHHHHH
Confidence            445  89999999999999999999988766 457788875443332     22333433211    1123455655555


Q ss_pred             HHHHh-cCCccEEEEcchhhh
Q 024152          190 DTLIR-SGSVDVVVVDSVAAL  209 (271)
Q Consensus       190 ~~l~~-~~~~~lvvID~l~~~  209 (271)
                      ..... ..++.+++||.++.+
T Consensus       117 ~~~l~~~~~~~vlilDE~~~l  137 (389)
T 1fnn_A          117 VEHLRERDLYMFLVLDDAFNL  137 (389)
T ss_dssp             HHHHHHTTCCEEEEEETGGGS
T ss_pred             HHHHhhcCCeEEEEEECcccc
Confidence            44433 345789999998876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.25  E-value=1.5e-07  Score=78.59  Aligned_cols=58  Identities=24%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL  174 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~  174 (271)
                      ++++|++++|.||||+|||||++.+++. .++.|.|......... ..+.+.+++.+|+.
T Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~-~~~~~~ig~v~q~~   75 (208)
T 3b85_A           18 AIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPA-VEAGEKLGFLPGTL   75 (208)
T ss_dssp             HHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECS-CCTTCCCCSSCC--
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCc-hhhhcceEEecCCH
Confidence            4569999999999999999999999999 8888876331111111 11234577777754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.25  E-value=3.5e-06  Score=77.75  Aligned_cols=118  Identities=19%  Similarity=0.211  Sum_probs=66.5

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .|+++..=++++||||+|||+|++.+|....   -+.+.++......                ...-..+.++..+....
T Consensus       210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~---~~f~~v~~s~l~~----------------~~vGese~~ir~lF~~A  270 (434)
T 4b4t_M          210 MGIRAPKGALMYGPPGTGKTLLARACAAQTN---ATFLKLAAPQLVQ----------------MYIGEGAKLVRDAFALA  270 (434)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGGGGCS----------------SCSSHHHHHHHHHHHHH
T ss_pred             CCCCCCCeeEEECcCCCCHHHHHHHHHHHhC---CCEEEEehhhhhh----------------cccchHHHHHHHHHHHH
Confidence            3788888899999999999999999998764   2344444321111                00111233333333333


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      +...+.+++||.+..+.+...-....+..   ...+.+...+..+..+....++.||+++
T Consensus       271 ~~~aP~IifiDEiDal~~~R~~~~~~~~~---~~~~~~~~lL~~ldg~~~~~~ViVIaaT  327 (434)
T 4b4t_M          271 KEKAPTIIFIDELDAIGTKRFDSEKSGDR---EVQRTMLELLNQLDGFSSDDRVKVLAAT  327 (434)
T ss_dssp             HHHCSEEEEEECTHHHHCCCSSGGGGTTH---HHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred             HhcCCeEEeecchhhhhhccCCCCCCCch---HHHHHHHHHHHHhhccCCCCCEEEEEeC
Confidence            34578999999998876533221111111   2233445555555433334456666554

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.24  E-value=6.6e-07  Score=80.43  Aligned_cols=53  Identities=23%  Similarity=0.159  Sum_probs=45.0

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .+.||+..||.++   -+.+|++++|.|+||+|||||+++|++...++.+.+.+++
T Consensus        54 ~~~tg~~ald~ll---~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G  106 (347)
T 2obl_A           54 PFILGVRAIDGLL---TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG  106 (347)
T ss_dssp             EECCSCHHHHHHS---CEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred             ecCCCCEEEEeee---eecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence            4557899999995   6999999999999999999999999999887766544443

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=98.23  E-value=3.9e-06  Score=69.06  Aligned_cols=110  Identities=17%  Similarity=0.212  Sum_probs=66.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .+|.++.+.|+.|+||||.++.++.++...+.+|+++......   ...+.++.|+..........   ++++..+    
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~---~~i~~~~----   78 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS---REILKYF----   78 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS---THHHHHC----
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH---HHHHHHH----
Confidence            4689999999999999999999999998777788877421111   11122233433222222221   2333321    


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                       ....++|+||..|.+.+                  .+.+.++.+   +.+ +++||+...-.
T Consensus        79 -~~~~dvViIDEaqfl~~------------------~~v~~l~~l---~~~-~~~Vi~~Gl~~  118 (191)
T 1xx6_A           79 -EEDTEVIAIDEVQFFDD------------------EIVEIVNKI---AES-GRRVICAGLDM  118 (191)
T ss_dssp             -CTTCSEEEECSGGGSCT------------------HHHHHHHHH---HHT-TCEEEEEECSB
T ss_pred             -hccCCEEEEECCCCCCH------------------HHHHHHHHH---HhC-CCEEEEEeccc
Confidence             12579999999998642                  112333333   444 99999986533

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.23  E-value=6.8e-06  Score=75.88  Aligned_cols=118  Identities=22%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .|+++..=++|+||||+|||+|++.+|....   -+.++++.......                ..-..+.++..+....
T Consensus       210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~---~~~~~v~~s~l~sk----------------~~Gese~~ir~~F~~A  270 (437)
T 4b4t_L          210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIG---ANFIFSPASGIVDK----------------YIGESARIIREMFAYA  270 (437)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGGGTCCS----------------SSSHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehhhhccc----------------cchHHHHHHHHHHHHH
Confidence            3788888999999999999999999998764   34454543222110                0112233333333334


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      ....+.+++||.+-.+.+...-.+..+..   ...+.+...+..+..+....++.||+++
T Consensus       271 ~~~~P~IifiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~vivI~AT  327 (437)
T 4b4t_L          271 KEHEPCIIFMDEVDAIGGRRFSEGTSADR---EIQRTLMELLTQMDGFDNLGQTKIIMAT  327 (437)
T ss_dssp             HHSCSEEEEEECCCSSSCCCSSSCCSSTT---HHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred             HhcCCceeeeecccccccccccCCCCcch---HHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence            45689999999998876533222211111   2233445555555433333455566554

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=98.19  E-value=4.6e-06  Score=69.68  Aligned_cols=110  Identities=15%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .+|.++.+.|+.|+||||.++..+.++...+.+|+++......   ...+.++.|+.........   .++++..    .
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~---~~~~~~~----~   98 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSA---SKDIFKH----I   98 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSS---GGGGGGG----C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCC---HHHHHHH----H
Confidence            4789999999999999999999999999888888887532111   1134455565544333221   1222221    1


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                       ....++|+||..|.+.+                 ..+ +.++.+   +. .+++||+.....
T Consensus        99 -~~~~dvViIDEaQF~~~-----------------~~V-~~l~~l---~~-~~~~Vi~~Gl~~  138 (214)
T 2j9r_A           99 -TEEMDVIAIDEVQFFDG-----------------DIV-EVVQVL---AN-RGYRVIVAGLDQ  138 (214)
T ss_dssp             -CSSCCEEEECCGGGSCT-----------------THH-HHHHHH---HH-TTCEEEEEECSB
T ss_pred             -hcCCCEEEEECcccCCH-----------------HHH-HHHHHH---hh-CCCEEEEEeccc
Confidence             12589999999998742                 011 334443   44 499999987643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.16  E-value=6e-06  Score=73.34  Aligned_cols=42  Identities=17%  Similarity=0.142  Sum_probs=38.0

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      .++|+++.|+|+||+||||++.++++.+++.+++|++++...
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            458999999999999999999999999999889999988654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.16  E-value=1e-06  Score=71.49  Aligned_cols=38  Identities=21%  Similarity=0.182  Sum_probs=30.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      ++++|++++|.|+|||||||+++.+++.  +..|. ++++.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~-i~i~~   42 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPK-VHFHS   42 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCE-EEECT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCe-EEEcc
Confidence            5889999999999999999999999886  44454 55554

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.15  E-value=2.8e-06  Score=85.33  Aligned_cols=29  Identities=24%  Similarity=0.165  Sum_probs=25.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++++|++++|.||||+|||||+++++...
T Consensus       658 ~~~~g~i~~ItGpNGsGKSTlLr~ial~~  686 (934)
T 3thx_A          658 EKDKQMFHIITGPNMGGKSTYIRQTGVIV  686 (934)
T ss_dssp             ETTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ecCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999996543

>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatal cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}

Probab=98.15  E-value=7.8e-08  Score=79.88  Aligned_cols=74  Identities=16%  Similarity=0.223  Sum_probs=41.2

Q ss_pred             hhhhhhhhhhhhhhhcCCCCCCCCcccccccccc-cccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhc
Q 024152            2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLET-STQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSF   80 (271)
Q Consensus         2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (271)
                      |+||++++++|+|+..      +.++...+|... ..+++++++.||+++|++++.....++.++++++.++++.|++.+
T Consensus       123 a~iV~e~~~~R~li~~------~~~i~~~a~~~~~~~~~~~~ld~ae~~l~~i~~~~~~~~~~~i~~~l~~~~~~ie~~~  196 (200)
T 2r5u_A          123 ASIVAEKALLRRLVEA------GTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSEDFVALEDLLQPTMDEIDAIA  196 (200)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHHHHCSTTCCHHHHHHHHHHHHHTC---------------------------
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHhhCCccCCCHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHH
Confidence            7899999999999998      888888888665 248999999999999999998877889999999999999998765


Q ss_pred             C
Q 024152           81 G   81 (271)
Q Consensus        81 ~   81 (271)
                      .
T Consensus       197 ~  197 (200)
T 2r5u_A          197 S  197 (200)
T ss_dssp             -
T ss_pred             h
Confidence            4

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.14  E-value=1.3e-05  Score=74.33  Aligned_cols=117  Identities=17%  Similarity=0.225  Sum_probs=65.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+++..=++|.||||+|||+|++.+|..+..   +.+.++......                ...-..+.++..+....+
T Consensus       239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---~fi~vs~s~L~s----------------k~vGesek~ir~lF~~Ar  299 (467)
T 4b4t_H          239 GIDPPKGILLYGPPGTGKTLCARAVANRTDA---TFIRVIGSELVQ----------------KYVGEGARMVRELFEMAR  299 (467)
T ss_dssp             TCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---EEEEEEGGGGCC----------------CSSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccCC---CeEEEEhHHhhc----------------ccCCHHHHHHHHHHHHHH
Confidence            7888889999999999999999999987642   344444321111                001122333333333344


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN  253 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s  253 (271)
                      ...+.++++|.+..+.+...-.+. +...  ...+.+...+..+..+....++.||+++
T Consensus       300 ~~aP~IIfiDEiDai~~~R~~~~~-~~~~--~~~~~l~~lL~~lDg~~~~~~ViVIaAT  355 (467)
T 4b4t_H          300 TKKACIIFFDEIDAVGGARFDDGA-GGDN--EVQRTMLELITQLDGFDPRGNIKVMFAT  355 (467)
T ss_dssp             HTCSEEEEEECCTTTSBCCSSSSC-GGGG--HHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred             hcCCceEeecccccccccccCcCC-CccH--HHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence            567999999999887643222211 1111  2233444555555333333455555543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.14  E-value=1.2e-06  Score=73.45  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      -+++|++++|+||||+|||||++.+++.. +  |.+.+
T Consensus        19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~   53 (218)
T 1z6g_A           19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF   53 (218)
T ss_dssp             ---CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred             ecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence            56699999999999999999999999987 4  65444

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.13  E-value=1.5e-06  Score=78.42  Aligned_cols=88  Identities=16%  Similarity=0.140  Sum_probs=50.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcC-Cccee--cCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKT-ENLLL--AQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~-~~~~~--~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|+|++|+|||||++.+++...+..|.|.+-+............+++.+ |+...  +...+..+++..+. 
T Consensus       171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l-  249 (361)
T 2gza_A          171 AVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL-  249 (361)
T ss_dssp             HHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHT-
T ss_pred             HHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHH-
Confidence            345999999999999999999999999988888865544322111111222344444 33222  12345555554432 


Q ss_pred             HHhcCCccEEEEcch
Q 024152          192 LIRSGSVDVVVVDSV  206 (271)
Q Consensus       192 l~~~~~~~lvvID~l  206 (271)
                         ...++.++++.+
T Consensus       250 ---~~~pd~~l~~e~  261 (361)
T 2gza_A          250 ---RMKPTRILLAEL  261 (361)
T ss_dssp             ---TSCCSEEEESCC
T ss_pred             ---hcCCCEEEEcCc
Confidence               235667766654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.13  E-value=2.2e-05  Score=78.76  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=26.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .+++|++++|.||||+|||||+++++....
T Consensus       669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~  698 (918)
T 3thx_B          669 SEDSERVMIITGPNMGGKSSYIKQVALITI  698 (918)
T ss_dssp             CTTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence            477899999999999999999999987543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.13  E-value=1.3e-05  Score=81.31  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      |++++|.||||+|||||++++ +...
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHH
Confidence            899999999999999999999 6554

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.13  E-value=2.9e-06  Score=74.83  Aligned_cols=44  Identities=32%  Similarity=0.497  Sum_probs=37.0

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      +.|+.+.-  .+++|++++|+||||+|||||++.|++..   +|.|+.+
T Consensus       114 ~vL~~vsl--~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~  157 (305)
T 2v9p_A          114 NALKLWLK--GIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF  157 (305)
T ss_dssp             HHHHHHHH--TCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG
T ss_pred             hhhccceE--EecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE
Confidence            34666655  89999999999999999999999999998   6776543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.12  E-value=2.3e-05  Score=69.50  Aligned_cols=79  Identities=22%  Similarity=0.309  Sum_probs=50.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      +..+..-+.|.||||+|||+|++.++....  +...++++.......       +      .  ... +..+..+.....
T Consensus        41 ~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~-------~------~--g~~-~~~~~~lf~~a~  102 (322)
T 1xwi_A           41 KRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK-------W------L--GES-EKLVKNLFQLAR  102 (322)
T ss_dssp             TCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS-------S------C--CSC-HHHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh-------h------h--hHH-HHHHHHHHHHHH
Confidence            566778899999999999999999998752  335555554322211       0      0  112 222222222233


Q ss_pred             cCCccEEEEcchhhhcC
Q 024152          195 SGSVDVVVVDSVAALVP  211 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~  211 (271)
                      ...+.+++||.+..+.+
T Consensus       103 ~~~~~vl~iDEid~l~~  119 (322)
T 1xwi_A          103 ENKPSIIFIDEIDSLCG  119 (322)
T ss_dssp             HTSSEEEEEETTTGGGC
T ss_pred             hcCCcEEEeecHHHhcc
Confidence            45789999999998864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.10  E-value=1.7e-06  Score=71.63  Aligned_cols=30  Identities=33%  Similarity=0.442  Sum_probs=25.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      -+++|++++|+||||||||||++.+++...
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            477999999999999999999999999874

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.10  E-value=4.8e-05  Score=70.13  Aligned_cols=88  Identities=18%  Similarity=0.172  Sum_probs=57.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      ++.++.++|+||+||||++..++..+.+.+++|++++.......      .+....++...  ......+..++...+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~--~~~~~~dp~~i~~~al~  173 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY--GEPNNQNPIEIAKKGVD  173 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEE--CCTTCSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCcee--eccccCCHHHHHHHHHH
Confidence            57899999999999999999999999998889998886533211      12233343221  11122334444433333


Q ss_pred             HHhcCCccEEEEcchh
Q 024152          192 LIRSGSVDVVVVDSVA  207 (271)
Q Consensus       192 l~~~~~~~lvvID~l~  207 (271)
                      .....++++++||...
T Consensus       174 ~a~~~~~DvvIIDTaG  189 (433)
T 3kl4_A          174 IFVKNKMDIIIVDTAG  189 (433)
T ss_dssp             HTTTTTCSEEEEEECC
T ss_pred             HHHhcCCCEEEEECCC
Confidence            3334578999999764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.10  E-value=9.4e-06  Score=72.25  Aligned_cols=30  Identities=20%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH-HhhcCCeEE
Q 024152          122 VEIYGPEASGKTTLALHVIAE-AQRQGGYCV  151 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~-~~~~~g~v~  151 (271)
                      +.|.||||+||||+++.+++. ..+..|.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~   69 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLK   69 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence            899999999999999999995 455666543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.10  E-value=2e-05  Score=70.41  Aligned_cols=89  Identities=20%  Similarity=0.290  Sum_probs=57.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCH-----HHHHHcCCcCCcceecCCCCHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~-----~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      .+..+.|.||||+||||++..++......      +..+++++.......     .+...++....    ....+..+++
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~  118 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP----FTGLSVGEVY  118 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC----SSCCCHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHH
Confidence            56689999999999999999999887653      446777776544332     23334443211    1123455655


Q ss_pred             HHHHHHHh-cCCccEEEEcchhhhc
Q 024152          187 SLVDTLIR-SGSVDVVVVDSVAALV  210 (271)
Q Consensus       187 ~~~~~l~~-~~~~~lvvID~l~~~~  210 (271)
                      ..+..... .....+++||.+..+.
T Consensus       119 ~~l~~~l~~~~~~~vlilDEi~~l~  143 (387)
T 2v1u_A          119 ERLVKRLSRLRGIYIIVLDEIDFLP  143 (387)
T ss_dssp             HHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred             HHHHHHHhccCCeEEEEEccHhhhc
Confidence            55444443 2347799999998775

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.09  E-value=1.5e-05  Score=70.03  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=35.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEH  157 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~  157 (271)
                      .+|++++|+|+||+||||++..+++.+.+. +.+|.+++.+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            378999999999999999999999999874 44888888654

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.07  E-value=6.4e-06  Score=81.17  Aligned_cols=31  Identities=32%  Similarity=0.348  Sum_probs=27.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCe
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGY  149 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~  149 (271)
                      |++++|.||||+|||||++++++... ++.|.
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~  607 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVGS  607 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence            99999999999999999999999875 45553

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.07  E-value=3.4e-06  Score=69.86  Aligned_cols=39  Identities=28%  Similarity=0.344  Sum_probs=31.7

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .++|++++|+|+||||||||++.+++...+.+..+.++.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~   57 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP   57 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            358999999999999999999999999987532344444

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=98.06  E-value=1e-05  Score=67.63  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      ..|.+..|.|+-|+||||.++..+.+....+.+++++......   ...+.++.|...+...+...   .++...+    
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~---~di~~~i----   98 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA---SEIMTHD----   98 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG---GGGGGSC----
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH---HHHHHHH----
Confidence            4789999999999999998877788887777777777532211   12345556655444333322   2332221    


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                       ..+.+.|+||..|.+.+                  .+.+.+..|   + +.|++|++..=
T Consensus        99 -~~~~dvV~IDEaQFf~~------------------~~v~~l~~l---a-~~gi~Vi~~GL  136 (219)
T 3e2i_A           99 -LTNVDVIGIDEVQFFDD------------------EIVSIVEKL---S-ADGHRVIVAGL  136 (219)
T ss_dssp             -CTTCSEEEECCGGGSCT------------------HHHHHHHHH---H-HTTCEEEEEEE
T ss_pred             -hcCCCEEEEechhcCCH------------------HHHHHHHHH---H-HCCCEEEEeec
Confidence             24688999999998862                  122334444   5 68999988754

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=98.06  E-value=5e-07  Score=73.65  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD  160 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~  160 (271)
                      ++.|.|++|||||+|+.+++..    +.+++|+.+....+
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d   36 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILD   36 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC--
T ss_pred             CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCC
Confidence            4789999999999999998754    45789998865544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.04  E-value=2.1e-05  Score=76.48  Aligned_cols=26  Identities=38%  Similarity=0.609  Sum_probs=23.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVI  140 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia  140 (271)
                      -+++|++++|+||||||||||++.++
T Consensus       344 ~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          344 KIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             EecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            57799999999999999999997654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.03  E-value=5.9e-05  Score=64.15  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=43.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccE
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV  200 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~l  200 (271)
                      -++|.||||+||||+++.++....   .++++++.......             ..  ......+...... .....+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~---~~~~~i~~~~~~~~-------------~~--~~~~~~~~~~~~~-a~~~~~~i  107 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSDFVEM-------------FV--GVGASRVRDMFEQ-AKKAAPCI  107 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT---CCEEEECSCSSTTS-------------CC--CCCHHHHHHHHHH-HHTTCSEE
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcC---CCEEEEeHHHHHHH-------------hh--hhhHHHHHHHHHH-HHHcCCee
Confidence            389999999999999999998763   34566654322110             00  1122222222222 22345789


Q ss_pred             EEEcchhhhcC
Q 024152          201 VVVDSVAALVP  211 (271)
Q Consensus       201 vvID~l~~~~~  211 (271)
                      +++|.+..+.+
T Consensus       108 l~iDeid~l~~  118 (257)
T 1lv7_A          108 IFIDEIDAVGR  118 (257)
T ss_dssp             EEETTHHHHTC
T ss_pred             ehhhhhhhhcc
Confidence            99999987764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.03  E-value=4.6e-06  Score=73.80  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=34.8

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC--eEEEEcCC
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--YCVFIDAE  156 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g--~v~~~~~e  156 (271)
                      +++|++++|+|+||||||||++.|++...+..|  .+.++..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd  129 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD  129 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence            689999999999999999999999999987644  46666543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.02  E-value=1.7e-05  Score=69.49  Aligned_cols=87  Identities=23%  Similarity=0.289  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHH------HHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS------LAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~------~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      +|++++|+|+||+||||++.++++..++.+++|.+++........      +....++..  +......+..++...+-.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~--~~~~~~~~p~~l~~~~l~  174 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE  174 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE--EEcCCCCCHHHHHHHHHH
Confidence            789999999999999999999999999988999988865432211      122223221  111122344454322211


Q ss_pred             HHhcCCccEEEEcch
Q 024152          192 LIRSGSVDVVVVDSV  206 (271)
Q Consensus       192 l~~~~~~~lvvID~l  206 (271)
                      .....++++++||..
T Consensus       175 ~~~~~~~D~viiDtp  189 (295)
T 1ls1_A          175 KARLEARDLILVDTA  189 (295)
T ss_dssp             HHHHHTCCEEEEECC
T ss_pred             HHHhCCCCEEEEeCC
Confidence            121246899999975

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.00  E-value=2.5e-05  Score=77.43  Aligned_cols=28  Identities=32%  Similarity=0.461  Sum_probs=26.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++|++++|.||||+|||||++++++...
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~  632 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIAL  632 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence            6899999999999999999999999754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.00  E-value=1.8e-05  Score=65.89  Aligned_cols=39  Identities=23%  Similarity=0.320  Sum_probs=33.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      ++..+.|.||||+|||||+..++......+..+.|++..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~   89 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG   89 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            677899999999999999999999888777778888753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.99  E-value=7.8e-06  Score=67.15  Aligned_cols=53  Identities=30%  Similarity=0.355  Sum_probs=36.1

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN  173 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~  173 (271)
                      .++|++++|.|+|||||||+++.+++..    |. ++++.......  ......++.++.
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~-~~i~~d~~~~~~~~~~~~~g~~~~~   80 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADET----GL-EFAEADAFHSPENIATMQRGIPLTD   80 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHH----CC-EEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhh----CC-eEEcccccccHHHHHHHhcCCCCCC
Confidence            3589999999999999999999999877    44 45554433322  223345666654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.99  E-value=7e-06  Score=67.61  Aligned_cols=40  Identities=30%  Similarity=0.251  Sum_probs=35.2

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .++|.+++|.|+||+|||||+..++....+.++.+.+++.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~   58 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM   58 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence            4578999999999999999999999999888888877754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.98  E-value=4.3e-06  Score=68.50  Aligned_cols=28  Identities=25%  Similarity=0.421  Sum_probs=25.3

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +++|++++|.||||||||||++.+++..
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4589999999999999999999999874

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=97.98  E-value=5.3e-05  Score=63.90  Aligned_cols=107  Identities=17%  Similarity=0.125  Sum_probs=66.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhc
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS  195 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~  195 (271)
                      .|.+..+.|+.|+||||.++..+.++...+.+|+++.......  ....++.|+......+..   .++++..+      
T Consensus        18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~---~~di~~~~------   88 (234)
T 2orv_A           18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACL---LRDVAQEA------   88 (234)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESS---GGGGHHHH------
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCC---HHHHHHHh------
Confidence            6899999999999999999999999988888888775221111  234555565544433332   23333332      


Q ss_pred             CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       196 ~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ...++|+||..|.+..                   +.+..+    ++++.+++||+.....
T Consensus        89 ~~~dvViIDEaQF~~~-------------------v~el~~----~l~~~gi~VI~~GL~~  126 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD-------------------IVEFCE----AMANAGKTVIVAALDG  126 (234)
T ss_dssp             TTCSEEEESSGGGCTT-------------------HHHHHH----HHHHTTCEEEEECCSB
T ss_pred             ccCCEEEEEchhhhhh-------------------HHHHHH----HHHhCCCEEEEEeccc
Confidence            4589999999998741                   222333    3345899999987763

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.97  E-value=9e-07  Score=85.29  Aligned_cols=70  Identities=10%  Similarity=0.130  Sum_probs=41.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCC-----CCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAE-----HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e-----~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      ++|+|+||||||||+..|++...| ..|.|.+.+.+     ......+...+++.+|+..+.+..++.+++..+..
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~  123 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN  123 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred             EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence            999999999999999999998766 56654332211     01112334567888888776666667776665544

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=97.97  E-value=1.8e-05  Score=65.11  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      ..|.++.|.|+.|+||||.+++.+.+....+.+|+|+..+....  ..+.++.|...+.....   +.+++...    . 
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~---~~~d~~~~----~-   89 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPAC---LLRDVAQE----A-   89 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEES---SGGGGHHH----H-
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecC---CHHHHHHh----c-
Confidence            37899999999999999999999999988888899987542221  11233333332222222   22333332    1 


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                       ..++.|+||..|.+ .        .          +.+.++.|   + +.|++||+.....+
T Consensus        90 -~~~DvIlIDEaQFf-k--------~----------~ve~~~~L---~-~~gk~VI~~GL~~D  128 (195)
T 1w4r_A           90 -LGVAVIGIDEGQFF-P--------D----------IVEFCEAM---A-NAGKTVIVAALDGT  128 (195)
T ss_dssp             -HTCSEEEESSGGGC-T--------T----------HHHHHHHH---H-HTTCEEEEEEESBC
T ss_pred             -cCCCEEEEEchhhh-H--------H----------HHHHHHHH---H-HCCCeEEEEecccc
Confidence             24899999999988 3        1          12334444   4 78999999876553

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.97  E-value=2.8e-05  Score=70.94  Aligned_cols=39  Identities=13%  Similarity=0.027  Sum_probs=30.6

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +|..|+.+.-  -|.+| +++|+|+||+|||||+..|.....
T Consensus        47 nf~~l~~v~l--~~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           47 NLATITQLEL--ELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EETTEEEEEE--ECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             cccceeeEEE--ecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            3444544433  67799 999999999999999999977664

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.94  E-value=4.3e-05  Score=70.32  Aligned_cols=87  Identities=23%  Similarity=0.277  Sum_probs=55.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      ++.++.++|++|+||||++.+++..+++.+++|++++.......      .+....+++.  +......+..++...+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v--~~~~~~~~p~~i~~~~l~  174 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE  174 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE--EecCCCCCHHHHHHHHHH
Confidence            68899999999999999999999999988889998886432211      1223344321  111112344455332222


Q ss_pred             HHhcCCccEEEEcch
Q 024152          192 LIRSGSVDVVVVDSV  206 (271)
Q Consensus       192 l~~~~~~~lvvID~l  206 (271)
                      .....+.++++||..
T Consensus       175 ~~~~~~~DvVIIDTa  189 (425)
T 2ffh_A          175 KARLEARDLILVDTA  189 (425)
T ss_dssp             HHHHTTCSEEEEECC
T ss_pred             HHHHCCCCEEEEcCC
Confidence            222357899999964

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.94  E-value=2.8e-06  Score=71.42  Aligned_cols=39  Identities=13%  Similarity=0.223  Sum_probs=29.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFI  153 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~  153 (271)
                      -.++|++++|.||||+|||||++.+++...+  ..+.|.+.
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~t   52 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHT   52 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEec
Confidence            5789999999999999999999999998764  34444443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.94  E-value=4.9e-05  Score=66.99  Aligned_cols=38  Identities=29%  Similarity=0.352  Sum_probs=33.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .+..+.|.||||+|||||+..++......+.+++|++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~   73 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA   73 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence            56789999999999999999999988877777888864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.93  E-value=5.6e-05  Score=65.84  Aligned_cols=86  Identities=19%  Similarity=0.209  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH-HHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG  196 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~  196 (271)
                      +...++|.||||+|||+++..++......++++++++....... .....+|..++.......   ..+..    .....
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~----~~~~~  118 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLTE----AVRRR  118 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHHH----HHHHC
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHHH----HHHhC
Confidence            34589999999999999999999998877777777765433222 334445554432221111   11111    12223


Q ss_pred             CccEEEEcchhhhc
Q 024152          197 SVDVVVVDSVAALV  210 (271)
Q Consensus       197 ~~~lvvID~l~~~~  210 (271)
                      ...++++|.+..+.
T Consensus       119 ~~~vl~lDEi~~l~  132 (311)
T 4fcw_A          119 PYSVILFDAIEKAH  132 (311)
T ss_dssp             SSEEEEEETGGGSC
T ss_pred             CCeEEEEeChhhcC
Confidence            45799999987664

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.92  E-value=2.6e-05  Score=70.65  Aligned_cols=53  Identities=19%  Similarity=0.210  Sum_probs=44.9

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC--eEEEE
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--YCVFI  153 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g--~v~~~  153 (271)
                      +.+.||+..+|.++.   +.+|+.++|+|++|+|||||+..|+..+.....  .++|.
T Consensus       156 ~~~~tGiraID~~~p---i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~  210 (422)
T 3ice_A          156 STEDLTARVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL  210 (422)
T ss_dssp             CTTHHHHHHHHHHSC---CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             Ccccccceeeeeeee---ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence            578999999999885   779999999999999999999999998876433  34554

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.92  E-value=1.1e-05  Score=66.26  Aligned_cols=38  Identities=34%  Similarity=0.333  Sum_probs=31.5

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE-EEEc
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC-VFID  154 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v-~~~~  154 (271)
                      .++|+++.|.|+|||||||+++.++..+. ..|.+ +|++
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d   60 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD   60 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence            35899999999999999999999999887 44543 4555

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.92  E-value=7.8e-05  Score=69.62  Aligned_cols=118  Identities=19%  Similarity=0.211  Sum_probs=61.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      .+++|  ++|.||||+|||+|++.+++...   .+.++++.......             ..  ......+...+.. ..
T Consensus        47 ~~p~g--vLL~GppGtGKT~Laraia~~~~---~~f~~is~~~~~~~-------------~~--g~~~~~~r~lf~~-A~  105 (476)
T 2ce7_A           47 RMPKG--ILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVEL-------------FV--GVGAARVRDLFAQ-AK  105 (476)
T ss_dssp             CCCSE--EEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGTTTC-------------CT--THHHHHHHHHHHH-HH
T ss_pred             CCCCe--EEEECCCCCCHHHHHHHHHHHcC---CCeeeCCHHHHHHH-------------Hh--cccHHHHHHHHHH-HH
Confidence            34455  88999999999999999998653   34555543221110             00  0011222222222 22


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ...+++++||.+..+.+...-....+..   ...+.+.+.+..+..+-...++.||++++..
T Consensus       106 ~~~p~ILfIDEid~l~~~r~~~~~g~~~---~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~  164 (476)
T 2ce7_A          106 AHAPCIVFIDEIDAVGRHRGAGLGGGHD---EREQTLNQLLVEMDGFDSKEGIIVMAATNRP  164 (476)
T ss_dssp             HTCSEEEEEETGGGTCCC---------C---HHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred             hcCCCEEEEechhhhhhhcccccCcCcH---HHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence            3568999999998876421100000111   1223334444444333334577888877754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.91  E-value=7.4e-05  Score=64.66  Aligned_cols=37  Identities=32%  Similarity=0.404  Sum_probs=28.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      -+++|  ++|.||||+|||||++.+++....   ..++++..
T Consensus        42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~   78 (274)
T 2x8a_A           42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL---NFISVKGP   78 (274)
T ss_dssp             CCCSE--EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETT
T ss_pred             CCCCe--EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcH
Confidence            45566  999999999999999999987643   34555543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.90  E-value=6.1e-05  Score=69.56  Aligned_cols=88  Identities=18%  Similarity=0.165  Sum_probs=57.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      ++.++.++|+||+||||++..++..+...+.+|++++.......      .+....+++.-.  .....+..++...+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~--~~~~~dp~~i~~~al~  176 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG--NPQEKDAIKLAKEGVD  176 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC--CTTCCCHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe--cCCCCCHHHHHHHHHH
Confidence            46799999999999999999999999888888998886543322      233334443211  1112344444433333


Q ss_pred             HHhcCCccEEEEcchh
Q 024152          192 LIRSGSVDVVVVDSVA  207 (271)
Q Consensus       192 l~~~~~~~lvvID~l~  207 (271)
                      .....+.++++||...
T Consensus       177 ~a~~~~~DvVIIDTaG  192 (443)
T 3dm5_A          177 YFKSKGVDIIIVDTAG  192 (443)
T ss_dssp             HHHHTTCSEEEEECCC
T ss_pred             HHHhCCCCEEEEECCC
Confidence            3334568999999754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.90  E-value=5.9e-05  Score=63.94  Aligned_cols=78  Identities=23%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+++..-+.|.||||+|||+++..++....   .++++++.......               +.......+...+.. ..
T Consensus        35 g~~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-a~   95 (262)
T 2qz4_A           35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAGAEFVEV---------------IGGLGAARVRSLFKE-AR   95 (262)
T ss_dssp             -CCCCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEETTTTSSS---------------STTHHHHHHHHHHHH-HH
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEechHHHHhh---------------ccChhHHHHHHHHHH-HH
Confidence            556667799999999999999999988653   34566654322110               000011122222222 22


Q ss_pred             cCCccEEEEcchhhhcC
Q 024152          195 SGSVDVVVVDSVAALVP  211 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~  211 (271)
                      ...+.+++||.+..+..
T Consensus        96 ~~~~~vl~iDeid~l~~  112 (262)
T 2qz4_A           96 ARAPCIVYIDEIDAVGK  112 (262)
T ss_dssp             HTCSEEEEEECC-----
T ss_pred             hcCCeEEEEeCcchhhc
Confidence            34578999999988753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.90  E-value=6.1e-05  Score=66.51  Aligned_cols=78  Identities=22%  Similarity=0.302  Sum_probs=48.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      +..+..-+.|.||||+|||++++.++...   +.++++++..     .+...  +.         ...+..+..+.....
T Consensus        47 ~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~-----~l~~~--~~---------g~~~~~~~~~f~~a~  107 (322)
T 3eie_A           47 NRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS-----DLVSK--WM---------GESEKLVKQLFAMAR  107 (322)
T ss_dssp             TCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHH-----HHHTT--TG---------GGHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchH-----HHhhc--cc---------chHHHHHHHHHHHHH
Confidence            44566789999999999999999998765   3455555431     11000  00         112233322222333


Q ss_pred             cCCccEEEEcchhhhcC
Q 024152          195 SGSVDVVVVDSVAALVP  211 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~  211 (271)
                      ...+.+++||.+..+.+
T Consensus       108 ~~~~~vl~iDEid~l~~  124 (322)
T 3eie_A          108 ENKPSIIFIDQVDALTG  124 (322)
T ss_dssp             HTSSEEEEEECGGGGSC
T ss_pred             hcCCeEEEechhhhhhc
Confidence            45788999999998864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.89  E-value=1.4e-05  Score=70.96  Aligned_cols=37  Identities=24%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEH  157 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~  157 (271)
                      +++|+|+||||||||+..+++....  .++.+.+++...
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence            9999999999999999999998873  456777776543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.89  E-value=7.4e-06  Score=69.61  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=25.7

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .|+.+.-  -+++|.+++|.||||||||||++.+++..
T Consensus        14 ~l~~isl--~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           14 GTENLYF--QSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             -----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eecceec--cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4444433  67799999999999999999999999976

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.89  E-value=2.9e-05  Score=68.04  Aligned_cols=78  Identities=23%  Similarity=0.318  Sum_probs=48.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |++++..++|.||||+|||++++.++....   .+.+.++..    .......|...        .....++..+    .
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~----~l~~~~~g~~~--------~~~~~~f~~a----~  105 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGP----ELLTMWFGESE--------ANVREIFDKA----R  105 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHH----HHHHHHHTTCT--------THHHHHHHHH----H
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhH----HHHhhhcCchH--------HHHHHHHHHH----H
Confidence            788999999999999999999999998653   344544421    11111122111        1122222222    2


Q ss_pred             cCCccEEEEcchhhhcC
Q 024152          195 SGSVDVVVVDSVAALVP  211 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~  211 (271)
                      ...+.++++|.+..+.+
T Consensus       106 ~~~p~il~iDEid~l~~  122 (301)
T 3cf0_A          106 QAAPCVLFFDELDSIAK  122 (301)
T ss_dssp             HTCSEEEEECSTTHHHH
T ss_pred             hcCCeEEEEEChHHHhh
Confidence            34688999999987653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.89  E-value=1e-05  Score=66.66  Aligned_cols=36  Identities=36%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      ++|++++|.|+||||||||++.+++...+   .+.|++.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~   39 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPM   39 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEec
Confidence            58899999999999999999999998764   3555553

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.89  E-value=1.8e-06  Score=74.80  Aligned_cols=34  Identities=15%  Similarity=0.148  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .++|+||||+|||||++.+++...+..|.+.+.+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g   37 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE   37 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC----------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCC
Confidence            4789999999999999999999999888765543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.87  E-value=0.00017  Score=62.44  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=47.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS  197 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~  197 (271)
                      ++.-++|.||||+|||++++.++...   +.+.+.++.......                .....++....+........
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~~  113 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK----------------YVGDGEKLVRALFAVARHMQ  113 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----------------SCSCHHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----------------ccchHHHHHHHHHHHHHHcC
Confidence            56789999999999999999998765   334455554322110                01123333332222333457


Q ss_pred             ccEEEEcchhhhcC
Q 024152          198 VDVVVVDSVAALVP  211 (271)
Q Consensus       198 ~~lvvID~l~~~~~  211 (271)
                      +.+++||.+..+.+
T Consensus       114 ~~vl~iDEid~l~~  127 (297)
T 3b9p_A          114 PSIIFIDEVDSLLS  127 (297)
T ss_dssp             SEEEEEETGGGTSB
T ss_pred             CcEEEeccHHHhcc
Confidence            89999999988864

>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22

Probab=97.87  E-value=0.00027  Score=56.09  Aligned_cols=107  Identities=18%  Similarity=0.126  Sum_probs=71.9

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEE-cCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCCCHHHHHHcCCcCCcc
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIY-GPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENL  174 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~-G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~~~~~~~~~g~~~~~~  174 (271)
                      +.+|.|.+.+|..+..||++.|-+++|. ..+|.|=..|+.-++..+..  .++.++|+..............|++++++
T Consensus        23 ~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rl  102 (161)
T 1oft_A           23 NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERI  102 (161)
T ss_dssp             --------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGE
T ss_pred             ccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHE
Confidence            4579999999998854899999999998 46888877777766666654  67899999987777777778899999999


Q ss_pred             eecCCCCHHHHHHHHHHHHhcCCccEEEEc
Q 024152          175 LLAQPDCGEQALSLVDTLIRSGSVDVVVVD  204 (271)
Q Consensus       175 ~~~~~~~~~e~~~~~~~l~~~~~~~lvvID  204 (271)
                      .+.+..+..+.++.+.+..+...+..|+..
T Consensus       103 l~v~~~~~~daLwa~EqALrsG~~~aVl~W  132 (161)
T 1oft_A          103 LLLQAKDNAAALALSCEALRLGRSHTVVSW  132 (161)
T ss_dssp             EEECCSSTTHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEECCChHHHHHHHHHHHhcCCccEEEEC
Confidence            999988888999988888887888888764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.87  E-value=9.3e-06  Score=65.65  Aligned_cols=30  Identities=13%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      |-.+|++++|+||||+|||||++.+++...
T Consensus         1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            1 GSHMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            345899999999999999999999998764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.86  E-value=1.6e-05  Score=63.97  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      ++|.+++|.|++||||||++..++..+.+.+-++++++
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d   40 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   40 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence            68999999999999999999999998876444556555

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.86  E-value=1.1e-05  Score=74.08  Aligned_cols=39  Identities=18%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .+|++++|+||||+|||||++.+++...+..|.|++++.
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed  203 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED  203 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence            589999999999999999999999999888888887764

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.83  E-value=0.00011  Score=69.16  Aligned_cols=114  Identities=23%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH-HHHcCCcCCcceecCCC-CHHHHHHHHHHHHh
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL-AETIGVKTENLLLAQPD-CGEQALSLVDTLIR  194 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~-~~~~g~~~~~~~~~~~~-~~~e~~~~~~~l~~  194 (271)
                      ++...++|.||||+||||++..++..+   +..+++++......... ...+.-..+...+.... ...+      ....
T Consensus        75 ~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~  145 (516)
T 1sxj_A           75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEE------AQNL  145 (516)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----------CCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhh------hhhc
Confidence            466799999999999999999998876   45677776654444322 11111111100000000 0000      1112


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      .....+++||.+..+...        ..          ..+..|..+.++.+++||+++....
T Consensus       146 ~~~~~vliIDEid~l~~~--------~~----------~~l~~L~~~l~~~~~~iIli~~~~~  190 (516)
T 1sxj_A          146 NGKHFVIIMDEVDGMSGG--------DR----------GGVGQLAQFCRKTSTPLILICNERN  190 (516)
T ss_dssp             STTSEEEEECSGGGCCTT--------ST----------THHHHHHHHHHHCSSCEEEEESCTT
T ss_pred             cCCCeEEEEECCCccchh--------hH----------HHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            345789999999887631        11          1122344445677888888876543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.83  E-value=0.00023  Score=56.49  Aligned_cols=81  Identities=16%  Similarity=0.247  Sum_probs=46.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhh-------cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD  190 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~-------~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~  190 (271)
                      .+..+.|.|+||+|||+++..++..+..       .+..+++++...     ..  .+...    ..  .....+...+.
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~----~~--~~~~~~~~~~~  108 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA-----LV--AGAKY----RG--EFEERLKGVLN  108 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-----HH--TTTCS----HH--HHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH-----Hh--ccCCc----cc--cHHHHHHHHHH
Confidence            4567899999999999999999988765       234555554210     00  00000    00  00111222233


Q ss_pred             HHHhcCCccEEEEcchhhhcC
Q 024152          191 TLIRSGSVDVVVVDSVAALVP  211 (271)
Q Consensus       191 ~l~~~~~~~lvvID~l~~~~~  211 (271)
                      .+....+..+++||.+..+.+
T Consensus       109 ~~~~~~~~~vl~iDe~~~l~~  129 (195)
T 1jbk_A          109 DLAKQEGNVILFIDELHTMVG  129 (195)
T ss_dssp             HHHHSTTTEEEEEETGGGGTT
T ss_pred             HHhhcCCCeEEEEeCHHHHhc
Confidence            333345577999999988753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.83  E-value=2e-05  Score=63.73  Aligned_cols=39  Identities=36%  Similarity=0.422  Sum_probs=34.8

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      ..+|.++.|.|+||+||||++..++..+...++.+.+++
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   48 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD   48 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence            458999999999999999999999999888888877775

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.81  E-value=9e-05  Score=66.51  Aligned_cols=78  Identities=22%  Similarity=0.340  Sum_probs=46.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      +..+..-++|.||||+|||+|++.++....   .++++++..     .+..  .+      ..  .. +..+..+.....
T Consensus        80 ~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~v~~~-----~l~~--~~------~g--~~-~~~~~~~f~~a~  140 (355)
T 2qp9_X           80 NRKPTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSS-----DLVS--KW------MG--ES-EKLVKQLFAMAR  140 (355)
T ss_dssp             SCCCCCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEEEHH-----HHHS--CC-----------C-HHHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCEEEeeHH-----HHhh--hh------cc--hH-HHHHHHHHHHHH
Confidence            455666789999999999999999998763   444555421     1110  00      00  11 222222222233


Q ss_pred             cCCccEEEEcchhhhcC
Q 024152          195 SGSVDVVVVDSVAALVP  211 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~  211 (271)
                      ...+.+++||.+..+.+
T Consensus       141 ~~~~~vl~iDEid~l~~  157 (355)
T 2qp9_X          141 ENKPSIIFIDQVDALTG  157 (355)
T ss_dssp             HTSSEEEEEECGGGGTC
T ss_pred             HcCCeEEEEechHhhcc
Confidence            45788999999998864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.80  E-value=1.1e-05  Score=66.42  Aligned_cols=28  Identities=32%  Similarity=0.472  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++|++++|+||||+|||||++.+++...
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5799999999999999999999999874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.79  E-value=1.3e-05  Score=65.52  Aligned_cols=30  Identities=23%  Similarity=0.444  Sum_probs=26.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      +++|++++|.|+|||||||++..++....+
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~   32 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST   32 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            578999999999999999999999987644

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.79  E-value=3e-05  Score=67.73  Aligned_cols=82  Identities=16%  Similarity=0.196  Sum_probs=46.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |.++...++|.||||+|||+|+..++..+   +.++++++......    ...|..        .....+.+..+..+.+
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~----~~~g~~--------~~~i~~~f~~a~~~~~   96 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELES----GNAGEP--------AKLIRQRYREAAEIIR   96 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHC----C---HH--------HHHHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhh----ccCchh--------HHHHHHHHHHHHHHHh
Confidence            56667789999999999999999999877   33455555211000    000000        0001122333333334


Q ss_pred             cCCccEEEEcchhhhcC
Q 024152          195 SGSVDVVVVDSVAALVP  211 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~  211 (271)
                      ...+.+++||.+..+.+
T Consensus        97 ~~~~~vl~iDEiD~~~~  113 (293)
T 3t15_A           97 KGNMCCLFINDLDAGAG  113 (293)
T ss_dssp             TSSCCCEEEECCC----
T ss_pred             cCCCeEEEEechhhhcC
Confidence            56789999999977654

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.79  E-value=0.0005  Score=57.76  Aligned_cols=43  Identities=26%  Similarity=0.180  Sum_probs=35.5

Q ss_pred             CCcE-EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC
Q 024152          118 KGRV-VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD  160 (271)
Q Consensus       118 ~G~l-i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~  160 (271)
                      +|.+ +.+.|+||+||||++.+++..++..+.+|++++.+.-..
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~   47 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR   47 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence            5666 788999999999999999999998877888877654333

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.78  E-value=1.8e-05  Score=64.10  Aligned_cols=31  Identities=23%  Similarity=0.315  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      |++++|.|+||+||||+++.++.   +.++.+.+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i   32 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYI   32 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEE
Confidence            68999999999999999999975   45565443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.77  E-value=0.0001  Score=68.15  Aligned_cols=106  Identities=17%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG  196 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~--~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~  196 (271)
                      +.-+.|.||||+|||||+..++..+...  +..++|++.+.... .+...+.          ......+   ... . ..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~~~~~~----------~~~~~~~---~~~-~-~~  193 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMK----------EGKLNEF---REK-Y-RK  193 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HHHHHHH----------TTCHHHH---HHH-H-TT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHH----------cccHHHH---HHH-h-cC
Confidence            5789999999999999999999988765  55778876432111 1111000          0011111   111 1 12


Q ss_pred             CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          197 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       197 ~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      .+++++||.++.+.+         ..   ..+.++...+..+    .+.++.||++++..
T Consensus       194 ~~~vL~IDEi~~l~~---------~~---~~q~~l~~~l~~l----~~~~~~iIitt~~~  237 (440)
T 2z4s_A          194 KVDILLIDDVQFLIG---------KT---GVQTELFHTFNEL----HDSGKQIVICSDRE  237 (440)
T ss_dssp             TCSEEEEECGGGGSS---------CH---HHHHHHHHHHHHH----HTTTCEEEEEESSC
T ss_pred             CCCEEEEeCcccccC---------Ch---HHHHHHHHHHHHH----HHCCCeEEEEECCC
Confidence            688999999988762         10   1122333333333    46688888888764

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.76  E-value=4.6e-05  Score=70.79  Aligned_cols=50  Identities=26%  Similarity=0.403  Sum_probs=43.4

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY  149 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~  149 (271)
                      .+.+.||+..+|.+..   +-+|+.++|+|+||+|||||++.++.+.....+.
T Consensus       132 ~e~l~TGir~ID~L~p---i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~  181 (473)
T 1sky_E          132 VEILETGIKVVDLLAP---YIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGG  181 (473)
T ss_dssp             CCEECCSCHHHHHHSC---EETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred             CccccccchHHHHHhh---hccCCEEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence            4678999999999975   6689999999999999999999999988765443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.75  E-value=7.8e-05  Score=74.69  Aligned_cols=26  Identities=38%  Similarity=0.609  Sum_probs=24.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVI  140 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia  140 (271)
                      -+++|++++|+|+||+|||||++.++
T Consensus       646 ~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          646 KIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             EEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             EEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            57799999999999999999999865

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.73  E-value=8.7e-06  Score=68.36  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHH-HHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVI-AEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia-~~~  143 (271)
                      -+++|++++|.|||||||||+++.++ +..
T Consensus        23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            46699999999999999999999999 876

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.72  E-value=1.2e-05  Score=75.14  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=34.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      -+++ ++++|.||||||||||++.+++...+..|.+.+.+
T Consensus        26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g   64 (483)
T 3euj_A           26 DFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN   64 (483)
T ss_dssp             ECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred             EEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence            5778 99999999999999999999999999888855543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.71  E-value=6.2e-05  Score=59.89  Aligned_cols=28  Identities=14%  Similarity=0.151  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      .+..+.|.|+||+|||+++..++.....
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3557799999999999999999988765

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.67  E-value=9.2e-05  Score=73.18  Aligned_cols=116  Identities=22%  Similarity=0.359  Sum_probs=65.8

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .|+.+..=++|.||||+|||+|++.+|..+   +...++++..     .+.   +        ...-..+..+..+....
T Consensus       233 ~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~-----~l~---s--------k~~gese~~lr~lF~~A  293 (806)
T 3cf2_A          233 IGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP-----EIM---S--------KLAGESESNLRKAFEEA  293 (806)
T ss_dssp             CCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHH-----HHH---S--------SCTTHHHHHHHHHHHHH
T ss_pred             cCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhH-----Hhh---c--------ccchHHHHHHHHHHHHH
Confidence            477888889999999999999999988654   2344444421     111   0        00112233333332333


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                      ....+.+++||.+-.+.+...-..  ++.    ..+.+.+.+..+..+....++.||+.+.
T Consensus       294 ~~~~PsIIfIDEiDal~~~r~~~~--~~~----~~riv~~LL~~mdg~~~~~~V~VIaaTN  348 (806)
T 3cf2_A          294 EKNAPAIIFIDELDAIAPKREKTH--GEV----ERRIVSQLLTLMDGLKQRAHVIVMAATN  348 (806)
T ss_dssp             TTSCSEEEEEESGGGTCCTTTTCC--CTT----HHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred             HHcCCeEEEEehhcccccccCCCC--ChH----HHHHHHHHHHHHhcccccCCEEEEEecC
Confidence            456799999999998875332111  221    1233444444454444455666666654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.64  E-value=3.1e-05  Score=64.09  Aligned_cols=28  Identities=25%  Similarity=0.500  Sum_probs=25.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++|.+++|.||||+||||++..++....
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4899999999999999999999988764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.64  E-value=6.8e-05  Score=61.85  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQ  146 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~  146 (271)
                      ..+.|.|+||+||||++..++......
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            489999999999999999999877643

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.63  E-value=0.00028  Score=62.61  Aligned_cols=30  Identities=27%  Similarity=0.566  Sum_probs=25.2

Q ss_pred             CCcE--EEEEcCCCCcHHHHHHHHHHHHhhcC
Q 024152          118 KGRV--VEIYGPEASGKTTLALHVIAEAQRQG  147 (271)
Q Consensus       118 ~G~l--i~I~G~~G~GKTtl~~~ia~~~~~~~  147 (271)
                      .|++  ++|.||||+||||+++.++..+....
T Consensus        43 ~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~   74 (340)
T 1sxj_C           43 EGKLPHLLFYGPPGTGKTSTIVALAREIYGKN   74 (340)
T ss_dssp             TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence            4444  99999999999999999999876543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.62  E-value=2.4e-05  Score=65.79  Aligned_cols=36  Identities=25%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      ..++|++++|.|++||||||+++.+++.    +|.|.+..
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~   51 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT   51 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence            5679999999999999999999998876    56666654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.61  E-value=4e-05  Score=61.17  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=28.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      .+|++++|.|+||+||||++..++...    |. .+++...
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~-~~i~~d~   41 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HA-AFLDGDF   41 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TC-EEEEGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----Cc-EEEeCcc
Confidence            478999999999999999999998865    33 4555443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.61  E-value=0.00046  Score=56.08  Aligned_cols=24  Identities=25%  Similarity=0.392  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      +.|.|+||+|||+++..++..+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~~   64 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLFG   64 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhc
Confidence            899999999999999999987654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.60  E-value=0.00038  Score=69.79  Aligned_cols=23  Identities=35%  Similarity=0.598  Sum_probs=21.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLAL  137 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~  137 (271)
                      -+++|++++|+|+||+|||||++
T Consensus       606 ~I~~Geiv~I~G~SGSGKSTLl~  628 (916)
T 3pih_A          606 EIPLGVFVCVTGVSGSGKSSLVM  628 (916)
T ss_dssp             EEESSSEEEEECSTTSSHHHHHH
T ss_pred             EEcCCcEEEEEccCCCChhhhHH
Confidence            57799999999999999999974

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.59  E-value=8.6e-06  Score=81.93  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=34.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      -+.+|++++|.|+||+|||||++.|++...++.|.|.+
T Consensus       695 ~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~  732 (986)
T 2iw3_A          695 QCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT  732 (986)
T ss_dssp             EEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            47799999999999999999999999999988887654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.59  E-value=0.00032  Score=60.97  Aligned_cols=38  Identities=29%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC----CeEEEEc
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQG----GYCVFID  154 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~----g~v~~~~  154 (271)
                      .++.-+.|.||||+|||+++..++..+...+    +++++++
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~  106 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT  106 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence            3556799999999999999999998886532    3566665

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.58  E-value=1.4e-05  Score=73.35  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYC  150 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v  150 (271)
                      +++|+||||+|||||++.+++...+..|.+
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI  100 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAA  100 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceE
Confidence            999999999999999999999887776654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.57  E-value=5.3e-06  Score=73.25  Aligned_cols=37  Identities=14%  Similarity=0.059  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      +.+|++++|+|+||+|||||++.+++...+..|.+.+
T Consensus       170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~  206 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  206 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence            5589999999999999999999999988887777554

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.56  E-value=0.00049  Score=61.66  Aligned_cols=76  Identities=18%  Similarity=0.318  Sum_probs=46.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG  196 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~  196 (271)
                      .+..-++|.||||+|||+|+..++...   +..+++++.......                .....+..+..+.......
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~~~~a~~~  175 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK----------------WVGEGEKMVRALFAVARCQ  175 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----------------STTHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----------------ccchHHHHHHHHHHHHHhc
Confidence            356679999999999999999998764   345566654221110                0011122222222223345


Q ss_pred             CccEEEEcchhhhcC
Q 024152          197 SVDVVVVDSVAALVP  211 (271)
Q Consensus       197 ~~~lvvID~l~~~~~  211 (271)
                      .+.+++||.+..+.+
T Consensus       176 ~~~vl~iDEid~l~~  190 (357)
T 3d8b_A          176 QPAVIFIDEIDSLLS  190 (357)
T ss_dssp             CSEEEEEETHHHHTB
T ss_pred             CCeEEEEeCchhhhc
Confidence            688999999988864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.56  E-value=5.2e-05  Score=62.09  Aligned_cols=29  Identities=21%  Similarity=0.076  Sum_probs=24.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+++|.+++|.|+|||||||++..++...
T Consensus        21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45699999999999999999999999876

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.55  E-value=8.6e-05  Score=66.48  Aligned_cols=88  Identities=17%  Similarity=0.182  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCeEEEEcCCCCC-CH-----HHHHHc-CCcCCcceecCCCCH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ--------GGYCVFIDAEHAL-DP-----SLAETI-GVKTENLLLAQPDCG  182 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~--------~g~v~~~~~e~~~-~~-----~~~~~~-g~~~~~~~~~~~~~~  182 (271)
                      .+..+.|.||||+|||+++..++..+...        +..+++++..... ..     .+...+ +....    ....+.
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~  119 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP----KHGINL  119 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC----SSSSCT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC----CCCCCH
Confidence            34589999999999999999999887654        5567777643221 11     112222 32211    111233


Q ss_pred             HHHHHHHHHHHhcCCccEEEEcchhhhc
Q 024152          183 EQALSLVDTLIRSGSVDVVVVDSVAALV  210 (271)
Q Consensus       183 ~e~~~~~~~l~~~~~~~lvvID~l~~~~  210 (271)
                      .+++..+.......+. +++||.++.+.
T Consensus       120 ~~~~~~l~~~l~~~~~-vlilDEi~~l~  146 (384)
T 2qby_B          120 GEYIDKIKNGTRNIRA-IIYLDEVDTLV  146 (384)
T ss_dssp             HHHHHHHHHHHSSSCE-EEEEETTHHHH
T ss_pred             HHHHHHHHHHhccCCC-EEEEECHHHhc
Confidence            4555555544443444 99999998775

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.54  E-value=0.00034  Score=64.68  Aligned_cols=79  Identities=19%  Similarity=0.291  Sum_probs=48.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      +..+..-++|.||||+|||+|+..++...  .+..++.++.......    ..|.        ......+++..++    
T Consensus       163 ~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~----~~g~--------~~~~~~~~f~~a~----  224 (444)
T 2zan_A          163 KRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK----WLGE--------SEKLVKNLFQLAR----  224 (444)
T ss_dssp             GGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC---------------------CCCTHHHHHHHHH----
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh----hcch--------HHHHHHHHHHHHH----
Confidence            45677889999999999999999999875  2335555554322211    1111        1112333333332    


Q ss_pred             cCCccEEEEcchhhhcC
Q 024152          195 SGSVDVVVVDSVAALVP  211 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~  211 (271)
                      ...+.+++||.+..+.+
T Consensus       225 ~~~~~vl~iDEid~l~~  241 (444)
T 2zan_A          225 ENKPSIIFIDEIDSLCG  241 (444)
T ss_dssp             HSCSEEEEESCTTTTCC
T ss_pred             HcCCeEEEEechHhhcc
Confidence            35689999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.53  E-value=3.5e-05  Score=69.33  Aligned_cols=46  Identities=22%  Similarity=0.246  Sum_probs=35.1

Q ss_pred             cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEE
Q 024152          102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFI  153 (271)
Q Consensus       102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~  153 (271)
                      .|+.+|....      +|++++|+|+||+|||||++.+++... +..|.|.+.
T Consensus       204 ~gl~~L~~~~------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~  250 (358)
T 2rcn_A          204 DGLKPLEEAL------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV  250 (358)
T ss_dssp             BTHHHHHHHH------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred             cCHHHHHHhc------CCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence            4667777655      689999999999999999999999887 777776554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.52  E-value=9.8e-05  Score=66.18  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=34.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      +++.+++|+|+||+|||||++.+++...+.+++|.++..+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d  111 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD  111 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence            3578999999999999999999999988888887777643

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.52  E-value=5.6e-05  Score=71.85  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=35.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDA  155 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~  155 (271)
                      -+++|+++.|+|+|||||||+++.+++.+.+.+| .+.+++.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg  406 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG  406 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence            3568999999999999999999999999988775 6666764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.51  E-value=0.0001  Score=60.86  Aligned_cols=40  Identities=28%  Similarity=0.306  Sum_probs=33.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFID  154 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~  154 (271)
                      .+++|.++.|.|+||+||||++..++....+..| ++++++
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~   61 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD   61 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence            3568999999999999999999999998874433 566775

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.50  E-value=9e-05  Score=67.17  Aligned_cols=42  Identities=36%  Similarity=0.425  Sum_probs=33.7

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      .|+.+.-  ++++|++++|.||||+|||||+..+++..   +|.+++
T Consensus       158 ~l~~~~~--~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          158 FLKCMVY--NIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             HHHHHHH--CCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             HHHhccc--ccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            4455554  89999999999999999999999999753   565444

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.49  E-value=7.4e-05  Score=60.30  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=26.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      |.+++.++.|.|+||+||||++..++...
T Consensus         1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            1 GMQTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            56788999999999999999999998765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.49  E-value=0.0006  Score=60.72  Aligned_cols=31  Identities=32%  Similarity=0.433  Sum_probs=27.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      |..+|..+.|.||||+|||++++.++..+..
T Consensus        66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            6667899999999999999999999998763

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.49  E-value=0.00059  Score=62.90  Aligned_cols=87  Identities=20%  Similarity=0.116  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH--H----HHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--S----LAETIGVKTENLLLAQPDCGEQALSLVD  190 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~--~----~~~~~g~~~~~~~~~~~~~~~e~~~~~~  190 (271)
                      +..++.++|++|+||||++.+++..++.. +.+|++++.......  .    +....+++.-.  .....+..+++..+-
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~--~~~~~dp~~i~~~~l  176 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP--SDVGQKPVDIVNAAL  176 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC--CCSSSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe--CCCCCCHHHHHHHHH
Confidence            34689999999999999999999999987 778999987643221  1    22333332110  011134455533222


Q ss_pred             HHHhcCCccEEEEcch
Q 024152          191 TLIRSGSVDVVVVDSV  206 (271)
Q Consensus       191 ~l~~~~~~~lvvID~l  206 (271)
                      ......+.++++||..
T Consensus       177 ~~~~~~~~D~VIIDTp  192 (433)
T 2xxa_A          177 KEAKLKFYDVLLVDTA  192 (433)
T ss_dssp             HHHHHTTCSEEEEECC
T ss_pred             HHHHhCCCCEEEEECC
Confidence            2222356899999974

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.49  E-value=0.00013  Score=56.70  Aligned_cols=37  Identities=22%  Similarity=0.208  Sum_probs=28.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .+.-+.|.|+||+|||+++..++......+.+.+ ++.
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~   59 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRE   59 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EEC
Confidence            3445899999999999999999876655555545 543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.48  E-value=0.00053  Score=68.11  Aligned_cols=30  Identities=27%  Similarity=0.468  Sum_probs=26.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHH-HHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALH-VIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~-ia~~~~  144 (271)
                      -+++|++++|+|+||+|||||++. +++.+.
T Consensus       519 ~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~  549 (842)
T 2vf7_A          519 RFPLGVMTSVTGVSGSGKSTLVSQALVDALA  549 (842)
T ss_dssp             EEESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred             EEcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence            678999999999999999999997 666553

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.48  E-value=0.00013  Score=65.08  Aligned_cols=42  Identities=17%  Similarity=0.094  Sum_probs=36.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      -..+|.+++|.|+||+|||||+.++++...+.+++|.+++.+
T Consensus        52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            345899999999999999999999999999888888877654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.48  E-value=0.00086  Score=62.97  Aligned_cols=40  Identities=33%  Similarity=0.322  Sum_probs=33.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      +..+++|+|+||+||||++..++..++..+.+|.+++.+.
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            3558999999999999999999999887777888887643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.48  E-value=5.2e-05  Score=71.44  Aligned_cols=39  Identities=21%  Similarity=0.142  Sum_probs=32.6

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +++|++++|+|+||||||||++.+++.+.+..+.+.+-+
T Consensus       257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied  295 (511)
T 2oap_1          257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED  295 (511)
T ss_dssp             HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence            358999999999999999999999998877777544433

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.47  E-value=0.00045  Score=64.72  Aligned_cols=77  Identities=23%  Similarity=0.470  Sum_probs=47.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH-HHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE-QALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~-e~~~~~~~l~  193 (271)
                      |.++..-+.|.||||+|||++++.++...   +.+.++++..     .+..       .+    ....+ .+...+.. .
T Consensus       234 g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~-----~l~~-------~~----~g~~~~~~~~~f~~-A  293 (489)
T 3hu3_A          234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP-----EIMS-------KL----AGESESNLRKAFEE-A  293 (489)
T ss_dssp             TCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHH-----HHHT-------SC----TTHHHHHHHHHHHH-H
T ss_pred             CCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEch-----Hhhh-------hh----cchhHHHHHHHHHH-H
Confidence            46677789999999999999999997654   4556666531     1110       00    00111 12222222 2


Q ss_pred             hcCCccEEEEcchhhhcC
Q 024152          194 RSGSVDVVVVDSVAALVP  211 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~  211 (271)
                      ....+..++||.+..+.+
T Consensus       294 ~~~~p~iLfLDEId~l~~  311 (489)
T 3hu3_A          294 EKNAPAIIFIDELDAIAP  311 (489)
T ss_dssp             HHTCSEEEEEESHHHHCB
T ss_pred             HhcCCcEEEecchhhhcc
Confidence            345678999999988875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.46  E-value=6.8e-05  Score=59.54  Aligned_cols=27  Identities=22%  Similarity=0.438  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .|.+++|.|+|||||||++..++....
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            467999999999999999999988653

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.45  E-value=0.0012  Score=59.75  Aligned_cols=76  Identities=25%  Similarity=0.353  Sum_probs=45.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG  196 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~  196 (271)
                      .++.-++|.|+||+|||+|+..++...   +..+++++........    .|           .. +..+..+.......
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~----~g-----------~~-~~~~~~~~~~a~~~  206 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSKY----VG-----------EG-EKLVRALFAVAREL  206 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC----------------------C-HHHHHHHHHHHHHS
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhccc----cc-----------hH-HHHHHHHHHHHHhc
Confidence            356789999999999999999997653   4566666654332210    00           01 12222222223345


Q ss_pred             CccEEEEcchhhhcC
Q 024152          197 SVDVVVVDSVAALVP  211 (271)
Q Consensus       197 ~~~lvvID~l~~~~~  211 (271)
                      .+.+++||.+..+..
T Consensus       207 ~~~il~iDEid~l~~  221 (389)
T 3vfd_A          207 QPSIIFIDQVDSLLC  221 (389)
T ss_dssp             SSEEEEEETGGGGC-
T ss_pred             CCeEEEEECchhhcc
Confidence            678999999988764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.45  E-value=9.1e-05  Score=61.44  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=34.1

Q ss_pred             cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +..|...+.  |+|+...++|+||||+||||+++.++..+
T Consensus        45 ~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           45 LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            677888887  89988889999999999999999998876

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.45  E-value=5.4e-05  Score=66.52  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      +..|++++|+|+||+|||||++.++ ...+..|.|.+
T Consensus       162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~  197 (302)
T 2yv5_A          162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE  197 (302)
T ss_dssp             HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred             hccCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence            3368999999999999999999999 77778887655

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.43  E-value=8.4e-05  Score=59.87  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=25.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQ  146 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~  146 (271)
                      ++++|+|++|||||||+..+++...+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            579999999999999999999999987

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.42  E-value=0.00017  Score=58.81  Aligned_cols=36  Identities=17%  Similarity=0.185  Sum_probs=31.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      ..+.|.|+||+|||+|+..++..+...+.+++|++.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~   90 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV   90 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence            678999999999999999999988877778888764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.41  E-value=9.3e-05  Score=59.38  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=26.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      .+.+| +++|+|+||+||||++..|...+..
T Consensus        23 ~~~~g-~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           23 PFSKG-FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             ECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             ecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            46678 9999999999999999999887653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.40  E-value=7.8e-05  Score=61.26  Aligned_cols=29  Identities=34%  Similarity=0.312  Sum_probs=26.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -+++|.+++|.|+||+||||++..++...
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            57789999999999999999999988754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.40  E-value=6.4e-05  Score=69.13  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=28.1

Q ss_pred             HHHHhcCCCCCCCcE--EEEEcCCCCcHHHHHHHHHHH
Q 024152          107 LDIALGTGGLPKGRV--VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       107 LD~~l~~GGl~~G~l--i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      |+.+.-  -+++|++  ++|+|+||+|||||++.+++.
T Consensus        30 L~~vsl--~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNK--SVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHH--SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCce--EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            554443  6779999  999999999999999999885

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.38  E-value=0.00036  Score=65.47  Aligned_cols=36  Identities=39%  Similarity=0.506  Sum_probs=28.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      -+++|  ++|+||||+|||+|++.+++...   .+.++++.
T Consensus        62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g   97 (499)
T 2dhr_A           62 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASG   97 (499)
T ss_dssp             CCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred             CCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence            45566  99999999999999999998763   34455654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.36  E-value=0.0001  Score=62.39  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++++++|.|+|||||||+++.++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~   50 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQN   50 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999943

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.34  E-value=0.00022  Score=60.02  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=32.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      ...+|.++.|.|+||+||||++..++..... +..++..
T Consensus        22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            5669999999999999999999999998887 6665543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.34  E-value=0.00023  Score=60.30  Aligned_cols=28  Identities=50%  Similarity=0.723  Sum_probs=24.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .+++|  ++|.||||+|||||++.+++...
T Consensus        47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             CCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence            56677  99999999999999999998764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.34  E-value=0.00051  Score=60.26  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=26.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      |.++.|.|++|+|||||+..++...    + ++|++.
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~~   62 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNER----P-GILIDC   62 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHS----S-EEEEEH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHc----C-cEEEEe
Confidence            4799999999999999999988654    2 677764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.34  E-value=7.1e-05  Score=67.36  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CCCCC--CcEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 024152          114 GGLPK--GRVVEIYGPEASGKTTLALHVIAEAQRQG  147 (271)
Q Consensus       114 GGl~~--G~li~I~G~~G~GKTtl~~~ia~~~~~~~  147 (271)
                      --+.+  |+.++|+|+||||||||++.+++...+..
T Consensus       163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            36677  99999999999999999999999988876

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.34  E-value=4.9e-05  Score=66.71  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF  152 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~  152 (271)
                      ..|++++|.|+||+|||||++.+++...+..|.+.+
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~  202 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  202 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence            368999999999999999999999998888887655

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.33  E-value=0.00014  Score=59.94  Aligned_cols=28  Identities=7%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .+|.+++|+||+|+|||||+..++....
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3799999999999999999999987653

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.32  E-value=0.0019  Score=53.07  Aligned_cols=124  Identities=17%  Similarity=0.191  Sum_probs=72.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC---HHHHHHcCCcCCcceecCCCC---HH-------HH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD---PSLAETIGVKTENLLLAQPDC---GE-------QA  185 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~---~~~~~~~g~~~~~~~~~~~~~---~~-------e~  185 (271)
                      .++.|.+.||.||||.+.-++..++..+.+|+|+..-.. ..   ......+++...........+   .+       ..
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~  108 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV  108 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence            478888999999999999999999999889999864322 11   233444443322211111111   11       12


Q ss_pred             HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          186 LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       186 ~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      +..+++.+.....+++|+|.+.......-+.              ..+.+..|.  .+-.+..||++.......
T Consensus       109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~--------------~~ev~~~l~--~Rp~~~~vIlTGr~ap~~  166 (196)
T 1g5t_A          109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP--------------LEEVISALN--ARPGHQTVIITGRGCHRD  166 (196)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC--------------HHHHHHHHH--TSCTTCEEEEECSSCCHH
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCccccCCCCC--------------HHHHHHHHH--hCcCCCEEEEECCCCcHH
Confidence            3334445556779999999997653211111              112333331  244578899988776443

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.31  E-value=0.00083  Score=60.49  Aligned_cols=89  Identities=15%  Similarity=0.139  Sum_probs=54.7

Q ss_pred             CCcEEEE--EcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCH-----HHHHHcCCcCCcceecCCCCHHH
Q 024152          118 KGRVVEI--YGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       118 ~G~li~I--~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~-----~~~~~~g~~~~~~~~~~~~~~~e  184 (271)
                      .+..+.|  .|++|+|||||+..++......      +..++|++.......     .+...++....    ....+..+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~  124 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALD  124 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHH
Confidence            4567888  9999999999999999877653      335777774322221     22334443221    01223455


Q ss_pred             HHHHHHHHHh-cCCccEEEEcchhhhc
Q 024152          185 ALSLVDTLIR-SGSVDVVVVDSVAALV  210 (271)
Q Consensus       185 ~~~~~~~l~~-~~~~~lvvID~l~~~~  210 (271)
                      +...+..... .....+++||.++.+.
T Consensus       125 ~~~~l~~~l~~~~~~~llvlDe~~~l~  151 (412)
T 1w5s_A          125 ILKALVDNLYVENHYLLVILDEFQSML  151 (412)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence            5554444332 3457799999998875

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.31  E-value=0.002  Score=56.43  Aligned_cols=67  Identities=15%  Similarity=0.185  Sum_probs=43.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhc---
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS---  195 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~---  195 (271)
                      ..++.+.||||+|||+++..++...   +..+++++...                      ...+.+...+......   
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~----------------------~~~~~i~~~~~~~~~~~~~  102 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD----------------------CKIDFVRGPLTNFASAASF  102 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT----------------------CCHHHHHTHHHHHHHBCCC
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc----------------------cCHHHHHHHHHHHHhhccc
Confidence            3578999999999999999998765   33566665322                      1123333333332221   


Q ss_pred             -CCccEEEEcchhhhc
Q 024152          196 -GSVDVVVVDSVAALV  210 (271)
Q Consensus       196 -~~~~lvvID~l~~~~  210 (271)
                       ...++++||.+..+.
T Consensus       103 ~~~~~vliiDEi~~l~  118 (324)
T 3u61_B          103 DGRQKVIVIDEFDRSG  118 (324)
T ss_dssp             SSCEEEEEEESCCCGG
T ss_pred             CCCCeEEEEECCcccC
Confidence             257899999987764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.30  E-value=0.00015  Score=59.58  Aligned_cols=28  Identities=29%  Similarity=0.436  Sum_probs=25.5

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..+|.+++|+|+||+||||++..++...
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            5589999999999999999999998765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.28  E-value=0.00015  Score=61.80  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|.+++|.|+|||||||+++.++..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~   50 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAES   50 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            48999999999999999999999943

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.27  E-value=0.00035  Score=56.32  Aligned_cols=39  Identities=23%  Similarity=0.150  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      |...-.+++|+|++|+|||||+..++......+.++..+
T Consensus         2 ~~~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i   40 (174)
T 1np6_A            2 GKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI   40 (174)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence            344556899999999999999999999877665444444

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.26  E-value=0.00026  Score=56.81  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=27.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +|.++.|.|+||+||||++..++......+-...+++
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~   38 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS   38 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence            3579999999999999999999987654332234444

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.26  E-value=0.00032  Score=60.38  Aligned_cols=28  Identities=50%  Similarity=0.723  Sum_probs=24.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      -+++|  ++|+||||+|||||++.+++...
T Consensus        71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             CCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence            56677  99999999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.25  E-value=0.00024  Score=65.54  Aligned_cols=37  Identities=32%  Similarity=0.372  Sum_probs=33.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      .+++|+|+||+||||++..++..++..+.+|++++..
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            5999999999999999999999999888889998865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.24  E-value=0.00018  Score=57.76  Aligned_cols=26  Identities=35%  Similarity=0.478  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +|.+++|.|+|||||||++..++...
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            67899999999999999999998654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.24  E-value=0.00032  Score=56.29  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +|.|.|+||+||||++..++..+...+-.+.+++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~   36 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence            6899999999999999999988765444566664

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.23  E-value=0.00033  Score=57.13  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      +|.+++|.|+||+||||++..++......+ .++..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~   37 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT   37 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence            467999999999999999999998776544 55443

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=97.23  E-value=0.00031  Score=65.20  Aligned_cols=54  Identities=28%  Similarity=0.517  Sum_probs=45.3

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEE
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFI  153 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~  153 (271)
                      .+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+..++.+.+...+ -++|.
T Consensus       134 ~e~l~TGir~ID~l~p---igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~  188 (482)
T 2ck3_D          134 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  188 (482)
T ss_dssp             CCEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred             CcCCccceEEEecccc---cccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence            4689999999999985   669999999999999999999999999765443 34443

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.22  E-value=0.00037  Score=59.62  Aligned_cols=38  Identities=11%  Similarity=0.154  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      ++.+|.|.|.||+||||++..++..+...+-.+++++.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~   40 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS   40 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence            56799999999999999999999876655555554553

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.22  E-value=0.0018  Score=55.39  Aligned_cols=36  Identities=31%  Similarity=0.217  Sum_probs=27.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .++..-+.|.||||+|||+++..++...   +.+.+.++
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~   96 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC   96 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence            3456689999999999999999998864   33444443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.21  E-value=0.00025  Score=70.13  Aligned_cols=78  Identities=27%  Similarity=0.392  Sum_probs=47.7

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHH-HHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA-ETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~-~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      .|+.+..=++++||||+|||.++..+|....   .+  |+...   ...+. ..+|           .+ +..+..+-..
T Consensus       506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---~~--f~~v~---~~~l~s~~vG-----------es-e~~vr~lF~~  565 (806)
T 3cf2_A          506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---AN--FISIK---GPELLTMWFG-----------ES-EANVREIFDK  565 (806)
T ss_dssp             SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---CE--EEECC---HHHHHTTTCS-----------SC-HHHHHHHHHH
T ss_pred             cCCCCCceEEEecCCCCCchHHHHHHHHHhC---Cc--eEEec---cchhhccccc-----------hH-HHHHHHHHHH
Confidence            4777777899999999999999999987653   22  33211   01111 1111           12 2333322233


Q ss_pred             HhcCCccEEEEcchhhhcC
Q 024152          193 IRSGSVDVVVVDSVAALVP  211 (271)
Q Consensus       193 ~~~~~~~lvvID~l~~~~~  211 (271)
                      .++..+..++||.+..+.+
T Consensus       566 Ar~~~P~IifiDEiDsl~~  584 (806)
T 3cf2_A          566 ARQAAPCVLFFDELDSIAK  584 (806)
T ss_dssp             HHTTCSEEEECSCGGGCC-
T ss_pred             HHHcCCceeechhhhHHhh
Confidence            3456799999999998875

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.20  E-value=2.2e-05  Score=66.26  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      ++++|.||||||||||+..|++...+..|.|.|.
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~   61 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFR   61 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC---
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCeEEEC
Confidence            6888999999999999999999999888875543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.19  E-value=0.0063  Score=53.50  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      |-..-+..|...+. .|-.+ . +.|.||||+||||+++.++..+.
T Consensus        41 g~~~~~~~l~~~l~-~~~~~-~-~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           41 AQDHAVTVLKKTLK-SANLP-H-MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             SCCTTHHHHHHHTT-CTTCC-C-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh-cCCCC-E-EEEECCCCCCHHHHHHHHHHHhC
Confidence            33334556666665 22222 2 89999999999999999999865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.16  E-value=0.00029  Score=56.10  Aligned_cols=26  Identities=15%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+.++.|.|+||+||||++..++...
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            35799999999999999999988754

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.15  E-value=0.0032  Score=54.55  Aligned_cols=23  Identities=30%  Similarity=0.205  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +.|.||||+|||+++..++..+.
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhc
Confidence            89999999999999999998764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.15  E-value=0.00032  Score=58.16  Aligned_cols=26  Identities=31%  Similarity=0.431  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+.+++|.|+|||||||++..++...
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999999876

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0012  Score=58.41  Aligned_cols=88  Identities=16%  Similarity=0.098  Sum_probs=50.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcC------C-eEEEEcCCCCCCH-----HHHHHc-CCcCCcceecCCCCHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQG------G-YCVFIDAEHALDP-----SLAETI-GVKTENLLLAQPDCGEQ  184 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~------g-~v~~~~~e~~~~~-----~~~~~~-g~~~~~~~~~~~~~~~e  184 (271)
                      ++..+.|.||||+|||++++.++..+....      . .++++++......     .+.+.+ |.   +  .......+.
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~---~--~~~~~~~~~  118 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE---N--LCGDISLEA  118 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC---C----CCCCHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC---C--CCchHHHHH
Confidence            667889999999999999999999886421      1 4566775443332     222333 21   1  111122333


Q ss_pred             HHHHHHHH-HhcCCccEEEEcchhhhc
Q 024152          185 ALSLVDTL-IRSGSVDVVVVDSVAALV  210 (271)
Q Consensus       185 ~~~~~~~l-~~~~~~~lvvID~l~~~~  210 (271)
                      +...+... .......++++|.+..+.
T Consensus       119 L~~~f~~~~~~~~~~~ii~lDE~d~l~  145 (318)
T 3te6_A          119 LNFYITNVPKAKKRKTLILIQNPENLL  145 (318)
T ss_dssp             HHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred             HHHHHHHhhhccCCceEEEEecHHHhh
Confidence            33333332 123456789999887664

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.14  E-value=5.7e-05  Score=61.78  Aligned_cols=29  Identities=17%  Similarity=0.188  Sum_probs=25.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+++|..++|+|+||+|||||++.+++..
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999999998765

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.13  E-value=0.0042  Score=58.35  Aligned_cols=41  Identities=22%  Similarity=0.189  Sum_probs=30.3

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCC--eEEEEcCC
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGG--YCVFIDAE  156 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g--~v~~~~~e  156 (271)
                      +.++.-++|+|.+|+|||++++.++..+..  ..+  .++.++..
T Consensus       164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK  208 (512)
T 2ius_A          164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK  208 (512)
T ss_dssp             GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred             cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence            557889999999999999999999876543  233  34445543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.13  E-value=0.00031  Score=55.38  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +++|.|+|||||||++..++...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999998765

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.12  E-value=0.0006  Score=55.82  Aligned_cols=37  Identities=16%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      .+|.+|+|.|+|||||||++..++..+...+-.+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~   43 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   43 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence            3688999999999999999999998876554454433

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=97.12  E-value=0.00036  Score=65.01  Aligned_cols=55  Identities=22%  Similarity=0.424  Sum_probs=45.9

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEc
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFID  154 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~  154 (271)
                      .+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+..++.+.+... +-++|..
T Consensus       146 ~e~l~TGirvID~l~p---igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~  201 (498)
T 1fx0_B          146 LSIFETGIKVVNLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG  201 (498)
T ss_dssp             CCCCCCSCTTHHHHSC---CCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE
T ss_pred             ccccccceeEeeeecc---cccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE
Confidence            4678999999999986   66999999999999999999999999976543 3344443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.11  E-value=0.00058  Score=54.84  Aligned_cols=35  Identities=34%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .++.|+|++|+|||||+..++..+...+.+|..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            47999999999999999999998887766666665

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.10  E-value=0.00033  Score=57.16  Aligned_cols=25  Identities=16%  Similarity=0.302  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..+++|.|+|||||||++..++...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.10  E-value=0.00035  Score=60.97  Aligned_cols=30  Identities=17%  Similarity=0.278  Sum_probs=27.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ  146 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~  146 (271)
                      .++.+++|+|++|||||||+..++....+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            478899999999999999999999988764

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.09  E-value=0.0034  Score=59.37  Aligned_cols=92  Identities=11%  Similarity=0.099  Sum_probs=55.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH----HHhhcCCeEEEEcCCCCC--C-----HHHHHHcCCcCC--cceecCCCCHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIA----EAQRQGGYCVFIDAEHAL--D-----PSLAETIGVKTE--NLLLAQPDCGEQ  184 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~----~~~~~~g~v~~~~~e~~~--~-----~~~~~~~g~~~~--~~~~~~~~~~~e  184 (271)
                      ...++.|.|..|+||||||..++.    .+...-..++|++.....  .     ..+...++....  .+......+.++
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~  230 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV  230 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence            457999999999999999999885    233333456788654432  1     123444443321  111122234556


Q ss_pred             HHHHHHHHHhcCCccEEEEcchhhh
Q 024152          185 ALSLVDTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       185 ~~~~~~~l~~~~~~~lvvID~l~~~  209 (271)
                      +...++......+.-++|+|.+...
T Consensus       231 l~~~l~~~L~~~kr~LlVLDdv~~~  255 (549)
T 2a5y_B          231 LKRMICNALIDRPNTLFVFDDVVQE  255 (549)
T ss_dssp             HHHHHHHHHTTSTTEEEEEEEECCH
T ss_pred             HHHHHHHHHcCCCcEEEEEECCCCc
Confidence            6666666554333678999987543

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.09  E-value=0.00013  Score=69.62  Aligned_cols=38  Identities=24%  Similarity=0.195  Sum_probs=32.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .+.+++|.|+||+||||++..++..+...+.+|++...
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap  240 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP  240 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence            36799999999999999999999888877778777654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.09  E-value=0.0023  Score=51.86  Aligned_cols=81  Identities=17%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCcc
Q 024152          121 VVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD  199 (271)
Q Consensus       121 li~I~-G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~  199 (271)
                      ++.|+ +..|+||||++.+++..++..+.+|++++......  ....++.....+.+..... +.+...+..+.  ...+
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~--~~yD   77 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS-EKDVYGIRKDL--ADYD   77 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS-HHHHHTHHHHT--TTSS
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc-HHHHHHHHHhc--CCCC
Confidence            45555 77899999999999999998888999999763322  2222232333333332222 44444444443  3589


Q ss_pred             EEEEcch
Q 024152          200 VVVVDSV  206 (271)
Q Consensus       200 lvvID~l  206 (271)
                      +++||..
T Consensus        78 ~viiD~~   84 (206)
T 4dzz_A           78 FAIVDGA   84 (206)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999964

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.09  E-value=0.00068  Score=55.42  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC  150 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v  150 (271)
                      ...+|.+++|.|+|||||||++..++..+....-.+
T Consensus         6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~   41 (212)
T 2wwf_A            6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV   41 (212)
T ss_dssp             CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence            345788999999999999999999998765443344

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.07  E-value=0.00033  Score=62.19  Aligned_cols=24  Identities=42%  Similarity=0.472  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +.++|.||||+|||||++.+++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            679999999999999999999987

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.07  E-value=0.00043  Score=55.83  Aligned_cols=27  Identities=41%  Similarity=0.556  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      .++|.+++|.|+|||||||++..++..
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            457889999999999999999998875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.06  E-value=0.00031  Score=59.99  Aligned_cols=37  Identities=24%  Similarity=0.234  Sum_probs=30.0

Q ss_pred             HHHHHhcCCCCCC---CcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          106 ALDIALGTGGLPK---GRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       106 ~LD~~l~~GGl~~---G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      -|+.+.-  -+.+   |++++|.|+|||||||++..++....
T Consensus        34 ~l~~~~~--~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           34 ILKKKAE--EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             HHHHHHH--TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             hhhhhhh--hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4444443  5668   99999999999999999999998663

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.05  E-value=0.0011  Score=58.08  Aligned_cols=42  Identities=21%  Similarity=0.166  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL  159 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~  159 (271)
                      .+.-+.|.|+||+|||+++..++......+++.++++.....
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~   65 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN   65 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence            345688999999999999999988766556666777655443

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.05  E-value=0.00068  Score=59.59  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDA  155 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~  155 (271)
                      +.-+.|.||||+|||+|+..++..+. ..+.+|+|+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~  189 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF  189 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence            67899999999999999999999888 77778888764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.05  E-value=0.0023  Score=59.21  Aligned_cols=66  Identities=24%  Similarity=0.274  Sum_probs=41.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH---HHHHHHHHHHhcC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE---QALSLVDTLIRSG  196 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~---e~~~~~~~l~~~~  196 (271)
                      .-++|.||||+|||||+..++....   ...+.++..                      .....   +.+..+.......
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~---~~f~~l~a~----------------------~~~~~~ir~~~~~a~~~~~~~  105 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN---ADVERISAV----------------------TSGVKEIREAIERARQNRNAG  105 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT---CEEEEEETT----------------------TCCHHHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC---CCeEEEEec----------------------cCCHHHHHHHHHHHHHhhhcC
Confidence            4599999999999999999988653   232333321                      11222   2333333333345


Q ss_pred             CccEEEEcchhhhc
Q 024152          197 SVDVVVVDSVAALV  210 (271)
Q Consensus       197 ~~~lvvID~l~~~~  210 (271)
                      ...+++||.+..+.
T Consensus       106 ~~~iLfIDEI~~l~  119 (447)
T 3pvs_A          106 RRTILFVDEVHRFN  119 (447)
T ss_dssp             CCEEEEEETTTCC-
T ss_pred             CCcEEEEeChhhhC
Confidence            67899999997764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.05  E-value=0.00035  Score=55.51  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .++.|.|+||+||||++..++.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4799999999999999999887

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=97.04  E-value=0.00048  Score=62.42  Aligned_cols=54  Identities=17%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-C-eEEEEc
Q 024152           98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-G-YCVFID  154 (271)
Q Consensus        98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g-~v~~~~  154 (271)
                      +.+.||+..+|.++.   +-+|+-.+|.|++|+|||+|+.+|+.++.... + .++|..
T Consensus       157 e~~~tGiraID~l~P---igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~l  212 (427)
T 3l0o_A          157 DPKIYSTRLIDLFAP---IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILL  212 (427)
T ss_dssp             STTCHHHHHHHHHSC---CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             cchhccchhhhhccc---ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEE
Confidence            567899999999986   66999999999999999999999999887543 3 445543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.01  E-value=0.00047  Score=53.34  Aligned_cols=25  Identities=20%  Similarity=0.033  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +.-+.|.|+||+|||+++..++...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhC
Confidence            3458899999999999998877543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.01  E-value=0.0014  Score=63.74  Aligned_cols=30  Identities=30%  Similarity=0.295  Sum_probs=26.5

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      ++++..++|+|++|+|||||+..+++....
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~   35 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGA   35 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence            568999999999999999999999976553

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.00  E-value=0.00037  Score=58.29  Aligned_cols=29  Identities=28%  Similarity=0.392  Sum_probs=26.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -+.+..+++|.|||||||+|.|..++...
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56689999999999999999999998765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.00  E-value=0.00051  Score=55.06  Aligned_cols=26  Identities=15%  Similarity=0.181  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+.+++|.|+|||||||++..++...
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.99  E-value=0.00054  Score=55.26  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++.+++|.|+|||||||++..++...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            67899999999999999999998755

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=96.99  E-value=0.0027  Score=59.21  Aligned_cols=55  Identities=29%  Similarity=0.466  Sum_probs=41.8

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      -+.+.||+..+|.++.   +-+|+-.+|.|++|+|||++++....+....+..++|..
T Consensus       143 ~epl~TGikaID~l~P---igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~  197 (513)
T 3oaa_A          143 DQPVQTGYKAVDSMIP---IGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVA  197 (513)
T ss_dssp             CCBCCCSCHHHHHHSC---CBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEE
T ss_pred             Ccccccceeeeccccc---cccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEE
Confidence            4678999999999986   669999999999999999997544443333333455554

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.98  E-value=0.00038  Score=54.71  Aligned_cols=20  Identities=35%  Similarity=0.473  Sum_probs=18.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHV  139 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~i  139 (271)
                      .+++|.|+|||||||++..+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999988

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.98  E-value=0.00089  Score=56.64  Aligned_cols=40  Identities=20%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      .+.-++++.|.+|+||||++.+++..++ .+.+|.+++.+.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~   51 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT   51 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            4567999999999999999999999998 777888888653

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.98  E-value=0.006  Score=53.58  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=39.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCcc
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD  199 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~  199 (271)
                      ..+.|.|+||+|||+++..++...   +.+.+.++....                     ....++.....   ......
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~---------------------~~~~~~~~~~~---~~~~~~  108 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMI---------------------EKSGDLAAILT---NLSEGD  108 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGC---------------------CSHHHHHHHHH---TCCTTC
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhc---------------------cchhHHHHHHH---hccCCC
Confidence            348999999999999999997653   334444432111                     01222222221   234678


Q ss_pred             EEEEcchhhhc
Q 024152          200 VVVVDSVAALV  210 (271)
Q Consensus       200 lvvID~l~~~~  210 (271)
                      .++||.+..+.
T Consensus       109 vl~lDEi~~l~  119 (338)
T 3pfi_A          109 ILFIDEIHRLS  119 (338)
T ss_dssp             EEEEETGGGCC
T ss_pred             EEEEechhhcC
Confidence            99999998775

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.97  E-value=0.00082  Score=59.75  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      ..+.|.||+|+||||++..++.....
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            47899999999999999999887753

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=96.96  E-value=0.0014  Score=61.05  Aligned_cols=55  Identities=27%  Similarity=0.458  Sum_probs=40.9

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      -+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|++....+.+..+..++|..
T Consensus       143 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~  197 (502)
T 2qe7_A          143 HEPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVA  197 (502)
T ss_dssp             CSBCCCSCHHHHHSSC---CBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEE
T ss_pred             CCccccceeecccccc---cccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEE
Confidence            4678999999999986   669999999999999999997644433332222345544

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.95  E-value=0.00052  Score=55.11  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++.+++|.|+|||||||++..++...
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999988654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.95  E-value=0.00028  Score=57.86  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      +++|.|++||||||++..++..+...+..|.++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~   34 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            789999999999999999998887554444443

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.95  E-value=0.00058  Score=54.56  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=24.3

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +..+.+++|.|+||+||||++..++...
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            3467889999999999999999988765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.95  E-value=0.0024  Score=63.71  Aligned_cols=39  Identities=26%  Similarity=0.229  Sum_probs=32.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA  158 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~  158 (271)
                      ..+.|.||||+|||++++.++......+.+.++++....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~  627 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY  627 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence            478999999999999999999988766667778875433

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.94  E-value=0.00046  Score=56.31  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      +++|.|+|||||||++..++.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999988

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.94  E-value=0.00045  Score=56.52  Aligned_cols=21  Identities=38%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      +++|.|+|||||||++..++.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999986

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.93  E-value=0.00054  Score=58.42  Aligned_cols=23  Identities=43%  Similarity=0.774  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +++|+|+||+|||||+..++...
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            78999999999999999998765

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.92  E-value=0.0011  Score=59.88  Aligned_cols=42  Identities=21%  Similarity=0.262  Sum_probs=35.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL  159 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~  159 (271)
                      .+.-+.|+|++|+|||||++.++......++.+++++.....
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~   75 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY   75 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence            566789999999999999999999888888888888865443

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.91  E-value=0.0056  Score=51.16  Aligned_cols=29  Identities=31%  Similarity=0.386  Sum_probs=23.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +..|+.+++.|++|+||||++..++....
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~  101 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFILDDF  101 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHhcch
Confidence            34689999999999999998777765543

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.90  E-value=0.0029  Score=55.98  Aligned_cols=88  Identities=16%  Similarity=0.061  Sum_probs=49.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHH--cCCcCCcceec-----CCCCHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET--IGVKTENLLLA-----QPDCGEQALSLVDT  191 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~--~g~~~~~~~~~-----~~~~~~e~~~~~~~  191 (271)
                      ...+.+.||||+|||++++.++..+.......   ........ .++.  .+..++-..+.     .....++++.....
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~~~c~~c~-~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~   99 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQQPQG---HKSCGHCR-GCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEK   99 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---TBCCSCSH-HHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHH
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---CCCCCCCH-HHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHH
Confidence            34699999999999999999998776432110   00001111 1111  12112211121     12456677665555


Q ss_pred             HHh---cCCccEEEEcchhhhc
Q 024152          192 LIR---SGSVDVVVVDSVAALV  210 (271)
Q Consensus       192 l~~---~~~~~lvvID~l~~~~  210 (271)
                      +..   ..+.++++||....+.
T Consensus       100 ~~~~~~~~~~kvviIdead~l~  121 (334)
T 1a5t_A          100 LNEHARLGGAKVVWVTDAALLT  121 (334)
T ss_dssp             TTSCCTTSSCEEEEESCGGGBC
T ss_pred             HhhccccCCcEEEEECchhhcC
Confidence            432   2357899999988775

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.90  E-value=0.0012  Score=58.99  Aligned_cols=39  Identities=18%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      ..-+++|+|+||+|||||+.+++......+.+|.+++..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            556899999999999999999999988777788887754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.90  E-value=0.0011  Score=53.11  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      +++|.|+|||||||++..++..+...+-.++..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~   34 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY   34 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            689999999999999999998775544444443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.88  E-value=0.00074  Score=55.90  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +|.+++|.|+|||||||++..++...
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56799999999999999999998765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.86  E-value=0.00078  Score=54.71  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +|.+|+|.|++||||||++..++..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999988765

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.85  E-value=0.0089  Score=56.30  Aligned_cols=37  Identities=19%  Similarity=0.167  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      ...+|+++|.||+||||++..++..+....-.+.+|+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s   70 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN   70 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence            4569999999999999999999987765544455555

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.85  E-value=0.00055  Score=59.54  Aligned_cols=36  Identities=31%  Similarity=0.415  Sum_probs=27.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .++.+++|+|+||+||||++..++....   +..++++.
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence            3678999999999999999999876542   23466664

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.84  E-value=0.00058  Score=64.75  Aligned_cols=27  Identities=33%  Similarity=0.524  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +|..++|.||||+|||||++.++....
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            799999999999999999999998774

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.84  E-value=0.00088  Score=54.55  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..+.+|+|.|+||+||||++..++...
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356799999999999999999998765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.82  E-value=0.00047  Score=58.65  Aligned_cols=38  Identities=29%  Similarity=0.309  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      .+++.++.|.|+|||||||++..++....   ..+++++.+
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D   66 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGD   66 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecH
Confidence            34678999999999999999999987653   234555543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.81  E-value=0.004  Score=62.12  Aligned_cols=78  Identities=17%  Similarity=0.219  Sum_probs=41.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHH-HHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQ-------GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ-ALSLVDT  191 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~-------~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e-~~~~~~~  191 (271)
                      .-++|+||||+|||+++..++..+...       +..+++++......       |..       .....++ +...+..
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------g~~-------~~g~~~~~l~~~~~~  257 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GAK-------YRGEFEERLKAVIQE  257 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------cCc-------cchHHHHHHHHHHHH
Confidence            357899999999999999999988652       34566665422110       000       0012222 2233333


Q ss_pred             HHhcCCccEEEEcchhhhcC
Q 024152          192 LIRSGSVDVVVVDSVAALVP  211 (271)
Q Consensus       192 l~~~~~~~lvvID~l~~~~~  211 (271)
                      .....+..+++||.+..+.+
T Consensus       258 ~~~~~~~~iL~IDEi~~l~~  277 (854)
T 1qvr_A          258 VVQSQGEVILFIDELHTVVG  277 (854)
T ss_dssp             HHTTCSSEEEEECCC-----
T ss_pred             HHhcCCCeEEEEecHHHHhc
Confidence            33233567999999988763

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.81  E-value=0.00054  Score=54.68  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=18.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++.++.|.|.|||||||++..++...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56799999999999999999987643

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=96.81  E-value=0.0017  Score=61.66  Aligned_cols=102  Identities=17%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH---hh-cCCeEEEEcCCCCCCHH-------HHHHcCCcCC
Q 024152          104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA---QR-QGGYCVFIDAEHALDPS-------LAETIGVKTE  172 (271)
Q Consensus       104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~---~~-~~g~v~~~~~e~~~~~~-------~~~~~g~~~~  172 (271)
                      +..|...+. .+-....++.|.|++|+|||||+..++...   .. ....++|++........       +...++... 
T Consensus       133 l~~L~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~-  210 (591)
T 1z6t_A          133 VNAIQQKLS-KLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDE-  210 (591)
T ss_dssp             HHHHHHHHT-TSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSC-
T ss_pred             HHHHHHHHh-cccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhcccc-
Confidence            445555554 112346799999999999999999987643   22 22357777643321111       112222100 


Q ss_pred             cceecCCCCHHHHHHHHHHHHhc-CCccEEEEcchh
Q 024152          173 NLLLAQPDCGEQALSLVDTLIRS-GSVDVVVVDSVA  207 (271)
Q Consensus       173 ~~~~~~~~~~~e~~~~~~~l~~~-~~~~lvvID~l~  207 (271)
                      ........+.++....++..... .+.-++|+|.+.
T Consensus       211 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~  246 (591)
T 1z6t_A          211 SFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW  246 (591)
T ss_dssp             CSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred             ccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence            00111234556666666655443 356788898863

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.80  E-value=0.00068  Score=62.23  Aligned_cols=30  Identities=20%  Similarity=0.287  Sum_probs=26.3

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      +.+|++++|+||||+|||||+..|+....+
T Consensus        23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            457899999999999999999999886653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.80  E-value=0.00096  Score=55.94  Aligned_cols=29  Identities=31%  Similarity=0.365  Sum_probs=24.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..++|.+++|.|+||+||||++..++..+
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            46689999999999999999999998754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.80  E-value=0.00072  Score=53.80  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+.|.|+|||||||++..++...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.80  E-value=0.0026  Score=62.53  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .+.|.||||+|||+++..++......+.+.++++.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~  557 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDM  557 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec
Confidence            69999999999999999999988766667777764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.79  E-value=0.00084  Score=54.34  Aligned_cols=24  Identities=21%  Similarity=0.469  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +|+|.|++||||||++..++..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999988664

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.79  E-value=0.0009  Score=54.03  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++.+++|.|+|||||||++..++...
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            56799999999999999999998765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.77  E-value=0.0003  Score=62.07  Aligned_cols=25  Identities=36%  Similarity=0.380  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      =.+++|.|++|+|||||++.+++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3589999999999999999999875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.77  E-value=0.00085  Score=55.83  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=22.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +..++.+++|.|+|||||||++..++...
T Consensus         3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            3 ASARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             ----CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34567899999999999999999988643

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.76  E-value=0.0063  Score=52.94  Aligned_cols=66  Identities=18%  Similarity=0.184  Sum_probs=41.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCc
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV  198 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~  198 (271)
                      ...+.|.|+||+|||+++..++....   .++++++.....                     ...++...+..  .....
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~---------------------~~~~l~~~l~~--~~~~~   91 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGPAIE---------------------KPGDLAAILAN--SLEEG   91 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHT---CCEEEECTTTCC---------------------SHHHHHHHHTT--TCCTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeccccC---------------------ChHHHHHHHHH--hccCC
Confidence            35689999999999999999987652   345555432211                     12233222211  02356


Q ss_pred             cEEEEcchhhhc
Q 024152          199 DVVVVDSVAALV  210 (271)
Q Consensus       199 ~lvvID~l~~~~  210 (271)
                      ..++||.+..+.
T Consensus        92 ~~l~lDEi~~l~  103 (324)
T 1hqc_A           92 DILFIDEIHRLS  103 (324)
T ss_dssp             CEEEETTTTSCC
T ss_pred             CEEEEECCcccc
Confidence            799999988764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.75  E-value=0.001  Score=63.81  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=34.1

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      ..+...+.     .|+.++|.||||+|||||++.+++...+..+..+++
T Consensus        51 ~~l~~~i~-----~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~   94 (604)
T 3k1j_A           51 EVIKTAAN-----QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILV   94 (604)
T ss_dssp             HHHHHHHH-----TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEE
T ss_pred             hhcccccc-----CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEE
Confidence            44555554     778999999999999999999999887665433444

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.75  E-value=0.00088  Score=60.31  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=24.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -+++| +++|.||||+||||++..|+..+
T Consensus        20 ~~~~g-~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           20 EFQSG-ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             ECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            35677 89999999999999999888654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.75  E-value=0.0011  Score=51.93  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+++|.||||+||||++..|...+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            399999999999999999887654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.72  E-value=0.00097  Score=59.97  Aligned_cols=27  Identities=37%  Similarity=0.630  Sum_probs=24.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -+.+| +++|+||||+||||++..|...
T Consensus        23 ~~~~g-~~~i~G~nG~GKttll~ai~~~   49 (359)
T 2o5v_A           23 NFPEG-VTGIYGENGAGKTNLLEAAYLA   49 (359)
T ss_dssp             ECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence            56688 9999999999999999999874

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.70  E-value=0.00096  Score=53.40  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .++.|.|+|||||||++..++...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999998765

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.68  E-value=0.0011  Score=54.75  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +++|.|||||||+|.+..|+...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998765

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.68  E-value=0.0011  Score=54.79  Aligned_cols=26  Identities=31%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+.+|+|.|+|||||||++..++...
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998765

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.65  E-value=0.021  Score=49.96  Aligned_cols=72  Identities=17%  Similarity=0.119  Sum_probs=45.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh-
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR-  194 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~-  194 (271)
                      ...+++.||||+||||++..++..+...   ...+.+++.+.                    ....+++++........ 
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------~~~~id~ir~li~~~~~~   77 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGIDDIRTIKDFLNYS   77 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------------CCCCHHHHHHHHHHHhhc
Confidence            4589999999999999999998753211   11233332110                    12456666665554432 


Q ss_pred             --cCCccEEEEcchhhhc
Q 024152          195 --SGSVDVVVVDSVAALV  210 (271)
Q Consensus       195 --~~~~~lvvID~l~~~~  210 (271)
                        ..+.++++||....+.
T Consensus        78 p~~~~~kvviIdead~lt   95 (305)
T 2gno_A           78 PELYTRKYVIVHDCERMT   95 (305)
T ss_dssp             CSSSSSEEEEETTGGGBC
T ss_pred             cccCCceEEEeccHHHhC
Confidence              1346899999988775

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.65  E-value=0.0022  Score=53.33  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      .+|.+|.|.|++|+||||++..++..+...+-+|+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            4688999999999999999999998887666566544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.64  E-value=0.0012  Score=59.99  Aligned_cols=28  Identities=21%  Similarity=0.194  Sum_probs=26.3

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      |-+++|..++|+|+||+|||||++.+++
T Consensus        15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           15 GRPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3788999999999999999999999998

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.61  E-value=0.0015  Score=51.56  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++++|.|.|||||||++..++..+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998765

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.61  E-value=0.0014  Score=52.52  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..+++|.|+|||||||++..++...
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999988754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.59  E-value=0.011  Score=58.05  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=27.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .-+.|.||||+|||++++.++...   +.+.+.++.
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~  521 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDM  521 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEec
Confidence            368999999999999999999877   355666664

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.58  E-value=0.0014  Score=55.30  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .-++.|.|+|||||||++..++..+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.58  E-value=0.0015  Score=53.74  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .++|.|+|||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.57  E-value=0.0014  Score=54.26  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +|-+++|.|+|||||||++..++...
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998765

>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A

Probab=96.57  E-value=0.0006  Score=60.98  Aligned_cols=38  Identities=39%  Similarity=0.474  Sum_probs=34.3

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHH
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL  137 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~  137 (271)
                      -.-++||+++||.++|.||++.|.++.|.|+   |||+|+.
T Consensus        18 ~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~   55 (361)
T 4a8j_A           18 QPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHS   55 (361)
T ss_dssp             CEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHH
T ss_pred             CeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHH
Confidence            3568999999999997579999999999998   8999995

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=96.56  E-value=0.0027  Score=59.29  Aligned_cols=45  Identities=27%  Similarity=0.408  Sum_probs=38.1

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHH-HHHHHHh
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL-HVIAEAQ  144 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~-~ia~~~~  144 (271)
                      -+.+.||+..+|.++.   +-+|+-.+|.|++|+|||+|++ +|+....
T Consensus       143 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~q~~  188 (510)
T 2ck3_A          143 REPMQTGIKAVDSLVP---IGRGQRELIIGDRQTGKTSIAIDTIINQKR  188 (510)
T ss_dssp             CSBCCCSCHHHHHHSC---CBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred             Cccccccceeeccccc---cccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence            3678999999999986   6699999999999999999965 5555554

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.56  E-value=0.0016  Score=55.18  Aligned_cols=38  Identities=16%  Similarity=0.301  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAE  156 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e  156 (271)
                      --+++|.|++||||||++..++..+...     +..+++++..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D   64 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD   64 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence            3589999999999999999998854422     2346666654

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=96.56  E-value=0.0014  Score=60.49  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      -+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+.+|+.....
T Consensus       132 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~  177 (465)
T 3vr4_D          132 DEFIQTGISAIDHLNT---LVRGQKLPVFSGSGLPHKELAAQIARQATV  177 (465)
T ss_dssp             CCBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             ccccccCceEEecccc---cccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence            3578899999999985   669999999999999999999998877654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.55  E-value=0.0013  Score=53.01  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .++|+|+||+|||||++.+++...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            689999999999999999998654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.55  E-value=0.0011  Score=57.70  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      ++-+++|.|++||||||++..++..+...+-.+.+++...
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~   43 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA   43 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence            4568999999999999999999886654444466676543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.55  E-value=0.0017  Score=54.92  Aligned_cols=26  Identities=23%  Similarity=0.225  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++-+++|.|+|||||||++..++...
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            67799999999999999999998655

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.54  E-value=0.0014  Score=51.67  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .++.|.|+|||||||++..++..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.54  E-value=0.0013  Score=53.24  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .++|+|+||+|||||++.+++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999999863

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.52  E-value=0.0017  Score=52.74  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ...+|+|.|+|||||||++..++..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999988864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.52  E-value=0.0016  Score=52.70  Aligned_cols=25  Identities=28%  Similarity=0.280  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      +..+++|.|++||||||++..++..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3468999999999999999998874

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.52  E-value=0.0022  Score=53.82  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=28.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFI  153 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~----~g~v~~~  153 (271)
                      -..+|.+|.|.|++|+||||++..++..+...    +-+|++.
T Consensus        21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~   63 (227)
T 3v9p_A           21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT   63 (227)
T ss_dssp             --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence            45689999999999999999999999888765    5566544

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.50  E-value=0.0017  Score=53.51  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .+-+++|.|++||||||++..++.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999876

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=96.48  E-value=0.0044  Score=58.63  Aligned_cols=52  Identities=21%  Similarity=0.312  Sum_probs=42.6

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      -+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+.+|+.+..  .+-++|.
T Consensus       213 ~epl~TGirvID~l~P---igrGqr~~Ifgg~g~GKT~L~~~ia~~~~--~~v~V~~  264 (600)
T 3vr4_A          213 DVPMITGQRVIDTFFP---VTKGGAAAVPGPFGAGKTVVQHQIAKWSD--VDLVVYV  264 (600)
T ss_dssp             CSBCCCCCHHHHHHSC---CBTTCEEEEECCTTSCHHHHHHHHHHHSS--CSEEEEE
T ss_pred             CceecccchhhhccCC---ccCCCEEeeecCCCccHHHHHHHHHhccC--CCEEEEE
Confidence            4678899999999985   66999999999999999999999877632  3334444

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.48  E-value=0.0013  Score=52.08  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      +|.-++|+|+||+|||||++.+++.
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6778999999999999999998864

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.47  E-value=0.0037  Score=60.36  Aligned_cols=38  Identities=29%  Similarity=0.415  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      ..++.+|.||||+|||+++..++..+...+.+|++.+.
T Consensus       204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~  241 (646)
T 4b3f_X          204 QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP  241 (646)
T ss_dssp             CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence            66799999999999999988888877777778777764

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=96.46  E-value=0.0017  Score=60.10  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=41.1

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      -+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+.+|+.....
T Consensus       133 ~e~l~TGir~ID~l~p---igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~  178 (469)
T 2c61_A          133 KDFIQTGISTIDGTNT---LVRGQKLPIFSASGLPHNEIALQIARQASV  178 (469)
T ss_dssp             CSBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             ccccceeeEeeeeeec---cccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3678999999999985   669999999999999999999999987764

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.46  E-value=0.0029  Score=58.54  Aligned_cols=30  Identities=40%  Similarity=0.537  Sum_probs=25.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      |..++.-++|.||||+|||+++..++..+.
T Consensus        59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           59 KKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            444666789999999999999999998874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.45  E-value=0.0037  Score=52.78  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe-EEEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-CVFI  153 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~-v~~~  153 (271)
                      .-.+|.+|.|.|++|+||||++..++..+...+-+ +.+.
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~   62 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT   62 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence            34467899999999999999999999988776655 4444

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.45  E-value=0.001  Score=56.66  Aligned_cols=25  Identities=44%  Similarity=0.563  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .-+.|.||||+|||+|+..++....
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhC
Confidence            3388999999999999999998753

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=96.43  E-value=0.0019  Score=60.32  Aligned_cols=54  Identities=30%  Similarity=0.569  Sum_probs=40.8

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHH-HHHHHHhhcCCeEEEEc
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL-HVIAEAQRQGGYCVFID  154 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~-~ia~~~~~~~g~v~~~~  154 (271)
                      -+.+.||+..+|.++.   +-+|+-.+|.|++|+|||+|++ +|+.. ...+..++|..
T Consensus       156 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~~-~~~dv~~V~~~  210 (515)
T 2r9v_A          156 DTPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQ-KGQGVYCIYVA  210 (515)
T ss_dssp             CSEECCSCHHHHHHSC---EETTCBEEEEEETTSSHHHHHHHHHHTT-TTTTEEEEEEE
T ss_pred             CcchhcCccccccccc---cccCCEEEEEcCCCCCccHHHHHHHHHh-hcCCcEEEEEE
Confidence            3578999999999985   6699999999999999999966 45444 32222345544

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.43  E-value=0.0032  Score=51.68  Aligned_cols=37  Identities=24%  Similarity=0.158  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      -.++|+|++|+|||||+..++...... .++..++.+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~   67 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV   67 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence            489999999999999999999886544 4566666543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.43  E-value=0.0019  Score=53.04  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      .++|.|+||+||||++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.42  E-value=0.0022  Score=50.29  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+.|.|+|||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998755

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.41  E-value=0.0013  Score=58.03  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      |.+| +++|+|+||+|||||+..|...
T Consensus        22 ~~~g-~~~i~G~NGsGKS~ll~ai~~l   47 (322)
T 1e69_A           22 FSDR-VTAIVGPNGSGKSNIIDAIKWV   47 (322)
T ss_dssp             CCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred             cCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence            5578 9999999999999999998854

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.41  E-value=0.0021  Score=54.57  Aligned_cols=39  Identities=21%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      +.-+.|.|+||+|||+++..++......+.+.++++...
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~   67 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA   67 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence            456889999999999999999887665556777776543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.40  E-value=0.0026  Score=56.98  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=24.7

Q ss_pred             CCCCcE--EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          116 LPKGRV--VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       116 l~~G~l--i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +++|+.  ++|+|+||+||||++..++..+.
T Consensus        19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            346666  99999999999999999988654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.40  E-value=0.0033  Score=54.23  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      ++.-+.|.||||+|||+++..++...   +.++++++.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~   83 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA   83 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence            34567899999999999999999876   334566653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.38  E-value=0.0027  Score=53.07  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++..++|.|+||+||||++..++...
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            55789999999999999999998765

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.35  E-value=0.0025  Score=51.76  Aligned_cols=23  Identities=48%  Similarity=0.664  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +++|.|++||||||++..++...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999998865

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=96.33  E-value=0.0019  Score=59.60  Aligned_cols=46  Identities=17%  Similarity=0.282  Sum_probs=40.6

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      -+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+.+|+.....
T Consensus       128 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a  173 (464)
T 3gqb_B          128 EQFIQTGISTIDVMNT---LVRGQKLPIFSGSGLPANEIAAQIARQATV  173 (464)
T ss_dssp             CCBCBCSCHHHHTTSC---CBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred             cccccCcceeeecccc---cccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence            4678999999999985   669999999999999999999998877653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.33  E-value=0.0043  Score=57.36  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .++|+|+||+|||||++.+++
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEE
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            799999999999999999865

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.33  E-value=0.0049  Score=51.18  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEE
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFI  153 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~  153 (271)
                      +|.+|.|.|++|+||||.+..++..+...+- .|++.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~   38 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT   38 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence            5789999999999999999999988876654 55443

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=96.33  E-value=0.028  Score=53.39  Aligned_cols=40  Identities=18%  Similarity=0.156  Sum_probs=29.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEcCCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~----~g~v~~~~~e~  157 (271)
                      .+--++|+|.+|+|||++++.++..+...    .-.+++++...
T Consensus       213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg  256 (574)
T 2iut_A          213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM  256 (574)
T ss_dssp             GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred             hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence            34568999999999999999988876642    23556666543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.31  E-value=0.0026  Score=52.89  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +++|.|+|||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998765

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.30  E-value=0.023  Score=55.73  Aligned_cols=28  Identities=18%  Similarity=0.163  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      .+.-++|+|+||+|||+++..++..+..
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l~~  233 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ  233 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence            5677899999999999999999987753

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=96.29  E-value=0.004  Score=52.86  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=32.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      ++.|.|..|+||||++.+++..++..+.+|++++..
T Consensus         3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D   38 (269)
T 1cp2_A            3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence            567789999999999999999999888899998865

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=96.28  E-value=0.0035  Score=59.12  Aligned_cols=54  Identities=24%  Similarity=0.314  Sum_probs=43.2

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      -+.+.||+..+|.++.   +-+|+-.+|.|++|+|||+|+.+|+...  ..+-++|...
T Consensus       208 ~epl~TGirvID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~i  261 (588)
T 3mfy_A          208 EVPLITGQRVIDTFFP---QAKGGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIGC  261 (588)
T ss_dssp             CSEECCSCHHHHHHSC---EETTCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEEC
T ss_pred             CcccccCcchhhccCC---cccCCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEEe
Confidence            4678899999999985   6699999999999999999999887652  2334555543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.26  E-value=0.039  Score=51.02  Aligned_cols=36  Identities=17%  Similarity=0.055  Sum_probs=27.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      ...+++++|.||+||||++..++.......-....+
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~   73 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF   73 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEE
Confidence            345899999999999999999998776444333333

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.23  E-value=0.0027  Score=51.67  Aligned_cols=24  Identities=42%  Similarity=0.616  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..++|+||+|+|||||+..+....
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999887653

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.22  E-value=0.005  Score=54.21  Aligned_cols=42  Identities=21%  Similarity=0.330  Sum_probs=36.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      .+..-.+|+|+|.-|+||||++-+++..++..+.+|+.++..
T Consensus        44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~D   85 (314)
T 3fwy_A           44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD   85 (314)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             CCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            456778999999999999999999999999999999999865

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.20  E-value=0.0016  Score=56.98  Aligned_cols=27  Identities=19%  Similarity=0.192  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH-HhhcCC
Q 024152          122 VEIYGPEASGKTTLALHVIAE-AQRQGG  148 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~-~~~~~g  148 (271)
                      ++|+|+||+|||||++.+++. ..+..+
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g   48 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLTDLYPERV   48 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC--------
T ss_pred             EEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence            499999999999999998875 665555

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.19  E-value=0.0057  Score=52.58  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=28.6

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      |...+. |..++-..++|.||||+|||.|+..++...
T Consensus        93 l~~~l~-~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           93 FLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHh-CCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            555566 334667789999999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.19  E-value=0.0032  Score=51.74  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .++|.|+|||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998755

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=96.18  E-value=0.0044  Score=58.38  Aligned_cols=53  Identities=23%  Similarity=0.286  Sum_probs=42.8

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      .-+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+.+|+.+..  .+-++|.
T Consensus       201 ~~epl~TGirvID~l~P---igrGqr~~Ifg~~g~GKT~l~~~ia~~~~--~~v~V~~  253 (578)
T 3gqb_A          201 PNTPFLTGMRILDVLFP---VAMGGTAAIPGPFGSGKSVTQQSLAKWSN--ADVVVYV  253 (578)
T ss_dssp             SCSEECCSCHHHHTTSC---EETTCEEEECCCTTSCHHHHHHHHHHHSS--CSEEEEE
T ss_pred             CCCcccccchhhhhccc---ccCCCEEeeeCCCCccHHHHHHHHHhccC--CCEEEEE
Confidence            34678899999999975   66999999999999999999999877632  3334444

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=96.18  E-value=0.014  Score=51.99  Aligned_cols=61  Identities=18%  Similarity=0.160  Sum_probs=45.8

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCc
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK  170 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~  170 (271)
                      .+..+..  +-+.-.++.+.|..|+||||++.++|..++..+.+|++++....  ..+...++..
T Consensus        15 ~~~~~~~--~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~--~~l~~~l~~~   75 (349)
T 3ug7_A           15 ITEKKLE--KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA--HSLRDIFEQE   75 (349)
T ss_dssp             HHHHHHH--SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT--CHHHHHHCSC
T ss_pred             hHHHhhc--ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC--CCHHHHhCCC
Confidence            3344444  44566688888999999999999999999998889999998752  3445555554

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.17  E-value=0.0043  Score=51.92  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEE
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVF  152 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~  152 (271)
                      .+|.+|.|.|.+|+||||++..++..+.. .+-+|++
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~   55 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV   55 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence            37899999999999999999999998876 5556555

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.17  E-value=0.0033  Score=58.18  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAE  156 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~e  156 (271)
                      .++|.|+||+|||+++..++..+...+. .|+++...
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T   83 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT   83 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence            9999999999999999999988877665 56666543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.16  E-value=0.0034  Score=51.28  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -.-+++|.|.+||||||++..++...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc
Confidence            45689999999999999999988753

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=96.15  E-value=0.0036  Score=52.16  Aligned_cols=36  Identities=22%  Similarity=0.240  Sum_probs=32.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      |.|.|..|+||||++.+++..++..+.+|++++...
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   38 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP   38 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            566999999999999999999998888999998654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.14  E-value=0.0029  Score=49.51  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      .++|+|+||+|||||++.+++.
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999864

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=96.11  E-value=0.0019  Score=60.24  Aligned_cols=55  Identities=29%  Similarity=0.454  Sum_probs=41.3

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      -+.+.||+..+|.++.   +-+|+-.+|.|++|+|||+|++....+.+..+..++|..
T Consensus       144 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~  198 (507)
T 1fx0_A          144 YEPLQTGLIAIDAMIP---VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVA  198 (507)
T ss_dssp             CSBCCCSCTTTTTTSC---CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred             CCcccccceecccccc---cccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEE
Confidence            3678999999999986   669999999999999999997644333333333445554

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=96.11  E-value=0.0058  Score=52.62  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=32.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      ++.|.|..|+||||++.++|..++..+.+|++++..
T Consensus         4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D   39 (289)
T 2afh_E            4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            677789999999999999999999888799999865

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=96.10  E-value=0.0086  Score=51.46  Aligned_cols=40  Identities=18%  Similarity=0.273  Sum_probs=34.3

Q ss_pred             CCcEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          118 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~G~-~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      +..++.|.+. +|.||||++.++|..++..+.+|++++...
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~  121 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM  121 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4568888765 899999999999999998888999998764

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=96.10  E-value=0.0082  Score=52.34  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=34.7

Q ss_pred             CCcEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          118 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~G~-~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      ++.++.|.+. +|+||||++.++|..++..+.+|++++...
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~  143 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL  143 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4578888875 899999999999999998888999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.09  E-value=0.0031  Score=54.56  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .+++|.|+||+||||++..++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999886

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.09  E-value=0.0047  Score=55.09  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++.-++|.||||+|||+++..++...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            55678999999999999999998876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.09  E-value=0.003  Score=52.01  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .|..++|.|++|+|||||+..++...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            46789999999999999999887643

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.01  E-value=0.0033  Score=57.54  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ...+++|+|+|||||||++..++..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            5689999999999999999987753

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.01  E-value=0.0046  Score=50.77  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .+++|+|+||+||||++..|...+.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4999999999999999998865443

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.99  E-value=0.0055  Score=50.33  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..++++.|+||+|||+++..++...
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~~   29 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAND   29 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3489999999999999998765544

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=95.98  E-value=0.011  Score=53.21  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=34.8

Q ss_pred             CCCcEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          117 PKGRVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       117 ~~G~li~I~G-~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      .++.++.|++ ..|+||||++.++|..++..+.+|++++.+
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            3667888875 999999999999999999888899999966

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.98  E-value=0.0037  Score=55.64  Aligned_cols=25  Identities=40%  Similarity=0.583  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .+++|+||+|+|||||+..++....
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4899999999999999999987653

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.97  E-value=0.0058  Score=54.75  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=27.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .+..-+.|.||||+|||+++..++...   +.+++.++
T Consensus        70 ~~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~  104 (376)
T 1um8_A           70 LSKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISD  104 (376)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred             cCCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEec
Confidence            355678999999999999999998766   33455554

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.96  E-value=0.0041  Score=53.73  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .-+|+|.|++||||||++..++.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999983

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.95  E-value=0.0073  Score=49.62  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=26.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      -.++|+|.+|+|||||+..++...... ..+..++
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~   72 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIA   72 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence            478899999999999999999886554 3344444

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.92  E-value=0.0028  Score=55.40  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++..++|+|+||+|||||++.+++.
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3448999999999999999999875

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.91  E-value=0.0037  Score=49.62  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      .++|+|++|+|||||++.+++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=95.89  E-value=0.0093  Score=52.53  Aligned_cols=38  Identities=26%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      .++...|..|+||||++.++|..++..+.+|++++...
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   52 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP   52 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            68889999999999999999999998888999998765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.88  E-value=0.0036  Score=49.93  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|+||+|||||++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.88  E-value=0.0049  Score=54.83  Aligned_cols=27  Identities=22%  Similarity=0.473  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .++.+++|+||+|+|||||+..+|..+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence            356799999999999999999988643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.82  E-value=0.0055  Score=54.19  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+++|+||+|+|||||+..++...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            489999999999999999998754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.80  E-value=0.0024  Score=58.50  Aligned_cols=28  Identities=21%  Similarity=0.154  Sum_probs=25.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++.|..++|+|+||+|||||++.+++.
T Consensus       153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          153 ELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            4668999999999999999999999876

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=95.80  E-value=0.0088  Score=51.61  Aligned_cols=40  Identities=18%  Similarity=0.210  Sum_probs=34.0

Q ss_pred             CCcEEEEEc---CCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          118 KGRVVEIYG---PEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~G---~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      .+.++.|++   ..|+||||++.++|..++..+.+|++++...
T Consensus        33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~   75 (298)
T 2oze_A           33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDL   75 (298)
T ss_dssp             HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            456777776   9999999999999999998888999998654

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=95.79  E-value=0.009  Score=50.51  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=34.2

Q ss_pred             CCcEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          118 KGRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~-G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      ++.++.|+ +..|+||||++.++|..++..+.+|++++...
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   45 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP   45 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence            45677776 68899999999999999998888999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.78  E-value=0.0056  Score=47.30  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..+...
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.74  E-value=0.0059  Score=46.95  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|++|+|||||+..+....
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999988653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.73  E-value=0.0059  Score=46.84  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++++|++|+|||||++.++..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999865

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.71  E-value=0.0068  Score=50.78  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +|.+|.|.|.+|+||||++..++..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            36789999999999999999998765

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=95.70  E-value=0.015  Score=50.40  Aligned_cols=41  Identities=17%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             CCcEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC
Q 024152          118 KGRVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAEHA  158 (271)
Q Consensus       118 ~G~li~I~G-~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~  158 (271)
                      ++.++.|.+ .+|.||||++.++|..++..+.+|++++....
T Consensus        91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~  132 (286)
T 3la6_A           91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR  132 (286)
T ss_dssp             TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence            445666665 68999999999999999988889999987643

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.69  E-value=0.0085  Score=49.85  Aligned_cols=29  Identities=28%  Similarity=0.377  Sum_probs=26.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      .+|.+|.|.|++|+||||.+..++..+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            37899999999999999999999987764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.69  E-value=0.012  Score=56.66  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      ++|.+|.|.|.|||||||++..++..+...+-.+++++
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD   87 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   87 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            37889999999999999999999987765554555554

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.67  E-value=0.0066  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..+++.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999998864

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.67  E-value=0.012  Score=48.47  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      |.+|.|-|..||||||.+..++..+.. +.+|++.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~   35 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   35 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEe
Confidence            568999999999999999999988753 4455554

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=95.66  E-value=0.015  Score=49.14  Aligned_cols=37  Identities=22%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      +.+..+..|+||||++.+++..++..+.+|++++...
T Consensus         5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (263)
T 1hyq_A            5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   41 (263)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            3344678999999999999999998888999998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.65  E-value=0.0068  Score=46.63  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..+...
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998864

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=95.64  E-value=0.011  Score=53.95  Aligned_cols=38  Identities=21%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      ..-+.|+|++|+|||+++..++.++...++.++++|..
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk   90 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN   90 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            45789999999999999988888888777888888754

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=95.63  E-value=0.015  Score=55.50  Aligned_cols=40  Identities=15%  Similarity=0.212  Sum_probs=36.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      +..++.+.|.+|+||||++.+++..++..+.+|++++...
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~   46 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5679999999999999999999999998888999999775

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.63  E-value=0.0074  Score=53.48  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+++|+||||+||||++..|+..+
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~~~l   47 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            499999999999999999876543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.61  E-value=0.0073  Score=53.19  Aligned_cols=25  Identities=32%  Similarity=0.507  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +.+++|+||+|+|||||+..++...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4589999999999999999988654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=95.60  E-value=0.037  Score=56.25  Aligned_cols=55  Identities=27%  Similarity=0.217  Sum_probs=37.1

Q ss_pred             cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH--Hh-hcCCeEEEEcCCCCCC
Q 024152          104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE--AQ-RQGGYCVFIDAEHALD  160 (271)
Q Consensus       104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~--~~-~~~g~v~~~~~e~~~~  160 (271)
                      +..|...+.  ......++.|.|+.|+|||||+..++..  +. .....++|++......
T Consensus       137 LeeL~elL~--~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d  194 (1221)
T 1vt4_I          137 YLKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS  194 (1221)
T ss_dssp             HHHHHHHHH--HCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS
T ss_pred             HHHHHHHHh--ccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC
Confidence            344555554  3344689999999999999999998853  22 2344578887654433

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=95.58  E-value=0.014  Score=48.30  Aligned_cols=38  Identities=24%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             cEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          120 RVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       120 ~li~I-~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      .++.| .+..|+||||++.+++..++..+.+|++++...
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence            34555 567899999999999999998888999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.58  E-value=0.0075  Score=46.58  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|++|+|||||+..+....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999988654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.0072  Score=48.17  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      +.--++|+|++|+|||||+..+++.
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3447999999999999999998864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.57  E-value=0.0045  Score=56.74  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++|+|+||+|||||++.+++...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            59999999999999999998654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.57  E-value=0.0073  Score=46.73  Aligned_cols=21  Identities=19%  Similarity=0.476  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|++|+|||||+..+.+.
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            789999999999999998854

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.55  E-value=0.0076  Score=46.60  Aligned_cols=23  Identities=17%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|++|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.55  E-value=0.0076  Score=47.09  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..+...
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.54  E-value=0.013  Score=51.29  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      .++.|.|++|+|||+|+..++....   ..++|++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEch
Confidence            5999999999999999999987753   236777654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.54  E-value=0.0079  Score=46.39  Aligned_cols=22  Identities=18%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||++.+...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999874

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.54  E-value=0.0078  Score=46.64  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..++..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999998865

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=95.54  E-value=0.012  Score=49.97  Aligned_cols=39  Identities=21%  Similarity=0.284  Sum_probs=32.8

Q ss_pred             CCcEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          118 KGRVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I-~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      ++.++.| .+..|+||||++.+++..++ .+.+|++++...
T Consensus        26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~   65 (267)
T 3k9g_A           26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT   65 (267)
T ss_dssp             CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred             CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence            4566666 67889999999999999999 778999998664

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.53  E-value=0.0092  Score=52.43  Aligned_cols=26  Identities=35%  Similarity=0.478  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ...+++|+||+|+|||||+..++...
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC
Confidence            35689999999999999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.51  E-value=0.0066  Score=47.00  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||++.++..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998863

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.50  E-value=0.0076  Score=46.95  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||++.+.+.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            4789999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.49  E-value=0.009  Score=46.05  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|++|+|||||+..+....
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.48  E-value=0.006  Score=52.15  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|+||+|||||++.+++..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.48  E-value=0.014  Score=55.60  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEc
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFID  154 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~  154 (271)
                      +.|.++.|.|.|||||||++..++..+...+ ..+++++
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD  432 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL  432 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence            4578999999999999999999998877555 4556665

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.48  E-value=0.091  Score=51.79  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=27.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEc
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFID  154 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~  154 (271)
                      ..|+.++|.||+|+||||++-.++......   +..++++.
T Consensus       107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~  147 (773)
T 2xau_A          107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ  147 (773)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred             hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence            378999999999999999777776554432   33466654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.47  E-value=0.0084  Score=46.92  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..+...
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998874

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.46  E-value=0.014  Score=55.21  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .+.++.|.|.+|+||||++..++..+...+..+.+++.
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~  408 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG  408 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence            37899999999999999999999877766666777764

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.46  E-value=0.018  Score=47.91  Aligned_cols=40  Identities=13%  Similarity=0.127  Sum_probs=33.2

Q ss_pred             CCcEEEEE-cCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCC
Q 024152          118 KGRVVEIY-GPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~-G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~  157 (271)
                      .+.++.|+ +..|+||||++.+++..++.. +.+|++++...
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~   44 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL   44 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence            45566666 568999999999999999988 88999998753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.45  E-value=0.0088  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..++..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998864

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=95.44  E-value=0.017  Score=49.01  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=33.3

Q ss_pred             CcEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC
Q 024152          119 GRVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL  159 (271)
Q Consensus       119 G~li~I-~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~  159 (271)
                      +.++.| .+..|+||||++.+++..++..+.+|++++.....
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~   59 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG   59 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            445555 57789999999999999999888899999876443

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.44  E-value=0.009  Score=48.98  Aligned_cols=25  Identities=36%  Similarity=0.538  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +.++.|.|++|+||||++..++...
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4589999999999999999887654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.43  E-value=0.0085  Score=46.44  Aligned_cols=20  Identities=35%  Similarity=0.343  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~  141 (271)
                      ++|+|++|+|||||+..+++
T Consensus         5 i~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999864

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=95.42  E-value=0.03  Score=49.94  Aligned_cols=48  Identities=17%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCC
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAE  156 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e  156 (271)
                      .|+.++.  . +.-.++.+.|..|+||||++.++|..++  ..+.+|++++..
T Consensus         8 ~L~~~l~--~-~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D   57 (348)
T 3io3_A            8 TLESIVQ--H-DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD   57 (348)
T ss_dssp             SSHHHHT--C-TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred             hHHHHhc--C-CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            3455554  1 2347999999999999999999999999  777799999987

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=95.41  E-value=0.017  Score=48.43  Aligned_cols=38  Identities=26%  Similarity=0.361  Sum_probs=31.9

Q ss_pred             cEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          120 RVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       120 ~li~I-~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      .++.| .+..|+||||++.+++..++..+.+|++++...
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI   41 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            34555 567889999999999999998888999998764

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.41  E-value=0.017  Score=47.45  Aligned_cols=36  Identities=31%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA  158 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~  158 (271)
                      ....+..|+||||++.+++..++..+ +|++++....
T Consensus         4 ~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q   39 (209)
T 3cwq_A            4 TVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN   39 (209)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence            34468899999999999999999888 9999986543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.41  E-value=0.009  Score=47.46  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..++..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999999875

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=95.39  E-value=0.017  Score=51.26  Aligned_cols=38  Identities=16%  Similarity=0.193  Sum_probs=34.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      -.++.+.|..|+||||++.++|..++..+.+|++++..
T Consensus        16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D   53 (334)
T 3iqw_A           16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD   53 (334)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            46889999999999999999999999888899999876

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.39  E-value=0.009  Score=46.71  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||++.+...
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=95.39  E-value=0.035  Score=50.73  Aligned_cols=38  Identities=18%  Similarity=0.173  Sum_probs=27.8

Q ss_pred             CCcEEEEEcCCCCcHHHHH-HHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLA-LHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~-~~ia~~~~~~~g~v~~~~~  155 (271)
                      +|+.+++.||.|+|||..+ ..++..+...+..++|+..
T Consensus         1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P   39 (431)
T 2v6i_A            1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP   39 (431)
T ss_dssp             -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence            4788999999999999976 4444455555667787764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.36  E-value=0.0075  Score=50.36  Aligned_cols=23  Identities=13%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|++|+|||||++.+++..
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            58999999999999999998743

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.36  E-value=0.0047  Score=52.53  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .++.+|.|.|.+|+||||++..++..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            378899999999999999998887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.36  E-value=0.0098  Score=46.09  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      +.--++|+|++|+|||||+..+...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3446899999999999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.36  E-value=0.0096  Score=47.07  Aligned_cols=22  Identities=18%  Similarity=0.202  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..+...
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999998864

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.35  E-value=0.0064  Score=53.31  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .|.-+.|.||||+|||+|+..++...
T Consensus        45 ~~~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           45 TGGHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             HTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             cCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            35679999999999999999998754

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A

Probab=95.34  E-value=0.033  Score=51.22  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCCcHHH-HHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTT-LALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTt-l~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .++++++.||.|+|||+ ++..++..+...+..++++..
T Consensus        18 ~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~P   56 (451)
T 2jlq_A           18 KKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAP   56 (451)
T ss_dssp             TTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECC
Confidence            57899999999999999 577766666556667788763

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.34  E-value=0.021  Score=46.56  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +|.|-|..||||||.+..++..+...+-+|++..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr   35 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR   35 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            6889999999999999999998887777766654

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=95.33  E-value=0.021  Score=51.07  Aligned_cols=49  Identities=14%  Similarity=0.193  Sum_probs=38.8

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCC
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEH  157 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~  157 (271)
                      .|+.++.  . +.-.++...|..|+||||++.++|..++  ..+.+|++++...
T Consensus         8 ~l~~l~~--~-~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~   58 (354)
T 2woj_A            8 NLHSLIT--S-TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP   58 (354)
T ss_dssp             SCHHHHT--C-SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred             cHHHHhc--C-CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence            3555654  1 2345788889999999999999999999  7778999998765

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.33  E-value=0.011  Score=47.63  Aligned_cols=24  Identities=33%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .|.-++|.|++|+||||+++.+..
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            466799999999999999998876

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.32  E-value=0.01  Score=46.86  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|++|+|||||+..+....
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            37899999999999999998643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.31  E-value=0.01  Score=46.35  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..++..
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.31  E-value=0.01  Score=46.24  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|++|+|||||+..+....
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.28  E-value=0.0091  Score=46.11  Aligned_cols=20  Identities=30%  Similarity=0.323  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~  141 (271)
                      ++|+|++|+|||||++.+++
T Consensus         5 i~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            78999999999999998864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.27  E-value=0.01  Score=47.14  Aligned_cols=22  Identities=18%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..+++.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.26  E-value=0.01  Score=48.31  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      --++|+|++|+|||||+..++...
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.26  E-value=0.0082  Score=47.85  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      --++|+|++|+|||||++.+++.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.25  E-value=0.01  Score=47.50  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      --++|+|++|+|||||++.++..
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.24  E-value=0.011  Score=47.14  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..++..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998874

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.24  E-value=0.016  Score=49.98  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +.|.||||+|||+++..++..+.
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHhc
Confidence            89999999999999999998763

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.24  E-value=0.0095  Score=46.58  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..+...
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999998854

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.22  E-value=0.011  Score=46.38  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||++.++..
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999998864

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.22  E-value=0.012  Score=51.04  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +.|.||||+||||++..++..+.
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhc
Confidence            89999999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.21  E-value=0.012  Score=46.17  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|++|+|||||+..+....
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            57999999999999999987643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.20  E-value=0.023  Score=52.07  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .++|+|+||+|||||++.+++
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~   25 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAG   25 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEE
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999998864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.19  E-value=0.012  Score=46.19  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|++|+|||||+..+...
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999998865

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.19  E-value=0.012  Score=47.26  Aligned_cols=22  Identities=32%  Similarity=0.332  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|+||+|||||++.+++.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999863

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.19  E-value=0.011  Score=46.56  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|++|+|||||+..+....
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999988653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.18  E-value=0.012  Score=47.00  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|++|+|||||++.++...
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999887653

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.17  E-value=0.013  Score=53.33  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .+++|+||+|+|||||+..++....
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            4899999999999999999987663

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.16  E-value=0.013  Score=49.19  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -.+|.|+|||||||++..++...
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d1xp8a1	268	c.37.1.11 (A:15-282) RecA protein, ATPase-domain {	2e-84
d1mo6a1	269	c.37.1.11 (A:1-269) RecA protein, ATPase-domain {M	2e-81
d1u94a1	263	c.37.1.11 (A:6-268) RecA protein, ATPase-domain {E	1e-76
d1v5wa_	258	c.37.1.11 (A:) Meiotic recombination protein DMC1/	3e-25
d1szpa2	251	c.37.1.11 (A:145-395) DNA repair protein Rad51, ca	1e-23
d1pzna2	254	c.37.1.11 (A:96-349) DNA repair protein Rad51, cat	2e-22
d2i1qa2	258	c.37.1.11 (A:65-322) DNA repair protein Rad51, cat	1e-20
d1n0wa_	242	c.37.1.11 (A:) DNA repair protein Rad51, catalytic	2e-19
d1tf7a1	242	c.37.1.11 (A:14-255) Circadian clock protein KaiC	5e-16
d1tf7a2	242	c.37.1.11 (A:256-497) Circadian clock protein KaiC	3e-15
d1nlfa_	274	c.37.1.11 (A:) Hexameric replicative helicase repA	4e-06
d1cr2a_	277	c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),	2e-04
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	0.002
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.004

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Length = 268

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  251 bits (643), Expect = 2e-84
 Identities = 115/193 (59%), Positives = 150/193 (77%), Gaps = 1/193 (0%)

Query: 65  KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
           +  A++ A+ QI  +FGKGSIM LG + +   V VVSTGS +LD+ALG GG+P+GR+ EI
Sbjct: 4   RSKAIETAMSQIEKAFGKGSIMKLG-AESKLDVQVVSTGSLSLDLALGVGGIPRGRITEI 62

Query: 125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
           YGPE+ GKTTLAL ++A+AQ+ GG C FIDAEHALDP  A  +GV T+ LL++QPD GEQ
Sbjct: 63  YGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ 122

Query: 185 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
           AL +++ L+RSG++DVVVVDSVAAL P+ E++G+MGD+   +QARLMSQALRKL+  LS 
Sbjct: 123 ALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSK 182

Query: 245 SQTILIFINQVFS 257
           + T  IFINQV  
Sbjct: 183 TGTAAIFINQVRE 195

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  244 bits (623), Expect = 2e-81
 Identities = 118/199 (59%), Positives = 156/199 (78%), Gaps = 4/199 (2%)

Query: 62  MSK---KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPK 118
           M++   ++ AL+ A+ QI  S+GKGS+M LG     + + V+ TGS ALD+ALG GGLP+
Sbjct: 1   MTQTPDREKALELAVAQIEKSYGKGSVMRLG-DEARQPISVIPTGSIALDVALGIGGLPR 59

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178
           GRV+EIYGPE+SGKTT+ALH +A AQ  GG   FIDAEHALDP  A+ +GV T++LL++Q
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQ 119

Query: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238
           PD GEQAL + D LIRSG++D+VV+DSVAALVP+ EL+GEMGD+H+ +QARLMSQALRK+
Sbjct: 120 PDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKM 179

Query: 239 SHSLSLSQTILIFINQVFS 257
           + +L+ S T  IFINQ+  
Sbjct: 180 TGALNNSGTTAIFINQLRD 198

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Length = 263

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

 Score =  231 bits (591), Expect = 1e-76
 Identities = 122/193 (63%), Positives = 144/193 (74%), Gaps = 1/193 (0%)

Query: 65  KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEI 124
           K  AL  AL QI   FGKGSIM LG       V  +STGS +LDIALG GGLP GR+VEI
Sbjct: 1   KQKALAAALGQIEKQFGKGSIMRLG-EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 59

Query: 125 YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ 184
           YGPE+SGKTTL L VIA AQR+G  C FIDAEHALDP  A  +GV  +NLL +QPD GEQ
Sbjct: 60  YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 119

Query: 185 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244
           AL + D L RSG+VDV+VVDSVAAL PK E++GE+GD+HM + AR+MSQA+RKL+ +L  
Sbjct: 120 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 179

Query: 245 SQTILIFINQVFS 257
           S T+LIFINQ+  
Sbjct: 180 SNTLLIFINQIRM 192

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.6 bits (244), Expect = 3e-25
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 24/180 (13%)

Query: 95  RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG------ 148
           + V  ++TGS   D  LG GG+    + E +G   +GKT L+  +   AQ  G       
Sbjct: 14  KMVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGG 72

Query: 149 YCVFIDAEHALDPSLAETIGVK--------TENLLLAQPDCGEQALSLVDTLI-----RS 195
             +FID E+   P     I  +         +N+L A+    E  + L+D +       +
Sbjct: 73  KIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEA 132

Query: 196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
           G   ++++DS+ AL          G   +A + + ++Q L +L          +   NQ+
Sbjct: 133 GIFKLLIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 188

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.4 bits (233), Expect = 1e-23
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 22/178 (12%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA------QRQGGYC 150
           +  ++TGS  LD  LG GG+  G + E++G   +GK+ L   +              G C
Sbjct: 13  LICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKC 71

Query: 151 VFIDAEHALDPSL----AETIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVD 199
           ++ID E    P      A+  G+       N+  A+    +  L L+D    ++      
Sbjct: 72  LYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFS 131

Query: 200 VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257
           ++VVDSV AL          G   ++ +   +++ +R L          ++  NQV +
Sbjct: 132 LIVVDSVMALYR----TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVA 185

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 90.9 bits (224), Expect = 2e-22
 Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 27/181 (14%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIA------EAQRQGGYC 150
           +  +STGS +LD  LG GG+    + E++G   SGKT LA  +        E     G  
Sbjct: 15  IGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV 73

Query: 151 VFIDAEHALDPSLAETIGVKT--------ENLLLAQPDCGEQALSLV--------DTLIR 194
           ++ID E+   P     I            +++ +A+       + LV        + L  
Sbjct: 74  IWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNT 133

Query: 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254
              V +++VDS+ +          +G   +A + + +++ L  L    +L    +   NQ
Sbjct: 134 DRPVKLLIVDSLTSHFR----SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 189

Query: 255 V 255
           V
Sbjct: 190 V 190

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 86.3 bits (212), Expect = 1e-20
 Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 25/183 (13%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------- 145
           V  +ST S  LD  LG GGL    V E  G   SGKT +        Q            
Sbjct: 13  VWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAV 71

Query: 146 -----QGGYCVFIDAEHALDPSLAETIGVK--------TENLLLAQPDCGEQALSLVDTL 192
                     V+ID E    P     +            +N  +A+    +  +   + +
Sbjct: 72  SKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKI 131

Query: 193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI 252
                    +   V   +     +   G   +A + + + + +  L+    L   +++  
Sbjct: 132 EDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVT 191

Query: 253 NQV 255
           NQV
Sbjct: 192 NQV 194

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (202), Expect = 2e-19
 Identities = 31/179 (17%), Positives = 57/179 (31%), Gaps = 22/179 (12%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156
           +  ++TGS  LD  L  GG+  G + E++G   +GKT +   +    Q            
Sbjct: 2   IIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 60

Query: 157 HALDPSLA-----------------ETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 199
             +D                       +            D   Q L     ++      
Sbjct: 61  MYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA 120

Query: 200 VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258
           +++VDS  AL          G   ++ +   +++ LR L          ++  NQV + 
Sbjct: 121 LLIVDSATALYR----TDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 175

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 73.1 bits (178), Expect = 5e-16
 Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 5/178 (2%)

Query: 97  VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-CVFIDA 155
           +  + T     D     GGLP GR   + G   +GKT  ++  +     +     VF+  
Sbjct: 5   IAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 63

Query: 156 EHALDPSL--AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV-VVVDSVAALVPK 212
           E      +  A + G     L+         A    +     G  D+  +++ +   + K
Sbjct: 64  EETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQK 123

Query: 213 GELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLNKIIDESSGH 270
                   D+  ++  +  + ++ +      +++   I    V +    +     + +
Sbjct: 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARY 181

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 71.1 bits (173), Expect = 3e-15
 Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 6/158 (3%)

Query: 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159
           VS+G   LD   G GG  K  ++   G   +GKT L    +  A       +    E + 
Sbjct: 8   VSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR 66

Query: 160 DPSL--AETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDG 217
              L  A + G+  E +          A      L        ++   +    P      
Sbjct: 67  AQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQ---IIKSEINDFKPARIAID 123

Query: 218 EMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255
            +      +      Q +  ++      +   +F N  
Sbjct: 124 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTS 161

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 25/146 (17%)

Query: 113 TGGLPKGRVVEIYGPEASGKTTLALHVIA----------EAQRQGGYCVFIDAEH----- 157
              +  G V  +  P  +GK+ LAL + A            +   G  +++ AE      
Sbjct: 23  LPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAI 82

Query: 158 -----ALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR-----SGSVDVVVVDSVA 207
                AL   L+        + LL QP  G     +           +    ++V+D++ 
Sbjct: 83  HHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLR 142

Query: 208 ALVPKGELDGEMGDAHMAMQARLMSQ 233
               + E         +     + + 
Sbjct: 143 RFHIEEENASGPMAQVIGRMEAIAAD 168

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 93  TPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152
           +   V ++ +G   ++    T G   G V+ +      GK+T       +     G  V 
Sbjct: 11  SEESVGLLFSGCTGINDK--TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68

Query: 153 I 153
           +
Sbjct: 69  L 69

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 8/49 (16%), Positives = 16/49 (32%)

Query: 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI 167
             +  + G   +GK+++    I E      Y      E     S  + +
Sbjct: 29  APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFL 77

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156
            G ++ + G   SGK+T+A  +   A   G   V   ++
Sbjct: 3   GGNILLLSGHPGSGKSTIAEAL---ANLPGVPKVHFHSD 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	99.97
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	99.97
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	99.97
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	99.87
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	99.82
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	99.79
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	99.76
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	99.74
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	99.74
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	99.7
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	99.67
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.64
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.63
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.62
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.59
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.59
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.58
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.57
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.54
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	99.5
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.46
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.42
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.41
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.4
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.37
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.36
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.34
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.32
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.28
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.18
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.17
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.94
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.67
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.39
d1okkd2	207	GTPase domain of the signal recognition particle r	98.34
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.27
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.27
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.15
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.14
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.12
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.02
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.0
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.99
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.88
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.86
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.81
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.78
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.77
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.72
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.69
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.68
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.66
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.63
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.62
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.6
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.58
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.58
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	97.58
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.56
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.56
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.55
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.52
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	97.46
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.44
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.43
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.42
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.41
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	97.4
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.39
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.37
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.36
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.35
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.34
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.33
d1xpua3	289	Transcription termination factor Rho, ATPase domai	97.32
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.31
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	97.31
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.3
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.28
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.27
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.24
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.21
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.19
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.19
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.18
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.17
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.13
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.12
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.11
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.1
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.1
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.09
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.08
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.08
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.08
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.07
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	97.03
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.03
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.03
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.03
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.02
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.01
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.97
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.93
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.93
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.91
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.91
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.91
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.9
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.88
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.86
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.82
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.81
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.8
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.78
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.74
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.74
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	96.73
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.72
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.72
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.68
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.68
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.68
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.63
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.62
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	96.61
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.6
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.57
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.55
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.54
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.49
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.49
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.47
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.39
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	96.39
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.39
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.34
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.3
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.3
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.3
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.3
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.11
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.08
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.08
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.07
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.04
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.02
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.01
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.01
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.99
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.99
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.93
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.89
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.88
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.84
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	95.82
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.79
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.78
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.75
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.75
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.72
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.7
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.69
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.68
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.62
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.62
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.6
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.56
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.55
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.54
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.48
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.48
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.39
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.36
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.35
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.34
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.32
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.31
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.31
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.31
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.31
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.28
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.27
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.24
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.23
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.23
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.21
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.2
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.19
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.17
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.17
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.16
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.1
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.08
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.08
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.08
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.07
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.06
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.05
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.04
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.01
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.97
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.96
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.94
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	94.94
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.93
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.93
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.92
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.91
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.9
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.87
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.86
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.85
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.81
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.79
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.77
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.76
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.75
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.7
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.69
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	94.67
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.64
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.64
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.6
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	94.57
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.57
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.54
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	94.4
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.35
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.26
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.18
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.02
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.02
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.0
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.96
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.94
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.85
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.58
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.48
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.14
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.14
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.09
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.97
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.84
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	92.78
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.77
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	92.48
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.17
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.94
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	91.51
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	91.19
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.96
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.44
d1ofux_	119	Hypothetical protein PA3008 {Pseudomonas aeruginos	90.38
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.3
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	89.78
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.92
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.69
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.46
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	88.42
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.4
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.39
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	87.35
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	86.72
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	86.0
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	85.66
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	85.24
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	85.05
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	84.68
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	84.47
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	83.96
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	83.3
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	82.21
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	82.05
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	81.87

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=4.3e-30  Score=221.95  Aligned_cols=194  Identities=59%  Similarity=0.928  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152           65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus        65 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .+..++.++..|++.|++.....++.. ....++.||||+..||.++|+||+|.|.++.|+|+||+|||+||++++.+++
T Consensus         4 ~~~~~~~~~~~i~k~~g~~~~~~~~~~-~~~~~~~i~TGs~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1           4 RSKAIETAMSQIEKAFGKGSIMKLGAE-SKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSSCCTTSC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcceEECCCc-CCCCCCeEcCCCHHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence            456788999999999998776555543 4457889999999999999669999999999999999999999999999999


Q ss_pred             hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhH
Q 024152          145 RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHM  224 (271)
Q Consensus       145 ~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~  224 (271)
                      ..++.|+|+++|..+++.+++.+|++++++.+.++.+.++.+..+..+..+..++++||||+..++++.++.++.++.+.
T Consensus        83 k~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~  162 (268)
T d1xp8a1          83 KAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLP  162 (268)
T ss_dssp             HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------C
T ss_pred             hCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhcCCCcEEEEecccccccHHHHcccccchhH
Confidence            99999999999999999999999999999999999999999999888887788999999999999988888776555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          225 AMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       225 ~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      ..+++.++..++.|..++.+.+++++++||++..+
T Consensus       163 ~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~~  197 (268)
T d1xp8a1         163 GLQARLMSQALRKLTAILSKTGTAAIFINQVREKI  197 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC----
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCeEEEEeEEeecc
Confidence            57888999999999999999999999999999776

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.1e-30  Score=220.24  Aligned_cols=192  Identities=63%  Similarity=0.951  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152           67 LALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ  146 (271)
Q Consensus        67 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~  146 (271)
                      ..+.+++.+|++.|+++..+.++++ ....++.||||+..||.++|.||+++|.++.|+|+||+||||||++++.+++..
T Consensus         3 ~~~~~~~~~i~k~~g~~~~~~~~~~-~~~~~~~isTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~   81 (263)
T d1u94a1           3 KALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE   81 (263)
T ss_dssp             HHHHHHHHHHHHHHCTTSSCCTTCC-CBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhCCcceEECCcc-cCCCCCeEccCCHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence            4577888999999998776666653 334678999999999999954899999999999999999999999999999999


Q ss_pred             CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHH
Q 024152          147 GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAM  226 (271)
Q Consensus       147 ~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~  226 (271)
                      ++.++|+++|..+.+.+++.+|++++++.+.++.+.++.+..+..+.....++++||||+..++++.++.++.++.+...
T Consensus        82 g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~~~~~~liViDSi~al~~~~e~~~~~~~~~~~~  161 (263)
T d1u94a1          82 GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL  161 (263)
T ss_dssp             TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CH
T ss_pred             CCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHhcCCCCEEEEECccccccchhcccccccchHHH
Confidence            99999999999999999999999999999999999999999888888778899999999999987555555555555667


Q ss_pred             HHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          227 QARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       227 ~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      +++.++..++.|..++++.+++||++||++.++
T Consensus       162 ~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~~  194 (263)
T d1u94a1         162 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI  194 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCEEEEEEC-----
T ss_pred             HHHHHHHHHHHHHHhhhccCceEEEEEEEEecc
Confidence            788899999999999999999999999998665

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.8e-29  Score=217.85  Aligned_cols=194  Identities=60%  Similarity=0.949  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152           65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus        65 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ...+++.++..|++.+++.....+++. ....++.||||+..||.++|.||++.|.++.|+|+||+||||||++++.+++
T Consensus         7 ~~k~~~~~~~~i~k~~g~~~i~~~~~~-~~~~~~~i~TG~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q   85 (269)
T d1mo6a1           7 REKALELAVAQIEKSYGKGSVMRLGDE-ARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ   85 (269)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSSCCTTCC-CCCCSCCBCCSCHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcceEECCCc-cCCccceEccCCHHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence            355788899999999998776655542 4456789999999999999668999999999999999999999999999999


Q ss_pred             hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhH
Q 024152          145 RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHM  224 (271)
Q Consensus       145 ~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~  224 (271)
                      ..++.|+|+++|..+.+.+++.+|++++++.+.++.+.|+.+..+..+..+..++++||||+..++++.++.+..++.+.
T Consensus        86 ~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~al~~~~E~e~~~~~~~~  165 (269)
T d1mo6a1          86 AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHV  165 (269)
T ss_dssp             HTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTTCEEEEEEECSTTCCCHHHHC-------C
T ss_pred             cCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEecccccccHHHhccccccchH
Confidence            99999999999999999999999999999999999999999999998888888999999999999987777665555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          225 AMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       225 ~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      ..+++.++..++.|..++.+.+++++++||++..+
T Consensus       166 ~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~~~  200 (269)
T d1mo6a1         166 GLQARLMSQALRKMTGALNNSGTTAIFINQLRDKI  200 (269)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhhhheeeccC
Confidence            57889999999999999999999999999999766

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=99.87  E-value=9.3e-22  Score=169.72  Aligned_cols=152  Identities=14%  Similarity=0.188  Sum_probs=110.5

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCCCCHHH----HHHcCCc
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSL----AETIGVK  170 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~~~~~~----~~~~g~~  170 (271)
                      ...+|+||++.||.+++  |+.+|++++|+|+||+|||+|+.+++.+++. .+.+|+|++.|++..+..    +...++.
T Consensus        14 ~~~~i~TG~~~lD~~~~--G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~~~~r~~~~~~~~~   91 (277)
T d1cr2a_          14 SVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR   91 (277)
T ss_dssp             CSCBCCCSCTTHHHHHC--SBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC
T ss_pred             CccccCCCchhHHHHhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccchhhHHhHHHHHhhcCC
Confidence            67899999999999997  9999999999999999999999999998775 466899999998765422    1122222


Q ss_pred             C--------------------------Ccceec---CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccch
Q 024152          171 T--------------------------ENLLLA---QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGD  221 (271)
Q Consensus       171 ~--------------------------~~~~~~---~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~  221 (271)
                      .                          ..+..+   ...+.+++...++.....+++++|+|||++.+.+...      .
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~------~  165 (277)
T d1cr2a_          92 LRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASG------E  165 (277)
T ss_dssp             GGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC-------------
T ss_pred             chhhcccccchhhhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhhhccCcceEEEccccccccccc------c
Confidence            1                          111222   2345677777787777788999999999988763111      1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          222 AHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       222 ~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                         ......+.++++.|+.+|++++|+|++++|+...
T Consensus       166 ---~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~  199 (277)
T d1cr2a_         166 ---SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNP  199 (277)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC--
T ss_pred             ---cchhHHHHHHHHHHHHHhhhccccceeecccccc
Confidence               1122446677788888899999999999999853

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=99.82  E-value=7.4e-20  Score=154.25  Aligned_cols=148  Identities=20%  Similarity=0.207  Sum_probs=114.1

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHH--HHHHcCCcCCc-
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTEN-  173 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~--~~~~~g~~~~~-  173 (271)
                      -..+|||++.||.+++ ||+++|.+++|.|+||+|||+|+++++.++...+..++|++.|+.....  .+..++++.+. 
T Consensus         5 ~~ri~TG~~~LD~~l~-GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~   83 (242)
T d1tf7a2           5 NVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEM   83 (242)
T ss_dssp             CCEECCSCHHHHHHTT-SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHH
T ss_pred             CCccCCCcHHHHHhhc-CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHH
Confidence            3569999999999999 9999999999999999999999999999999988899999998776542  33445554332 


Q ss_pred             -----ceecC----CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 024152          174 -----LLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL  244 (271)
Q Consensus       174 -----~~~~~----~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake  244 (271)
                           +.+..    .....+.+..+.......++++++||++..+...        ..     ...+...+..|.+++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~--------~~-----~~~~~~~~~~l~~~~~~  150 (242)
T d1tf7a2          84 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--------VS-----NNAFRQFVIGVTGYAKQ  150 (242)
T ss_dssp             HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--------SC-----HHHHHHHHHHHHHHHHH
T ss_pred             hhcCceEEEEeecchhhHHHHHHHHHHHHHhcCCceeeeecchhhhcC--------CC-----HHHHHHHHHHHHHHHHH
Confidence                 22221    2345667777777777889999999999988631        11     12344666777778999


Q ss_pred             cCcEEEEEcccccc
Q 024152          245 SQTILIFINQVFSI  258 (271)
Q Consensus       245 ~~~~Vi~~sql~~~  258 (271)
                      .++++++++|....
T Consensus       151 ~~~~~i~~~~~~~~  164 (242)
T d1tf7a2         151 EEITGLFTNTSDQF  164 (242)
T ss_dssp             TTCEEEEEEECSSS
T ss_pred             cCCeEEEEEeeEee
Confidence            99999999997643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=99.79  E-value=2.1e-19  Score=149.93  Aligned_cols=150  Identities=17%  Similarity=0.174  Sum_probs=107.2

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCHH--HHHHcCCcCC
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPS--LAETIGVKTE  172 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~~--~~~~~g~~~~  172 (271)
                      .+++||||++.||.+++ ||+++|+++.|+|+||+|||+|+++++.+.+.. +..++|++.|+.....  .....++..+
T Consensus         4 ~~~~i~TGi~~LD~~l~-GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~   82 (242)
T d1tf7a1           4 AIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA   82 (242)
T ss_dssp             SCCEECCCCTTHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred             CCCcccCCcHHHHHhhc-CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChH
Confidence            67899999999999999 999999999999999999999999998876654 4578999988775432  2222232221


Q ss_pred             c------------------ceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHH
Q 024152          173 N------------------LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA  234 (271)
Q Consensus       173 ~------------------~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~  234 (271)
                      .                  .......+..++++.+.....++++++++||++..+....      ...      ......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~------~~~------~~~~~~  150 (242)
T d1tf7a1          83 KLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY------DAS------SVVRRE  150 (242)
T ss_dssp             HHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT------CCH------HHHHHH
T ss_pred             HHHHhcchhhhhhccchhhhhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHhc------cCh------hHHHHH
Confidence            1                  0111112234556666666777789999999998876311      111      223345


Q ss_pred             HHHHHHHHhhcCcEEEEEcccccc
Q 024152          235 LRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       235 ~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      ...+...+++.++++++++|....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~  174 (242)
T d1tf7a1         151 LFRLVARLKQIGATTVMTTERIEE  174 (242)
T ss_dssp             HHHHHHHHHHHTCEEEEEEECSSS
T ss_pred             HHHHHHHHHhcCCceEEeeccccc
Confidence            666677788999999999998754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.9e-18  Score=144.54  Aligned_cols=158  Identities=27%  Similarity=0.430  Sum_probs=111.1

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCHHHHH----
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPSLAE----  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~~~~~----  165 (271)
                      .+.+||||++.||.+++ ||+++|++++|+|+||+|||+|+++++.++...      ...+.|++.+......+..    
T Consensus        15 ~~~ri~TGi~~LD~~lg-GGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (258)
T d1v5wa_          15 MVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD   93 (258)
T ss_dssp             GCCCBCCSCHHHHHHTT-SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHH
T ss_pred             CCceecCCCHHHHHhhc-CCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHHHh
Confidence            46789999999999999 999999999999999999999999999987642      2368888888777643322    


Q ss_pred             HcCCcC----CcceecCCCCHHHHHHHHHHH-----HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHH
Q 024152          166 TIGVKT----ENLLLAQPDCGEQALSLVDTL-----IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR  236 (271)
Q Consensus       166 ~~g~~~----~~~~~~~~~~~~e~~~~~~~l-----~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r  236 (271)
                      ..+...    .++......+.++.......+     .....++++++|++..+... ...   +..........++....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vid~~~~~~~~-~~~---~~~~~~~~~~~l~~~~~  169 (258)
T d1v5wa_          94 RFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV-DFS---GRGELAERQQKLAQMLS  169 (258)
T ss_dssp             HTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH-HCC---GGGCHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhcccccccCcHHHHHHHHHHHHHHhhhhccCceEEEeeehhhhhhc-ccc---CCcchhHHHHHHHHHHH
Confidence            233222    234444445544443332222     12345789999999876531 111   22234456677888999


Q ss_pred             HHHHHHhhcCcEEEEEcccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .|++++++.++++++++|.+..
T Consensus       170 ~L~~~~~~~~~~~~~~~~~~~~  191 (258)
T d1v5wa_         170 RLQKISEEYNVAVFVTNQMTAD  191 (258)
T ss_dssp             HHHHHHHHHTCEEEEEECC---
T ss_pred             HHHHHHHhcCCEEEEeeeEeec
Confidence            9999999999999999998754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.74  E-value=1.1e-17  Score=141.06  Aligned_cols=159  Identities=26%  Similarity=0.394  Sum_probs=109.3

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHHHHHH---
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPSLAET---  166 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~~~~~---  166 (271)
                      .+.++|||++.||.+++ ||+++|++++|+|+||+|||||+++++.+.+.      .++.++|++.+........+.   
T Consensus        14 ~i~ri~TGi~~LD~ll~-GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (254)
T d1pzna2          14 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ   92 (254)
T ss_dssp             TCCEECCSCHHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred             CCCeECCCCHHHHHhhc-CCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHHHHHHH
Confidence            67889999999999999 99999999999999999999999999998874      256889999887776543332   


Q ss_pred             -cCCcCCc----ceecCCCCHHHHHHHHHH--------HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152          167 -IGVKTEN----LLLAQPDCGEQALSLVDT--------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ  233 (271)
Q Consensus       167 -~g~~~~~----~~~~~~~~~~e~~~~~~~--------l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~  233 (271)
                       .+++++.    .......+..+.......        ......+.++++|++..++. ....   .........+.+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viDs~~~~~~-~~~~---~~~~~~~~~~~~~~  168 (254)
T d1pzna2          93 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYI---GRGALAERQQKLAK  168 (254)
T ss_dssp             TTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH-HHCC---STTTHHHHHHHHHH
T ss_pred             hcCCChHHhhhhhhhhhhccchhHHHHHHhhhhhhHHHHhhccCceeEeecchhheee-hhhc---ccchhhhhHHHHHH
Confidence             3333222    222223333332222111        11234678999999987652 1111   12223355566777


Q ss_pred             HHHHHHHHHhhcCcEEEEEccccccc
Q 024152          234 ALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       234 ~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      ..+.++.++...++++++++|.+...
T Consensus       169 ~~~~~~~~~~~~~~~v~~~~~~~~~~  194 (254)
T d1pzna2         169 HLADLHRLANLYDIAVFVTNQVQARP  194 (254)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECC---
T ss_pred             HHHHHHHHhhccceEEEecceEeecc
Confidence            88888888999999999999987643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.1e-17  Score=140.14  Aligned_cols=159  Identities=26%  Similarity=0.451  Sum_probs=110.2

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHH----HHH
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LAE  165 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~----~~~  165 (271)
                      .+..||||++.||.+++ ||+++|++++|+|+||+|||||+++++.+++.      .++.++|++.+......    ...
T Consensus        12 ~~~~i~TGi~~LD~ll~-GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   90 (251)
T d1szpa2          12 ELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ   90 (251)
T ss_dssp             SSCEECCSCHHHHHHHT-SSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHH
T ss_pred             CCCeecCCCHHHHhhhC-CCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHH
Confidence            67889999999999999 99999999999999999999999999987653      34578999988776542    233


Q ss_pred             HcCCcCC----cceecCC---CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152          166 TIGVKTE----NLLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL  238 (271)
Q Consensus       166 ~~g~~~~----~~~~~~~---~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L  238 (271)
                      ..+++..    ++.+...   ....................++++|++..+.... ...   ..........+....+.|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~l  166 (251)
T d1szpa2          91 RFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD-FSG---RGELSARQMHLAKFMRAL  166 (251)
T ss_dssp             HTCCCHHHHGGGEEEEECCSTTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGSCC---------CTHHHHHHHHHHHHHH
T ss_pred             hcCCchhhhhcceEEEeccchhHHHHHHHHHHHHhhccccceeeehhhhhhhhhh-hcc---ccchhhHHHHHHHHHHHH
Confidence            4454432    2223222   2233334344444555678899999998776321 111   112224455667778888


Q ss_pred             HHHHhhcCcEEEEEccccccc
Q 024152          239 SHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~~~~  259 (271)
                      ..++...++++++++|.+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~  187 (251)
T d1szpa2         167 QRLADQFGVAVVVTNQVVAQV  187 (251)
T ss_dssp             HHHHHHHCCCEEEEEECC---
T ss_pred             HhhhhhcceEEEEEEEEEecc
Confidence            888999999999999987543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=130.76  Aligned_cols=158  Identities=23%  Similarity=0.319  Sum_probs=96.7

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEcCCCCCCHHHHHH----
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDPSLAET----  166 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~------g~v~~~~~e~~~~~~~~~~----  166 (271)
                      +.+||||++.||.+++ ||+++|++++|+|+||+|||+|+++++.+++..+      ....++.............    
T Consensus         2 ~~ri~TG~~~LD~ll~-GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (242)
T d1n0wa_           2 IIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER   80 (242)
T ss_dssp             CCEECCSCHHHHHHTT-TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred             CCEEcCCCHHHHHhhc-CCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHHHHHHHhh
Confidence            5789999999999999 9999999999999999999999999999887432      2345555554444322211    


Q ss_pred             cCCcC----CcceecCCCCHH---HHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHH
Q 024152          167 IGVKT----ENLLLAQPDCGE---QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLS  239 (271)
Q Consensus       167 ~g~~~----~~~~~~~~~~~~---e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~  239 (271)
                      .....    ............   +...............++.+|.+..+.......    ...............+.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~  156 (242)
T d1n0wa_          81 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG----RGELSARQMHLARFLRMLL  156 (242)
T ss_dssp             TTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----------CHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhchhhhhhhhhhhhhhhhhhhheeecccceeeeehhhhhc----ccchhhhHHHHHHHHHHHH
Confidence            11111    112222222322   222223333344567788888876665322211    1222344555667788888


Q ss_pred             HHHhhcCcEEEEEccccccc
Q 024152          240 HSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       240 ~lake~~~~Vi~~sql~~~~  259 (271)
                      .++++.+++++++.|+....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~  176 (242)
T d1n0wa_         157 RLADEFGVAVVITNQVVAQV  176 (242)
T ss_dssp             HHHHHHCCEEEEEC------
T ss_pred             HhhhhcceeEEEEEEEeccc
Confidence            88999999999999997543

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.67  E-value=2.8e-16  Score=131.29  Aligned_cols=159  Identities=26%  Similarity=0.362  Sum_probs=109.6

Q ss_pred             CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc----------------CCeEEEEcCCCCC
Q 024152           96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----------------GGYCVFIDAEHAL  159 (271)
Q Consensus        96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~----------------~g~v~~~~~e~~~  159 (271)
                      .+.++|||++.||.+++ ||+++|++++|+|+||+|||+|+++++.+++..                ..+++|++.|...
T Consensus        12 ~~~~i~TG~~~LD~ll~-GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~   90 (258)
T d2i1qa2          12 TVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF   90 (258)
T ss_dssp             TCCEECCSCHHHHHHTT-SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCC
T ss_pred             CCceecCCCHHHHHhcC-CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCc
Confidence            56789999999999999 899999999999999999999999999988743                2357889888766


Q ss_pred             CHHH----HHHcCCcC----CcceecCCCCHHHHHHHH----HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHH
Q 024152          160 DPSL----AETIGVKT----ENLLLAQPDCGEQALSLV----DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ  227 (271)
Q Consensus       160 ~~~~----~~~~g~~~----~~~~~~~~~~~~e~~~~~----~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~  227 (271)
                      ....    ........    ..+.........+.....    ..+.......++++|.+..+..... .   .......+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vid~i~~~~~~~~-~---~~~~~~~~  166 (258)
T d2i1qa2          91 RPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEY-T---GRGKLAER  166 (258)
T ss_dssp             CHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHC-C---CTTSHHHH
T ss_pred             CHHHHHHHHhhcchhhhhhhhcceeeccCchhhHHHHHHHHHHHHHHhcccceeeeeEEEEeechhc-c---ccccchhh
Confidence            5432    22333332    233344444444433332    2233345678888998876653111 1   12233345


Q ss_pred             HHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152          228 ARLMSQALRKLSHSLSLSQTILIFINQVFSIN  259 (271)
Q Consensus       228 ~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~  259 (271)
                      ........+.++.+++..++++++++|.+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (258)
T d2i1qa2         167 QQKLGRHMATLNKLADLFNCVVLVTNQVSAKP  198 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEEECEECC-
T ss_pred             HHHHHHHHHHHHHhhhhcceEEEeecceEecc
Confidence            55667778888888999999999999987543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.2e-17  Score=138.46  Aligned_cols=140  Identities=16%  Similarity=0.173  Sum_probs=76.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+++|++++|+||||||||||++++++...+++|.|.+.+......+...+.+|+.+|+..+++.+++.|++.+......
T Consensus        22 ~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~  101 (232)
T d2awna2          22 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG  101 (232)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC------------------
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcC
Confidence            57799999999999999999999999999999998655443322222344679999999988888898887765433211


Q ss_pred             cC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHh
Q 024152          195 SG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLS  243 (271)
Q Consensus       195 ~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lak  243 (271)
                      ..          -++.+-+......+ ..++++  |++||+..++++.                     ++...|+++.+
T Consensus       102 ~~~~~~~~~v~~~l~~~~l~~~~~~~-~~~LSG--GqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~  178 (232)
T d2awna2         102 AKKEVINQRVNQVAEVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK  178 (232)
T ss_dssp             ---CHHHHHHHHHHHHC------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            00          01222222222222 234444  8899999998882                     45556777788


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      +.|+|||+++|-..
T Consensus       179 ~~g~tii~vTHd~~  192 (232)
T d2awna2         179 RLGRTMIYVTHDQV  192 (232)
T ss_dssp             HSCCEEEEEESCHH
T ss_pred             hcCCEEEEEeCCHH
Confidence            99999999999763

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.63  E-value=1.3e-16  Score=133.31  Aligned_cols=139  Identities=15%  Similarity=0.118  Sum_probs=99.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .+++|++++|+||||||||||++++++...+++|.|.| +++... .....+.+|+.+|+..+++.+++.|++.+...+.
T Consensus        22 ~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~-~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~  100 (229)
T d3d31a2          22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL-DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK  100 (229)
T ss_dssp             EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE-TTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEE-ccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhc
Confidence            68899999999999999999999999999999998655 443322 2244678999999999999999999988766543


Q ss_pred             hcCCcc-------EEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhhc
Q 024152          194 RSGSVD-------VVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSLS  245 (271)
Q Consensus       194 ~~~~~~-------lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake~  245 (271)
                      ......       .+-+..+.... ..+++  .|++||...+|++                     .++...++.+.++.
T Consensus       101 ~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--GG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~  177 (229)
T d3d31a2         101 KIKDPKRVLDTARDLKIEHLLDRN-PLTLS--GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN  177 (229)
T ss_dssp             CCCCHHHHHHHHHHTTCTTTTTSC-GGGSC--HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHhcchhhHhCC-hhhCC--HHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcC
Confidence            211110       00011111111 12333  3889999999987                     34555666778899


Q ss_pred             CcEEEEEccccc
Q 024152          246 QTILIFINQVFS  257 (271)
Q Consensus       246 ~~~Vi~~sql~~  257 (271)
                      ++|||+++|-..
T Consensus       178 g~tii~vtHd~~  189 (229)
T d3d31a2         178 KLTVLHITHDQT  189 (229)
T ss_dssp             TCEEEEEESCHH
T ss_pred             CcEEEEEcCCHH
Confidence            999999999763

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=6.2e-17  Score=136.17  Aligned_cols=140  Identities=13%  Similarity=0.177  Sum_probs=91.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      -+++|++++|.||||||||||++++++...|++|.|.+.+..-.......+.+|+.+|+..+++..++.|++.+......
T Consensus        28 ~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~  107 (239)
T d1v43a3          28 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK  107 (239)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999998554432222222334679999999999888999887754221100


Q ss_pred             ----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHh
Q 024152          195 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLS  243 (271)
Q Consensus       195 ----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lak  243 (271)
                                ..-++.+-++.....+ ..++++  |++||+..++++                     .++...+.++.+
T Consensus       108 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSG--Gq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~  184 (239)
T d1v43a3         108 FPKDEIDKRVRWAAELLQIEELLNRY-PAQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ  184 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSC-TTTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhcCC-hhhCCH--HHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHH
Confidence                      0001111122333333 244554  899999999998                     345556677788


Q ss_pred             hcCcEEEEEccccc
Q 024152          244 LSQTILIFINQVFS  257 (271)
Q Consensus       244 e~~~~Vi~~sql~~  257 (271)
                      +.|+|||+++|-..
T Consensus       185 ~~g~tii~vTHd~~  198 (239)
T d1v43a3         185 KLKVTTIYVTHDQV  198 (239)
T ss_dssp             HHTCEEEEEESCHH
T ss_pred             hcCCeEEEEeCCHH
Confidence            89999999999763

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.2e-16  Score=132.90  Aligned_cols=139  Identities=17%  Similarity=0.209  Sum_probs=98.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENLLLAQPDCGEQALSL  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~  188 (271)
                      -+++|++++|+||||||||||+++|++...+++|.|.| +++...  . .   .+++.+|+.+|+..+++..++.|++.+
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~-~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~  105 (240)
T d3dhwc1          27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV-DGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL  105 (240)
T ss_dssp             EECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEE-TTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEE-cCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHH
Confidence            67799999999999999999999999999999998555 433221  1 1   334679999999988888899888776


Q ss_pred             HHHHHhcCC----------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152          189 VDTLIRSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK  237 (271)
Q Consensus       189 ~~~l~~~~~----------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~  237 (271)
                      .........          ++.+-++.....++ .+++  .|++||+..++++.                     ++...
T Consensus       106 ~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-~~LS--GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~  182 (240)
T d3dhwc1         106 PLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-SNLS--GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL  182 (240)
T ss_dssp             HHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-SCCC--HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-hhCC--HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHH
Confidence            544321100          11111222222221 3344  38999999999983                     45567


Q ss_pred             HHHHHhhcCcEEEEEccccc
Q 024152          238 LSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       238 L~~lake~~~~Vi~~sql~~  257 (271)
                      |+.+.++.|+|||+++|-..
T Consensus       183 l~~l~~~~g~tvi~vTHdl~  202 (240)
T d3dhwc1         183 LKDINRRLGLTILLITHEMD  202 (240)
T ss_dssp             HHHHHHHHCCEEEEEBSCHH
T ss_pred             HHHHHhccCCEEEEEcCCHH
Confidence            77778889999999999763

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.59  E-value=5e-16  Score=130.00  Aligned_cols=138  Identities=18%  Similarity=0.230  Sum_probs=97.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H----HHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P----SLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~----~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|+||||||||||++++++...+++|.|. |++....  . +    .+++.+|+.+|+..+++..++.|++.
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~-~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~  105 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY-IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE  105 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeE-ECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHh
Confidence            6779999999999999999999999999999999855 4443221  1 1    23457999999998888899998877


Q ss_pred             HHHHHHhcCCc-------------cEEEE-cchhhhcCCCccCCccchhhHHHHHHHH---------------------H
Q 024152          188 LVDTLIRSGSV-------------DVVVV-DSVAALVPKGELDGEMGDAHMAMQARLM---------------------S  232 (271)
Q Consensus       188 ~~~~l~~~~~~-------------~lvvI-D~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~  232 (271)
                      +...+......             +++-+ |.+...+| .+++  .|++||+..++++                     .
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-~~LS--GGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~  182 (230)
T d1l2ta_         106 LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-NQLS--GGQQQRVAIARALANNPPIILADQPTGALDSKTGE  182 (230)
T ss_dssp             HHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-GGSC--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-hhCC--HHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHH
Confidence            65443211110             00001 11111111 2344  4899999999998                     3


Q ss_pred             HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 ~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ++...|+.+.++.|+|||+++|-.
T Consensus       183 ~i~~~l~~l~~~~g~tii~vTHd~  206 (230)
T d1l2ta_         183 KIMQLLKKLNEEDGKTVVVVTHDI  206 (230)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCH
T ss_pred             HHHHHHHHHHHhhCCEEEEECCCH
Confidence            466677777889999999999964

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.58  E-value=1.5e-16  Score=134.01  Aligned_cols=139  Identities=14%  Similarity=0.145  Sum_probs=98.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENLLLAQPDCGEQALS  187 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~~~~~~~~~~e~~~  187 (271)
                      -+++|++++|+||||||||||++++++...+++|.|.+ +.....       .....+.+|+.+|+..+++.+++.|++.
T Consensus        25 ~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~-~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~  103 (240)
T d1g2912          25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA  103 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE-TTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEE-CCEEecccchhhhcccccccceecccchhhcchhhhhHhhh
Confidence            57799999999999999999999999999999998654 432211       1123567999999999998899999887


Q ss_pred             HHHHHHhcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152          188 LVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR  236 (271)
Q Consensus       188 ~~~~l~~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r  236 (271)
                      +........          -+..+-+......+ ..++++  |++||+..++++.                     .+.+
T Consensus       104 ~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~-p~~LSG--GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~  180 (240)
T d1g2912         104 FPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-PRELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA  180 (240)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH
T ss_pred             hhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHH
Confidence            754432100          01111122222222 133443  8999999999983                     4555


Q ss_pred             HHHHHHhhcCcEEEEEccccc
Q 024152          237 KLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       237 ~L~~lake~~~~Vi~~sql~~  257 (271)
                      .|.++.++.|+|||+++|-..
T Consensus       181 ~l~~l~~~~g~tvi~vTHd~~  201 (240)
T d1g2912         181 ELKKLQRQLGVTTIYVTHDQV  201 (240)
T ss_dssp             HHHHHHHHHTCEEEEEESCHH
T ss_pred             HHHHHHhccCCEEEEEcCCHH
Confidence            667778889999999999764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.57  E-value=1.2e-16  Score=134.46  Aligned_cols=147  Identities=20%  Similarity=0.205  Sum_probs=100.7

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-----CCHHHHHHcCCcCCcceecCCC
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-----LDPSLAETIGVKTENLLLAQPD  180 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-----~~~~~~~~~g~~~~~~~~~~~~  180 (271)
                      .||.+.-  -+++|++++|.||||||||||++++++...+++|.|.|.+.+..     ..+.+.+.+|+.+|+..+++.+
T Consensus        20 aL~~vsl--~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~l   97 (242)
T d1oxxk2          20 ALDNVNI--NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL   97 (242)
T ss_dssp             EEEEEEE--EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred             EEeceEE--EECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccc
Confidence            3444433  68899999999999999999999999999999998655332211     1123456799999999888888


Q ss_pred             CHHHHHHHHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH-------------------
Q 024152          181 CGEQALSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM-------------------  231 (271)
Q Consensus       181 ~~~e~~~~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l-------------------  231 (271)
                      ++.|++.+..+...          ..-++.+-++.....++ .++++  |++||+..+|++                   
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-~~LSG--GqkQRvaiARaL~~~P~llllDEPt~~LD~~  174 (242)
T d1oxxk2          98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-RELSG--AQQQRVALARALVKDPSLLLLDEPFSNLDAR  174 (242)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred             cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh-hhCCH--HHHhHHHHHhHHhhcccceeecCCccCCCHH
Confidence            99988765321100          00011111233333332 34444  899999999998                   


Q ss_pred             --HHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          232 --SQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       232 --~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                        .++.+.++++.++.|+|||+++|-..
T Consensus       175 ~~~~i~~~i~~l~~~~g~tvi~vTHd~~  202 (242)
T d1oxxk2         175 MRDSARALVKEVQSRLGVTLLVVSHDPA  202 (242)
T ss_dssp             GHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence              34555667778899999999999753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.54  E-value=4.8e-16  Score=130.55  Aligned_cols=136  Identities=13%  Similarity=0.131  Sum_probs=92.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH-----H
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL-----I  193 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l-----~  193 (271)
                      +++++|.||||||||||+++|++...|++|.|.|.+.+-.......+.+|+.+|+..+++.+++.|++.+..+.     .
T Consensus        24 ~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~  103 (240)
T d2onka1          24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVER  103 (240)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHH
T ss_pred             CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHHH
Confidence            47999999999999999999999999999985554322221122346799999999888888999887653110     0


Q ss_pred             h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhhcCcEE
Q 024152          194 R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSLSQTIL  249 (271)
Q Consensus       194 ~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake~~~~V  249 (271)
                      .   ..-++.+-++.+...++ .++++  |++||+..++++                     ..+...++.+.++.++||
T Consensus       104 ~~~v~~~l~~~gl~~~~~~~~-~~LSG--G~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tv  180 (240)
T d2onka1         104 DRRVREMAEKLGIAHLLDRKP-ARLSG--GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI  180 (240)
T ss_dssp             HHHHHHHHHTTTCTTTTTCCG-GGSCH--HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHhcCcHhhhhCCh-hhCCH--HHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence            0   00011111222222221 34444  899999999998                     345556667788899999


Q ss_pred             EEEccccc
Q 024152          250 IFINQVFS  257 (271)
Q Consensus       250 i~~sql~~  257 (271)
                      |+++|-..
T Consensus       181 i~vtHd~~  188 (240)
T d2onka1         181 LHVTHDLI  188 (240)
T ss_dssp             EEEESCHH
T ss_pred             EEEeCCHH
Confidence            99999653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3.5e-14  Score=121.12  Aligned_cols=144  Identities=16%  Similarity=0.244  Sum_probs=92.1

Q ss_pred             cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCeEEEEcCCCCCCHHH--HHHc
Q 024152          100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDPSL--AETI  167 (271)
Q Consensus       100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~----------~~g~v~~~~~e~~~~~~~--~~~~  167 (271)
                      +..+.+.+|.+++  |+.||++++|+|+||+|||||++++|..++.          ..++|+|++.|+......  ...+
T Consensus        12 ~~~~~p~~d~li~--G~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~~~~~Rl~~~   89 (274)
T d1nlfa_          12 FAAAPPPLDYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL   89 (274)
T ss_dssp             HHSCCCCCCEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHH
T ss_pred             hcCCCCCHHHHhC--CccCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchHHHHHHHHHHH
Confidence            3445677888887  7888999999999999999999999998763          245799999988654311  1111


Q ss_pred             --CCcC-------CcceecC------CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH
Q 024152          168 --GVKT-------ENLLLAQ------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS  232 (271)
Q Consensus       168 --g~~~-------~~~~~~~------~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~  232 (271)
                        ++..       ..+.+..      .....+.+.....  ...++++||||++..+.+..+           +....+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvviD~l~~~~~~~~-----------~~~~~~~  156 (274)
T d1nlfa_          90 GAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKR--AAEGRRLMVLDTLRRFHIEEE-----------NASGPMA  156 (274)
T ss_dssp             HTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHH--HHTTCSEEEEECGGGGCCSCT-----------TCHHHHH
T ss_pred             hhccChhhhhcccccceeccccCccchhHHHHHHHHHHH--hccCccEEecCchhhhccccc-----------cchhhHH
Confidence              1110       0111111      1111222222222  235789999999998864211           1113345


Q ss_pred             HHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          233 QALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       233 ~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      .+.+.|+.++++++|+|+++.|..+.
T Consensus       157 ~~~~~l~~la~~~~~~vi~v~H~~K~  182 (274)
T d1nlfa_         157 QVIGRMEAIAADTGCSIVFLHHASKG  182 (274)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred             HHHHHHHHHhhcCCCceehhhhcccc
Confidence            66777888899999999999998753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.46  E-value=2.6e-14  Score=121.62  Aligned_cols=137  Identities=15%  Similarity=0.185  Sum_probs=92.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC------------C----HHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~------------~----~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|++++|+||||||||||++.+++...+++|.|.| +++...            .    ..+++.+|+.+|+..+++
T Consensus        24 ~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~-~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~  102 (258)
T d1b0ua_          24 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV-NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS  102 (258)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE-TTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEE-CCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhcc
Confidence            67799999999999999999999999999999998654 433211            1    246678999999998888


Q ss_pred             CCCHHHHHHHHHHHHhcC-----------CccEEEE-cchhhhcCCCccCCccchhhHHHHHHHHH--------------
Q 024152          179 PDCGEQALSLVDTLIRSG-----------SVDVVVV-DSVAALVPKGELDGEMGDAHMAMQARLMS--------------  232 (271)
Q Consensus       179 ~~~~~e~~~~~~~l~~~~-----------~~~lvvI-D~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------  232 (271)
                      .+++.+++..........           -+..+-+ +.....++ .++++  |++||+..++++.              
T Consensus       103 ~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-~~LSG--G~~QRv~iAraL~~~P~llilDEPT~g  179 (258)
T d1b0ua_         103 HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-VHLSG--GQQQRVSIARALAMEPDVLLFDEPTSA  179 (258)
T ss_dssp             TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-GGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred             chhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-ccccH--HHHHHHHHHHHHhcCCCEEEecccccc
Confidence            889887765432111000           0111111 11222222 34444  8999999999883              


Q ss_pred             -------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152          233 -------QALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       233 -------~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                             ++.+.|+++.+ .|+|||+++|-.
T Consensus       180 LD~~~~~~i~~ll~~l~~-~g~til~vtHdl  209 (258)
T d1b0ua_         180 LDPELVGEVLRIMQQLAE-EGKTMVVVTHEM  209 (258)
T ss_dssp             SCHHHHHHHHHHHHHHHH-TTCCEEEECSCH
T ss_pred             CCHHHHHHHHHhhhhhcc-cCCceEEEeCCH
Confidence                   45556666554 589999999965

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.42  E-value=1e-13  Score=116.67  Aligned_cols=140  Identities=16%  Similarity=0.231  Sum_probs=88.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHH--cCCcCCcceecCCCCHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAET--IGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~--~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      -+++|++++|+||||||||||++++++...+++|.|.|.+.+... ......+  +++.+|...+++.+++.+++.....
T Consensus        28 ~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~  107 (240)
T d1ji0a_          28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY  107 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHH
Confidence            577999999999999999999999999999999986654433222 2233333  5578888888888898877543221


Q ss_pred             HHhcCC-----ccEE--EEcchhhhcCC--CccCCccchhhHHHHHHHH---------------------HHHHHHHHHH
Q 024152          192 LIRSGS-----VDVV--VVDSVAALVPK--GELDGEMGDAHMAMQARLM---------------------SQALRKLSHS  241 (271)
Q Consensus       192 l~~~~~-----~~lv--vID~l~~~~~~--~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~l  241 (271)
                      ......     ...+  .++.+.....+  .+++  .|++|+...++++                     .++...++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LS--GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l  185 (240)
T d1ji0a_         108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLS--GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI  185 (240)
T ss_dssp             TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSC--HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCC--HHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHH
Confidence            100000     0000  01111111111  2333  3788888888887                     2344455555


Q ss_pred             HhhcCcEEEEEccccc
Q 024152          242 LSLSQTILIFINQVFS  257 (271)
Q Consensus       242 ake~~~~Vi~~sql~~  257 (271)
                      .+ .|+||++++|...
T Consensus       186 ~~-~g~til~~tH~l~  200 (240)
T d1ji0a_         186 NQ-EGTTILLVEQNAL  200 (240)
T ss_dssp             HH-TTCCEEEEESCHH
T ss_pred             Hh-CCCEEEEEeCCHH
Confidence            44 5999999999753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.41  E-value=5.3e-14  Score=119.53  Aligned_cols=81  Identities=23%  Similarity=0.196  Sum_probs=60.4

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH-H-HHHHcCCcCCcceecCCCCH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP-S-LAETIGVKTENLLLAQPDCG  182 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~-~-~~~~~g~~~~~~~~~~~~~~  182 (271)
                      .||.+.-  .+++|++++|+||||||||||++.+++...+++|.|.|.+.+-. ..+ . ....+++.+|...+++.+++
T Consensus        19 aL~~vs~--~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv   96 (254)
T d1g6ha_          19 ALDGVSI--SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV   96 (254)
T ss_dssp             EEEEECC--EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred             EEcceEE--EECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCee
Confidence            3444433  67899999999999999999999999999999998655443221 122 2 33347888999888888888


Q ss_pred             HHHHHH
Q 024152          183 EQALSL  188 (271)
Q Consensus       183 ~e~~~~  188 (271)
                      .|++.+
T Consensus        97 ~enl~~  102 (254)
T d1g6ha_          97 LENLLI  102 (254)
T ss_dssp             HHHHHG
T ss_pred             eeeeee
Confidence            887754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=7.6e-14  Score=117.34  Aligned_cols=140  Identities=14%  Similarity=0.143  Sum_probs=90.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .+++|++++|+||||+|||||++++++...|++|.+.+.+.+.... ...++.+++.+|...+++.+++.|++.+...+.
T Consensus        24 ~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~  103 (238)
T d1vpla_          24 EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY  103 (238)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc
Confidence            6789999999999999999999999999999999866544332222 255677999999988888888887765544332


Q ss_pred             hcCC----------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152          194 RSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL  242 (271)
Q Consensus       194 ~~~~----------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la  242 (271)
                      ....          ++.+-++...... ...++  .|++|+...++++.                     ++...++. .
T Consensus       104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~lS--gG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~-~  179 (238)
T d1vpla_         104 ASSSSEIEEMVERATEIAGLGEKIKDR-VSTYS--KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-A  179 (238)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCC--HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH-H
T ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHhhh-hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH-H
Confidence            1110          0000011111111 12233  37777777777762                     23333333 3


Q ss_pred             hhcCcEEEEEcccccc
Q 024152          243 SLSQTILIFINQVFSI  258 (271)
Q Consensus       243 ke~~~~Vi~~sql~~~  258 (271)
                      ++.|.||++++|....
T Consensus       180 ~~~g~tii~~tH~l~~  195 (238)
T d1vpla_         180 SQEGLTILVSSHNMLE  195 (238)
T ss_dssp             HHTTCEEEEEECCHHH
T ss_pred             HhcCCEEEEEeCCHHH
Confidence            4569999999997743

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.37  E-value=1.3e-13  Score=116.24  Aligned_cols=139  Identities=14%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceecCCCCHHHHHHH----
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLAQPDCGEQALSL----  188 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~----  188 (271)
                      -+++|++++|+||||||||||++.+++...|.+|.|.+.+.+  ......+++.+++.+|+..++.. ++.+++..    
T Consensus        24 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~  102 (242)
T d1mv5a_          24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG  102 (242)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCc-chhhheeccccc
Confidence            577999999999999999999999999999999986554322  11223456779999998766543 44443211    


Q ss_pred             ---------HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152          189 ---------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL  238 (271)
Q Consensus       189 ---------~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L  238 (271)
                               +.+.......-.-.-+.+..........-+.|++||...+|++.                     .+...|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l  182 (242)
T d1mv5a_         103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL  182 (242)
T ss_dssp             CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH
T ss_pred             ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH
Confidence                     11111000000000111111111111122348889999999884                     344455


Q ss_pred             HHHHhhcCcEEEEEcccc
Q 024152          239 SHSLSLSQTILIFINQVF  256 (271)
Q Consensus       239 ~~lake~~~~Vi~~sql~  256 (271)
                      +.++  .++|||+++|-.
T Consensus       183 ~~l~--~~~Tvi~itH~l  198 (242)
T d1mv5a_         183 DSLM--KGRTTLVIAHRL  198 (242)
T ss_dssp             HHHH--TTSEEEEECCSH
T ss_pred             HHHc--CCCEEEEEECCH
Confidence            5544  389999999965

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4e-13  Score=113.77  Aligned_cols=138  Identities=19%  Similarity=0.213  Sum_probs=88.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHH--
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLV--  189 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~--  189 (271)
                      -+++|++++|+||||||||||++.+++...|.+|.|. +++...   ..+.+++.+++.+|+..++. .++.+++.+.  
T Consensus        36 ~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~  113 (251)
T d1jj7a_          36 TLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLL-LDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT  113 (251)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEE-ECCEecchhhhHHHHHHhhhccccccccC-cchhhhhhhhhc
Confidence            6789999999999999999999999999999999854 554322   22467788999999987764 4666554321  


Q ss_pred             ---------HHHHhcCCccEEEEcc----hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHH
Q 024152          190 ---------DTLIRSGSVDVVVVDS----VAALVPKGELDGEMGDAHMAMQARLMS---------------------QAL  235 (271)
Q Consensus       190 ---------~~l~~~~~~~lvvID~----l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~  235 (271)
                               ..........  +++.    +..........-+.|++||...+|++.                     .+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~--~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~  191 (251)
T d1jj7a_         114 QKPTMEEITAAAVKSGAHS--FISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE  191 (251)
T ss_dssp             SCCCHHHHHHHHHHHTCHH--HHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHH--HHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHH
Confidence                     0000000000  0111    111111111122348999999999882                     344


Q ss_pred             HHHHHHHhhcCcEEEEEcccc
Q 024152          236 RKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       236 r~L~~lake~~~~Vi~~sql~  256 (271)
                      ..|..+.++.++|||+++|-.
T Consensus       192 ~~l~~l~~~~~~Tvi~itH~l  212 (251)
T d1jj7a_         192 QLLYESPERYSRSVLLITQHL  212 (251)
T ss_dssp             HHHHTCGGGGGCEEEEECSCH
T ss_pred             HHHHHHhhhcCCEEEEEeCCH
Confidence            455555667799999999965

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.34  E-value=1.1e-13  Score=113.45  Aligned_cols=136  Identities=20%  Similarity=0.250  Sum_probs=89.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      .+++|++++|.||||||||||++++++...|.+|.|.| ++....  .....+++.++...++...++++++.....+..
T Consensus        23 ~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~-~g~~i~--~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~   99 (200)
T d1sgwa_          23 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY-NGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG   99 (200)
T ss_dssp             EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE-TTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEE-CCEehh--HhcCcEEEEeecccCCCCcCHHHHHHHHHHhcC
Confidence            67799999999999999999999999999999998654 433221  234567788888777777888887766544321


Q ss_pred             cCCccEEEEcchhhhc------CCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhhcCc
Q 024152          195 SGSVDVVVVDSVAALV------PKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSLSQT  247 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~------~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake~~~  247 (271)
                      ....+--+.+.+..+.      ...+++  .|++||...++++                     ..+.+.+.+++++.++
T Consensus       100 ~~~~~~~~~~~l~~~~~~~~~~~~~~LS--gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~  177 (200)
T d1sgwa_         100 VKVNKNEIMDALESVEVLDLKKKLGELS--QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI  177 (200)
T ss_dssp             CCCCHHHHHHHHHHTTCCCTTSBGGGSC--HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred             CccCHHHHHHHHHHcCCcccccccCcCC--CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCE
Confidence            1100000112111110      011233  3778888888876                     2466678888888887


Q ss_pred             EEEEEccc
Q 024152          248 ILIFINQV  255 (271)
Q Consensus       248 ~Vi~~sql  255 (271)
                      +||..+|-
T Consensus       178 ~ii~~~~~  185 (200)
T d1sgwa_         178 VIISSREE  185 (200)
T ss_dssp             EEEEESSC
T ss_pred             EEEEEech
Confidence            77776654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.2e-12  Score=110.02  Aligned_cols=70  Identities=23%  Similarity=0.283  Sum_probs=54.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|+|++|||||||++.+++...+.+|.|. +++...   ....+++.+++.+|+..++. .++.+++
T Consensus        25 ~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~-i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi   97 (241)
T d2pmka1          25 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL-IDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNI   97 (241)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEE-ECCEEecccchhhhhceEEEEecccccCC-ccccccc
Confidence            5779999999999999999999999999999999854 554322   22467888999999876654 4555544

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.28  E-value=4.5e-12  Score=107.27  Aligned_cols=63  Identities=24%  Similarity=0.358  Sum_probs=50.7

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~  178 (271)
                      -+++|++++|+||||||||||++.+++...+..|.| +++.....   ...+++.+++.+|+..++.
T Consensus        37 ~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~  102 (253)
T d3b60a1          37 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNVHLFN  102 (253)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE-EETTEETTTBCHHHHHHTEEEECSSCCCCS
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEE-EECCcccchhhhhhhhheEEEEeeccccCC
Confidence            577999999999999999999999999999999985 45543322   2366778999999876654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=2.8e-11  Score=100.99  Aligned_cols=58  Identities=19%  Similarity=0.291  Sum_probs=40.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcc
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENL  174 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~  174 (271)
                      .+++|++++|+||||||||||++.+++. .+..|.|.| .++..   ....++...++.++..
T Consensus        21 ~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~~~~G~I~~-~g~~i~~~~~~~~~~~~~~~~~~~   81 (231)
T d1l7vc_          21 EVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQF-AGQPLEAWSATKLALHRAYLSQQQ   81 (231)
T ss_dssp             EEETTCEEECBCCTTSSHHHHHHHHHTS-CCCSSEEEE-SSSBGGGSCHHHHHHHEEEECSCC
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCceEEEE-CCEECCcCCHHHHHhhceeeeccc
Confidence            6779999999999999999999999995 467787554 44322   1123444455555543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.17  E-value=1.3e-11  Score=104.52  Aligned_cols=70  Identities=26%  Similarity=0.346  Sum_probs=54.5

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQPDCGEQAL  186 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~  186 (271)
                      -+++|++++|+|++|||||||++.+++...+.+|.|. ++...   .....+++.+++.+|+..++. .|+.+++
T Consensus        40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~-i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi  112 (255)
T d2hyda1          40 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL-IDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENI  112 (255)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE-ETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHH
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccc-cCCEEcccCCHHHhhheeeeeeccccCCC-CCHHHHH
Confidence            5779999999999999999999999999999999855 44332   222467888999999876654 4565554

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.5e-10  Score=99.23  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=33.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV  151 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~  151 (271)
                      -+++|++++|+||||||||||++.|++...+..|.|.
T Consensus        58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~   94 (281)
T d1r0wa_          58 NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK   94 (281)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEE
Confidence            5789999999999999999999999999999877644

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.67  E-value=1.6e-08  Score=79.38  Aligned_cols=32  Identities=22%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      ++|.||||+|||||++.+++.+.+..|.+...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~   34 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTE   34 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEE
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEEC
Confidence            78999999999999999999999887764443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=2e-06  Score=71.98  Aligned_cols=118  Identities=16%  Similarity=0.146  Sum_probs=64.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |..+..-+++.||||+|||+++..+|..+.   -++++++.......               +...+...+...+ ....
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~---~~~~~i~~~~l~~~---------------~~g~~~~~l~~~f-~~A~  101 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSDFVEM---------------FVGVGASRVRDMF-EQAK  101 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEECSCSSTTS---------------CCCCCHHHHHHHH-HHHH
T ss_pred             CCCCCCeEEeeCCCCCCccHHHHHHHHHcC---CCEEEEEhHHhhhc---------------chhHHHHHHHHHH-HHHH
Confidence            455556789999999999999999997663   45666665433221               1112223333333 3334


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                      ...+.+++||.+..+.+....... +..  ....+.+...+..+..+....++-||+++.
T Consensus       102 ~~~P~il~iDeiD~l~~~r~~~~~-~~~--~~~~~~~~~ll~~~d~~~~~~~v~vIatTn  158 (256)
T d1lv7a_         102 KAAPCIIFIDEIDAVGRQRGAGLG-GGH--DEREQTLNQMLVEMDGFEGNEGIIVIAATN  158 (256)
T ss_dssp             TTCSEEEEETTHHHHTCCCSTTSC-CTT--CHHHHHHHHHHHHHHTCCSSSCEEEEEEES
T ss_pred             HcCCEEEEEEChhhhCccCCCCCC-CCc--HHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence            578899999999877643221111 111  122234445555553333344555665544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.34  E-value=6e-06  Score=66.72  Aligned_cols=90  Identities=19%  Similarity=0.187  Sum_probs=59.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      ++.++.++||+|+||||.+--+|..+...+.+|.+++......      +.+++.+++.+...  ....+..+.......
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~--~~~~d~~~~~~~~~~   82 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQG--PEGTDPAALAYDAVQ   82 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECC--CTTCCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEec--cCCccHHHHHHHHHH
Confidence            5789999999999999999999988887777899888654322      24566667654221  122344444433322


Q ss_pred             HHhcCCccEEEEcchhhh
Q 024152          192 LIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       192 l~~~~~~~lvvID~l~~~  209 (271)
                      .....+.++|+||.....
T Consensus        83 ~~~~~~~d~ilIDTaGr~  100 (207)
T d1okkd2          83 AMKARGYDLLFVDTAGRL  100 (207)
T ss_dssp             HHHHHTCSEEEECCCCCC
T ss_pred             HHHHCCCCEEEcCccccc
Confidence            233346899999986543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.27  E-value=6.5e-06  Score=66.55  Aligned_cols=92  Identities=23%  Similarity=0.273  Sum_probs=63.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      .....++.++||+|+||||++-.+|..+...+.+|.+++.+....      +.+++.++++...  .....+..++...+
T Consensus         7 ~~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~--~~~~~~~~~~~~~~   84 (207)
T d1ls1a2           7 LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE--VMDGESPESIRRRV   84 (207)
T ss_dssp             CCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE--CCTTCCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCcccc--ccccchhhHHHHHH
Confidence            346679999999999999999999998888878899888754332      1356666665432  22334555555544


Q ss_pred             HHHHhcCCccEEEEcchhhh
Q 024152          190 DTLIRSGSVDVVVVDSVAAL  209 (271)
Q Consensus       190 ~~l~~~~~~~lvvID~l~~~  209 (271)
                      ..+....+.++|+||.....
T Consensus        85 ~~~~~~~~~d~vlIDTaGr~  104 (207)
T d1ls1a2          85 EEKARLEARDLILVDTAGRL  104 (207)
T ss_dssp             HHHHHHHTCCEEEEECCCCS
T ss_pred             HHHHhhccCcceeecccccc
Confidence            44444457899999986543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=8.8e-06  Score=65.86  Aligned_cols=87  Identities=13%  Similarity=0.124  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDTL  192 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l  192 (271)
                      -.++.++||+|+||||.+--+|..+...+.+|.+++......      +.+++.++++...  .....+..+++..+...
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~--~~~~~d~~~~l~~~~~~   86 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIA--QHTGADSASVIFDAIQA   86 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEEC--CSTTCCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccc--cccCCCHHHHHHHHHHH
Confidence            458999999999999999999988887777889888654322      1456667766432  12233444444433333


Q ss_pred             HhcCCccEEEEcchh
Q 024152          193 IRSGSVDVVVVDSVA  207 (271)
Q Consensus       193 ~~~~~~~lvvID~l~  207 (271)
                      ....+.++|+||...
T Consensus        87 a~~~~~d~ilIDTaG  101 (211)
T d2qy9a2          87 AKARNIDVLIADTAG  101 (211)
T ss_dssp             HHHTTCSEEEECCCC
T ss_pred             HHHcCCCEEEeccCC
Confidence            334678999999854

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=2.9e-06  Score=71.23  Aligned_cols=122  Identities=20%  Similarity=0.215  Sum_probs=65.5

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      .|+++..-++|.||||+|||+|+..+|..+.   -++++++.     ..+.   +        ......++.+..+-...
T Consensus        36 ~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~---~~~~~~~~-----~~l~---~--------~~~~~~~~~l~~~f~~A   96 (265)
T d1r7ra3          36 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG-----PELL---T--------MWFGESEANVREIFDKA   96 (265)
T ss_dssp             CCCCCCCEEEEBCCTTSSHHHHHHHHHHHTT---CEEEEECH-----HHHH---T--------SCTTTHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEECCCCCcchhHHHHHHHHhC---CcEEEEEH-----HHhh---h--------ccccchHHHHHHHHHHH
Confidence            4788888899999999999999999988763   34555531     1111   1        01112233333322223


Q ss_pred             hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      ....+.+++||.+..+........  ++ ......+.+...+..+..+....++.||++++.-.
T Consensus        97 ~~~~p~il~ideid~l~~~~~~~~--~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~  157 (265)
T d1r7ra3          97 RQAAPCVLFFDELDSIAKARGGNI--GD-GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD  157 (265)
T ss_dssp             HHTCSEEEEESSGGGTCCHHHHCC--CT-THHHHHHHHHHHHHTCC------CCEEEECCBSCT
T ss_pred             HhcCCcceeHHhhhhccccCCCcC--CC-CcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCch
Confidence            456789999999987764111000  11 11122233444455554444556777777765443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.14  E-value=3.7e-06  Score=69.91  Aligned_cols=118  Identities=18%  Similarity=0.147  Sum_probs=61.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+....-+++.||||+|||++++.++...   +-++++++..     .+...           ..-..+..+..+-....
T Consensus        38 g~~~~~giLl~GppGtGKT~la~aia~~~---~~~~~~i~~~-----~l~~~-----------~~g~~~~~l~~~f~~a~   98 (247)
T d1ixza_          38 GARIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGS-----DFVEM-----------FVGVGAARVRDLFETAK   98 (247)
T ss_dssp             TCCCCSEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH-----HHHHS-----------CTTHHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEecCCCCChhHHHHHHHHHc---CCCEEEEEhH-----Hhhhc-----------cccHHHHHHHHHHHHHH
Confidence            45555568999999999999999999754   3456666421     11110           01112233333333334


Q ss_pred             cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152          195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                      ...+.+++||.+-.+........ .+.  .....+.++..+..+..+....++-||+++.
T Consensus        99 ~~~p~Ii~iDeid~l~~~r~~~~-~~~--~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn  155 (247)
T d1ixza_          99 RHAPCIVFIDEIDAVGRKRGSGV-GGG--NDEREQTLNQLLVEMDGFEKDTAIVVMAATN  155 (247)
T ss_dssp             TSSSEEEEEETHHHHHC------------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEES
T ss_pred             HcCCEEEEEEChhhhCccCCCCC-CCC--cHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence            56788999999987764211110 011  1122334555555554333344555555543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.12  E-value=2.2e-05  Score=63.52  Aligned_cols=89  Identities=17%  Similarity=0.127  Sum_probs=59.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      +..++.++||+|+||||.+-.+|..+...+.+|.+++......      +.+++.+++.+..  ..+..+...+......
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~--~~~~~d~~~~~~~~~~   87 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVIS--HSEGADPAAVAFDAVA   87 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEEC--CSTTCCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccc--cCCCCcHHHHHHHHHH
Confidence            5568999999999999999999988877777899887654322      1345566655421  1222344444444443


Q ss_pred             HHhcCCccEEEEcchhh
Q 024152          192 LIRSGSVDVVVVDSVAA  208 (271)
Q Consensus       192 l~~~~~~~lvvID~l~~  208 (271)
                      .....+.++|+||....
T Consensus        88 ~~~~~~~d~ilIDTaGr  104 (213)
T d1vmaa2          88 HALARNKDVVIIDTAGR  104 (213)
T ss_dssp             HHHHTTCSEEEEEECCC
T ss_pred             HHHHcCCCEEEEecccc
Confidence            44446789999998643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.02  E-value=4.9e-05  Score=61.38  Aligned_cols=88  Identities=17%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      ...++.++||+|+||||++--+|..+...+.+|.+++......      +.++..+++.+..  .....+..+....+-.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~--~~~~~~~~~~~~~a~~   88 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--EPGEKDVVGIAKRGVE   88 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEEC--CTTCCCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceee--cccchhhhHHHHHHHH
Confidence            4568999999999999999999988877777899988654332      2345566665421  1222333333333222


Q ss_pred             HHhcCCccEEEEcchh
Q 024152          192 LIRSGSVDVVVVDSVA  207 (271)
Q Consensus       192 l~~~~~~~lvvID~l~  207 (271)
                      .....+.++|+||...
T Consensus        89 ~~~~~~~d~IlIDTaG  104 (211)
T d1j8yf2          89 KFLSEKMEIIIVDTAG  104 (211)
T ss_dssp             HHHHTTCSEEEEECCC
T ss_pred             HhhccCCceEEEecCC
Confidence            2334578999999754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=3.2e-05  Score=61.26  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      -+++++|.||+||||++..++......+.++..++
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~   37 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   37 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEc
Confidence            37999999999999999999988776666666665

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=3.1e-06  Score=64.98  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +++|+|+||||||||+..++..+...+.++.++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~   37 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   37 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEec
Confidence            7999999999999999999999988877766654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4.9e-06  Score=64.30  Aligned_cols=35  Identities=29%  Similarity=0.192  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      ..+.|.||||+|||||+..++..+...+..+.++.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            35899999999999999999999988777665554

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.86  E-value=1.8e-05  Score=67.92  Aligned_cols=130  Identities=15%  Similarity=0.070  Sum_probs=69.7

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecC
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQ  178 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~  178 (271)
                      +.+--.+.+...++  .-.+..++++.||||+|||.+++.+|..+...-.. +.++......             .+.+ 
T Consensus       105 ~~~~~~~~~~~~~~--~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~-~~~~~~~~~~-------------~~~G-  167 (321)
T d1w44a_         105 ELVGCSPVVAEFGG--HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKY-ATVRFGEPLS-------------GYNT-  167 (321)
T ss_dssp             TCCSBCCEEEEETT--EEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCC-EEEEBSCSST-------------TCBC-
T ss_pred             cccccchHHHHHhh--cccCCceEEEECCCCccHHHHHHHHHHHhcCCCCe-EEEEhhHhhh-------------cccc-
Confidence            33333455555554  34455577779999999999999999987532221 2233222221             0111 


Q ss_pred             CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152          179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       179 ~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                       .....+...++...   .+..++||.+..+.+...-..     ......+.+.+.+..+..+....++-||+.+-
T Consensus       168 -~~e~~~~~~f~~a~---~~~ilf~DEid~~~~~r~~~~-----~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN  234 (321)
T d1w44a_         168 -DFNVFVDDIARAML---QHRVIVIDSLKNVIGAAGGNT-----TSGGISRGAFDLLSDIGAMAASRGCVVIASLN  234 (321)
T ss_dssp             -CHHHHHHHHHHHHH---HCSEEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             -hHHHHHHHHHHHHh---hccEEEeehhhhhccccccCC-----CCCcchhhhhhhhhhccccccCCCeEEEEeCC
Confidence             12233333333332   256999999988864322111     11122245566666666666667888887764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=2.5e-05  Score=64.99  Aligned_cols=78  Identities=22%  Similarity=0.385  Sum_probs=47.6

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      |+++..-++|.||||+|||+++..++....   .++++++......                ...-..+..+..+-....
T Consensus        34 g~~~~~giLL~GppGtGKT~l~~ala~~~~---~~~~~i~~~~l~~----------------~~~g~~~~~l~~~f~~A~   94 (258)
T d1e32a2          34 GVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIMS----------------KLAGESESNLRKAFEEAE   94 (258)
T ss_dssp             CCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CEEEEECHHHHTT----------------SCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCceeEEecCCCCCchHHHHHHHHHhC---CeEEEEEchhhcc----------------cccccHHHHHHHHHHHHH
Confidence            666666699999999999999998887543   3455554211000                000111222222222334


Q ss_pred             cCCccEEEEcchhhhcC
Q 024152          195 SGSVDVVVVDSVAALVP  211 (271)
Q Consensus       195 ~~~~~lvvID~l~~~~~  211 (271)
                      ...+.++++|.+..+.+
T Consensus        95 ~~~p~il~iDeid~l~~  111 (258)
T d1e32a2          95 KNAPAIIFIDELDAIAP  111 (258)
T ss_dssp             HTCSEEEEESSGGGTCC
T ss_pred             hcCCeEEEehhhhhhcc
Confidence            56799999999988764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.78  E-value=1.2e-05  Score=61.98  Aligned_cols=35  Identities=34%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .+++|+|.+|||||||+..++..+...+.+|..+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik   36 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   36 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            37899999999999999999999998887777764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=8.8e-06  Score=63.87  Aligned_cols=39  Identities=28%  Similarity=0.435  Sum_probs=31.4

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      +|+ +|.+|.|.|+|||||||++..++..+........++
T Consensus        15 ~~~-~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~   53 (195)
T d1x6va3          15 GGF-RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL   53 (195)
T ss_dssp             CSC-CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCC-CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccch
Confidence            356 788999999999999999999999887655444443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.72  E-value=7.1e-05  Score=60.42  Aligned_cols=103  Identities=20%  Similarity=0.280  Sum_probs=63.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEE
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVV  201 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lv  201 (271)
                      +.|.|++|+|||-|+..++......+..++|++....... ....+          ......+....    .  ...+++
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~----~--~~~dll  101 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA-MVEHL----------KKGTINEFRNM----Y--KSVDLL  101 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHHHH----------HHTCHHHHHHH----H--HTCSEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH-HHHHH----------HccchhhHHHH----H--hhccch
Confidence            6799999999999999999998877778888864321111 11000          00112222222    1  268999


Q ss_pred             EEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152          202 VVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS  257 (271)
Q Consensus       202 vID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~  257 (271)
                      +||.+..+..         ..   ..+.++-    .+...+.+.+.++|+++...-
T Consensus       102 ~iDDi~~i~~---------~~---~~~~~lf----~lin~~~~~~~~iiits~~~p  141 (213)
T d1l8qa2         102 LLDDVQFLSG---------KE---RTQIEFF----HIFNTLYLLEKQIILASDRHP  141 (213)
T ss_dssp             EEECGGGGTT---------CH---HHHHHHH----HHHHHHHHTTCEEEEEESSCG
T ss_pred             hhhhhhhhcC---------ch---HHHHHHH----HHHHHHhhccceEEEecCCcc
Confidence            9999988762         11   1122233    334445688999999987653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=0.00013  Score=59.54  Aligned_cols=43  Identities=30%  Similarity=0.231  Sum_probs=31.8

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD  160 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~  160 (271)
                      |..+...++|.||||+||||++..+|....   ..+.+++......
T Consensus        48 ~~~~~~~lll~GPpG~GKTt~a~~la~~~~---~~~~~~~~~~~~~   90 (253)
T d1sxja2          48 GSGVFRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNASDVRS   90 (253)
T ss_dssp             STTSCSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECTTSCCC
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHHH---hhhhccccccchh
Confidence            344556899999999999999999987543   4566676554444

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.68  E-value=1.6e-05  Score=61.10  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=27.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQG  147 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~  147 (271)
                      .+|.+|.|.|.|||||||++..++..+....
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~   34 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQG   34 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            4799999999999999999999998876544

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.66  E-value=2e-05  Score=60.98  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +.+|+|.|+|||||||++..++..+...+.++.+++
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   36 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS   36 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEe
Confidence            368999999999999999999998877666555543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.7e-05  Score=60.88  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=24.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +.+.+++|.|+|||||||++..++..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999998876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.62  E-value=0.00045  Score=56.21  Aligned_cols=38  Identities=16%  Similarity=0.138  Sum_probs=29.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcCC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAE  156 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~e  156 (271)
                      ...+.|.||||+|||++++.++..+....+ .++++...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~   81 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF   81 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecch
Confidence            347889999999999999999998876544 44555443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.60  E-value=0.00013  Score=60.19  Aligned_cols=75  Identities=27%  Similarity=0.270  Sum_probs=42.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCc
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV  198 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~  198 (271)
                      -.-++|.||||+|||+++..+|....   .+++.++.....       .|+.        ..+..+.+..+-....+..+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~~~~~-------~g~~--------~~~~~~~i~~if~~A~~~~p  101 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESN---FPFIKICSPDKM-------IGFS--------ETAKCQAMKKIFDDAYKSQL  101 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHT---CSEEEEECGGGC-------TTCC--------HHHHHHHHHHHHHHHHTSSE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccc---cccccccccccc-------cccc--------ccchhhhhhhhhhhhhhccc
Confidence            34588999999999999999987643   344444321100       0100        00111222222222334568


Q ss_pred             cEEEEcchhhhcC
Q 024152          199 DVVVVDSVAALVP  211 (271)
Q Consensus       199 ~lvvID~l~~~~~  211 (271)
                      .+++||.+..+.+
T Consensus       102 ~il~iDEid~l~~  114 (246)
T d1d2na_         102 SCVVVDDIERLLD  114 (246)
T ss_dssp             EEEEECCHHHHTT
T ss_pred             ceeehhhhhhHhh
Confidence            8999999987754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.58  E-value=1.6e-05  Score=61.20  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .|.++.|.|+|||||||++..++..   .+.++++++.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~---lg~~~~~~~~   37 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHS   37 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH---hCCCEEEecH
Confidence            4889999999999999999877643   2335566654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.58  E-value=2.3e-05  Score=60.19  Aligned_cols=27  Identities=41%  Similarity=0.561  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      |+|-.|+|.|+||+||||++..++..+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            678899999999999999999988754

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.58  E-value=4.1e-05  Score=64.25  Aligned_cols=55  Identities=27%  Similarity=0.508  Sum_probs=46.0

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEc
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFID  154 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~  154 (271)
                      -+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+.+++.+...... -++|..
T Consensus        49 ~~~l~TGIraID~l~p---igkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~  104 (276)
T d2jdid3          49 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  104 (276)
T ss_dssp             CCEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEE
T ss_pred             CcccccCceeeeeecc---ccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEE
Confidence            3678999999999985   669999999999999999999999999775543 445543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.56  E-value=3.7e-05  Score=60.10  Aligned_cols=34  Identities=35%  Similarity=0.353  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +|+|.|++|||||||+..++......+-.+..++
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~   57 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccccccceecc
Confidence            6789999999999999999988877655555554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00071  Score=55.16  Aligned_cols=27  Identities=30%  Similarity=0.384  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .+.+++|.|||.+||||++++++.++.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~~   66 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIAL   66 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHHH
Confidence            357899999999999999999988765

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=8.8e-05  Score=59.49  Aligned_cols=87  Identities=16%  Similarity=0.062  Sum_probs=47.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHH-HHHHcCCcCCcceec-----CCCCHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS-LAETIGVKTENLLLA-----QPDCGEQALSLVDTLIR  194 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~-~~~~~g~~~~~~~~~-----~~~~~~e~~~~~~~l~~  194 (271)
                      -+++.||||+||||+++.++..+....+..   ......... ..-.-+..++-....     .....++++.....+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ir~l~~~~~~  102 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLLCQQPQG---HKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE  102 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCSSCBT---TBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHHhcccccccc---cccccccchhhhhhhccccccchhhhhhcccccccchhhHHhhhhhh
Confidence            489999999999999999998776332210   000011111 111112222211111     12345666665554321


Q ss_pred             ---cCCccEEEEcchhhhc
Q 024152          195 ---SGSVDVVVVDSVAALV  210 (271)
Q Consensus       195 ---~~~~~lvvID~l~~~~  210 (271)
                         ..+.++++||.+..+.
T Consensus       103 ~~~~~~~kviIide~d~l~  121 (207)
T d1a5ta2         103 HARLGGAKVVWVTDAALLT  121 (207)
T ss_dssp             CCTTSSCEEEEESCGGGBC
T ss_pred             ccccCccceEEechhhhhh
Confidence               2356799999988775

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.53  E-value=2.3e-05  Score=59.02  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .+++|+|+|||||||++..++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999987654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.52  E-value=2.6e-05  Score=59.47  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+++|.|+||+||||++..++...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999888654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=97.46  E-value=0.0003  Score=52.76  Aligned_cols=113  Identities=12%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG  196 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~  196 (271)
                      |.+..|.||=.|||||-++..+.+....+.+|+++......+.  ....+.|.......+   .+..+++..........
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~~~i~s~~g~~~~~~~~---~~~~~~~~~~~~~~~~~   78 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV---ESAPEILNYIMSNSFND   78 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE---SSTHHHHHHHHSTTSCT
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccccccceEEcccCceeeeEEe---ccchhhHHHHHhhcccc
Confidence            7899999999999999888888888877778887764322211  111222222222222   23345555443322224


Q ss_pred             CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          197 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       197 ~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      ..+.|.||..|.+.+                  .+..    +...+.+.|++|++..=..
T Consensus        79 ~~dvI~IDE~QFf~d------------------~i~~----~~~~~~~~g~~Viv~GLd~  116 (139)
T d2b8ta1          79 ETKVIGIDEVQFFDD------------------RICE----VANILAENGFVVIISGLDK  116 (139)
T ss_dssp             TCCEEEECSGGGSCT------------------HHHH----HHHHHHHTTCEEEEECCSB
T ss_pred             CcCEEEechhhhcch------------------hHHH----HHHHHHhcCceEEEEEecc
Confidence            688999999998742                  1112    2333457799988875433

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.44  E-value=3.6e-05  Score=58.79  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .|+|.|+|||||||++..++...
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998765

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.43  E-value=0.00019  Score=52.45  Aligned_cols=40  Identities=25%  Similarity=0.216  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHH-HHHHhhcCCeEEEEcC
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHV-IAEAQRQGGYCVFIDA  155 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~i-a~~~~~~~g~v~~~~~  155 (271)
                      +.+|+.++|.+|+|+|||..+... .......+..++++..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p   44 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAP   44 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeec
Confidence            458999999999999999776544 3444445556666653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00023  Score=58.05  Aligned_cols=28  Identities=18%  Similarity=0.178  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQ  146 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~  146 (271)
                      ...++|.||||+||||+++.++..+...
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            3468899999999999999999877643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.41  E-value=4.7e-05  Score=58.21  Aligned_cols=25  Identities=16%  Similarity=0.294  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..+|.|.|+|||||||+++.++..+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            5689999999999999999988765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=97.40  E-value=9.2e-05  Score=62.12  Aligned_cols=55  Identities=29%  Similarity=0.454  Sum_probs=44.6

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+..++.+...+...++|..
T Consensus        48 ~~~l~TGi~~ID~l~p---ig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~  102 (276)
T d1fx0a3          48 YEPLQTGLIAIDAMIP---VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVA  102 (276)
T ss_dssp             CSBCCCSCTTTTTTSC---CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred             CccccccceEEecccc---ccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeee
Confidence            4578999999999985   669999999999999999999987766555555555543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.39  E-value=4.1e-05  Score=58.86  Aligned_cols=25  Identities=36%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -..|+|.|+||+|||||+..++...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999988754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.37  E-value=4e-05  Score=63.12  Aligned_cols=34  Identities=32%  Similarity=0.447  Sum_probs=26.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      ....++|+||||+|||||+..++....   ...+.++
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~---~~~~~i~   64 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVID   64 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEEC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh---cceEEEe
Confidence            445699999999999999999998764   2345554

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.36  E-value=0.00012  Score=59.46  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++++|.|||.+||||++++++.+.-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~i   60 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIAL   60 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHHHH
Confidence            5899999999999999999988764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.35  E-value=9.4e-05  Score=57.19  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=28.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .+++|.|+||+||||++..++..+...+-.+..++
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~   36 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            37889999999999999999998876665655554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=4.7e-05  Score=59.33  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVI  140 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia  140 (271)
                      ++-.+++++|+||||||||+..++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            466799999999999999998764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.33  E-value=7.6e-05  Score=58.52  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      |+|--++|.|||||||||.+..++...
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            577788899999999999999998765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00018  Score=60.51  Aligned_cols=47  Identities=21%  Similarity=0.220  Sum_probs=40.6

Q ss_pred             ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152           99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG  148 (271)
Q Consensus        99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g  148 (271)
                      ..++|...+|.++.   +-+|+-.+|.|++|+|||+|+.+++.+...+..
T Consensus        26 ~~~~~~r~ID~l~P---igrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~   72 (289)
T d1xpua3          26 TEDLTARVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP   72 (289)
T ss_dssp             STHHHHHHHHHHSC---CBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCT
T ss_pred             cccccceeeeeccc---ccCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCC
Confidence            34577899999986   669999999999999999999999999876543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=5.2e-05  Score=57.00  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .|.|.|+||+||||+++.++..+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47788999999999999999865

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.0014  Score=48.47  Aligned_cols=84  Identities=20%  Similarity=0.156  Sum_probs=50.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhc
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS  195 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~  195 (271)
                      +|.+..|+||=.|||||-++..+.+....+.+|+++........  ......+..........   ..+....   .   
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~R~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~---   71 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACL---LRDVAQE---A---   71 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCC--------------CEEESS---GGGGHHH---H---
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccccCCcceeeecCCCcceeeeeec---hhhhhhh---h---
Confidence            58999999999999999999999988877777888764333221  11111111111122211   1122111   1   


Q ss_pred             CCccEEEEcchhhhc
Q 024152          196 GSVDVVVVDSVAALV  210 (271)
Q Consensus       196 ~~~~lvvID~l~~~~  210 (271)
                      .+.+.|.||..|.+.
T Consensus        72 ~~~d~I~IDEaQFf~   86 (133)
T d1xbta1          72 LGVAVIGIDEGQFFP   86 (133)
T ss_dssp             HTCSEEEESSGGGCT
T ss_pred             cccceEEeehhHHHH
Confidence            257899999999884

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.30  E-value=7.7e-05  Score=58.65  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +..+|.|.|||||||||++..++...
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998755

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=6.7e-05  Score=60.92  Aligned_cols=24  Identities=46%  Similarity=0.513  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      -++++||||+||||+++.++..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            378999999999999999988764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.27  E-value=8.1e-05  Score=58.10  Aligned_cols=26  Identities=38%  Similarity=0.563  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      |.+++|+||||+||||++..+.....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999998876653

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=0.0023  Score=50.59  Aligned_cols=73  Identities=16%  Similarity=0.104  Sum_probs=49.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC---eEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGG---YCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR  194 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g---~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~  194 (271)
                      .+.-+++.|+||+|||+++..++........   .++++..+.                    ....+++++.....+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~--------------------~~I~Id~IR~i~~~~~~   73 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGIDDIRTIKDFLNY   73 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHHHHHHHHHHHTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCc--------------------CCCCHHHHHHHHHHHhh
Confidence            4668999999999999999999987653221   355554321                    11356777776555432


Q ss_pred             ---cCCccEEEEcchhhhc
Q 024152          195 ---SGSVDVVVVDSVAALV  210 (271)
Q Consensus       195 ---~~~~~lvvID~l~~~~  210 (271)
                         ..+.++++||....|.
T Consensus        74 ~~~~~~~KviIId~ad~l~   92 (198)
T d2gnoa2          74 SPELYTRKYVIVHDCERMT   92 (198)
T ss_dssp             CCSSSSSEEEEETTGGGBC
T ss_pred             CcccCCCEEEEEeCccccc
Confidence               2456799999988775

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.21  E-value=0.00014  Score=63.34  Aligned_cols=45  Identities=31%  Similarity=0.384  Sum_probs=35.9

Q ss_pred             HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      |-.++.  |.|++..+++.||||+|||+|++.++..+.   ++++.++..
T Consensus       144 l~~~~~--~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s  188 (362)
T d1svma_         144 LKCMVY--NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLP  188 (362)
T ss_dssp             HHHHHH--CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSC
T ss_pred             HHHHHh--CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECc
Confidence            444566  899999999999999999999999998764   455555433

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00024  Score=60.95  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      +.-.++|.|+||+|||||...++......+.+|.++..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlav   90 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV   90 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecC
Confidence            68899999999999999999999988877777666543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=9.7e-05  Score=60.04  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +++.||||+||||+++.++....
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67999999999999999998764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00027  Score=60.09  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEcCCC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEH  157 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~--~g~v~~~~~e~  157 (271)
                      -=+++|+|++|+|||||+..+...+...  +.+|..++...
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~  120 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeee
Confidence            3499999999999999999999888743  34677776543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.17  E-value=0.00046  Score=56.48  Aligned_cols=86  Identities=16%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh----cCC--eEEEEcCCCCCCH-----HHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQR----QGG--YCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQALSLV  189 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~----~~g--~v~~~~~e~~~~~-----~~~~~~g~~~~~~~~~~~~~~~e~~~~~  189 (271)
                      ++.|.||||+|||++++.++..+..    ...  .+.++........     ......+...    .........+...+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l  123 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPI----QVRGAPALDILKAL  123 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCC----CCTTCCHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchhhHHHHHhhhccccc----ccccchHHHHHHHH
Confidence            4566799999999999999987653    222  3444443322222     1122222221    11223344444333


Q ss_pred             HHHH-hcCCccEEEEcchhhhc
Q 024152          190 DTLI-RSGSVDVVVVDSVAALV  210 (271)
Q Consensus       190 ~~l~-~~~~~~lvvID~l~~~~  210 (271)
                      .... .......+++|.+..+.
T Consensus       124 ~~~~~~~~~~~~~iide~d~l~  145 (287)
T d1w5sa2         124 VDNLYVENHYLLVILDEFQSML  145 (287)
T ss_dssp             HHHHHHHTCEEEEEEESTHHHH
T ss_pred             HHHHHhccCccccceeEEEEec
Confidence            3332 34456677888887765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.13  E-value=9.3e-05  Score=58.30  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+.++.|.|||||||||.+..++...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            77899999999999999999887643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.12  E-value=0.00013  Score=56.36  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -|+|.|+|||||||.+..++...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999988765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.11  E-value=0.00029  Score=56.73  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +++|.|++|+|||||+..+..... .++.+..++
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn   34 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN   34 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEe
Confidence            689999999999999999987654 344556554

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.10  E-value=0.0013  Score=54.61  Aligned_cols=39  Identities=15%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEcCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAE  156 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~----~~g~v~~~~~e  156 (271)
                      ...++.|.|..|.||||||..+......    ....++|++..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs   85 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS   85 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEec
Confidence            4669999999999999999998875331    23457787643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.10  E-value=0.0002  Score=57.40  Aligned_cols=39  Identities=28%  Similarity=0.332  Sum_probs=31.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDA  155 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~  155 (271)
                      ++|.+|-|.|.||+||||++..++..+... +-.++++++
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg   61 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG   61 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc
Confidence            588999999999999999999998876543 335666653

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00016  Score=56.74  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +|.|.|||||||||.|..++...
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998765

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00032  Score=56.13  Aligned_cols=39  Identities=15%  Similarity=0.303  Sum_probs=33.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .+|-+|.|.|+.|+||||++..++..+...+-+|+++..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~   39 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF   39 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            378899999999999999999999988877777777653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.00016  Score=56.81  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++-.++.|.|||||||||++..++...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            355689999999999999999998754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00016  Score=57.58  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +|+|.|||||||||.+..|+..+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            899999999999999999998774

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.07  E-value=0.00015  Score=56.74  Aligned_cols=23  Identities=35%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .+.|.|||||||||+|..++...
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999888765

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.03  E-value=0.0014  Score=49.05  Aligned_cols=86  Identities=20%  Similarity=0.243  Sum_probs=53.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH---HHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP---SLAETIGVKTENLLLAQPDCGEQALSLVDTLI  193 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~---~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~  193 (271)
                      +.|.+.+|+||=.|||||-++..+.+....+.+|+++......+.   ....+.|...+.....   +..++...    .
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~---~~~~~~~~----~   77 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIK---NSREILKY----F   77 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEES---SSTHHHHH----C
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccccccceeeecccceEEEEEec---chhhhhhh----h
Confidence            379999999999999999999999988887778888764322110   1112222222222222   22233221    1


Q ss_pred             hcCCccEEEEcchhhhc
Q 024152          194 RSGSVDVVVVDSVAALV  210 (271)
Q Consensus       194 ~~~~~~lvvID~l~~~~  210 (271)
                       ....+.|.||..|.+.
T Consensus        78 -~~~~dvI~IDE~QFf~   93 (141)
T d1xx6a1          78 -EEDTEVIAIDEVQFFD   93 (141)
T ss_dssp             -CTTCSEEEECSGGGSC
T ss_pred             -cccccEEEEeehhhcc
Confidence             2468999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.03  E-value=0.00017  Score=61.36  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=23.1

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +.+++ -++++||||+|||.||+.+|..+.
T Consensus        46 ~~~~~-~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          46 EVTPK-NILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             HCCCC-CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCc-eEEEECCCCCCHHHHHHHHhhccc
Confidence            34454 556899999999999999998753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.03  E-value=0.00043  Score=59.26  Aligned_cols=37  Identities=19%  Similarity=0.125  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      +.-.++|.|+||+|||||...++......+.+|.++.
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaVia   86 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA   86 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeee
Confidence            6778999999999999999999988776666655543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00018  Score=55.82  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -|+|.|+|||||||.+..++...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999776

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0003  Score=55.98  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      +|.+|+|.|+.||||||++..++..+...+-.++++
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~   36 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF   36 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            588999999999999999999998887665443433

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.01  E-value=0.00019  Score=55.80  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .|+|.|+|||||||.+..++...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00019  Score=57.24  Aligned_cols=35  Identities=17%  Similarity=0.346  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDA  155 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~  155 (271)
                      +|+|.|++|||||||+..++..+...     ...+.+++.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~   43 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQ   43 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEec
Confidence            68999999999999999998876532     224556654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.93  E-value=0.00026  Score=56.47  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +|+|.|||||||||.|..|+..+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            577889999999999999998774

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.93  E-value=0.00025  Score=54.15  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      |+|.|+||+||||++..+|..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6778999999999999999877

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00026  Score=54.97  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|.|+|||||||++..++...
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999998764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.91  E-value=0.00024  Score=55.91  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .--++|.|+|||||||++..++...
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            3457889999999999999988754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.91  E-value=0.00026  Score=54.47  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +.|+|.|+|||||||++..+|..+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            3467889999999999999987663

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.90  E-value=0.00025  Score=57.12  Aligned_cols=25  Identities=36%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      .++|.||||+||||+++.++..+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHh
Confidence            4789999999999999999987653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00028  Score=54.57  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .++|.|+|||||||.+..++...
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=0.00031  Score=53.67  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++|.|+||+||||+++.++..+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45669999999999999987763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00039  Score=55.55  Aligned_cols=26  Identities=19%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .|.+++|+||+|+|||||+..++...
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999999877654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.81  E-value=0.00061  Score=52.80  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~  141 (271)
                      ++|+|+|.+|||||++.+++
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999998874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.80  E-value=0.00023  Score=59.87  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      +|+|+|++|||||||+..+...+...+-++++++..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            899999999999999999998888776666777654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0043  Score=51.37  Aligned_cols=112  Identities=15%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcC-------CeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQG-------GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT  191 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~-------g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~  191 (271)
                      ..-++|+|+||+|||+++..++..+....       ..++.++......       |.       ...-..++.+..+..
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~lia-------g~-------~~~g~~e~r~~~i~~  104 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-------GT-------KYRGDFEKRFKALLK  104 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-------CC-------CCSSCHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhc-------cC-------ccchhHHHHHHHHHH
Confidence            34678999999999999999998877421       2222222211100       10       012234554443333


Q ss_pred             HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152          192 LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF  256 (271)
Q Consensus       192 l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~  256 (271)
                      .....+-.+++||.+..+.....-++  +..          .....|+.....-++.+|..+-..
T Consensus       105 ~~~~~~~iIlfiDeih~l~~~g~~~g--~~~----------d~a~~Lkp~L~rg~i~vIgatT~e  157 (268)
T d1r6bx2         105 QLEQDTNSILFIDEIHTIIGAGAASG--GQV----------DAANLIKPLLSSGKIRVIGSTTYQ  157 (268)
T ss_dssp             HHSSSSCEEEEETTTTTTTTSCCSSS--CHH----------HHHHHHSSCSSSCCCEEEEEECHH
T ss_pred             HhhccCCceEEecchHHHhcCCCCCC--ccc----------cHHHHhhHHHhCCCCeEEEeCCHH
Confidence            34345556888999988864222111  111          223333434556678888776543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.0014  Score=52.13  Aligned_cols=24  Identities=33%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      ++|+|.+++|||||+..+......
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~g~   29 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVAAA   29 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHhhh
Confidence            789999999999999999876553

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.73  E-value=0.00057  Score=57.35  Aligned_cols=45  Identities=27%  Similarity=0.382  Sum_probs=40.4

Q ss_pred             CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152           97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus        97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      -+.+.||+..+|.++.   +-+|+-++|.|++|+|||+|+..++.+..
T Consensus        49 ~e~l~TGIraID~l~p---ig~GQr~~If~~~g~GKt~ll~~~~~~~~   93 (285)
T d2jdia3          49 REPMQTGIKAVDSLVP---IGRGQRELIIGDRQTGKTSIAIDTIINQK   93 (285)
T ss_dssp             CSBCCCSCHHHHHHSC---CBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred             CcccccCceEEecccC---ccCCCEEEeecCCCCChHHHHHHHHHhHH
Confidence            3578999999999985   66999999999999999999999988765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00043  Score=55.64  Aligned_cols=23  Identities=35%  Similarity=0.576  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++|.||||+||||+++.++..+.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHHc
Confidence            78999999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.0007  Score=56.85  Aligned_cols=37  Identities=14%  Similarity=0.257  Sum_probs=28.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCC
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAE  156 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e  156 (271)
                      =+++|+|++|||||||+..+...+...   ...|.+++..
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~D   67 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID   67 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGG
T ss_pred             EEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccC
Confidence            488999999999999999887766432   2357777754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.68  E-value=0.00039  Score=54.40  Aligned_cols=20  Identities=20%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~  141 (271)
                      ++|+|+||+|||||++.+.+
T Consensus        26 I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          26 IALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHhcC
Confidence            99999999999999999985

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00048  Score=55.22  Aligned_cols=24  Identities=29%  Similarity=0.182  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      ++|.||||+||||+++.++..+..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCchhhHHHHHHHHhc
Confidence            789999999999999999987653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00039  Score=56.40  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++|.||||+||||+++.++..+.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhhc
Confidence            78999999999999999998864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.63  E-value=0.00089  Score=54.36  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=26.3

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +|+.+..  .  .+.++.|.|++|+|||+|+..++...
T Consensus        20 el~~l~~--~--~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          20 EIEKLKG--L--RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             HHHHHHH--T--CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHh--c--cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            4455544  2  45789999999999999999887654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.62  E-value=0.00057  Score=50.99  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|+||+|||||++.++..-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999988754

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=96.61  E-value=0.0031  Score=52.20  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             CCCCcEEEEEcCCCCcHHH-HHHHHHHHHhhcCCeEEEEcC
Q 024152          116 LPKGRVVEIYGPEASGKTT-LALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTt-l~~~ia~~~~~~~g~v~~~~~  155 (271)
                      +.+|+.++|.||+|+|||+ ++..++......+..++|+..
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~P   46 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAP   46 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEES
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEcc
Confidence            4589999999999999995 544555555556677888753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.00086  Score=54.27  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      .|++.|...+      +|..++++|++|+|||||++.+...
T Consensus        84 ~g~~~L~~~l------~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          84 MGIEELKEYL------KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             TTHHHHHHHH------SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hhHhhHHHHh------cCCeEEEECCCCCCHHHHHHhhcch
Confidence            5677888777      4789999999999999999988654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.57  E-value=0.0012  Score=51.80  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      +|+|.|..||||||++..+...+...+-+|.++..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~   36 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF   36 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec
Confidence            78999999999999999999888776667776643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.55  E-value=0.0007  Score=51.76  Aligned_cols=31  Identities=29%  Similarity=0.309  Sum_probs=27.5

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ  146 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~  146 (271)
                      .++|.++.|.|+=|+|||||++.++..+...
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            4589999999999999999999999887543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00067  Score=54.30  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++|.||||+||||++..++..+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            77999999999999999998765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.49  E-value=0.00063  Score=53.03  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVI  140 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia  140 (271)
                      -+++|+|++||||||++..+.
T Consensus         4 ~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            378899999999999998763

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0017  Score=53.51  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=35.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      ...++++.|.-|+||||++-+++..++..+.+|++++...
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4568888899999999999999999999888999999764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.47  E-value=0.0017  Score=51.85  Aligned_cols=38  Identities=26%  Similarity=0.511  Sum_probs=33.6

Q ss_pred             CcEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          119 GRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       119 G~li~I~-G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      |.+|.|+ +..|+||||++.+++..++..+.+|++++..
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            5677777 8899999999999999999888899999865

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.00091  Score=52.15  Aligned_cols=24  Identities=38%  Similarity=0.548  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .|+|+||||+||||++..++....
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            478999999999999999876643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.39  E-value=0.00049  Score=53.83  Aligned_cols=125  Identities=14%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHc----CCcCCcceec-CCCCHHHHHHHHHHHHhc
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETI----GVKTENLLLA-QPDCGEQALSLVDTLIRS  195 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~----g~~~~~~~~~-~~~~~~e~~~~~~~l~~~  195 (271)
                      +|.|.|...+|||.+|..++    ...++++|+-+-...+.++++++    .--+...... .+.+..+.+   ..  ..
T Consensus         1 iiLVtGGarSGKS~~AE~l~----~~~~~~~YiAT~~~~D~em~~RI~~Hr~rR~~~w~tiE~~~~l~~~l---~~--~~   71 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI----GDAPQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLI---TA--DL   71 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH----CSCSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTS---CT--TS
T ss_pred             CEEEECCCCccHHHHHHHHH----hcCCCcEEEEccCCCCHHHHHHHHHHHhcCcCCCEEecccccHHHHH---Hh--hc
Confidence            57999999999999998764    34567899876544443222111    1112222221 122222211   11  12


Q ss_pred             CCccEEEEcchhhhcCCCcc----CCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152          196 GSVDVVVVDSVAALVPKGEL----DGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ  254 (271)
Q Consensus       196 ~~~~lvvID~l~~~~~~~~l----~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq  254 (271)
                      ...+.+++|.++......-+    ...+.+.........+.+....|....+..+.++|++|-
T Consensus        72 ~~~~~vLlDclt~~l~N~l~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~ViVsn  134 (180)
T d1c9ka_          72 APDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTN  134 (180)
T ss_dssp             CTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred             CcccchhhhhhhHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            35678999998754321100    001111122222333444444554445566666666653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.00096  Score=52.27  Aligned_cols=23  Identities=35%  Similarity=0.567  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      |+|+||||+||||++..++....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999887654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0018  Score=50.87  Aligned_cols=35  Identities=17%  Similarity=0.148  Sum_probs=31.5

Q ss_pred             EEEEEcCC-CCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          121 VVEIYGPE-ASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       121 li~I~G~~-G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      -+-|.|.. |+||||++.+++..++..+.+|++|+.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            47789995 999999999999999999999999973

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0011  Score=49.31  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|+|++|||||++.+...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999998874

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.30  E-value=0.0018  Score=53.07  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=32.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      .|+|+|.-|+||||++.+++..++..+.+|+.+|..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            578999999999999999999999888899999865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.30  E-value=0.0011  Score=49.70  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|+||+|||||++.+...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.27  E-value=0.0026  Score=54.14  Aligned_cols=79  Identities=15%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCc
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV  198 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~  198 (271)
                      +.-++|+|+.|+|||||++.++..+.+ ..+++.+.......  +..  ....-.+......+..+++..   .+ +..+
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~-~~rivtiEd~~El~--l~~--~~~~~~~~~~~~~~~~~ll~~---~l-R~~p  236 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIV--FKH--HKNYTQLFFGGNITSADCLKS---CL-RMRP  236 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESSCCCC--CSS--CSSEEEEECBTTBCHHHHHHH---HT-TSCC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhccc-ccceeeccchhhhh--ccc--ccccceeccccchhHHHHHHH---Hh-ccCC
Confidence            455899999999999999988876654 44566664322211  000  000001111223344554433   22 3578


Q ss_pred             cEEEEcch
Q 024152          199 DVVVVDSV  206 (271)
Q Consensus       199 ~lvvID~l  206 (271)
                      +.+++..+
T Consensus       237 d~iivgEi  244 (323)
T d1g6oa_         237 DRIILGEL  244 (323)
T ss_dssp             SEEEESCC
T ss_pred             CcccCCcc
Confidence            88888775

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0019  Score=50.07  Aligned_cols=24  Identities=13%  Similarity=0.372  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ..+++|+||+|+|||||+..++..
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999887754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.08  E-value=0.013  Score=51.01  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=28.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      ++-+++|+||.|+||||++..+...+......++-+
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~ti  192 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV  192 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEe
Confidence            667999999999999999999988776544555444

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0035  Score=51.65  Aligned_cols=39  Identities=15%  Similarity=0.235  Sum_probs=35.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      -.++.+.|.-|+||||++.++|..++..+.+|++++.+.
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            348889999999999999999999999988999999763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.07  E-value=0.00042  Score=56.39  Aligned_cols=37  Identities=14%  Similarity=0.141  Sum_probs=28.0

Q ss_pred             cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .|++.|-..+      +|..++++|++|+|||||.+.+.....
T Consensus        86 ~gl~~L~~~l------~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          86 DSLADIIPHF------QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTCTTTGGGG------TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             hHHHHHHHhh------ccceEEEECCCCccHHHHHHhhccHhH
Confidence            4666666555      467889999999999999999887544

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.0014  Score=49.98  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .++|+|+||+|||||++.+++
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999875

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.02  E-value=0.0025  Score=50.40  Aligned_cols=39  Identities=28%  Similarity=0.321  Sum_probs=34.0

Q ss_pred             CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -+..|-..+.  |.|+-..+.|.|||++|||+|+..++..+
T Consensus        39 Fl~~l~~~l~--~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          39 FLGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            3466666787  89999999999999999999999988876

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.01  E-value=0.0013  Score=50.53  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      -|+|+|+|++|||||++.+.+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0019  Score=50.45  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      .++|+|+|++|||||++.+.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0019  Score=51.96  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      +++|.|.-|||||||++.++..  ..+.++.++-.|
T Consensus         5 v~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne   38 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENE   38 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEec
Confidence            7899999999999999988764  334466666544

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.99  E-value=0.0043  Score=49.25  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             EEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152          121 VVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH  157 (271)
Q Consensus       121 li~I-~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~  157 (271)
                      +|.| .|..|+||||++.++|..++..+.+|++++...
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3444 499999999999999999998888999998653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.96  E-value=0.0014  Score=49.82  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=21.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++.-=++|+|+||+|||||++.+.+.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34446889999999999999988654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.94  E-value=0.0016  Score=49.52  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      +.--++|+|.||+|||||++.+.+.
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3345889999999999999988764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0017  Score=48.74  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      -++|+|+|++|||||++.+.+
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999998875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0019  Score=49.19  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      +|+|+|.|++|||||++.+.+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999985

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.00037  Score=53.84  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +++|+|+||+||||++..|...+.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            788999999999999999986653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0026  Score=55.00  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=21.6

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      |..+.+++|+|+||+|||+++-.|..
T Consensus        22 f~~~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          22 FGESNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            33455999999999999999988853

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.82  E-value=0.0044  Score=51.36  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=32.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      .|+|.|.-|+||||++.+++..++..+.+|+.++..
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            567899999999999999999999888899999865

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0043  Score=54.22  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      -+.|+|++|+|||+++..++.++...+..++++|..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k   87 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN   87 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            479999999999999998888887777788888754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.78  E-value=0.0023  Score=49.03  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      +|+|+|.+|+|||||++.+++.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999998763

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0026  Score=50.32  Aligned_cols=19  Identities=37%  Similarity=0.469  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHV  139 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~i  139 (271)
                      +++|+|.+||||||++..+
T Consensus         5 iIgitG~igSGKStv~~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            7899999999999999865

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0026  Score=49.90  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -|+|+|+||+|||||++.+...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999998863

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.72  E-value=0.0019  Score=49.77  Aligned_cols=20  Identities=35%  Similarity=0.366  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~  141 (271)
                      ++|+|+|++|||||++.+++
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.70  E-value=0.0017  Score=50.55  Aligned_cols=26  Identities=35%  Similarity=0.192  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      +.-+|+|.|..||||||++..++...
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45589999999999999999887543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.69  E-value=0.0028  Score=50.05  Aligned_cols=19  Identities=42%  Similarity=0.471  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHV  139 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~i  139 (271)
                      +++|.|.+||||||++..+
T Consensus         4 iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999998755

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.68  E-value=0.0026  Score=47.88  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|++|+|||||++.+.+.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999988653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.62  E-value=0.0033  Score=47.43  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|++|+|||||+..+...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0033  Score=47.41  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++++|+||+|||||++.+..+
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988864

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.60  E-value=0.0096  Score=49.36  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      -++|+|..|+|||||+-.++.....
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            4899999999999999999876653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0034  Score=47.43  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|++|+|||||+..+....
T Consensus         6 i~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999988753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0036  Score=47.61  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|++|+|||||++.+...
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            689999999999999998763

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.54  E-value=0.002  Score=53.61  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      +++|+|+||||||+++..|..
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            999999999999999877754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.48  E-value=0.0032  Score=48.36  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      -++|+|++|+|||||++.+++
T Consensus        10 kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            479999999999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0039  Score=47.47  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|+||+|||||+..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            679999999999999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0043  Score=47.31  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|++|+|||||+..+...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0044  Score=46.79  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|++|+|||+|++.++..
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998865

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0055  Score=51.80  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      |...++++||+|+|||.|+..+|..+.
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhcc
Confidence            334788999999999999999998763

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.35  E-value=0.0028  Score=48.57  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|+|++|||||++.+.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.0051  Score=48.91  Aligned_cols=28  Identities=29%  Similarity=0.410  Sum_probs=25.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      +|.+|.|-|.-||||||++..++..+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            7999999999999999999998876643

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.32  E-value=0.0048  Score=46.76  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++++|++|+|||||+..++.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.31  E-value=0.0063  Score=50.20  Aligned_cols=35  Identities=23%  Similarity=0.167  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEcC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDA  155 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~----~~g~v~~~~~  155 (271)
                      -++|.|+||+||||.+..-+..+..    ...+|++++.
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~   54 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTF   54 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEES
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeC
Confidence            3678899999999887654443322    2236877764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.31  E-value=0.0041  Score=47.25  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      +-=-++|+|++|+|||||++.+..
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhc
Confidence            334589999999999999988754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0049  Score=46.53  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0048  Score=46.96  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|++|+|||||+..+...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.28  E-value=0.0014  Score=49.15  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|+|++|||||++.+.+.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0023  Score=48.74  Aligned_cols=21  Identities=19%  Similarity=0.240  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      -|+|+|+|++|||||++.+.+
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            499999999999999998854

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.24  E-value=0.0051  Score=46.35  Aligned_cols=21  Identities=19%  Similarity=0.476  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++++|.+|+|||||+..++..
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999988764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.23  E-value=0.0052  Score=47.20  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||||+..++..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0049  Score=47.40  Aligned_cols=20  Identities=25%  Similarity=0.302  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~  141 (271)
                      ++|+|++|+|||||+..++.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            68999999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0052  Score=46.61  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|+..++..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.20  E-value=0.0041  Score=51.01  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|+||+|||||++.|.+.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5889999999999999999875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.008  Score=50.78  Aligned_cols=38  Identities=26%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      |...+.++||+|+|||.+++.++..+.....+.+.++.
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~   89 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   89 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence            44478899999999999999999988644445555653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0054  Score=46.58  Aligned_cols=21  Identities=24%  Similarity=0.408  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++++|.+|+|||||+..+...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.17  E-value=0.0046  Score=54.91  Aligned_cols=28  Identities=25%  Similarity=0.363  Sum_probs=23.6

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      +.|. -++++||+|+|||-+|+.+|..+.
T Consensus        47 i~ks-NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          47 VTPK-NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCC-CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccc-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            3344 799999999999999999998663

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.16  E-value=0.052  Score=46.93  Aligned_cols=108  Identities=18%  Similarity=0.194  Sum_probs=48.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcC-------CeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH-HHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQG-------GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL-SLVDTL  192 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~-------g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-~~~~~l  192 (271)
                      -.+|+|+||+|||+++..+|..+....       ..++.++.....    + ..+         ..-..++-+ ..+..+
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~----a-g~~---------~~g~~e~r~~~i~~~~  110 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL----A-GAK---------YRGEFEERLKAVIQEV  110 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhh----c-ccC---------cchhHHHHHHHHHHHh
Confidence            357789999999999998888766421       233333322111    0 000         011233332 333333


Q ss_pred             HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccc
Q 024152          193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV  255 (271)
Q Consensus       193 ~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql  255 (271)
                      ....+.-.++||.+..+.......   |.          ......|+..+..-.+.+|..+..
T Consensus       111 ~~~~~~~ilfide~h~l~~~g~~~---g~----------~d~a~~Lkp~L~rg~~~~I~~tT~  160 (387)
T d1qvra2         111 VQSQGEVILFIDELHTVVGAGKAE---GA----------VDAGNMLKPALARGELRLIGATTL  160 (387)
T ss_dssp             HTTCSSEEEEECCC--------------------------------HHHHHTTCCCEEEEECH
T ss_pred             ccCCCceEEEeccHHHHhcCCCCC---Cc----------ccHHHHHHHHHhCCCcceeeecCH
Confidence            322345578999998887421100   11          122344455566677777777643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0059  Score=46.28  Aligned_cols=21  Identities=24%  Similarity=0.340  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||||+..++..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.0072  Score=47.50  Aligned_cols=28  Identities=14%  Similarity=0.133  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQR  145 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~  145 (271)
                      ...-++|+|+||+|||+++..+|..+..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence            3446899999999999999999998774

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.0058  Score=47.45  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|++|+|||||+..+...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999998864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0062  Score=45.95  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|+..+..+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0058  Score=46.20  Aligned_cols=21  Identities=29%  Similarity=0.646  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||||+..++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999988764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0061  Score=45.93  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      =++|+|++|+|||||+..+...
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.06  E-value=0.0098  Score=49.47  Aligned_cols=35  Identities=26%  Similarity=0.133  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEcC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDA  155 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~----~g~v~~~~~  155 (271)
                      -+.|.|+||+||||.+..-+..+...    ...+++++.
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~   64 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF   64 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEec
Confidence            36788999999998877644333222    236777764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.05  E-value=0.0071  Score=46.77  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=20.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .|.=++|.|++|+||||+++.+..
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            356689999999999999987664

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.04  E-value=0.0065  Score=45.83  Aligned_cols=21  Identities=19%  Similarity=0.465  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||||+..+...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0033  Score=50.21  Aligned_cols=26  Identities=23%  Similarity=0.235  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++.+|+|-|+-||||||++..++..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999988765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.007  Score=45.79  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|++|+|||+|+..+...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0071  Score=45.75  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++++|.+|+|||||+..+...-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999988653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0069  Score=46.07  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|+..+..+
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.048  Score=43.79  Aligned_cols=44  Identities=16%  Similarity=0.053  Sum_probs=36.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP  161 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~  161 (271)
                      ......|.|..|+|||-.+...+..+...+..|++.-.+....+
T Consensus        75 ~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~  118 (233)
T d2eyqa3          75 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ  118 (233)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHH
T ss_pred             CccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHH
Confidence            44688999999999999999999999888889988876654443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0072  Score=45.70  Aligned_cols=21  Identities=24%  Similarity=0.623  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|+..++..
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999998874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.93  E-value=0.0071  Score=46.80  Aligned_cols=24  Identities=33%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      .|.=++|.|++|+||||+++.++.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            356689999999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.92  E-value=0.0073  Score=45.25  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||||+..++..
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998865

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.91  E-value=0.0029  Score=53.67  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|.|+||+|||||++.++..+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            47999999999999999999865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0073  Score=45.27  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|+..+..+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999998864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.0077  Score=45.48  Aligned_cols=21  Identities=24%  Similarity=0.567  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|+..+...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0077  Score=45.90  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++++|.+|+|||||+..+..+-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999988643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0078  Score=46.15  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      =++|+|.+|+|||+|+..++..
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999998865

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.81  E-value=0.025  Score=46.48  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      -++|+|..|+|||||+-.++....
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Confidence            478999999999999999876543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.79  E-value=0.0091  Score=47.74  Aligned_cols=24  Identities=38%  Similarity=0.493  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -+|+|+|+|.+|||||+..+.+..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            369999999999999999998753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.01  Score=51.09  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEcC
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDA  155 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~~~~----~~g~v~~~~~  155 (271)
                      +.+++|.|+||+||||++..+...+..    .+.+|+....
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~Ap  203 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP  203 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecC
Confidence            679999999999999998776554432    2335555543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0082  Score=45.70  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|.+|+|||+|+..++..-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999888753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.007  Score=45.78  Aligned_cols=21  Identities=29%  Similarity=0.278  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            689999999999999988754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.70  E-value=0.0098  Score=47.58  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      +|+|.|..||||||++..++.
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988755

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.69  E-value=0.0054  Score=46.95  Aligned_cols=27  Identities=30%  Similarity=0.382  Sum_probs=22.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      |-++-==++|+|++|+|||||+..+..
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhc
Confidence            455666788999999999999988753

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.67  E-value=0.0084  Score=48.06  Aligned_cols=44  Identities=20%  Similarity=0.190  Sum_probs=34.0

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      .++.++.      |+-++|.+|.|+|||+.+...+......+++++|+..
T Consensus        51 ~i~~~l~------g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~P   94 (237)
T d1gkub1          51 WAKRILR------KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFP   94 (237)
T ss_dssp             HHHHHHT------TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEES
T ss_pred             HHHHHHC------CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEec
Confidence            4566664      6778899999999998887777666666677888764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0096  Score=44.83  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|+..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999998765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.64  E-value=0.0096  Score=45.02  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||||+..++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.60  E-value=0.0098  Score=45.01  Aligned_cols=21  Identities=19%  Similarity=0.463  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++++|.+|+|||||+..++..
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998864

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.57  E-value=0.01  Score=46.24  Aligned_cols=45  Identities=24%  Similarity=0.383  Sum_probs=30.4

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      ..++.+..      |.-++|.+|+|+|||+.+...+.......++++|+..
T Consensus        32 ~ai~~l~~------~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P   76 (202)
T d2p6ra3          32 EAVEKVFS------GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP   76 (202)
T ss_dssp             HHHHHHTT------CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             HHHHHHHc------CCCEEEEcCCCCchhHHHHHHHHHHhhccCcceeecc
Confidence            45666665      3457799999999998775444434445567787754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.57  E-value=0.011  Score=45.37  Aligned_cols=25  Identities=36%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      .|.=+.|.|++|+||||+++.++..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3667899999999999999877654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.54  E-value=0.0054  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      =++|+|+||+|||||++.++..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3779999999999999988643

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.40  E-value=0.088  Score=39.53  Aligned_cols=124  Identities=18%  Similarity=0.226  Sum_probs=68.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-C-C--HHHHHHcCCcCCccee---cCCCCHH-------
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-L-D--PSLAETIGVKTENLLL---AQPDCGE-------  183 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~-~--~~~~~~~g~~~~~~~~---~~~~~~~-------  183 (271)
                      +|- +.|.=-+|=||||-|+-++..++-.+.+|+++-.--. . .  .......++.+.....   ....+.+       
T Consensus         2 kG~-i~vytG~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~   80 (157)
T d1g5ta_           2 RGI-IIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM   80 (157)
T ss_dssp             CCC-EEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred             CcE-EEEEeCCCCCcHHHHHHHHHHHhcCCCEEEEEEEecCCcccchhhhhcccCcEEEEecCCCcccCCChHHHHHHHH
Confidence            454 4445558999999999999999988889888864221 1 1  1222223333221111   1111222       


Q ss_pred             HHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152          184 QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI  258 (271)
Q Consensus       184 e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~  258 (271)
                      +...+++........+++|+|.+.......-++              ..+....|+  .+-.+.-||++-.....
T Consensus        81 ~~~~~a~~~~~~~~~dllILDEi~~Ai~~gli~--------------~~~v~~ll~--~rp~~~evVlTGr~~p~  139 (157)
T d1g5ta_          81 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP--------------LEEVISALN--ARPGHQTVIITGRGCHR  139 (157)
T ss_dssp             HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC--------------HHHHHHHHH--TSCTTCEEEEECSSCCH
T ss_pred             HHHHHHHHHhhcCccCEEeHHHHHHHHHcCCCC--------------HHHHHHHHH--hCCCCCEEEEECCCCCH
Confidence            223344555556789999999998665322111              112233332  24567788888765443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.35  E-value=0.0064  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=8.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|.+|+|||||+..++..-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSEDA   30 (173)
T ss_dssp             EEEECCCCC-------------
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999888643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.012  Score=44.60  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|+..+...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.0062  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|.+|+|||+|+..++..-
T Consensus         6 i~vvG~~~vGKTsli~~~~~~~   27 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTGE   27 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC---
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6889999999999999887653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.015  Score=44.46  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|.+|+|||+|+..++..-
T Consensus         5 ivliG~~~vGKTsli~r~~~~~   26 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDC   26 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999888753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.015  Score=44.66  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++|+|.+|+|||+|+..++..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999988764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.015  Score=44.82  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|.+|+|||+|+..+...-
T Consensus         6 vvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999887653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.96  E-value=0.014  Score=44.86  Aligned_cols=19  Identities=26%  Similarity=0.427  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVI  140 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia  140 (271)
                      ++|.|.+|+|||||++.+.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6899999999999999984

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.017  Score=44.17  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++++|.+|+|||||+..++..
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.85  E-value=0.029  Score=46.08  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      .|=..+. ++.++-..+.|.||+++|||+|+..|+..+
T Consensus        92 ~l~~~L~-~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          92 VFLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHc-CCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3444454 588999999999999999999999988765

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.58  E-value=0.015  Score=50.76  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~  141 (271)
                      -|+|+|+||+|||||++.+.+
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            399999999999999999986

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.023  Score=45.13  Aligned_cols=25  Identities=28%  Similarity=0.276  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          120 RVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       120 ~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      .+|+|-|.-||||||++..++..+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4899999999999999999987654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.14  E-value=0.049  Score=44.02  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE  156 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e  156 (271)
                      =+.|.|++|+|||++|..|...........+.++..
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~   60 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVA   60 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETT
T ss_pred             CEEEECCCCcCHHHHHHHHHHhcCCcccccccchhh
Confidence            478999999999999999987555555555555543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.14  E-value=0.035  Score=46.07  Aligned_cols=29  Identities=21%  Similarity=0.189  Sum_probs=23.6

Q ss_pred             CCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          114 GGLPKGRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      |-+-.+--++|+|-|.+|||||...+...
T Consensus         5 ~~~~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           5 GRPGNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            34445556999999999999999999864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.09  E-value=0.028  Score=44.45  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      =++|+|.+|+|||||++.+...
T Consensus         8 KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.97  E-value=0.03  Score=42.67  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|.|..|+|||+|++.+....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999986653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.84  E-value=0.03  Score=48.14  Aligned_cols=28  Identities=32%  Similarity=0.487  Sum_probs=23.4

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152          115 GLPKGRVVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ..+++. +.++||+|+|||-+++.+|...
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            566775 6677999999999999998764

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.78  E-value=0.058  Score=41.34  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=25.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcC
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDA  155 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~  155 (271)
                      ++|++|.|+|||..+..++.... ..+++++|+..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P   60 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP   60 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence            56889999999987776665444 34567888764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.77  E-value=0.036  Score=41.97  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=22.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQRQGG  148 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~~~~g  148 (271)
                      ++|+|..|+|||+|++.+...--+..+
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            689999999999999998766555444

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.48  E-value=0.11  Score=44.07  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 024152          122 VEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ++|+|..++|||||+-.+.....
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCC
Confidence            99999999999999998876554

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.17  E-value=0.047  Score=39.32  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=25.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      +..+..+|.+|.|+|||+++..++   ...+.++++.-.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~---~~~~~~vli~~P   41 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLNP   41 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHH---HTTTCCEEEEES
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHH---HHcCCcEEEEcC
Confidence            356788999999999998764433   344556776654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.94  E-value=0.026  Score=47.82  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID  154 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~  154 (271)
                      .|.|-|.-|+||||+++.++......+..++++.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            3889999999999999999887776666677664

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.51  E-value=0.037  Score=46.14  Aligned_cols=22  Identities=18%  Similarity=0.232  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|.|.+|||||.+.+.+.-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7899999999999999997643

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.19  E-value=0.29  Score=39.73  Aligned_cols=42  Identities=26%  Similarity=0.213  Sum_probs=34.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL  159 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~  159 (271)
                      ......|.|.-|||||-.+...+..+...+..|++.-.+...
T Consensus       103 ~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~L  144 (264)
T d1gm5a3         103 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSIL  144 (264)
T ss_dssp             SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHH
T ss_pred             CcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhh
Confidence            344678999999999999999998888888888887655443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.96  E-value=0.064  Score=43.92  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|-|.+|||||...+...
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999988854

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.44  E-value=0.083  Score=43.57  Aligned_cols=22  Identities=18%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      -++|+|..++|||||++.+++.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHhCC
Confidence            3789999999999999999974

>d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Bacterial cell division inhibitor SulA
domain: Hypothetical protein PA3008
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.38  E-value=2  Score=30.08  Aligned_cols=110  Identities=24%  Similarity=0.251  Sum_probs=75.8

Q ss_pred             EEEEEcCCCCc-HHHHHHHHHHHHhhc--CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCC
Q 024152          121 VVEIYGPEASG-KTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS  197 (271)
Q Consensus       121 li~I~G~~G~G-KTtl~~~ia~~~~~~--~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~  197 (271)
                      ++++.++...| =..|+.-+...+...  +..++|++.............|++++++.+.+..+..+.+..+.+..+...
T Consensus         4 ~~el~~~~~~~~~l~LL~P~L~~l~~~~~~rwi~wI~Pp~~p~a~~L~~~Gi~~~rll~v~~~~~~d~lwa~EqaL~sg~   83 (119)
T d1ofux_           4 FSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGR   83 (119)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred             cceecccCCcHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCccCHHHHHHcCCCCCeEEEEeCCChHHHHHHHHHHHhcCC
Confidence            44555544444 355555555555432  346999998888887778889999999999998899999998888887778


Q ss_pred             ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEE
Q 024152          198 VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFI  252 (271)
Q Consensus       198 ~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~  252 (271)
                      +..|+.-. ..+.          .           ..+|.|..-|++.+++.+++
T Consensus        84 ~~aVl~w~-~~l~----------~-----------~~~RRLqlAA~~g~t~~~ll  116 (119)
T d1ofux_          84 SHTVVSWL-EPLS----------R-----------AARKQLSRAAQLGQAQSLNI  116 (119)
T ss_dssp             EEEEEECC-SSCC----------H-----------HHHHHHHHHHHHHTCEEEEE
T ss_pred             ccEEEEcC-CCCC----------h-----------HHHHHHHHHHHhcCCEEEEE
Confidence            88877543 1111          0           33566666677777777665

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.30  E-value=0.12  Score=40.03  Aligned_cols=23  Identities=30%  Similarity=0.260  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 024152          121 VVEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      -++|+|...+|||||+..+.+..
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            38899999999999999887654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=89.78  E-value=0.081  Score=40.64  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~  141 (271)
                      ++|+|...+|||||+..|.+
T Consensus         8 IaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEeccCCcHHHHHHHHHh
Confidence            68999999999999999975

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.69  E-value=0.11  Score=43.26  Aligned_cols=21  Identities=43%  Similarity=0.664  Sum_probs=18.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHH
Q 024152          117 PKGRVVEIYGPEASGKTTLAL  137 (271)
Q Consensus       117 ~~G~li~I~G~~G~GKTtl~~  137 (271)
                      +.|++.++.|-+|+|||||..
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            368999999999999999863

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.46  E-value=0.14  Score=43.20  Aligned_cols=32  Identities=16%  Similarity=0.160  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      .|.|-|.-|+||||++..++......+ .+.++
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence            478999999999999998887665443 45555

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.42  E-value=0.093  Score=43.11  Aligned_cols=24  Identities=29%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 024152          119 GRVVEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       119 G~li~I~G~~G~GKTtl~~~ia~~  142 (271)
                      =.++.|+|+.++|||+|++.+++.
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCC
Confidence            358999999999999999998864

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.40  E-value=0.11  Score=43.35  Aligned_cols=20  Identities=40%  Similarity=0.672  Sum_probs=18.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLAL  137 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~  137 (271)
                      .|++.++.|-+|+|||||..
T Consensus        13 ~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCCEEEEEccCCCCcccccc
Confidence            58999999999999999864

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.39  E-value=0.16  Score=42.52  Aligned_cols=20  Identities=40%  Similarity=0.677  Sum_probs=18.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLAL  137 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~  137 (271)
                      .|++.++.|-+|+|||||..
T Consensus        13 ~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            68999999999999999973

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=87.35  E-value=0.19  Score=40.75  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=22.0

Q ss_pred             CCCC-CcEEEEEcCCCCcHHHHHHHHHH
Q 024152          115 GLPK-GRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       115 Gl~~-G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      |..+ +--++|+|.|.+|||||++.+.+
T Consensus       107 ~~~~~~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         107 GVKPRAIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             TCCCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             cCCCCceEEEEEecCccchhhhhhhhhc
Confidence            3444 44489999999999999999886

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=86.72  E-value=0.24  Score=45.80  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ..+.|+|.|++|+|||+-++.++..++
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            788999999999999999998876543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.00  E-value=0.17  Score=41.34  Aligned_cols=22  Identities=14%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAEA  143 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~~  143 (271)
                      ++|+|.-++|||||++.+++.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999743

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.66  E-value=0.29  Score=45.44  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ..+.|+|.|++|+|||.-++.++..++
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999998877654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=85.24  E-value=0.25  Score=38.08  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIA  141 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~  141 (271)
                      |.=-++|+|...+|||||+..|++
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHh
Confidence            333589999999999999999875

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=85.05  E-value=0.32  Score=45.11  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=24.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ..+.|+|.|.+|+|||+-++.++..++
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999988765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=84.68  E-value=0.31  Score=38.41  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 024152          122 VEIYGPEASGKTTLALHVIAE  142 (271)
Q Consensus       122 i~I~G~~G~GKTtl~~~ia~~  142 (271)
                      ++++|...+|||||+..|+..
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~   32 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHD   32 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            589999999999999988654

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.47  E-value=0.5  Score=36.35  Aligned_cols=42  Identities=29%  Similarity=0.214  Sum_probs=28.0

Q ss_pred             HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152          105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA  155 (271)
Q Consensus       105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~  155 (271)
                      ..++.++.      +.-.+|.+|.|+|||..+..++..   .+++++++..
T Consensus        77 eav~~~~~------~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~Liv~p  118 (206)
T d2fz4a1          77 KALERWLV------DKRGCIVLPTGSGKTHVAMAAINE---LSTPTLIVVP  118 (206)
T ss_dssp             HHHHHHTT------TSEEEEEESSSTTHHHHHHHHHHH---SCSCEEEEES
T ss_pred             HHHHHHHh------CCCcEEEeCCCCCceehHHhHHHH---hcCceeEEEc
Confidence            55666665      234568889999999877665543   3456777754

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.96  E-value=0.36  Score=45.31  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ..+.|+|.|.+|+|||.-++.++..++
T Consensus       122 ~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         122 ENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            788999999999999999998887665

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=83.30  E-value=0.36  Score=45.28  Aligned_cols=27  Identities=26%  Similarity=0.251  Sum_probs=24.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ..+.|+|.|.+|+|||.-++.++..++
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998888766

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.21  E-value=0.75  Score=32.60  Aligned_cols=39  Identities=13%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCC-eEEEEcCC
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQR-QGG-YCVFIDAE  156 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g-~v~~~~~e  156 (271)
                      .|=.+.+.|-+|+||+|++..+...+.. .++ +|-.++..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            5668889999999999999999777765 444 56666554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=82.05  E-value=0.25  Score=41.50  Aligned_cols=31  Identities=35%  Similarity=0.452  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152          121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI  153 (271)
Q Consensus       121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~  153 (271)
                      .|.|-|+-|+||||++..++.....  ..+.++
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~--~~v~~~   36 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR--DDIVYV   36 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC------CCEEEE
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC--CCeEEe
Confidence            4889999999999999988765432  245555

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=81.87  E-value=0.55  Score=43.58  Aligned_cols=27  Identities=19%  Similarity=0.226  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152          118 KGRVVEIYGPEASGKTTLALHVIAEAQ  144 (271)
Q Consensus       118 ~G~li~I~G~~G~GKTtl~~~ia~~~~  144 (271)
                      ..+.|+|.|++|+|||.-++.++..++
T Consensus        93 ~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          93 RNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            788999999999999999999887665