Citrus Sinensis ID: 024153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELILPDNVMQDKVPKTA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccEEccccEEEEEEEEccccEEccccEEEcccccEEEccccccccccEEEEcccccccccccEEEccccEEccccEEEcEEEccccEEEEccEEccccEEccccEEccccccccccEEccccEEEcccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHccHcccccHHHHHHcccccHHccccccccccccEEEccccEEEEEEEEccccEEccEEEEEccccEEEEcccccccccEEEEEEccccccccccEEEcccEEEccEEEEEEEEEcccEEEEccEEEEcccEEcccEEEEEccccccccEccccEEEEcccHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHccEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGTLGKAIYSVGFWIRETGQALDRLGcrlqgnyyFQEQLSRHRTLMnifdkapvvnkdvflapsasiigdvqvgrgssiwygcvlrgdvnsisigsgtniqdnSLVHVAKsnlagkvlptiigdnvtvGHSAVlhgctvedeafvgMGATLLDGVYVEKHAMVAAGALVrqntkipcgevwggnparFLRKLTEEEMAFISQSAINYSNLARVHAaenaksfdEIEFEKLLRKKFARRDEEYDSMlgvvretpaelilpdnvmqdkvpkta
Flexible Loop (DISEMBL)
MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGAlvrqntkipcgevwggNPARFLRKLTEEEMAFISQSAINYSNLARVHAAenaksfdeiefEKLLRKKFARrdeeydsmlgvvretpaelilpdnvmqdkvpkta
Low Complexity Region (SEG)
MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELILPDNVMQDKVPKTA
Disordered region (IsUnstruct)
****GKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRET**ELI**************
Disordered Region (DISOPRED)
****GKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELILPDNV*********
Disordered Region (DISEMBL)
MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELILPDNVMQDKVPKTA
Disordered Region (DISPRO)
*GTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELILPDNVMQD******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELILPDNVMQDKVPKTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9FWR5	275	Gamma carbonic anhydrase	yes	no	0.992	0.978	0.821	1e-133
Q9C6B3	278	Gamma carbonic anhydrase	no	no	0.996	0.971	0.756	1e-127
Q94AU7	258	Gamma carbonic anhydrase	no	no	0.952	1.0	0.734	1e-116
Q54JC2	246	Uncharacterized protein D	yes	no	0.859	0.947	0.402	3e-47
Q57752	159	Uncharacterized protein M	yes	no	0.564	0.962	0.452	5e-34
Q9FMV1	252	Gamma carbonic anhydrase-	no	no	0.627	0.674	0.405	2e-32
Q9SMN1	256	Gamma carbonic anhydrase-	no	no	0.627	0.664	0.394	1e-31
P0A9X0	184	Protein YrdA OS=Shigella	no	no	0.583	0.858	0.433	1e-30
P0A9W9	184	Protein YrdA OS=Escherich	N/A	no	0.583	0.858	0.433	1e-30
P40882	174	Uncharacterized protein P	no	no	0.568	0.885	0.387	2e-28

>sp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1

 Score =  476 bits (1224), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/269 (82%), Positives = 247/269 (91%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLG+A YSVGFWIRETGQALDRLGCRLQG  YF+EQLSRHRTLMN+FDKAP+V+K+ F
Sbjct: 1   MGTLGRAFYSVGFWIRETGQALDRLGCRLQGKNYFREQLSRHRTLMNVFDKAPIVDKEAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSAS+IGDV +GRGSSIWYGCVLRGDVN++S+GSGTNIQDNSLVHVAKSNL+GKV PT
Sbjct: 61  VAPSASVIGDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKVHPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVT+GHSAVLHGCTVEDE F+GMGATLLDGV VEKH MVAAGALVRQNT+IP GEV
Sbjct: 121 IIGDNVTIGHSAVLHGCTVEDETFIGMGATLLDGVVVEKHGMVAAGALVRQNTRIPSGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPARFLRKLT+EE+AFISQSA NYSNLA+ HAAENAK  + IEFEK+LRKK A +DE
Sbjct: 181 WGGNPARFLRKLTDEEIAFISQSATNYSNLAQAHAAENAKPLNVIEFEKVLRKKHALKDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPK 269
           EYDSMLG+VRETP EL LP+N++ DK  K
Sbjct: 241 EYDSMLGIVRETPPELNLPNNILPDKETK 269

Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. Mediates complex I assembly in mitochondria and respiration.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q9C6B3|GCA2_ARATH Gamma carbonic anhydrase 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA2 PE=1 SV=1

 Score =  453 bits (1166), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 208/275 (75%), Positives = 251/275 (91%), Gaps = 5/275 (1%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLG+AIY+VG WIR TGQALDR+G  LQG++  +E LSRHRTLMN+FDK+P+V+KDVF
Sbjct: 1   MGTLGRAIYTVGNWIRGTGQALDRVGSLLQGSHRIEEHLSRHRTLMNVFDKSPLVDKDVF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSAS+IGDVQ+G+GSSIWYGCVLRGDVN+IS+GSGTNIQDN+LVHVAK+N++GKVLPT
Sbjct: 61  VAPSASVIGDVQIGKGSSIWYGCVLRGDVNNISVGSGTNIQDNTLVHVAKTNISGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           +IGDNVTVGHSAV+HGCTVED+AFVGMGATLLDGV VEKHAMVAAG+LV+QNT+IP GEV
Sbjct: 121 LIGDNVTVGHSAVIHGCTVEDDAFVGMGATLLDGVVVEKHAMVAAGSLVKQNTRIPSGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+F+RKLT+EE+ +ISQSA NY NLA++HA+EN+KSF++IE E+ LRKK+AR+DE
Sbjct: 181 WGGNPAKFMRKLTDEEIVYISQSAKNYINLAQIHASENSKSFEQIEVERALRKKYARKDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQD-----KVPKT 270
           +YDSMLG+ RETP ELILPDNV+       KVP T
Sbjct: 241 DYDSMLGITRETPPELILPDNVLPGGKPVAKVPST 275

Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide (PubMed:19808034). Mediates complex I assembly in mitochondria and respiration. Binds HCO(3)-. Required for male fertility during anther development and dehiscence to regulate the secondary thickenings of the endothecial cell wall, probably by modulating H(2)O(2)-dependent lignin polymerization.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q94AU7|GCA3_ARATH Gamma carbonic anhydrase 3, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA3 PE=1 SV=1

 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/271 (73%), Positives = 229/271 (84%), Gaps = 13/271 (4%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGT+GKA YSVGFWIRETGQALDRLGCRLQG  +F+EQLSRHRTLMN+FDK P V+K  F
Sbjct: 1   MGTMGKAFYSVGFWIRETGQALDRLGCRLQGKNHFREQLSRHRTLMNVFDKTPNVDKGAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +AP+AS+ GDV VGRGSSIWYGCVLRGD NSIS+G+GTNIQDN+LVHVAK+NL+GKVLPT
Sbjct: 61  VAPNASLSGDVHVGRGSSIWYGCVLRGDANSISVGAGTNIQDNALVHVAKTNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           +IGDNVT+GHSAVLHGCTVEDEA++G  AT+LDG +VEKHAMVA+GALVRQNT+IP GEV
Sbjct: 121 VIGDNVTIGHSAVLHGCTVEDEAYIGTSATVLDGAHVEKHAMVASGALVRQNTRIPSGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+FLRK+TEEE  F S SA+ YSNLA+ HA ENAK+ DE EF+KLL KK A RD 
Sbjct: 181 WGGNPAKFLRKVTEEERVFFSSSAVEYSNLAQAHATENAKNLDEAEFKKLLNKKNA-RDT 239

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPKTA 271
           EYDS+L        +L LP+N     VPK A
Sbjct: 240 EYDSVLD-------DLTLPEN-----VPKAA 258

Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. Mediates complex I assembly in mitochondria and respiration.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q54JC2|Y2881_DICDI Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 147/236 (62%), Gaps = 3/236 (1%)

Query: 11  VGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGD 70
           +G  ++ TG  L R GC++QG+Y + E+L+RH  L    D AP+V +  F+AP+ASIIGD
Sbjct: 10  LGEVVKNTGLILHRTGCKMQGDYAYVEKLNRHTRLTAFGDNAPIVGQKSFIAPNASIIGD 69

Query: 71  VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH 130
           V +G+ SSIWY  VLRGDVNSI IG  T + D ++VH + +   G   PT IGD V +G 
Sbjct: 70  VVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLGP-KPTQIGDKVYIGP 128

Query: 131 SAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR 190
            +++H  T+  E+F+G G+TL DG  VEK+  + AG+L+     I  GE WGG+PA+F+R
Sbjct: 129 GSIVHAATILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGSPAKFIR 188

Query: 191 KLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSML 246
           ++T+++ + + +      NL+  H  + +KS  E+  +  L +K+ +     D +L
Sbjct: 189 QVTKDDESQLEKIIEQNINLSEQHEKQTSKSAKELNND--LLQKYVKNRTRSDHIL 242

Dictyostelium discoideum (taxid: 44689)

>sp|Q57752|Y304_METJA Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0304 PE=3 SV=1

 Score =  144 bits (364), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 6/159 (3%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL 113
           +++K+V +A  A I+GDV +G  SS+WY  V+RGDV+ I IG+ +NIQD  +VH +K   
Sbjct: 1   MISKNVRIAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIIIGNYSNIQDCCVVHCSKG-- 58

Query: 114 AGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT 173
                PTIIGD V++GH AV+HGC +ED   VGM AT+L+G  + ++ ++ A ALV QN 
Sbjct: 59  ----YPTIIGDYVSIGHGAVIHGCRIEDNVLVGMNATILNGAKIGENCIIGANALVTQNK 114

Query: 174 KIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR 212
           +IP   +  G P R +R+LTEEE+  I ++A+ Y  L+ 
Sbjct: 115 EIPPNSLVLGVPGRVVRELTEEEIKSIKENALRYVKLSE 153

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q9FMV1|GCAL1_ARATH Gamma carbonic anhydrase-like 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL1 PE=1 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 105/170 (61%)

Query: 42  HRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQ 101
            R ++ +    P V  D ++AP+  + G V V  GSS+W G VLRGD+N I++G  +N+Q
Sbjct: 55  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQ 114

Query: 102 DNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHA 161
           +  +VH A S+  G    TII   VTVG  ++L  CT+E E  +G  + L++G  VE  +
Sbjct: 115 ERCVVHAAWSSPTGLPAATIIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRS 174

Query: 162 MVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 211
           ++ AG++V    +IP GE+WGGNPARF+R LT EE   I + A+  ++L+
Sbjct: 175 ILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLS 224

Involved in complex I assembly in mitochondria and respiration.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMN1|GCAL2_ARATH Gamma carbonic anhydrase-like 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL2 PE=1 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 105/170 (61%)

Query: 42  HRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQ 101
            R ++ +    P V  D ++AP+  + G V V  GSS+W G VLRGD+N I++G  +N+Q
Sbjct: 59  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQ 118

Query: 102 DNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHA 161
           +  +VH A S+  G    T+I   VTVG  ++L  CT+E E  +G  + L++G  VE  +
Sbjct: 119 ERCVVHAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRS 178

Query: 162 MVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 211
           ++ AG+++    +IP GE+WGGNPARF+R LT EE   I + A+  ++L+
Sbjct: 179 ILEAGSVLPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLS 228

Involved in complex I assembly in mitochondria and respiration.

Arabidopsis thaliana (taxid: 3702)

>sp|P0A9X0|YRDA_SHIFL Protein YrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 50  DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA 109
           D  P + + V +  S+ +IGDV++     IW   V+RGDV+ + IG+ TNIQD S++HV 
Sbjct: 10  DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVT 69

Query: 110 -KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGAL 168
            KS+      P  IG++VTVGH  +LHGCT+ +   VGMG+ LLDG  VE   M+ AG+L
Sbjct: 70  HKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSL 129

Query: 169 VRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY 207
           V QN ++  G ++ G+P + +R L++EE A +  SA NY
Sbjct: 130 VPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168

Shigella flexneri (taxid: 623)

>sp|P0A9W9|YRDA_ECOLI Protein YrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 50  DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA 109
           D  P + + V +  S+ +IGDV++     IW   V+RGDV+ + IG+ TNIQD S++HV 
Sbjct: 10  DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVT 69

Query: 110 -KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGAL 168
            KS+      P  IG++VTVGH  +LHGCT+ +   VGMG+ LLDG  VE   M+ AG+L
Sbjct: 70  HKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSL 129

Query: 169 VRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY 207
           V QN ++  G ++ G+P + +R L++EE A +  SA NY
Sbjct: 130 VPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168

Escherichia coli (strain K12) (taxid: 83333)

>sp|P40882|Y3753_PSEAE Uncharacterized protein PA3753 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3753 PE=3 SV=2

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 102/160 (63%), Gaps = 6/160 (3%)

Query: 56  NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAG 115
           + D ++APSA++IG V++  G+S+W+G VLRGD   I IG  +N+QD S++H        
Sbjct: 13  HPDSWIAPSAAVIGKVRLDAGASVWFGAVLRGDNELIHIGEHSNVQDGSVMHTDMG---- 68

Query: 116 KVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI 175
              P  +G  VTVGH+A+LHGC+V D + VG+ A +L+G  + K+ ++ A AL+ +  +I
Sbjct: 69  --YPLTLGKGVTVGHNAMLHGCSVGDYSLVGINAVILNGAKIGKYCIIGANALIPEGKEI 126

Query: 176 PCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHA 215
           P G +  G+P + +R+L+E +   +  SA +Y + AR +A
Sbjct: 127 PDGSLVMGSPGKVVRELSEPQKKMLEASAAHYVHNARRYA 166

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
449457524	271	PREDICTED: gamma carbonic anhydrase 1, m	1.0	1.0	0.907	1e-147
449499995	271	PREDICTED: gamma carbonic anhydrase 1, m	1.0	1.0	0.900	1e-146
225458237	272	PREDICTED: uncharacterized protein DDB_G	1.0	0.996	0.896	1e-145
255538694	271	Protein yrdA, putative [Ricinus communis	0.992	0.992	0.907	1e-144
225458239	280	PREDICTED: uncharacterized protein DDB_G	1.0	0.967	0.870	1e-143
449469963	273	PREDICTED: gamma carbonic anhydrase 1, m	0.992	0.985	0.892	1e-142
224134252	271	predicted protein [Populus trichocarpa]	1.0	1.0	0.889	1e-142
255538692	271	Protein yrdA, putative [Ricinus communis	0.992	0.992	0.892	1e-142
224082886	271	predicted protein [Populus trichocarpa]	0.992	0.992	0.888	1e-141
224066191	271	predicted protein [Populus trichocarpa]	0.981	0.981	0.890	1e-140

>gi|449457524|ref|XP_004146498.1| PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/271 (90%), Positives = 264/271 (97%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLGKAIY+VGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVV+KD F
Sbjct: 1   MGTLGKAIYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSASIIGDVQVGRGSSIWYGCVLRGDVNSIS+GSGTNIQDNSLVHVAKSNL+GKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVTVGHSAVLHGCT+EDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT++PCGEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTIEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTRVPCGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+FLRKLTEEEM FISQSAINYSNL++VHAAEN KSFDEIE EK+LRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTEEEMVFISQSAINYSNLSQVHAAENVKSFDEIELEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPKTA 271
           +YDSMLGVVRETP EL+LPDN++ DKV K++
Sbjct: 241 DYDSMLGVVRETPPELVLPDNILADKVAKSS 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499995|ref|XP_004160973.1| PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 244/271 (90%), Positives = 262/271 (96%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLGKAIY+VGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVV+ D F
Sbjct: 1   MGTLGKAIYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDMDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSASIIGDVQVGRGSSIWYGCVLRGDVNSIS+GSGTNIQDNSLVHVAKSNL+GKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVTVGHSAVLHGCT+EDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT++PCGEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTIEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTRVPCGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+FLRKLTEEEM FI QSAINYSNL++VHAAEN KSFDEIE EK+LRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTEEEMVFICQSAINYSNLSQVHAAENVKSFDEIELEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPKTA 271
           +YDSMLGVVRETP EL+LPDN++ DKV K++
Sbjct: 241 DYDSMLGVVRETPPELVLPDNILADKVAKSS 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458237|ref|XP_002282021.1| PREDICTED: uncharacterized protein DDB_G0288155 isoform 1 [Vitis vinifera] gi|147856360|emb|CAN79636.1| hypothetical protein VITISV_014473 [Vitis vinifera] gi|302142516|emb|CBI19719.3| unnamed protein product [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/271 (89%), Positives = 262/271 (96%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLGKAIY+VGFWIRETGQA+DRLGCRLQGNYYF EQ+SRHRTLMN+FDKAP+V+KD F
Sbjct: 1   MGTLGKAIYTVGFWIRETGQAIDRLGCRLQGNYYFLEQISRHRTLMNLFDKAPIVDKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSASIIGDVQVGRGSSIWYGCVLRGDVNSIS+GSGTNIQDNSLVHVAKSNL+GKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDG  VEKHAMVAAGALVRQNT+IPCGEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGSIVEKHAMVAAGALVRQNTRIPCGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+FLRKLT+EE+AFISQSAINYSNLA+VHAAENAK FDEIEFEK+LRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTDEEIAFISQSAINYSNLAQVHAAENAKPFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPKTA 271
           +YDSMLGVVRETP ELILPDN++ DK PK +
Sbjct: 241 DYDSMLGVVRETPPELILPDNILPDKAPKVS 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538694|ref|XP_002510412.1| Protein yrdA, putative [Ricinus communis] gi|223551113|gb|EEF52599.1| Protein yrdA, putative [Ricinus communis]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/269 (90%), Positives = 258/269 (95%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLG+AIYS+GFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMN+FDKAPVV+KD F
Sbjct: 1   MGTLGRAIYSIGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNVFDKAPVVDKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSASIIGDVQVGRG+SIWYGCVLRGDVNSISIGSGTNIQDN+LVHVAKSNL+GKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGASIWYGCVLRGDVNSISIGSGTNIQDNTLVHVAKSNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVTVGHSAVLHGCTVEDEAFVGMG TLLDGV VEK+AMVAAGALVRQNTKIP GEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGTTLLDGVVVEKNAMVAAGALVRQNTKIPAGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPARFLRKLT+EE+AFI QSA NYSNLA+VHA ENAK FDEIEFEK+LRKKFARRDE
Sbjct: 181 WGGNPARFLRKLTDEEIAFIMQSATNYSNLAQVHATENAKPFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPK 269
           EYDSMLGVVRETP ELILPDNV+ DK PK
Sbjct: 241 EYDSMLGVVRETPPELILPDNVLPDKAPK 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458239|ref|XP_002282034.1| PREDICTED: uncharacterized protein DDB_G0288155 isoform 2 [Vitis vinifera]

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/279 (87%), Positives = 262/279 (93%), Gaps = 8/279 (2%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLGKAIY+VGFWIRETGQA+DRLGCRLQGNYYF EQ+SRHRTLMN+FDKAP+V+KD F
Sbjct: 1   MGTLGKAIYTVGFWIRETGQAIDRLGCRLQGNYYFLEQISRHRTLMNLFDKAPIVDKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRG--------DVNSISIGSGTNIQDNSLVHVAKSN 112
           +APSASIIGDVQVGRGSSIWYGCVLRG        DVNSIS+GSGTNIQDNSLVHVAKSN
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGKMLWSKLGDVNSISVGSGTNIQDNSLVHVAKSN 120

Query: 113 LAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
           L+GKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDG  VEKHAMVAAGALVRQN
Sbjct: 121 LSGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGSIVEKHAMVAAGALVRQN 180

Query: 173 TKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLR 232
           T+IPCGEVWGGNPA+FLRKLT+EE+AFISQSAINYSNLA+VHAAENAK FDEIEFEK+LR
Sbjct: 181 TRIPCGEVWGGNPAKFLRKLTDEEIAFISQSAINYSNLAQVHAAENAKPFDEIEFEKVLR 240

Query: 233 KKFARRDEEYDSMLGVVRETPAELILPDNVMQDKVPKTA 271
           KKFARRDE+YDSMLGVVRETP ELILPDN++ DK PK +
Sbjct: 241 KKFARRDEDYDSMLGVVRETPPELILPDNILPDKAPKVS 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469963|ref|XP_004152688.1| PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus] gi|449520036|ref|XP_004167040.1| PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/269 (89%), Positives = 260/269 (96%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLGKAIY+VGFWIRETGQA+DRLGCRLQG Y+FQEQLSRHRTLMN+FDKAPVV+KD F
Sbjct: 1   MGTLGKAIYTVGFWIRETGQAIDRLGCRLQGRYFFQEQLSRHRTLMNVFDKAPVVDKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSASIIGDVQVGRGSSIWYGCVLRGDVNSIS+GSGTNIQDNSLVHVAKSNL+GKVLPT
Sbjct: 61  VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVT+GHSAV+HGCTVEDEAFVGMGATLLDGV VEK+AMVAAGALVRQNTKIP GEV
Sbjct: 121 IIGDNVTIGHSAVIHGCTVEDEAFVGMGATLLDGVVVEKNAMVAAGALVRQNTKIPSGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+FLRKLT+EE+AFISQSA NY NL++VHAAENAKSFDEIEFEK+LRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTDEEIAFISQSATNYLNLSQVHAAENAKSFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPK 269
           +YDSMLGVVRETP ELILPDN++ DK PK
Sbjct: 241 DYDSMLGVVRETPPELILPDNILPDKDPK 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134252|ref|XP_002327793.1| predicted protein [Populus trichocarpa] gi|222836878|gb|EEE75271.1| predicted protein [Populus trichocarpa]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/271 (88%), Positives = 258/271 (95%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLG+AIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMN+FDKAPVV KD F
Sbjct: 1   MGTLGRAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNVFDKAPVVEKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSASI G+V VGR SSIWYGCVLRGDVNSIS+GSGTNIQDNSLVHVAKSNL+GKVLPT
Sbjct: 61  VAPSASITGNVHVGRSSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNV+VGHSAVLHGCTVEDEAFVG GATLLDGV VEKHAMVAAGALVRQNT+IP GEV
Sbjct: 121 IIGDNVSVGHSAVLHGCTVEDEAFVGTGATLLDGVCVEKHAMVAAGALVRQNTRIPSGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+FLRKLTEEEMAFISQSA+NY+NLA+VHAAENAK FDEIEFEK+L KKFARRDE
Sbjct: 181 WGGNPAKFLRKLTEEEMAFISQSALNYANLAQVHAAENAKGFDEIEFEKVLHKKFARRDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPKTA 271
           EY+SMLGVVRETP ELILP+N+M DK+PK A
Sbjct: 241 EYESMLGVVRETPPELILPNNMMPDKMPKAA 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538692|ref|XP_002510411.1| Protein yrdA, putative [Ricinus communis] gi|223551112|gb|EEF52598.1| Protein yrdA, putative [Ricinus communis]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/269 (89%), Positives = 258/269 (95%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLG+AIY+VGFWIRETGQALDRLGCR QG+YYFQEQLSRHRTLMNIFDKAP+V+KD F
Sbjct: 1   MGTLGRAIYTVGFWIRETGQALDRLGCRFQGSYYFQEQLSRHRTLMNIFDKAPMVDKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSASIIGDVQVG+G+SIWYGCVLRGDVNSIS+G+GTNIQDNSLVHVAKSNL+GKV+PT
Sbjct: 61  VAPSASIIGDVQVGKGASIWYGCVLRGDVNSISVGAGTNIQDNSLVHVAKSNLSGKVIPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGV VEKH MVAAGALVRQNTKIP GEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNTKIPAGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+FLRKLT+EE+AFISQSA NYSNLA+VHAAENAK FDEIEFEK+LRKKFARRDE
Sbjct: 181 WGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKPFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPK 269
           EYDSMLGVVRETP ELILPDNV+ DK  K
Sbjct: 241 EYDSMLGVVRETPPELILPDNVLPDKEQK 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082886|ref|XP_002306878.1| predicted protein [Populus trichocarpa] gi|222856327|gb|EEE93874.1| predicted protein [Populus trichocarpa]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/269 (88%), Positives = 257/269 (95%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLG+AIY+VGFW+RETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVV+KD F
Sbjct: 1   MGTLGRAIYAVGFWVRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +AP AS+IGDV VGRGSSIWYGCVLRGDVNSIS+GSGTNIQDNSLVHVAKSNL+GKVLPT
Sbjct: 61  VAPGASVIGDVLVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGV VEKHAMVAAGALVRQNT+IP GEV
Sbjct: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPTGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+FLRKLT+EE+AFI+QSA NYSNLA+VHAAENAK FDEIEFEK+LRKKFA++DE
Sbjct: 181 WGGNPAKFLRKLTDEEVAFIAQSATNYSNLAQVHAAENAKPFDEIEFEKVLRKKFAKKDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPK 269
           EYDSMLGVVRE P ELILP NV+ DK PK
Sbjct: 241 EYDSMLGVVRELPPELILPKNVLPDKEPK 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066191|ref|XP_002302024.1| predicted protein [Populus trichocarpa] gi|118486617|gb|ABK95146.1| unknown [Populus trichocarpa] gi|222843750|gb|EEE81297.1| predicted protein [Populus trichocarpa]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/266 (89%), Positives = 257/266 (96%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLG+AIY+VGFWIRETGQALDRLG RLQGNYYFQEQLSRHRTLMNIFDKAPVV+KD F
Sbjct: 1   MGTLGRAIYTVGFWIRETGQALDRLGGRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSAS+IGDVQVG+GSSIWYGCVLRGDVNSIS+GSGTNIQDNSLVHVAKSNL+GKVLPT
Sbjct: 61  VAPSASVIGDVQVGKGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVTVGHSAV+HGCTVEDEAFVGMGATLLDGV VEKHAMVAAGALVRQNT+IP GEV
Sbjct: 121 IIGDNVTVGHSAVVHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPTGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           WGGNPA+FLRKLT+EE+AFI+QSA NYSNLA+VHAAENAK FDEIEFEK+LRKKFA++DE
Sbjct: 181 WGGNPAKFLRKLTDEEIAFIAQSATNYSNLAQVHAAENAKPFDEIEFEKVLRKKFAKKDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDK 266
           EYDSMLGVVRE P ELILP+NV+ DK
Sbjct: 241 EYDSMLGVVRELPPELILPNNVLPDK 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2013104	275	GAMMA CA1 "gamma carbonic anhy	0.992	0.978	0.821	3.2e-120
TAIR|locus:2036741	278	GAMMA CA2 "gamma carbonic anhy	0.996	0.971	0.756	5.8e-114
TAIR|locus:2154840	258	GAMMA CA3 "gamma carbonic anhy	0.937	0.984	0.748	2e-104
DICTYBASE|DDB_G0288155	246	DDB_G0288155 "trimeric LpxA-li	0.878	0.967	0.396	1e-45
TIGR_CMR|NSE_0045	185	NSE_0045 "hexapeptide transfer	0.623	0.913	0.502	9.9e-39
TIGR_CMR|APH_1197	170	APH_1197 "hexapeptide transfer	0.575	0.917	0.484	1.6e-38
TIGR_CMR|ECH_1066	170	ECH_1066 "hexapeptide transfer	0.571	0.911	0.487	8.9e-38
TIGR_CMR|CJE_0280	182	CJE_0280 "transferase, hexapep	0.601	0.895	0.437	2.7e-36
TIGR_CMR|GSU_0020	179	GSU_0020 "hexapeptide transfer	0.619	0.938	0.461	2.4e-35
DICTYBASE|DDB_G0278597	276	DDB_G0278597 "bacterial transf	0.638	0.626	0.410	1.2e-33

TAIR|locus:2013104 GAMMA CA1 "gamma carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 221/269 (82%), Positives = 247/269 (91%)

Query:     1 MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
             MGTLG+A YSVGFWIRETGQALDRLGCRLQG  YF+EQLSRHRTLMN+FDKAP+V+K+ F
Sbjct:     1 MGTLGRAFYSVGFWIRETGQALDRLGCRLQGKNYFREQLSRHRTLMNVFDKAPIVDKEAF 60

Query:    61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
             +APSAS+IGDV +GRGSSIWYGCVLRGDVN++S+GSGTNIQDNSLVHVAKSNL+GKV PT
Sbjct:    61 VAPSASVIGDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKVHPT 120

Query:   121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
             IIGDNVT+GHSAVLHGCTVEDE F+GMGATLLDGV VEKH MVAAGALVRQNT+IP GEV
Sbjct:   121 IIGDNVTIGHSAVLHGCTVEDETFIGMGATLLDGVVVEKHGMVAAGALVRQNTRIPSGEV 180

Query:   181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
             WGGNPARFLRKLT+EE+AFISQSA NYSNLA+ HAAENAK  + IEFEK+LRKK A +DE
Sbjct:   181 WGGNPARFLRKLTDEEIAFISQSATNYSNLAQAHAAENAKPLNVIEFEKVLRKKHALKDE 240

Query:   241 EYDSMLGVVRETPAELILPDNVMQDKVPK 269
             EYDSMLG+VRETP EL LP+N++ DK  K
Sbjct:   241 EYDSMLGIVRETPPELNLPNNILPDKETK 269

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0004089 "carbonate dehydratase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2036741 GAMMA CA2 "gamma carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 208/275 (75%), Positives = 251/275 (91%)

Query:     1 MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
             MGTLG+AIY+VG WIR TGQALDR+G  LQG++  +E LSRHRTLMN+FDK+P+V+KDVF
Sbjct:     1 MGTLGRAIYTVGNWIRGTGQALDRVGSLLQGSHRIEEHLSRHRTLMNVFDKSPLVDKDVF 60

Query:    61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
             +APSAS+IGDVQ+G+GSSIWYGCVLRGDVN+IS+GSGTNIQDN+LVHVAK+N++GKVLPT
Sbjct:    61 VAPSASVIGDVQIGKGSSIWYGCVLRGDVNNISVGSGTNIQDNTLVHVAKTNISGKVLPT 120

Query:   121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
             +IGDNVTVGHSAV+HGCTVED+AFVGMGATLLDGV VEKHAMVAAG+LV+QNT+IP GEV
Sbjct:   121 LIGDNVTVGHSAVIHGCTVEDDAFVGMGATLLDGVVVEKHAMVAAGSLVKQNTRIPSGEV 180

Query:   181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
             WGGNPA+F+RKLT+EE+ +ISQSA NY NLA++HA+EN+KSF++IE E+ LRKK+AR+DE
Sbjct:   181 WGGNPAKFMRKLTDEEIVYISQSAKNYINLAQIHASENSKSFEQIEVERALRKKYARKDE 240

Query:   241 EYDSMLGVVRETPAELILPDNVMQD-----KVPKT 270
             +YDSMLG+ RETP ELILPDNV+       KVP T
Sbjct:   241 DYDSMLGITRETPPELILPDNVLPGGKPVAKVPST 275

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0004089 "carbonate dehydratase activity" evidence=ISS;IDA

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0009901 "anther dehiscence" evidence=IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0070207 "protein homotrimerization" evidence=IDA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2154840 GAMMA CA3 "gamma carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 196/262 (74%), Positives = 226/262 (86%)

Query:     1 MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
             MGT+GKA YSVGFWIRETGQALDRLGCRLQG  +F+EQLSRHRTLMN+FDK P V+K  F
Sbjct:     1 MGTMGKAFYSVGFWIRETGQALDRLGCRLQGKNHFREQLSRHRTLMNVFDKTPNVDKGAF 60

Query:    61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
             +AP+AS+ GDV VGRGSSIWYGCVLRGD NSIS+G+GTNIQDN+LVHVAK+NL+GKVLPT
Sbjct:    61 VAPNASLSGDVHVGRGSSIWYGCVLRGDANSISVGAGTNIQDNALVHVAKTNLSGKVLPT 120

Query:   121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
             +IGDNVT+GHSAVLHGCTVEDEA++G  AT+LDG +VEKHAMVA+GALVRQNT+IP GEV
Sbjct:   121 VIGDNVTIGHSAVLHGCTVEDEAYIGTSATVLDGAHVEKHAMVASGALVRQNTRIPSGEV 180

Query:   181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
             WGGNPA+FLRK+TEEE  F S SA+ YSNLA+ HA ENAK+ DE EF+KLL KK AR D 
Sbjct:   181 WGGNPAKFLRKVTEEERVFFSSSAVEYSNLAQAHATENAKNLDEAEFKKLLNKKNAR-DT 239

Query:   241 EYDSMLGVVRETPAELILPDNV 262
             EYDS+L        +L LP+NV
Sbjct:   240 EYDSVLD-------DLTLPENV 254

GO:0005737 "cytoplasm" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004089 "carbonate dehydratase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

DICTYBASE|DDB_G0288155 DDB_G0288155 "trimeric LpxA-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 96/242 (39%), Positives = 150/242 (61%)

Query:     6 KAIYSV-GFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPS 64
             K ++ + G  ++ TG  L R GC++QG+Y + E+L+RH  L    D AP+V +  F+AP+
Sbjct:     4 KGLFGILGEVVKNTGLILHRTGCKMQGDYAYVEKLNRHTRLTAFGDNAPIVGQKSFIAPN 63

Query:    65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD 124
             ASIIGDV +G+ SSIWY  VLRGDVNSI IG  T + D ++VH + +   G   PT IGD
Sbjct:    64 ASIIGDVVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLGPK-PTQIGD 122

Query:   125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGN 184
              V +G  +++H  T+  E+F+G G+TL DG  VEK+  + AG+L+     I  GE WGG+
Sbjct:   123 KVYIGPGSIVHAATILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGS 182

Query:   185 PARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDS 244
             PA+F+R++T+++ + + +      NL+  H  + +KS  E+  + L  +K+ +     D 
Sbjct:   183 PAKFIRQVTKDDESQLEKIIEQNINLSEQHEKQTSKSAKELNNDLL--QKYVKNRTRSDH 240

Query:   245 ML 246
             +L
Sbjct:   241 IL 242

GO:0016740 "transferase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|NSE_0045 NSE_0045 "hexapeptide transferase family protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 87/173 (50%), Positives = 117/173 (67%)

Query:    39 LSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGT 98
             LS   TL+ +    P      F+A +A +IG+V VG  SSIWYGC +RGDVN I+IGS T
Sbjct:     4 LSFTMTLLKLKGTFPSTADTYFIAENAFLIGNVTVGTRSSIWYGCNIRGDVNYINIGSYT 63

Query:    99 NIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVE 158
             NIQD +++HV+     G+   T IG+ VTVGH  +LH CT+ DE FVGMG+ ++DG  +E
Sbjct:    64 NIQDCTMIHVSH----GEKGHTEIGNYVTVGHQCLLHACTLMDETFVGMGSIIMDGAIME 119

Query:   159 KHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 211
               +MVAAG+LV  N +I  GE+W G PA+F+R LT EE++ I +SAI Y+ LA
Sbjct:   120 SGSMVAAGSLVTSNKRIKSGELWLGRPAKFVRILTAEEISHIRESAIRYAALA 172

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|APH_1197 APH_1197 "hexapeptide transferase family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 78/161 (48%), Positives = 115/161 (71%)

Query:    52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKS 111
             +P V+   F+A +A IIGDV +G+ +SIWYG VLRGDV+ I +G GTNIQDN++VH    
Sbjct:    12 SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHT--D 69

Query:   112 NLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
             ++ G    T+IG  VT+GHS +LH CT+ + AFVGMG+ ++D   +E+ +M+AAG+L+ +
Sbjct:    70 SMHGD---TVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTR 126

Query:   172 NTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR 212
                +  GE+W G PA+FLR +TEEE+ ++ +SA NY  L+R
Sbjct:   127 GKIVKSGELWAGRPAKFLRMMTEEEILYLQKSAENYIALSR 167

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|ECH_1066 ECH_1066 "hexapeptide transferase family protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 78/160 (48%), Positives = 112/160 (70%)

Query:    53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN 112
             P ++  VF+AP+A +IG+V + + +S+WY  VLRGDV  IS+G GTNIQDN+++HV ++ 
Sbjct:    12 PNIDSTVFVAPTAFVIGNVYISKDASVWYNSVLRGDVGMISVGEGTNIQDNTVIHVDRNY 71

Query:   113 LAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
               G    T IG  VTVGHS +LH C + D AFVGMG+ ++D V +E++ M+A+G+LV + 
Sbjct:    72 --GD---TQIGKMVTVGHSCILHACQIHDYAFVGMGSVVMDKVIMEENTMLASGSLVTKG 126

Query:   173 TKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR 212
               I  GE+W G PA+F R L+EEE+  I +SA NY  L+R
Sbjct:   127 KIIKSGELWAGRPAKFFRMLSEEEINHIKESASNYIQLSR 166

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|CJE_0280 CJE_0280 "transferase, hexapeptide repeat family" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 74/169 (43%), Positives = 112/169 (66%)

Query:    45 LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNS 104
             L+   + +P + ++VF+A  A IIG++++G  SSIW+ CVLR DVN I IG  TNIQD S
Sbjct:     2 LIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRADVNFIKIGKRTNIQDLS 61

Query:   105 LVHV------AKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVE 158
              VHV       K  L     PTIIGD+VT+GH+ V+H C +++   +GM A ++D   +E
Sbjct:    62 TVHVWHREFDKKGKLKDAGFPTIIGDDVTIGHNCVIHACVIKNRVLIGMNAVIMDSALIE 121

Query:   159 KHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY 207
             + ++V AG++V +  K P   +  GNPA+F+R+L +EE++F+ QSA+NY
Sbjct:   122 EDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEVSFLKQSALNY 170

GO:0008152 "metabolic process" evidence=ISS

GO:0016740 "transferase activity" evidence=ISS

TIGR_CMR|GSU_0020 GSU_0020 "hexapeptide transferase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 78/169 (46%), Positives = 111/169 (65%)

Query:    52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA-K 110
             +P ++   F+A +A +IGDV +G  SSIWY  V RGDVN I IG+ +NIQD S++HV  K
Sbjct:     9 SPQIDPSAFIADTAVVIGDVTIGPESSIWYNVVARGDVNFIRIGARSNIQDLSMLHVTHK 68

Query:   111 SNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
              +      P +IGD+VTVGHS  LHGCT+ + AF+GM A ++D   V + A+V A ALV 
Sbjct:    69 KHADDPGAPLVIGDDVTVGHSVTLHGCTIGNGAFIGMQAMVMDKAVVGEGALVGARALVT 128

Query:   171 QNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENA 219
             + T IP   +W G PA++ R LT +E+A++ +SA NY   +R +  E+A
Sbjct:   129 EGTVIPPHTLWVGAPAKYKRDLTPDEIAWLKRSAGNYVRYSREYLEEDA 177

GO:0008152 "metabolic process" evidence=ISS

DICTYBASE|DDB_G0278597 DDB_G0278597 "bacterial transferase hexapeptide repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 76/185 (41%), Positives = 115/185 (62%)

Query:    34 YFQEQLSRHRTLMNIFDKAPVVNKDV----------FLAPSASIIGDVQVGRGSSIWYGC 83
             YF +  ++H+T +  FDK  +    +          F+APSASIIG+V +G GSS+W  C
Sbjct:    54 YF-DLYNKHKTFVPFFDKNSITTPAITGLYPREGGEFVAPSASIIGNVNLGVGSSVWDNC 112

Query:    84 VLRGDVNSISIGSGTNIQDNSLVHVAKSNLA-GKVLPTIIGDNVTVGHSAVLHGCTVEDE 142
             V+R DVN I IG+ TN+QD +++  A   ++      TIIGD VT+GHS +L  CTVE+ 
Sbjct:   113 VIRADVNYIHIGAFTNVQDGTIIREANEPISLDHNGSTIIGDQVTIGHSCILEACTVEEN 172

Query:   143 AFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQ 202
               +GMG+ L    YVE ++++ + +++ + ++I  GE+W G PA+F+R LTE E   IS 
Sbjct:   173 CLIGMGSILEPESYVEANSILGSNSILTKGSRIKSGELWVGKPAKFVRNLTENEKIDISN 232

Query:   203 SAINY 207
             SA +Y
Sbjct:   233 SAHSY 237

GO:0016740 "transferase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C6B3	GCA2_ARATH	4, ., 2, ., 1, ., -	0.7563	0.9963	0.9712	no	no
Q54JC2	Y2881_DICDI	No assigned EC number	0.4025	0.8597	0.9471	yes	no
Q94AU7	GCA3_ARATH	4, ., 2, ., 1, ., -	0.7343	0.9520	1.0	no	no
Q9FWR5	GCA1_ARATH	4, ., 2, ., 1, ., -	0.8215	0.9926	0.9781	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.57.332.1 carbonate dehydratase (EC-4.2.1.1) (270 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
PLN02296	269	PLN02296, PLN02296, carbonate dehydratase	0.0
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	2e-84
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	2e-68
PLN02472	246	PLN02472, PLN02472, uncharacterized protein	1e-46
cd04650	154	cd04650, LbH_FBP, Ferripyochelin Binding Protein (	5e-43
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	5e-37
TIGR02287	192	TIGR02287, PaaY, phenylacetic acid degradation pro	1e-31
PRK13627	196	PRK13627, PRK13627, carnitine operon protein CaiE;	4e-26
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	7e-21
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	1e-17
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	7e-17
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	5e-15
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	1e-14
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	2e-11
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	2e-11
TIGR03532	231	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6	7e-11
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	9e-09
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	4e-08
cd03349	145	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT)	2e-07
cd03350	139	cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyri	6e-07
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	1e-06
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	1e-06
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	2e-06
cd05825	107	cd05825, LbH_wcaF_like, wcaF-like: This group is c	2e-06
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	4e-06
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	5e-06
cd03357	169	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase	8e-06
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	1e-05
PLN02739	355	PLN02739, PLN02739, serine acetyltransferase	1e-05
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	2e-05
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	3e-05
TIGR02353	695	TIGR02353, NRPS_term_dom, non-ribosomal peptide sy	3e-05
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	4e-05
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	5e-05
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	8e-05
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	8e-05
PRK10092	183	PRK10092, PRK10092, maltose O-acetyltransferase; P	8e-05
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	2e-04
COG2171	271	COG2171, DapD, Tetrahydrodipicolinate N-succinyltr	2e-04
TIGR03308	204	TIGR03308, phn_thr-fam, phosphonate metabolim prot	2e-04
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	2e-04
PRK09677	192	PRK09677, PRK09677, putative lipopolysaccharide bi	2e-04
TIGR02353	695	TIGR02353, NRPS_term_dom, non-ribosomal peptide sy	4e-04
PLN02694	294	PLN02694, PLN02694, serine O-acetyltransferase	5e-04
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	6e-04
PRK10502	182	PRK10502, PRK10502, putative acyl transferase; Pro	7e-04
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	8e-04
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	8e-04
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	0.001
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	0.002
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	0.002
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	0.002

>gnl|CDD|215167 PLN02296, PLN02296, carbonate dehydratase

 Score =  575 bits (1485), Expect = 0.0
 Identities = 244/269 (90%), Positives = 261/269 (97%)

Query: 1   MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVF 60
           MGTLG+AIY+VGFWIRETGQALDRLGCRLQGNYYF+EQLSRHRTLMNIFDKAPVV+KD F
Sbjct: 1   MGTLGRAIYTVGFWIRETGQALDRLGCRLQGNYYFREQLSRHRTLMNIFDKAPVVDKDAF 60

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
           +APSAS+IGDVQVGRGSSIWYGCVLRGDVNSIS+GSGTNIQDNSLVHVAK+NL+GKVLPT
Sbjct: 61  VAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPT 120

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IIGDNVT+GHSAVLHGCTVEDEAFVGMGATLLDGV VEKHAMVAAGALVRQNT+IP GEV
Sbjct: 121 IIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEV 180

Query: 181 WGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240
           W GNPA+FLRKLTEEE+AFISQSA NYSNLA+VHAAENAKSFDEIEFEK+LRKKFARRDE
Sbjct: 181 WAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240

Query: 241 EYDSMLGVVRETPAELILPDNVMQDKVPK 269
           EYDSMLGVVRETP ELILPDN++ DK PK
Sbjct: 241 EYDSMLGVVRETPPELILPDNILPDKAPK 269

Length = 269

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score =  248 bits (637), Expect = 2e-84
 Identities = 83/159 (52%), Positives = 112/159 (70%), Gaps = 6/159 (3%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL 113
            ++   F+AP+A++IGDV +G GSS+W+G VLRGDVN I IG  TNIQD S++HV     
Sbjct: 1   EIDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGY- 59

Query: 114 AGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT 173
                PTIIGDNVTVGH AVLHGCT+ D   +GMGA +LDG  + K ++VAAG+LV    
Sbjct: 60  -----PTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGK 114

Query: 174 KIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR 212
            IP G +  G+PA+ +R+LT+EE+A + +SA +Y  LA+
Sbjct: 115 VIPPGSLVAGSPAKVVRELTDEEIAELRESAEHYVELAK 153

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score =  208 bits (533), Expect = 2e-68
 Identities = 77/167 (46%), Positives = 109/167 (65%), Gaps = 6/167 (3%)

Query: 50  DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA 109
             +P ++   F+APSA++IGDV++G G SIW G VLRGDV  I IG+ TNIQD  ++H  
Sbjct: 9   GLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHAD 68

Query: 110 KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169
                    P  IGD+VT+GH AV+HGCT+ D   +GMGAT+LDG  +   ++V AGALV
Sbjct: 69  PGY------PVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALV 122

Query: 170 RQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAA 216
               +IP G +  G+PA+ +R L +EE+A++ ++A NY  LA  + A
Sbjct: 123 TPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAENYVKLADRYLA 169

Length = 176

>gnl|CDD|215263 PLN02472, PLN02472, uncharacterized protein

 Score =  155 bits (394), Expect = 1e-46
 Identities = 71/194 (36%), Positives = 117/194 (60%), Gaps = 2/194 (1%)

Query: 43  RTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQD 102
           R ++ +    P V  D ++AP+  + G V V  G+S+W G VLRGD+N I++G  +N+Q+
Sbjct: 50  RQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQE 109

Query: 103 NSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAM 162
             ++H A ++  G    T+I   VT+G  ++L  CT+E E  +G  + L++G  VE H++
Sbjct: 110 RCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSI 169

Query: 163 VAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAK-S 221
           + AG+++    +IP GE+W GNPARF+R LT EE   I + A+  ++L++ H +E    S
Sbjct: 170 LEAGSVLPPGRRIPTGELWAGNPARFVRTLTNEETLEIPKLAVAINDLSQSHFSEFLPYS 229

Query: 222 FDEIEFEKLLRKKF 235
              +E EK L+K  
Sbjct: 230 TAYLEVEK-LKKSL 242

Length = 246

>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

 Score =  143 bits (362), Expect = 5e-43
 Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 6/160 (3%)

Query: 53  PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN 112
           P ++   ++ P++ +IGDV +G  +S+W+  V+RGD +SI IG  +N+Q+N  +H     
Sbjct: 1   PRISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHG- 59

Query: 113 LAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
                 PT IGD VT+GH+AV+HG  V +   VGMGA LL+G  +  H ++ AGA+V   
Sbjct: 60  -----YPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114

Query: 173 TKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR 212
            +IP   +  G PA+ +RKLTEEE+ +I ++A  Y  LA 
Sbjct: 115 KEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNAEEYVELAE 154

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. Length = 154

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score =  127 bits (322), Expect = 5e-37
 Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 6/160 (3%)

Query: 53  PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN 112
           PVV+   F+ P+A +IGDV +G+   I     LRGD   I I  G N+QDN ++H     
Sbjct: 1   PVVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHG---- 56

Query: 113 LAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
                  T++ +N  +GH A+LHGCT+   A VGM A ++DG  + + ++V A A V+  
Sbjct: 57  --FPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAG 114

Query: 173 TKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR 212
           T IP   +  G+PA+ +R+L++EE+A+ ++    Y  LA 
Sbjct: 115 TVIPPRSLIAGSPAKVIRELSDEEVAWKTRGTKEYQQLAA 154

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY

 Score =  114 bits (288), Expect = 1e-31
 Identities = 59/159 (37%), Positives = 95/159 (59%), Gaps = 6/159 (3%)

Query: 53  PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN 112
           PVV+ + ++ P+A +IGDV +G+   +     LRGD   I +  G NIQDN ++H     
Sbjct: 9   PVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMH----G 64

Query: 113 LAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
             G+   T++ +N  VGH A+LHGC V   A VGM A ++DG  + ++++VAA A V+  
Sbjct: 65  FPGQ--DTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAG 122

Query: 173 TKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 211
            ++P   +  G+PA+ +R+L+E+E+A+  Q    Y  LA
Sbjct: 123 AEMPAQYLVVGSPAKVIRELSEQELAWKKQGTHEYQVLA 161

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator [Energy metabolism, Other]. Length = 192

>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional

 Score =  101 bits (252), Expect = 4e-26
 Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 6/159 (3%)

Query: 53  PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN 112
           PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G N+QD  ++H     
Sbjct: 11  PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD- 69

Query: 113 LAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
                  TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+  
Sbjct: 70  -----TDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAG 124

Query: 173 TKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 211
            +    ++  G PAR +R ++++E+ +   +   Y +L 
Sbjct: 125 FQGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLV 163

Length = 196

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 86.1 bits (214), Expect = 7e-21
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 20/135 (14%)

Query: 51  KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-NSISIGSGTNIQDNSLVHVA 109
             PV++   ++ P+A +IGDV +G    +  G  +R D    I IG+  NIQD  ++H A
Sbjct: 1   DEPVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIH-A 59

Query: 110 KSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLL-----DGVYVEKHAMV 163
               +       IG NV++ H A++HG   + D  F+G  + +      D   +  +A+V
Sbjct: 60  LEGYS-----VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVV 114

Query: 164 AAGALVRQNTKIPCG 178
                     +IP G
Sbjct: 115 -------DGVEIPPG 122

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 77.9 bits (193), Expect = 1e-17
 Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 18/127 (14%)

Query: 63  PSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV-HVAKSNLAGKVLPTI 121
           PSA +     +G G+ I  G V+  DV    IG    I   ++V H             +
Sbjct: 83  PSAIVSPSASIGEGTVIMAGAVINPDV---RIGDNVIINTGAIVEH-----------DCV 128

Query: 122 IGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
           IGD V +     L G   + +  F+G GAT++ GV +   A+V AGA+V ++  IP G V
Sbjct: 129 IGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAVVGAGAVVTKD--IPDGGV 186

Query: 181 WGGNPAR 187
             G PA+
Sbjct: 187 VVGVPAK 193

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 74.1 bits (183), Expect = 7e-17
 Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 40/141 (28%)

Query: 68  IGD-VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV 126
           IGD   +G    I              IG    IQ N  V + +           I D+V
Sbjct: 1   IGDNCIIGTNVFIENDVK---------IGDNVKIQSN--VSIYE--------GVTIEDDV 41

Query: 127 TVGHSAV----------------LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
            +G + V                L G TV+  A +G  AT+L GV + ++A+V AGA+V 
Sbjct: 42  FIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVV- 100

Query: 171 QNTK-IPCGEVWGGNPARFLR 190
             TK +P   +  GNPAR + 
Sbjct: 101 --TKDVPPYALVVGNPARIIG 119

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 71.4 bits (176), Expect = 5e-15
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 18/129 (13%)

Query: 59  VFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISIGSGTNIQDNSLVHVAKSNLAGKV 117
             + PSA +     +G G  I  G V    +N    IG    I  N+   +         
Sbjct: 85  TLIHPSAVVSPSAVIGEGCVIMAGAV----INPDARIGDNVII--NTGAVIGHD------ 132

Query: 118 LPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIP 176
              +IGD V +    VL G  T+ + AF+G GAT++ GV +   A++ AGA+V ++  +P
Sbjct: 133 --CVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VP 188

Query: 177 CGEVWGGNP 185
            G V  GNP
Sbjct: 189 DGSVVVGNP 197

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 67.9 bits (167), Expect = 1e-14
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 36/133 (27%)

Query: 67  IIGD-VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV----HVAKS-----NLAGK 116
            IGD V +G G  I            I+IG    I  N  +    H              
Sbjct: 3   SIGDNVYIGPGCVIS-------AGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVT 55

Query: 117 VLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIP 176
             P +IGD+V                 ++G    +L GV +   A+V AG++V ++  +P
Sbjct: 56  SAPIVIGDDV-----------------WIGANVVILPGVTIGDGAVVGAGSVVTKD--VP 96

Query: 177 CGEVWGGNPARFL 189
              +  GNPA+ +
Sbjct: 97  PNSIVAGNPAKVI 109

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 11/131 (8%)

Query: 66  SIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN 125
               ++ +G    I    V+      I+IG    +  N  V +  ++  G  +   IG  
Sbjct: 63  LGEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPN--VTIYTNSHPGDFVTANIGAL 119

Query: 126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP 185
           V  G        T+ ++ ++G GA +L GV + + A++ AG++V ++  +P   +  GNP
Sbjct: 120 VGAG------PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKD--VPPYGIVAGNP 171

Query: 186 ARFLRKLTEEE 196
           AR +RK     
Sbjct: 172 ARVIRKRDVVA 182

Length = 190

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 71  VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH 130
           V +G G  I    V+RG V    IG   NI   +++  A         PTIIGDNV +G 
Sbjct: 1   VFIGEGVKIHPKAVIRGPV---VIGDNVNIGPGAVIGAATGPNEKN--PTIIGDNVEIGA 55

Query: 131 SAVLHG-CTVEDEAFVGMGATLL 152
           +AV+HG   + D A +G GA + 
Sbjct: 56  NAVIHGGVKIGDNAVIGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

 Score = 60.2 bits (146), Expect = 7e-11
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 24/141 (17%)

Query: 63  PSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTII 122
           P A I   V +G  + I  G V+  ++ +  IG GT I  N++       L G+     +
Sbjct: 91  PGAIIRDQVIIGDNAVIMMGAVI--NIGAE-IGEGTMIDMNAV-------LGGR---ATV 137

Query: 123 GDNVTVGHSAVLHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT 173
           G NV +G  AVL G           +ED   +G  A +L+GV V K A+VAAGA+V ++ 
Sbjct: 138 GKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED- 196

Query: 174 KIPCGEVWGGNPARFLRKLTE 194
            +P   V  G PA+ ++++ E
Sbjct: 197 -VPPNTVVAGVPAKVIKQVDE 216

This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. Length = 231

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 82  GCVLRGDVNSISIGSGTNIQDNSLVH--VAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTV 139
             ++RGD+ ++SIG    + +  ++     K +      P  IGD V +G + V++   +
Sbjct: 33  DVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQI 92

Query: 140 ------EDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT 193
                      +G    + D V +        G +V  +T IP   V  G PARF+ +L 
Sbjct: 93  GSYVHIGKNCVIGRRCIIKDCVKILD------GTVVPPDTVIPPYSVVSGRPARFIGELP 146

Query: 194 EEEMAFISQSAINY 207
           E     + +    Y
Sbjct: 147 ECTQELMEEETKEY 160

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 19/123 (15%)

Query: 67  IIGD-VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN 125
           IIGD V++G  +      + RG +    IG GT I DN LV +A +          IG+N
Sbjct: 94  IIGDDVEIGANT-----TIDRGALGDTVIGDGTKI-DN-LVQIAHN--------VRIGEN 138

Query: 126 -VTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGN 184
            +      +    T+ D   +G    +   + +    ++ AG+ V     +P GE   G 
Sbjct: 139 CLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSI--VPPGEYVSGT 196

Query: 185 PAR 187
           PA+
Sbjct: 197 PAQ 199

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 21/81 (25%)

Query: 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IPC 177
             IIG++V                 ++G GAT+L GV +   A++AAGA+V   TK +P 
Sbjct: 73  DVIIGNDV-----------------WIGHGATILPGVTIGDGAVIAAGAVV---TKDVPP 112

Query: 178 GEVWGGNPARFLRKLTEEEMA 198
             + GGNPA+ +R   +EE  
Sbjct: 113 YAIVGGNPAKVIRYRFDEETI 133

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Length = 145

>gnl|CDD|100041 cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 19/91 (20%)

Query: 94  IGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG---------CTVEDEAF 144
           +  GT +   + V               IG NV +   AV+ G           +ED+ F
Sbjct: 34  VDEGTMVDSWATVGSC----------AQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVF 83

Query: 145 VGMGATLLDGVYVEKHAMVAAGALVRQNTKI 175
           +G    +++GV V K A++AAG ++ Q+T I
Sbjct: 84  IGANCEVVEGVIVGKGAVLAAGVVLTQSTPI 114

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. Length = 139

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 43/167 (25%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLR-----------------GDVNSI---- 92
            +     +     I G   +G+ + I+    +                  GD N+I    
Sbjct: 31  EIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFV 90

Query: 93  SIGSGTN-------IQDNSL----VHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVE 140
           +I  GT        I +N+L    VHVA           +IG+NV + ++A L G   + 
Sbjct: 91  TIHRGTAQGGGVTRIGNNNLLMAYVHVAHD--------CVIGNNVILANNATLAGHVEIG 142

Query: 141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPAR 187
           D A +G  + +     + +HAMV  G+ V Q+   P      GN AR
Sbjct: 143 DYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDV-PPYVIA-AGNRAR 187

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 25/110 (22%)

Query: 69  GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTV 128
           GDV++G    I  G +L G      IG    I  N ++             + IGD V +
Sbjct: 14  GDVEIGVDVVIDPGVILEGKT---VIGEDCVIGPNCVI-----------KDSTIGDGVVI 59

Query: 129 GHSAVLHGCTVEDEAFVG------MGATLLDGV----YVE-KHAMVAAGA 167
             S+V+ G  + + A VG       G  L +GV    +VE K + +  G+
Sbjct: 60  KASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGS 109

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 14/125 (11%)

Query: 61  LAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISIGSGTNIQDNSLVHVAKS 111
           + P A I+G  ++G+ + I  G V+         +G+ + + IG    I++   +H  + 
Sbjct: 38  IGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH--RG 95

Query: 112 NLAGKVLPTIIG-DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
              G V  T IG DN+ + +S V H C + +   +  GA L   V V   A+++   LV 
Sbjct: 96  TKGGGV--TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVH 153

Query: 171 QNTKI 175
           Q  +I
Sbjct: 154 QFCRI 158

Length = 255

>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the protein product of the E

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 30/116 (25%)

Query: 92  ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCT------------- 138
           ++IG  + I +   ++    NLA    P  IG +  +   A L  CT             
Sbjct: 4   LTIGDNSWIGEGVWIY----NLA----PVTIGSDACISQGAYL--CTGSHDYRSPAFPLI 53

Query: 139 -----VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL 189
                + D A+V   A +  GV + + A+V A ++V ++  +P   V+ GNPA  +
Sbjct: 54  TAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD--LPAWTVYAGNPAVPV 107

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. Length = 107

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 52/191 (27%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLR-----------------GDVNSI---- 92
            +   V L     I+G   +G G+ I+ G V+                  GD N+I    
Sbjct: 30  KIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGEKTRLIIGDNNTIREFV 89

Query: 93  SIGSG-------TNIQDNSL----VHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVE 140
           +I  G       T I +N+L     H+A           ++G++V + ++A L G   V 
Sbjct: 90  TINRGTASGGGVTRIGNNNLLMAYSHIAHD--------CVVGNHVILANNATLAGHVEVG 141

Query: 141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL---------RK 191
           D A +G    +   V + ++AM+   + V ++   P      GN AR           R 
Sbjct: 142 DYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDV-PPYCLAE-GNRARLRGLNIVGLRRRG 199

Query: 192 LTEEEMAFISQ 202
            + EE+  I +
Sbjct: 200 FSREEITAIKR 210

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 15/138 (10%)

Query: 39  LSRHRTLMNIFDKAP--VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGS 96
           L  +  L+    K+P   + + V +  SA IIG V +G G+ I  G ++        IG 
Sbjct: 228 LEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYT---VIGE 284

Query: 97  GTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVED-----EAFVGMGATL 151
           G  I +   V +  S +   V   +IG    +G S +   C +       +  +G+ + +
Sbjct: 285 GVTIGNG--VEIKNSIIMDNV---VIGHGSYIGDSIIGENCKIGASLIIGDVVIGINSEI 339

Query: 152 LDGVYVEKHAMVAAGALV 169
           L GV V   ++V +G + 
Sbjct: 340 LPGVVVGPGSVVESGEIE 357

Length = 358

>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

 Score = 44.7 bits (107), Expect = 8e-06
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 48/133 (36%)

Query: 73  VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV---TVG 129
           +G      + C +  DV  ++IG      DN                 +IG NV   T G
Sbjct: 65  IGDNFYANFNCTIL-DVAPVTIG------DN----------------VLIGPNVQIYTAG 101

Query: 130 HS--------------AVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK- 174
           H                +    T+ D  ++G G  +L GV +  ++++ AG++V   TK 
Sbjct: 102 HPLDPEERNRGLEYAKPI----TIGDNVWIGGGVIILPGVTIGDNSVIGAGSVV---TKD 154

Query: 175 IPCGEVWGGNPAR 187
           IP   V  GNPAR
Sbjct: 155 IPANVVAAGNPAR 167

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 169

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 120 TIIGDNVTVGHSAVL--------HGC-TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
            +IGDN T+     L            T+ D   +G GA +L  + +  +  + A A+V 
Sbjct: 29  AVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88

Query: 171 QNTKIPCGEVWGGNP 185
           ++  +P      G P
Sbjct: 89  KD--VPANSTVVGVP 101

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|215394 PLN02739, PLN02739, serine acetyltransferase

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 11/85 (12%)

Query: 121 IIGDNVTVGHSAVLHGCTVE---------DEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
           +IGD V++ H   L G   E         D A +G   T+L  + +   AMVAAG+LV +
Sbjct: 233 VIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLK 292

Query: 172 NTKIPCGEVWGGNPARFLRKLTEEE 196
           +  +P   +  GNPA+ +  + E++
Sbjct: 293 D--VPSHSMVAGNPAKLIGFVDEQD 315

Length = 355

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 24/132 (18%)

Query: 55  VNKDVFLA------PSASIIG-DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVH 107
           +N+++ LA      P  + I   V +GR ++I+ G  + GD     IG G  I+   ++ 
Sbjct: 246 INRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDT---RIGEGCTIEQGVVIK 302

Query: 108 VAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGA 167
             +           IGD+VTV   +VL    V D+  +G  A L  G  +  H  V  G 
Sbjct: 303 GCR-----------IGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH--VKIGN 349

Query: 168 LVRQNTKIPCGE 179
            V +  KI  GE
Sbjct: 350 FV-ETKKIVMGE 360

Length = 459

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 39/162 (24%), Positives = 58/162 (35%), Gaps = 41/162 (25%)

Query: 58  DVFLAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISIGSGTNIQDNSLVHV 108
              +     I G   +G+ + I+    +         +G+   + IG    I++   ++ 
Sbjct: 38  GTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINR 97

Query: 109 AKSNLAGKVLPTIIGDN------VTVGH------------SAVLHG-CTVEDEAFVGMGA 149
                 G    T IGDN      V V H            +A L G   V D A +G G 
Sbjct: 98  GTVQGGGV---TRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIG-GL 153

Query: 150 TLLDGVY----VEKHAMVAAGALVRQNTKIPCGEVWGGNPAR 187
           T    V+    +  HAMV   + V Q+   P      GNPAR
Sbjct: 154 T---AVHQFVRIGAHAMVGGMSGVSQDV-PPYVLAE-GNPAR 190

Length = 262

>gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 122 IGDNVTVGHSAVLHG------------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169
           IG    V    +L G             T+  +AF+G  +TL     +   A +  G+ +
Sbjct: 134 IGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSAL 193

Query: 170 RQNTKIPCGEVWGGNPA 186
           +    IP GE W G+PA
Sbjct: 194 QGGQSIPDGERWHGSPA 210

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 43/167 (25%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLR-----------------GDVNSI---- 92
            +     L     + G   +GR + I+    +                  GD N+I    
Sbjct: 35  EIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFV 94

Query: 93  SIGSG-------TNIQDNSL----VHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVE 140
           +I  G       T I DN+L     HVA           +IG+N  + ++A L G   V 
Sbjct: 95  TIHRGTVQGGGVTRIGDNNLIMAYAHVAHD--------CVIGNNCILANNATLAGHVEVG 146

Query: 141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPAR 187
           D A +G  + +   V +  HAM+   + V Q+   P      GN AR
Sbjct: 147 DYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDV-PPYVIAS-GNHAR 191

Length = 260

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 16/91 (17%)

Query: 57  KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGK 116
            DV + P   + G   +G    I   CV++       IG G  I+ +S++  A       
Sbjct: 20  VDVVIDPGVILEGKTVIGEDCVIGPNCVIKDST----IGDGVVIKASSVIEGA------- 68

Query: 117 VLPTIIGDNVTVGHSAVLH-GCTVEDEAFVG 146
               +IG+  TVG  A L  G  + +   +G
Sbjct: 69  ----VIGNGATVGPFAHLRPGTVLGEGVHIG 95

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 18/87 (20%)

Query: 94  IGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLD 153
           IG GT+I + + +     N       ++IG N  +G + V+        +++    T+ D
Sbjct: 2   IGRGTSIGEGTTI----KN-------SVIGRNCKIGKNVVIDN------SYIWDDVTIED 44

Query: 154 GVYVEKHAMVAAGALVRQNTKIPCGEV 180
           G  +  H++VA GA++ +   IP G +
Sbjct: 45  GCTIH-HSIVADGAVIGKGCTIPPGSL 70

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 73  VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA 132
           +GRG+SI  G  ++   NS+ IG    I  N  V +  S          I D+VT+    
Sbjct: 2   IGRGTSIGEGTTIK---NSV-IGRNCKIGKN--VVIDNS---------YIWDDVTIEDGC 46

Query: 133 VLHGCTVEDEAFVGMGATLLDGV 155
            +H   V D A +G G T+  G 
Sbjct: 47  TIHHSIVADGAVIGKGCTIPPGS 69

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 19/74 (25%)

Query: 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178
           P  IG+NV +G  AV++                  GV +  + +VA+GA+V ++  +P  
Sbjct: 129 PVTIGNNVWIGGRAVIN-----------------PGVTIGDNVVVASGAVVTKD--VPDN 169

Query: 179 EVWGGNPARFLRKL 192
            V GGNPAR ++KL
Sbjct: 170 VVVGGNPARIIKKL 183

Length = 183

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 57  KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGK 116
           ++V + P   +   V++G G  +    V+ G     +IG GT I   +++     +L  K
Sbjct: 15  ENVEIGPFCIVGPGVKIGDGVELKSHVVILGHT---TIGEGTRIFPGAVIGGVPQDLKYK 71

Query: 117 VLPT--IIGDNVT-------------------VG-------HSAVLHGCTVEDEAFVGMG 148
              T  IIGDN T                   +G       +S + H C V +   +   
Sbjct: 72  GEKTRLIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANN 131

Query: 149 ATLLDGVYVEKHAMVAAGALVRQNTKI 175
           ATL   V V  +A++     V Q  +I
Sbjct: 132 ATLAGHVEVGDYAIIGGLVAVHQFVRI 158

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 121 IIGDNVTVGHSAVLHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
            +G N  +G  A + G           + D   +G  + +++GV V    +VAAG  + Q
Sbjct: 158 QVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQ 217

Query: 172 NTKI 175
           +TKI
Sbjct: 218 DTKI 221

Length = 271

>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase hexapeptide repeat family

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP 185
           VT+GH           + ++G GA +L GV +   A++AAGA+V ++  +    +  G P
Sbjct: 109 VTIGH-----------DVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGVP 155

Query: 186 ARFLRKLTEEEMA 198
           A+ +R+    E+A
Sbjct: 156 AKLIRRRFPPEIA 168

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. Length = 204

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 14/134 (10%)

Query: 47  NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV 106
            I +   ++  +   +    I  DV VG  S +  G VL+    S+ IG+   I+ +++ 
Sbjct: 292 EIGNNVKIIRSECEKS---VIEDDVSVGPFSRLREGTVLK---KSVKIGNFVEIKKSTIG 345

Query: 107 HVAKSNLAGKVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVE 158
              K+     +    +G NV +G   +         +   +ED AF+G  ++L+  V + 
Sbjct: 346 ENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIG 405

Query: 159 KHAMVAAGALVRQN 172
           K A++ AG+++ ++
Sbjct: 406 KGALIGAGSVITED 419

Length = 448

>gnl|CDD|137467 PRK09677, PRK09677, putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 17/142 (11%)

Query: 58  DVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV----HVAKSNL 113
           D F         +VQV     I   C+      SI+IG  T I     +    H +  + 
Sbjct: 59  DAFGRGKLFFGDNVQVNDYVHI--ACI-----ESITIGRDTLIASKVFITDHNHGSFKHS 111

Query: 114 AGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT 173
                P +  D  T+  SAV+ G       ++G   T+L GV +    +V A ++V ++ 
Sbjct: 112 DDFSSPNLPPDMRTLESSAVVIG----QRVWIGENVTILPGVSIGNGCIVGANSVVTKS- 166

Query: 174 KIPCGEVWGGNPARFLRKLTEE 195
            IP   V  GNPA+ ++K   E
Sbjct: 167 -IPENTVIAGNPAKIIKKYNHE 187

Length = 192

>gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 122 IGDNVTVGHSAVLHGCTVEDEAF------VGMGATLLDGVYVEKHAMVAAGA------LV 169
           IGD+ T+   +V+     ED         +G GATL  G  V    ++  G+      LV
Sbjct: 619 IGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLV 678

Query: 170 RQNTKIPCGEVWGGNPA 186
            +  ++P    W GNPA
Sbjct: 679 MKGEEVPAHTRWRGNPA 695

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695

>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 88  DVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGC---------T 138
           DV ++ I     I    L   A   + G+    +IG+NV++ H   L G           
Sbjct: 157 DVFAVDIHPAAKIGKGILFDHATGVVIGET--AVIGNNVSILHHVTLGGTGKACGDRHPK 214

Query: 139 VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL 189
           + D   +G GAT+L  V + + A + AG++V     +P      GNPAR +
Sbjct: 215 IGDGVLIGAGATILGNVKIGEGAKIGAGSVVL--IDVPPRTTAVGNPARLV 263

Length = 294

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 67/169 (39%)

Query: 63  PSASIIG-DVQVGRGSSIWYGCVLRGD---------------VNSISIGSGTNIQDNSLV 106
           P ++ I  DV++G  + I  G V++G+               V+S  IG G  I  NS++
Sbjct: 257 PESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDST-IGDGVTIT-NSVI 314

Query: 107 HVAKSNLAGKVLP-------TIIGDNVTVG------------HSAVLH------------ 135
             +K      V P       ++IG+ V +G             + V H            
Sbjct: 315 EESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGEN 374

Query: 136 ---GC---------------TVEDEAFVGMGATLLDGVYVEKHAMVAAG 166
              GC                + D AF+G  + L+  V V  +A +AAG
Sbjct: 375 VNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAG 423

Length = 458

>gnl|CDD|236703 PRK10502, PRK10502, putative acyl transferase; Provisional

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 35/138 (25%)

Query: 76  GSSIWYGCVLRGDVN-----SISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH 130
           G+ I  G V+R  V       ++IG    I D+    V   NL        IG +  +  
Sbjct: 51  GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDD----VWLYNLG----EITIGAHCVISQ 102

Query: 131 SAVLHGCT------------------VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
            + L  CT                  + +  ++     +  GV +   A+V A + V ++
Sbjct: 103 KSYL--CTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS 160

Query: 173 TKIPCGEVWGGNPARFLR 190
             +P   +  GNPA  +R
Sbjct: 161 --LPANTICRGNPAVPIR 176

Length = 182

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178
           P +IGDNV +G  AV+   T  +E        + D V +  +A++  G  +  N  I  G
Sbjct: 18  PVVIGDNVNIGPGAVIGAATGPNEKN---PTIIGDNVEIGANAVIHGGVKIGDNAVIGAG 74

Query: 179 EV 180
            V
Sbjct: 75  AV 76

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 39.7 bits (94), Expect = 8e-04
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 30/123 (24%)

Query: 45  LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNS 104
           L  +FD     +    + PSA I    ++G G SI    V         IG+G  I D  
Sbjct: 87  LAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAV---------IGAGVVIGDGV 137

Query: 105 LVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVA 164
           ++       AG     +IGD V +G    LH              T+   V +    ++ 
Sbjct: 138 VIG------AG----AVIGDGVKIGADCRLHA-----------NVTIYHAVRIGNRVIIH 176

Query: 165 AGA 167
           +GA
Sbjct: 177 SGA 179

Length = 343

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 51/182 (28%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---NSISIGSGTNIQDNSLVHVA- 109
           V+ ++V +   A I  +V++G G+ I     +  +V   N++ I SG  I  +   +   
Sbjct: 131 VIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGT 190

Query: 110 -----KSNLAGKVLPTIIGDNV------TVGHSAVLH----------------------- 135
                K    G+V   IIGD+V      T+   A+                         
Sbjct: 191 AIGWVKIPQIGRV---IIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGE 247

Query: 136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI----------PCGEVWGGNP 185
            C +  +  +     +   V +     +A    +     I                GG P
Sbjct: 248 HCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPGYSGGIP 307

Query: 186 AR 187
           A+
Sbjct: 308 AQ 309

Length = 338

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 16/91 (17%)

Query: 57  KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGK 116
           +DV + P+  + G V++G    I  GCV++   NS+ IGS   I+  S   +  S     
Sbjct: 266 RDVEIDPNVILEGKVKIGDDVVIGPGCVIK---NSV-IGSNVVIKAYS--VLEGSE---- 315

Query: 117 VLPTIIGDNVTVGHSAVLH-GCTVEDEAFVG 146
                IG+   VG  A L  G  +     +G
Sbjct: 316 -----IGEGCDVGPFARLRPGSVLGAGVHIG 341

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 31/129 (24%)

Query: 67  IIGD-VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN 125
           II D V++G  +      + RG  +   IG GT I DN LV               I  N
Sbjct: 197 IIEDDVEIGANT-----TIDRGAFDDTIIGEGTKI-DN-LVQ--------------IAHN 235

Query: 126 VTVGHSAVLHGCT-VEDEAFVGMGATLLDGVYVEKH------AMVAAGALVRQNTKIPCG 178
             +G + ++     +     +G    +   V V  H        + A + V ++  IP  
Sbjct: 236 CRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKS--IPPP 293

Query: 179 EVWGGNPAR 187
            V+GG PAR
Sbjct: 294 GVYGGIPAR 302

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 46  MNIFD-KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQD 102
            +++D K P+   + FL P+  +  D QV   S +  GC++ G    +S+ +G    I  
Sbjct: 264 FDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGATVSHSV-LGIRVRIGS 321

Query: 103 NSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATL 151
            S            V  ++I  +V +G  AV+    ++    +G G  +
Sbjct: 322 GS-----------TVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVI 359

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
PLN02296	269	carbonate dehydratase	100.0
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	100.0
PLN02472	246	uncharacterized protein	99.97
PRK13627	196	carnitine operon protein CaiE; Provisional	99.97
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.96
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.95
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.94
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.94
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.94
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.93
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.92
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.92
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.92
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.91
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.91
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.9
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.9
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.89
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.88
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.88
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.88
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.87
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.87
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.87
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.86
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.86
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.86
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.86
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.85
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.84
PRK10502	182	putative acyl transferase; Provisional	99.83
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.82
PRK10092	183	maltose O-acetyltransferase; Provisional	99.82
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.81
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.81
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.8
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.79
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.79
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.78
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.77
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.77
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.77
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.76
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	99.76
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.76
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.75
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.74
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.73
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.73
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	99.73
PRK11132	273	cysE serine acetyltransferase; Provisional	99.72
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.72
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.71
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.71
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.7
PLN02694	294	serine O-acetyltransferase	99.7
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.69
PLN02739	355	serine acetyltransferase	99.68
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.68
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.67
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.67
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.67
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.66
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.66
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.66
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.66
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.66
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.65
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.65
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.63
PLN02357	360	serine acetyltransferase	99.63
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	99.63
PRK10191	146	putative acyl transferase; Provisional	99.63
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.63
PLN02296	269	carbonate dehydratase	99.62
PRK13627	196	carnitine operon protein CaiE; Provisional	99.61
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.61
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.61
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	99.6
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.59
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.58
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.58
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.57
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.57
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.57
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.56
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.56
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.56
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.55
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.55
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.55
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.54
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.54
PLN02472	246	uncharacterized protein	99.54
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.53
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.53
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.53
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.53
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.51
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.49
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.47
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.46
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.46
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.46
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.44
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.42
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.39
PRK10502	182	putative acyl transferase; Provisional	99.36
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.33
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.32
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.31
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.3
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.29
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.29
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.28
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.28
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.28
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.27
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.26
PRK10191	146	putative acyl transferase; Provisional	99.25
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.25
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.25
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.23
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.2
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.19
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.18
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.18
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.18
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.18
PRK11132	273	cysE serine acetyltransferase; Provisional	99.18
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.18
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.16
PRK10092	183	maltose O-acetyltransferase; Provisional	99.15
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.14
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.14
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.14
PLN02739	355	serine acetyltransferase	99.13
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.1
PLN02694	294	serine O-acetyltransferase	99.1
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.1
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.08
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.07
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.04
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.04
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.03
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.03
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.03
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.03
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.02
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.98
PLN02357	360	serine acetyltransferase	98.97
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.94
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.92
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.9
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	98.82
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.81
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.79
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.75
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.72
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.71
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.68
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.64
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.64
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.62
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.6
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.53
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.52
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.51
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.46
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.43
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.42
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.4
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	98.24
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.18
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	97.9
COG4801	277	Predicted acyltransferase [General function predic	97.87
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	97.86
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.78
COG4801	277	Predicted acyltransferase [General function predic	97.3
PF13720	83	Acetyltransf_11: Udp N-acetylglucosamine O-acyltra	95.45
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	90.1
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	86.7
PF04519	101	Bactofilin: Polymer-forming cytoskeletal; InterPro	85.3

>PLN02296 carbonate dehydratase

Probab=100.00  E-value=1.3e-46  Score=325.79  Aligned_cols=269  Identities=91%  Similarity=1.392  Sum_probs=258.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhcccccCchhhhhhhhhhhhhhhhcCCCceECCCCEECCCcEEecCeEECCCCEEc
Q 024153            1 MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIW   80 (271)
Q Consensus         1 m~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~   80 (271)
                      |++|.+++|.+|.|+|+++|++++++.++.+.+.|++.+++++.++.+.+..+.|+++++|+|++.+.+++.||++|.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~   80 (269)
T PLN02296          1 MGTLGRAIYTVGFWIRETGQALDRLGCRLQGNYYFREQLSRHRTLMNIFDKAPVVDKDAFVAPSASVIGDVQVGRGSSIW   80 (269)
T ss_pred             CchHHHHHHHHHHHHHhhcchHhhhceeeecchHHHHHHHHHHHHHhhcCCCCccCCCCEECCCcEEEcceEECCCCEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCC
Q 024153           81 YGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKH  160 (271)
Q Consensus        81 ~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~  160 (271)
                      ++|+|.++.+++.||++|.|+++|+|+.......+..++++||++|.|++++++++|+||++|+||.+++|.++++|+++
T Consensus        81 ~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~  160 (269)
T PLN02296         81 YGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKH  160 (269)
T ss_pred             CCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCC
Confidence            99999998888999999999999999865444444456899999999999999999999999999999999999999999


Q ss_pred             cEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccchh
Q 024153          161 AMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE  240 (271)
Q Consensus       161 ~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (271)
                      ++|+++|+|.+++.||++++|.|+||++++++++.++..+...+..|.+++..++.+..+.+++++.++++++++..+++
T Consensus       161 a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~~~~~~~~a~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
T PLN02296        161 AMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE  240 (269)
T ss_pred             CEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccccCCccccCCCccCCCCCCC
Q 024153          241 EYDSMLGVVRETPAELILPDNVMQDKVPK  269 (271)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (271)
                      +|++..+..++.||+...|++++++++||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (269)
T PLN02296        241 EYDSMLGVVRETPPELILPDNILPDKAPK  269 (269)
T ss_pred             ccccccCcccCCCCcccCCCccccccCCC
Confidence            99999999999999999999999999987

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=100.00  E-value=2.4e-33  Score=224.11  Aligned_cols=165  Identities=47%  Similarity=0.810  Sum_probs=155.6

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcE
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVT  127 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~  127 (271)
                      +.+..+.|++.++|+|+++|.|++.||+++.|+++++|++|.+.+.||++|.|+++|+|+....      .+++||++|+
T Consensus         7 ~~~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~------~p~~IG~~vt   80 (176)
T COG0663           7 YEGLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG------YPVTIGDDVT   80 (176)
T ss_pred             ccCCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC------CCeEECCCcE
Confidence            4456788999999999999999999999999999999999999999999999999999997543      5899999999


Q ss_pred             ECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHH
Q 024153          128 VGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY  207 (271)
Q Consensus       128 i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~  207 (271)
                      ||+++.||+|+||++|+||.|++|+++++||++|+||++|+|+++..+|+++++.|.|+++++.++++++.+++.++.+|
T Consensus        81 IGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~~~~~~~~a~~Y  160 (176)
T COG0663          81 IGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAENY  160 (176)
T ss_pred             EcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChhHhhhhhHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 024153          208 SNLARVHAAEN  218 (271)
Q Consensus       208 ~~~~~~~~~~~  218 (271)
                      ..+...+.+..
T Consensus       161 v~~~~~~~~~~  171 (176)
T COG0663         161 VKLADRYLAGL  171 (176)
T ss_pred             HHHHHHHhhhh
Confidence            99998775443

>PLN02472 uncharacterized protein

Probab=99.97  E-value=1.6e-28  Score=210.33  Aligned_cols=187  Identities=35%  Similarity=0.629  Sum_probs=167.7

Q ss_pred             chhhhhhhhhhhhhhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCc
Q 024153           32 NYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKS  111 (271)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~  111 (271)
                      .+.+.......+.+..+.+..+.++.+++|.|++.+.+++.||+++.|+++++|+++.+.+.||++|.|+++|+|+....
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~  118 (246)
T PLN02472         39 PDRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWN  118 (246)
T ss_pred             ccccccCcCCcceEEecCCcCCccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCc
Confidence            44445556666777888888899999999999999999999999999999999999989999999999999999986542


Q ss_pred             CCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC
Q 024153          112 NLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK  191 (271)
Q Consensus       112 ~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~  191 (271)
                      ...+..+++.||++|.|++++.|++|+||++|+||.+++|.++++||++++|+++++|.++..||+++++.|+||+++++
T Consensus       119 ~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~  198 (246)
T PLN02472        119 SPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRT  198 (246)
T ss_pred             cccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEecc
Confidence            22223357999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024153          192 LTEEEMAFISQSAINYSNLARVHAAEN  218 (271)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (271)
                      +++.+.+.+...++.|.++...+..+.
T Consensus       199 ~~~~~~~~l~~~a~~y~~l~k~~~~~~  225 (246)
T PLN02472        199 LTNEETLEIPKLAVAINDLSQSHFSEF  225 (246)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999886543

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.97  E-value=8.5e-29  Score=205.88  Aligned_cols=164  Identities=32%  Similarity=0.547  Sum_probs=152.6

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCC
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN  125 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (271)
                      +.+.+..+.++++++|+|++.|.+++.||++|.|+++++|+++.+.+.||++|.|+++|+|+....      .++.|+++
T Consensus         4 ~~~~~~~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~------~~siIg~~   77 (196)
T PRK13627          4 YAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD------TDTIVGEN   77 (196)
T ss_pred             cccCCCCCccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC------CCCEECCC
Confidence            445566778999999999999999999999999999999999887899999999999999986433      47999999


Q ss_pred             cEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHH
Q 024153          126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAI  205 (271)
Q Consensus       126 ~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~  205 (271)
                      +.|++++.+++++||++|+||.+++|.++++||++++|+++|+|.+++.+|++++|.|+||++++.+++.++.+++..+.
T Consensus        78 ~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~  157 (196)
T PRK13627         78 GHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDELHWKRLNTK  157 (196)
T ss_pred             CEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999998888899


Q ss_pred             HHHHHHHHHH
Q 024153          206 NYSNLARVHA  215 (271)
Q Consensus       206 ~~~~~~~~~~  215 (271)
                      +|.++...+.
T Consensus       158 ~y~~~~~~~~  167 (196)
T PRK13627        158 EYQDLVGRCH  167 (196)
T ss_pred             HHHHHHHHHH
Confidence            9999998884

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.96  E-value=1e-28  Score=204.81  Aligned_cols=163  Identities=36%  Similarity=0.602  Sum_probs=152.5

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCc
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV  126 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~  126 (271)
                      .+.+..+.|+++++|+|++.|.+++.||++|.|+++++|.++.+.+.||++|.|+++|+|+...      .+++.||+++
T Consensus         3 ~~~~~~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~------~~~siIg~~~   76 (192)
T TIGR02287         3 QIDGLTPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP------GQDTVVEENG   76 (192)
T ss_pred             CcCCcCCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC------CCCCeECCCC
Confidence            4556778899999999999999999999999999999999988889999999999999996432      2479999999


Q ss_pred             EECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHH
Q 024153          127 TVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAIN  206 (271)
Q Consensus       127 ~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~  206 (271)
                      .|++++.|++|+||++|+||.++.+.++++||++++|+++++|.++..||+++++.|+||++++.+++.++.++.+.+..
T Consensus        77 ~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~~~~~~~~~~~~~  156 (192)
T TIGR02287        77 HVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSEQELAWKKQGTHE  156 (192)
T ss_pred             EECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             HHHHHHHHH
Q 024153          207 YSNLARVHA  215 (271)
Q Consensus       207 ~~~~~~~~~  215 (271)
                      |..+...++
T Consensus       157 y~~~~~~~~  165 (192)
T TIGR02287       157 YQVLATRCK  165 (192)
T ss_pred             HHHHHHHHH
Confidence            999998884

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.95  E-value=4.7e-29  Score=206.35  Aligned_cols=205  Identities=20%  Similarity=0.196  Sum_probs=155.6

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCCCCCcc
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNLAGKVL  118 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~~~~~~  118 (271)
                      .++++++|++++.|++.++|.|.++||+++.|.++++|..++         ..+.||++|.|.++++|+.++..   ..+
T Consensus        29 iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~~---g~g  105 (260)
T COG1043          29 IIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQ---GGG  105 (260)
T ss_pred             EECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccccC---Cce
Confidence            444444444444444444455555555555555555554322         45666777777777777665542   124


Q ss_pred             ceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          119 PTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      -+.||+++.+..++.+ |+|+||++|.+..++++.++|.|||+++||+.+.|.+.++|+++++++|. +.+.+|+||+.+
T Consensus       106 ~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~-S~v~~DVpPy~~  184 (260)
T COG1043         106 VTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGL-SAVSQDVPPYVI  184 (260)
T ss_pred             eEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccc-cccccCCCCeEE
Confidence            5677777777777766 67999999999999999999999999999999999999999999999876 889999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccchhhhhhhccccccCCccccC
Q 024153          198 AFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELIL  258 (271)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (271)
                      ..  .+......++.+.|+++..+.+++..++..+|.+.+....+++....+.+..+..++
T Consensus       185 ~~--Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~~~~~  243 (260)
T COG1043         185 AS--GNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYADNPE  243 (260)
T ss_pred             ec--CCcccccccceeeeeccCCCHHHHHHHHHHHHHHeeCCCCHHHHHHHHHHHhcCChH
Confidence            87  777788999999999999998999999999999999998899888877666555544

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.94  E-value=1e-25  Score=181.48  Aligned_cols=153  Identities=38%  Similarity=0.659  Sum_probs=140.1

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV  133 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~  133 (271)
                      .|+++++|+|++.|.+++.||++|.|+++++|.++.+.+.||++|.|+++|+|+..      ..+++.||+++.|++++.
T Consensus         2 ~i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~------~~~~~~Ig~~~~Ig~~~~   75 (155)
T cd04745           2 VVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGF------PGQDTVLEENGHIGHGAI   75 (155)
T ss_pred             ccCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeec------CCCCeEEcCCCEECCCcE
Confidence            46889999999999999999999999999999987677999999999999999642      124799999999999999


Q ss_pred             EeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHHHHH
Q 024153          134 LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR  212 (271)
Q Consensus       134 i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (271)
                      +.++.||++|+|+.++.|.++++||++++|+++++|.+++.|++++++.|+|++.++.++++++++.+.....|..|+.
T Consensus        76 i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
T cd04745          76 LHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEVAWKTRGTKEYQQLAA  154 (155)
T ss_pred             EECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999998999999999999999999999999887777777776653

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.94  E-value=3.5e-27  Score=203.98  Aligned_cols=155  Identities=20%  Similarity=0.365  Sum_probs=122.5

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCC----
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNL----  113 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~----  113 (271)
                      ..+++.+.|++++.|++++.|.+++.||+++.|+++++|.+.+         ..+.||++|.|+++++|+.+....    
T Consensus        24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~  103 (255)
T PRK12461         24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTR  103 (255)
T ss_pred             CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcEE
Confidence            4566777788888888888888888888888888888887532         368899999999999998754211    


Q ss_pred             ----------CCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153          114 ----------AGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG  182 (271)
Q Consensus       114 ----------~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~  182 (271)
                                ....|++.||++|.|++++.+.+ ++|||+++||.++.|.++++||++++|+++|+|.+|  |||++++.
T Consensus       104 IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~  181 (255)
T PRK12461        104 IGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMA  181 (255)
T ss_pred             EcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEecc--CCCCeEEe
Confidence                      11246777777777777777655 899999999999999999999999999999999998  99999999


Q ss_pred             ccCceEc---------cCCCHHHHHHHHHH
Q 024153          183 GNPARFL---------RKLTEEEMAFISQS  203 (271)
Q Consensus       183 G~pa~~~---------~~~~~~~~~~~~~~  203 (271)
                      |+||++.         +.++++++..++++
T Consensus       182 G~pa~~~~~n~vgl~r~g~~~~~~~~~~~~  211 (255)
T PRK12461        182 GHPTNVHGLNAVGLRRRGFSSRAIRALKRA  211 (255)
T ss_pred             cCcceEeccchhhhhhcCCCHHHHHHHHHH
Confidence            9999862         45788887776665

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.94  E-value=6.8e-25  Score=176.38  Aligned_cols=152  Identities=42%  Similarity=0.703  Sum_probs=141.9

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV  133 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~  133 (271)
                      .+.++++|+|.+.|.+++.||++|.|++++.|.++..++.||++|.|+++|.|....      ..++.||+++.|+.++.
T Consensus         2 ~~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~------~~~~~Ig~~~~I~~~~~   75 (154)
T cd04650           2 RISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH------GYPTEIGDYVTIGHNAV   75 (154)
T ss_pred             ccCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC------CCCeEECCCCEECCCcE
Confidence            478899999999999999999999999999999877789999999999999998531      13689999999999999


Q ss_pred             EeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHHHH
Q 024153          134 LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA  211 (271)
Q Consensus       134 i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~  211 (271)
                      ++++.||++|+|+.++.+.++++||+++++++++.|.++..+++++++.|+||++++.+++.++.++++++..|.+++
T Consensus        76 i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~  153 (154)
T cd04650          76 VHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNAEEYVELA  153 (154)
T ss_pred             EECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998899999999999999999999999999999999888764

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.93  E-value=3.4e-24  Score=185.40  Aligned_cols=208  Identities=21%  Similarity=0.242  Sum_probs=174.9

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC--CCccceEEcC
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--GKVLPTIIGD  124 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~--~~~~~~~Ig~  124 (271)
                      +.+++.+.|++++.|+|++.|.+++.||++|.|+++++|.++   +.||++|.|+++++|...++++.  +....+.||+
T Consensus         6 a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~   82 (255)
T PRK12461          6 AVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGP---TRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD   82 (255)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCC---CEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence            467888899999999999999999999999999999999976   89999999999999987655422  2223455666


Q ss_pred             CcEECcCcEE-------------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCc
Q 024153          125 NVTVGHSAVL-------------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGE  179 (271)
Q Consensus       125 ~~~i~~~~~i-------------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~  179 (271)
                      ++.|+++++|                         ++|.||++|+|+.++.+.++++||++++|++++.|.++++|++++
T Consensus        83 ~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a  162 (255)
T PRK12461         83 RNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALA  162 (255)
T ss_pred             ceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCc
Confidence            6666655554                         357888888888888889999999999999999999999999999


Q ss_pred             EEeccCceEccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccchhhhhhhccccccCCccccCC
Q 024153          180 VWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELILP  259 (271)
Q Consensus       180 vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (271)
                      ++++. +.+.+|+|++.+..  .++.++..++...|+++..+.++++..+..++.+.+....+.+....+++..++.++.
T Consensus       163 ~Vg~g-s~V~~dVpp~~i~~--G~pa~~~~~n~vgl~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (255)
T PRK12461        163 MMAGG-SRISKDVPPYCMMA--GHPTNVHGLNAVGLRRRGFSSRAIRALKRAYKIIYRSGLSVQQAVAELELQQFESPEV  239 (255)
T ss_pred             EECCC-ceEeccCCCCeEEe--cCcceEeccchhhhhhcCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCCHHH
Confidence            99766 99999999999876  6677788999999999999999999999999999998888888888777765555443


Q ss_pred             C
Q 024153          260 D  260 (271)
Q Consensus       260 ~  260 (271)
                      +
T Consensus       240 ~  240 (255)
T PRK12461        240 E  240 (255)
T ss_pred             H
Confidence            3

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.92  E-value=6.4e-24  Score=170.61  Aligned_cols=151  Identities=55%  Similarity=0.950  Sum_probs=141.9

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      ++++++|+|++.|.+++.||+++.|+++++|.++...+.||++|.|+++++|.....      ++++||+++.|+.++.+
T Consensus         2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~------~~~~Ig~~~~I~~~~~i   75 (153)
T cd04645           2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG------YPTIIGDNVTVGHGAVL   75 (153)
T ss_pred             ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC------CCeEEcCCcEECCCcEE
Confidence            688999999999999999999999999999998888899999999999999986432      46899999999999999


Q ss_pred             eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHHHH
Q 024153          135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA  211 (271)
Q Consensus       135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~  211 (271)
                      .++.||++++|+.++.+.++++|+++|+|++++.|.+++.+++++++.|.|+++.++++..+...+.++..+|.+|.
T Consensus        76 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (153)
T cd04645          76 HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTDEEIAELRESAEHYVELA  152 (153)
T ss_pred             eeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888764

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.92  E-value=2.3e-25  Score=193.90  Aligned_cols=155  Identities=22%  Similarity=0.325  Sum_probs=117.9

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCCC---
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNLA---  114 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~~---  114 (271)
                      ..+++.+.|++++.|++++.|.+++.||++|.|+++++|.+++         ..+.||++|.|+++|+|..+.....   
T Consensus        27 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t  106 (262)
T PRK05289         27 CVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVT  106 (262)
T ss_pred             eEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCee
Confidence            3456667777777777778888888888888888888886532         3588999999999999886542110   


Q ss_pred             ------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153          115 ------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW  181 (271)
Q Consensus       115 ------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv  181 (271)
                                  ...|++.||+++.+++++.+.+ ++|||+||||.++.|.++++||++++|+++|+|.++  ||+++++
T Consensus       107 ~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~  184 (262)
T PRK05289        107 RIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLA  184 (262)
T ss_pred             EECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceecc--CCCCeEE
Confidence                        0124455555555555555444 899999999999999999999999999999999998  9999999


Q ss_pred             eccCceEc---------cCCCHHHHHHHHHH
Q 024153          182 GGNPARFL---------RKLTEEEMAFISQS  203 (271)
Q Consensus       182 ~G~pa~~~---------~~~~~~~~~~~~~~  203 (271)
                      .|+||+..         ++++++.+..++.+
T Consensus       185 ~G~pa~~~~~n~~g~~~~~~~~~~~~~i~~a  215 (262)
T PRK05289        185 EGNPARLRGLNLVGLKRRGFSREEIHALRRA  215 (262)
T ss_pred             ecccCeEeccchhhhhhCCCCHHHHHHHHHH
Confidence            99999975         46777777665544

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.92  E-value=2.1e-24  Score=178.73  Aligned_cols=149  Identities=25%  Similarity=0.324  Sum_probs=130.6

Q ss_pred             cCCCceECCCCEECCCcEEec------------CeEECCCCEEccCcEEecCC----CceEECCCCEECCCCEEecCCcC
Q 024153           49 FDKAPVVNKDVFLAPSASIIG------------DVQVGRGSSIWYGCVLRGDV----NSISIGSGTNIQDNSLVHVAKSN  112 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~------------~v~IG~~~~I~~~~~I~~~~----~~~~IG~~~~I~~~~~I~~~~~~  112 (271)
                      +....+||+++.|.|++.|++            .+.||+++.|.++++|....    +.+.||+++.|..++.|-     
T Consensus        48 v~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVA-----  122 (260)
T COG1043          48 VEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVA-----  122 (260)
T ss_pred             EeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeee-----
Confidence            444567889999999998863            48899999999999997533    568899999999998885     


Q ss_pred             CCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc--
Q 024153          113 LAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL--  189 (271)
Q Consensus       113 ~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~--  189 (271)
                           |+|.||++|.+.+++.|.| +.|||++.||..+-|.+.|+||++|+||+.|.|.+|  |||++++.|+||+..  
T Consensus       123 -----HDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~D--VpPy~~~~Gn~a~l~Gl  195 (260)
T COG1043         123 -----HDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQD--VPPYVIASGNHARLRGL  195 (260)
T ss_pred             -----ccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccccccC--CCCeEEecCCccccccc
Confidence                 7999999999999999988 999999999999999999999999999999999999  999999999999875  


Q ss_pred             -------cCCCHHHHHHHHHHHHHHHHHHH
Q 024153          190 -------RKLTEEEMAFISQSAINYSNLAR  212 (271)
Q Consensus       190 -------~~~~~~~~~~~~~~~~~~~~~~~  212 (271)
                             +.++.+++..++++   |+.+.+
T Consensus       196 N~vGlkRrgf~~e~i~alr~a---yk~lfr  222 (260)
T COG1043         196 NIVGLKRRGFSREEIHALRKA---YKLLFR  222 (260)
T ss_pred             ceeeeeccCCCHHHHHHHHHH---HHHHee
Confidence                   67888888887776   555553

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.91  E-value=2.7e-23  Score=180.92  Aligned_cols=203  Identities=22%  Similarity=0.244  Sum_probs=149.7

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCC--CCCccceEEc
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL--AGKVLPTIIG  123 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~--~~~~~~~~Ig  123 (271)
                      .+.+.+.+.|++++.|+|++.|.+++.||++|.|+++++|.+.   +.||++|.|+++++|...+++.  .+....+.||
T Consensus         8 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG   84 (262)
T PRK05289          8 TAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGH---TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG   84 (262)
T ss_pred             CCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCc---cEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence            3567888999999999999999999999999999999999976   8999999999999997654432  1112234444


Q ss_pred             CCcEECcC-------------------------cEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCC
Q 024153          124 DNVTVGHS-------------------------AVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPC  177 (271)
Q Consensus       124 ~~~~i~~~-------------------------~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~  177 (271)
                      ++|.|+++                         +.| |+|.||++|++++++.+.++++||++|+||+++.|.++++|++
T Consensus        85 ~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~  164 (262)
T PRK05289         85 DNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGA  164 (262)
T ss_pred             CCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECC
Confidence            44444444                         444 3466677777777777778899999999999999999999999


Q ss_pred             CcEEeccCceEccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccchhhhhhhccccccCCc
Q 024153          178 GEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPA  254 (271)
Q Consensus       178 ~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (271)
                      ++++++. +.+.++++++.+.+  .++.+...+....+++...+-+.+..++..++.+.+....+.+....+++..+
T Consensus       165 ~~~Ig~g-s~V~~di~~~~~~~--G~pa~~~~~n~~g~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~  238 (262)
T PRK05289        165 HAMVGGM-SGVSQDVPPYVLAE--GNPARLRGLNLVGLKRRGFSREEIHALRRAYKLLYRSGLTLEEALEELAEEYP  238 (262)
T ss_pred             CCEEeee-cceeccCCCCeEEe--cccCeEeccchhhhhhCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHhhcc
Confidence            9999765 99999999877765  33333344566666666666666666666666666666555555555554433

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.91  E-value=5e-23  Score=167.17  Aligned_cols=136  Identities=16%  Similarity=0.233  Sum_probs=122.7

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV  133 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~  133 (271)
                      +|+++++|+|++.|.+++.||++|.|++++.|..+.+.+.||++|.|+++|+|........+...++.||+++.+..++.
T Consensus         1 ~~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~   80 (164)
T cd04646           1 KIAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCK   80 (164)
T ss_pred             CcCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcE
Confidence            37899999999999999999999999999999876667999999999999999865432223345689999999999999


Q ss_pred             EeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          134 LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       134 i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                      +.+++|||+|+||.+++|.++++||++|+||++++|.+++.+|+++++.|+|+...
T Consensus        81 i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~  136 (164)
T cd04646          81 CEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRR  136 (164)
T ss_pred             EEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEE
Confidence            99999999999999999999999999999999999999999999999999987554

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.90  E-value=1.3e-22  Score=164.43  Aligned_cols=153  Identities=20%  Similarity=0.373  Sum_probs=135.6

Q ss_pred             ECCCCEECCCcEEec--CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCC--CccceEEcCCcEECc
Q 024153           55 VNKDVFLAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAG--KVLPTIIGDNVTVGH  130 (271)
Q Consensus        55 i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~--~~~~~~Ig~~~~i~~  130 (271)
                      ...++.|+..+.|.+  ++.||+++.|+++++|.++...+.||++|.|+++|.|.+..+...+  ...+++||+++.|++
T Consensus         4 ~~~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~   83 (161)
T cd03359           4 TASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGE   83 (161)
T ss_pred             CcCCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECC
Confidence            456778888888866  7999999999999999988778999999999999999875432221  234789999999999


Q ss_pred             CcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHH
Q 024153          131 SAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY  207 (271)
Q Consensus       131 ~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~  207 (271)
                      ++.++++.|+++++|+.++.|..+++|+++++|+++++|.+++.|+++++++|+||++++++++.+.+.+....++|
T Consensus        84 ~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~~~~~~~~~  160 (161)
T cd03359          84 NCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQELMEEETKEY  160 (161)
T ss_pred             CCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHHHHhhHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998877766655

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.90  E-value=1.1e-22  Score=176.60  Aligned_cols=155  Identities=22%  Similarity=0.340  Sum_probs=122.4

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCC--C
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNL--A  114 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~--~  114 (271)
                      ...+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+.+         ..+.||++|.|+++|+|.......  .
T Consensus        22 ~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~  101 (254)
T TIGR01852        22 FCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGV  101 (254)
T ss_pred             CCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCc
Confidence            34567788888889999999999999999999999999997422         368999999999999998654211  0


Q ss_pred             -------------CCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcE
Q 024153          115 -------------GKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV  180 (271)
Q Consensus       115 -------------~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~v  180 (271)
                                   ...++++||+++.|++++.+. +++|||+|+||.++.|.++++||++++|+++|+|.++  ||++++
T Consensus       102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~  179 (254)
T TIGR01852       102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGL  179 (254)
T ss_pred             EEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeee--cCCCcE
Confidence                         012566666666666666664 4899999999999999999999999999999999998  999999


Q ss_pred             EeccCceE---------ccCCCHHHHHHHHH
Q 024153          181 WGGNPARF---------LRKLTEEEMAFISQ  202 (271)
Q Consensus       181 v~G~pa~~---------~~~~~~~~~~~~~~  202 (271)
                      +.|+|+++         ..+++++....+..
T Consensus       180 ~~G~pa~~~~~~~~g~~~~~~~~~~~~~~~~  210 (254)
T TIGR01852       180 VEGNRARLRGLNIVGLRRRGFSREDITAIKK  210 (254)
T ss_pred             EecCcCeecccceeeeecCCCCHHHHHHHHH
Confidence            99999998         34566666654443

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.89  E-value=2.8e-23  Score=180.29  Aligned_cols=141  Identities=21%  Similarity=0.298  Sum_probs=107.5

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC---------CCceEECCCCEECCCCEEecCCcCCC---
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISIGSGTNIQDNSLVHVAKSNLA---  114 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~~~IG~~~~I~~~~~I~~~~~~~~---  114 (271)
                      ..+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+.         ...+.||++|.|+++|+|........   
T Consensus        24 ~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~  103 (254)
T cd03351          24 CVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVT  103 (254)
T ss_pred             cEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCce
Confidence            455677788888888888888888888888888888888642         23688999999999999876432110   


Q ss_pred             ------------CCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153          115 ------------GKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW  181 (271)
Q Consensus       115 ------------~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv  181 (271)
                                  ...+++.||++|.|++++.+ ++++||++|+|++++.|.++++||++++|+++|+|.++  |++++++
T Consensus       104 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~  181 (254)
T cd03351         104 RIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIA  181 (254)
T ss_pred             EECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeee--cCCCeEE
Confidence                        00134444444444444444 34899999999999999999999999999999999998  8999999


Q ss_pred             eccCceEc
Q 024153          182 GGNPARFL  189 (271)
Q Consensus       182 ~G~pa~~~  189 (271)
                      .|+|++..
T Consensus       182 ~G~~~~~~  189 (254)
T cd03351         182 AGNRARLR  189 (254)
T ss_pred             EccCCeEe
Confidence            99999753

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.88  E-value=9.3e-22  Score=167.80  Aligned_cols=128  Identities=34%  Similarity=0.548  Sum_probs=119.5

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      ++.++.|++++.|.+++.||+++.|++++.|.+.   +.||++|.|++++.|..          ++.||++|.|+.++.+
T Consensus        83 vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~I~~----------~s~Ig~~~~Ig~~~~I  149 (231)
T TIGR03532        83 KNINARIEPGAIIRDQVIIGDNAVIMMGAVINIG---AEIGEGTMIDMNAVLGG----------RATVGKNVHIGAGAVL  149 (231)
T ss_pred             cccccEECCCCEEeCCeEECCCCEEecCcccCCC---eEECCCCEEccccccCC----------CcEECCCcEEcCCcEE
Confidence            5788999999999999999999999999999865   89999999999999863          7899999999999999


Q ss_pred             e---------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          135 H---------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       135 ~---------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      .         ++.||++|+||++++|.++++||++++|+++++|.++  +++++++.|+||++++.+++...
T Consensus       150 ~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~G~PA~~i~~~~~~~~  219 (231)
T TIGR03532       150 AGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVAGVPAKVIKQVDEKTK  219 (231)
T ss_pred             ccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCEEeccCChhHh
Confidence            7         4899999999999999999999999999999999998  99999999999999999988664

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.88  E-value=1.7e-21  Score=162.53  Aligned_cols=132  Identities=17%  Similarity=0.372  Sum_probs=109.5

Q ss_pred             eECCCCEECCCcEEe--cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153           54 VVNKDVFLAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS  131 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~  131 (271)
                      .++++++|.|++.+.  .++.||+++.|+.+++|.. .+.+.||++|.|+++|.|....++....     +.     ..+
T Consensus        57 ~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d-~~~I~IGd~v~Ig~~v~I~~~~h~~~~~-----~r-----~~g  125 (203)
T PRK09527         57 TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVD-DYTVTIGDNVLIAPNVTLSVTGHPVHHE-----LR-----KNG  125 (203)
T ss_pred             hcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEec-CCCEEECCCCEECCCCEEEeCCCCCChh-----hc-----ccc
Confidence            389999999998874  6899999999999999974 3679999999999999998755432110     00     011


Q ss_pred             c-EEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          132 A-VLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       132 ~-~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      . ..+.++||++||||.+++|.++++||++++|+++|+|.++  ||++++++|+||++++.+.+.+..
T Consensus       126 ~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--vp~~~v~~G~PAk~i~~~~~~~~~  191 (203)
T PRK09527        126 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--IPPNVVAAGVPCRVIREINDRDKQ  191 (203)
T ss_pred             ccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCcEEEeeCCEEeccCCHHHHH
Confidence            1 2256999999999999999999999999999999999998  999999999999999999765543

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.88  E-value=1.7e-21  Score=163.36  Aligned_cols=86  Identities=27%  Similarity=0.469  Sum_probs=71.5

Q ss_pred             eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHHHHHHHHHHHHHH
Q 024153          135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFISQSAINYSNLARV  213 (271)
Q Consensus       135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~~~~~~~~~~~~~  213 (271)
                      .++.||++|+||.+++|.++++||++++|+++++|.++  ||++++++|+||++++. ++++.++.+.  ...||++..+
T Consensus       107 ~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~--i~~~~~~~G~Pa~~~~~~~~~~~~~~l~--~~~ww~~~~~  182 (204)
T TIGR03308       107 KRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGVPAKLIRRRFPPEIAARIE--ALAWWDWDHE  182 (204)
T ss_pred             CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEecCchHhhhcCCHHHHHHHH--hccccCCCHH
Confidence            36899999999999999999999999999999999998  99999999999999874 6777777665  3356777776


Q ss_pred             HHHHhccchhh
Q 024153          214 HAAENAKSFDE  224 (271)
Q Consensus       214 ~~~~~~~~~~~  224 (271)
                      .+++....+..
T Consensus       183 ~~~~~~~~~~~  193 (204)
T TIGR03308       183 TLREALPDFRD  193 (204)
T ss_pred             HHHHHHHHHhc
Confidence            66655555543

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.87  E-value=3.4e-22  Score=173.52  Aligned_cols=149  Identities=22%  Similarity=0.285  Sum_probs=122.7

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCC-------------
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL-------------  113 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~-------------  113 (271)
                      ..+.+.+.|++++.|+|++.|.+++.||+++.|++++.|.++   +.||++|.|+++++|.....+.             
T Consensus         5 a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~---v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~   81 (254)
T TIGR01852         5 AIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGH---TTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD   81 (254)
T ss_pred             CEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeee---EEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence            456788899999999999999999999999999999999876   8999999999999997432210             


Q ss_pred             -----------CCC---ccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC
Q 024153          114 -----------AGK---VLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG  178 (271)
Q Consensus       114 -----------~~~---~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~  178 (271)
                                 .+.   .+.+.||+++.|+.++.+ ++|+||++|+|++++.+..+++||++|+|++++.|.++++|+++
T Consensus        82 ~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~  161 (254)
T TIGR01852        82 NNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRY  161 (254)
T ss_pred             CCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCC
Confidence                       000   135666777777777766 56899999999999999999999999999999999999999999


Q ss_pred             cEEeccCceEccCCCHHHHHH
Q 024153          179 EVWGGNPARFLRKLTEEEMAF  199 (271)
Q Consensus       179 ~vv~G~pa~~~~~~~~~~~~~  199 (271)
                      +++++. +.+.++++++.+.+
T Consensus       162 ~~Ig~~-s~V~~~i~~~~~~~  181 (254)
T TIGR01852       162 AMIGGL-SAVSKDVPPYGLVE  181 (254)
T ss_pred             CEEeee-eeEeeecCCCcEEe
Confidence            999765 88888888766543

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.87  E-value=2.8e-21  Score=167.73  Aligned_cols=147  Identities=19%  Similarity=0.169  Sum_probs=126.4

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECC------------CCEECCCCEEecCCcCCC
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGS------------GTNIQDNSLVHVAKSNLA  114 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~------------~~~I~~~~~I~~~~~~~~  114 (271)
                      ..+++.+.|++++.|++++.|.+++.|+.++.|++++.|...   +.|+.            ++.|+++|.|.....-..
T Consensus        18 ~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~---a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~   94 (254)
T cd03351          18 VEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPF---ASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHR   94 (254)
T ss_pred             CEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecc---eeecCcccceeecCCCceEEECCCCEECCccEEec
Confidence            356677777778888888888999999999999999999965   88985            899999999987655333


Q ss_pred             CC---ccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153          115 GK---VLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR  190 (271)
Q Consensus       115 ~~---~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~  190 (271)
                      +.   .+.++||++|.|++++.| ++|.||++|+|++++.+..+++||++|+|++++.|.++++|++++++++. +.+.+
T Consensus        95 ~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~-s~V~~  173 (254)
T cd03351          95 GTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGG-SGVVQ  173 (254)
T ss_pred             cccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcC-CEEee
Confidence            22   146999999999999999 67999999999999999999999999999999999999999999999766 88888


Q ss_pred             CCCHHHH
Q 024153          191 KLTEEEM  197 (271)
Q Consensus       191 ~~~~~~~  197 (271)
                      +++++.+
T Consensus       174 ~i~~~~~  180 (254)
T cd03351         174 DVPPYVI  180 (254)
T ss_pred             ecCCCeE
Confidence            8875433

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.87  E-value=6.6e-21  Score=166.42  Aligned_cols=146  Identities=18%  Similarity=0.344  Sum_probs=112.6

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCC---------Cc
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAG---------KV  117 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~---------~~  117 (271)
                      ..++.++.||+++.|+++++|+.++.||++|.|+++++|..+   +.||++|.|++++.|....+.+.+         ..
T Consensus       124 ~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~---~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~  200 (338)
T COG1044         124 VVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHN---VVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQI  200 (338)
T ss_pred             eEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecC---cEECCceEECCCCEEccCccccccccCCceEccee
Confidence            456667777777777777788888888888888888888754   889999999999999887665432         25


Q ss_pred             cceEEcCCcEECcCcEE-----------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCce
Q 024153          118 LPTIIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK  174 (271)
Q Consensus       118 ~~~~Ig~~~~i~~~~~i-----------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~  174 (271)
                      +.++||++|.||.++.|                       |+|.||++|.|.+++.|.+.+.||++|+||..+.|..+..
T Consensus       201 g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~  280 (338)
T COG1044         201 GRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLE  280 (338)
T ss_pred             ceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceE
Confidence            67888888888888777                       4577777777777777888889999999999999999999


Q ss_pred             eCCCcEEeccCceEccCCCHHH
Q 024153          175 IPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       175 I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      |++++.+.+. +.+.+++++..
T Consensus       281 IgD~~~I~~~-~~v~~~i~~~~  301 (338)
T COG1044         281 IGDGVTIGAR-SGVMASITEPG  301 (338)
T ss_pred             EcCCCEEecc-cccccccCCCc
Confidence            9999888765 55555544433

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.86  E-value=2.6e-21  Score=172.98  Aligned_cols=52  Identities=21%  Similarity=0.332  Sum_probs=33.4

Q ss_pred             eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153          137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR  190 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~  190 (271)
                      ++||++|+||.++.|.++++||++++|+++|+|+++  +|+++++.|+||+..+
T Consensus       254 ~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~--v~~~~~~~G~pa~~~~  305 (324)
T TIGR01853       254 TKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKS--IPPPGVYGGIPARPNK  305 (324)
T ss_pred             cEECCCeEEccccccccCCEECCCCEEccCCEeCCc--CCCCcEEEccCccHHH
Confidence            556666666666666666666666666666666666  6666666666665544

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.86  E-value=7.4e-21  Score=170.08  Aligned_cols=145  Identities=16%  Similarity=0.305  Sum_probs=102.0

Q ss_pred             CCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC----------CCccc
Q 024153           50 DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA----------GKVLP  119 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~----------~~~~~  119 (271)
                      +..+.|++++.|+++++|++++.||++|.|+++++|.+.   +.||++|.|+++|+|....+.+.          +..+.
T Consensus       119 ~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~  195 (324)
T TIGR01853       119 GAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYER---VQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGR  195 (324)
T ss_pred             ccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCC---CEECCCCEECCCcEECCCCccceeccCCcceecCccce
Confidence            333444444444444555555555555555555555533   67778888888888765433211          11246


Q ss_pred             eEEcCCcEECcCcEE-----------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeC
Q 024153          120 TIIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIP  176 (271)
Q Consensus       120 ~~Ig~~~~i~~~~~i-----------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~  176 (271)
                      +.||++|.|+++++|                       ++|.||++|.|++++.|.++++||++|++|+++.|.++++|+
T Consensus       196 vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig  275 (324)
T TIGR01853       196 VIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIG  275 (324)
T ss_pred             EEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEEC
Confidence            778888888877766                       457777777777888888889999999999999999999999


Q ss_pred             CCcEEeccCceEccCCCHHHHH
Q 024153          177 CGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       177 ~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      +++++++. +.+.+++++..+.
T Consensus       276 ~~~~ig~~-s~V~~~v~~~~~~  296 (324)
T TIGR01853       276 DNVTIGAK-SGVTKSIPPPGVY  296 (324)
T ss_pred             CCCEEccC-CEeCCcCCCCcEE
Confidence            99999776 9999999887764

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.86  E-value=9.6e-21  Score=159.24  Aligned_cols=139  Identities=19%  Similarity=0.267  Sum_probs=91.7

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC----------------
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN----------------  112 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~----------------  112 (271)
                      +++.+.|+++++|+|++.|.+++.||++|.|+++++|..+   +.||++|.|+++++|....++                
T Consensus        16 i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~   92 (205)
T cd03352          16 IGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEG---CIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGG   92 (205)
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC---CEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcce
Confidence            4455555566666666666566666666666666665543   455555555555555321100                


Q ss_pred             ---------------------CC------------CCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEEC
Q 024153          113 ---------------------LA------------GKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVE  158 (271)
Q Consensus       113 ---------------------~~------------~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig  158 (271)
                                           ..            ...+++.||+++.|+.++.+ +++.||++|+|+.++.|.++++||
T Consensus        93 v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig  172 (205)
T cd03352          93 VIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIG  172 (205)
T ss_pred             EEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEEC
Confidence                                 00            00123344444444444444 348999999999999999999999


Q ss_pred             CCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153          159 KHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       159 ~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~  192 (271)
                      ++++|+++|+|.++  ++++.++.|+||++++++
T Consensus       173 ~~~~i~~~s~v~~~--~~~~~~~~G~pa~~~~~~  204 (205)
T cd03352         173 DGVVIGAGSGVTSI--VPPGEYVSGTPAQPHREW  204 (205)
T ss_pred             CCCEEcCCCEEeeE--CCCCCEEEeecCchhhhc
Confidence            99999999999987  999999999999987765

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.86  E-value=5.7e-21  Score=172.67  Aligned_cols=140  Identities=15%  Similarity=0.258  Sum_probs=75.6

Q ss_pred             CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC---------CCccceE
Q 024153           51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA---------GKVLPTI  121 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~---------~~~~~~~  121 (271)
                      +.+.|++++.|+++++|++++.||++|.|+++++|.++   +.||++|.|+++++|....+.+.         +..+.+.
T Consensus       129 ~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~  205 (343)
T PRK00892        129 AGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHA---VRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI  205 (343)
T ss_pred             ccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCC---CEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence            33444444444444444455555555555555555433   55666666666666654322211         0112455


Q ss_pred             EcCCcEECcCcEE-----------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC
Q 024153          122 IGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG  178 (271)
Q Consensus       122 Ig~~~~i~~~~~i-----------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~  178 (271)
                      ||+++.||++++|                       |+|+||++|+|++++.|.++++||++|+|++++.|.++++|+++
T Consensus       206 Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~  285 (343)
T PRK00892        206 IGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDG  285 (343)
T ss_pred             ECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCC
Confidence            5555555555544                       33555555555555555666666666666666666666666666


Q ss_pred             cEEeccCceEccCCCH
Q 024153          179 EVWGGNPARFLRKLTE  194 (271)
Q Consensus       179 ~vv~G~pa~~~~~~~~  194 (271)
                      ++++++ +.+.+++++
T Consensus       286 ~~i~~~-s~v~~~i~~  300 (343)
T PRK00892        286 VTITAM-SGVTKSIPE  300 (343)
T ss_pred             CEEecC-CeeCCccCC
Confidence            666555 555555555

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.85  E-value=2e-19  Score=146.51  Aligned_cols=133  Identities=29%  Similarity=0.532  Sum_probs=112.7

Q ss_pred             CceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-CceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153           52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH  130 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~  130 (271)
                      .+.|+++++|+|++.|.+++.||++|.|+++++|.++. .++.||++|.|+++++|....      .+++.||+++.|++
T Consensus         2 ~~~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~------~~~v~Ig~~~~I~~   75 (167)
T cd00710           2 EPVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE------GYSVWIGKNVSIAH   75 (167)
T ss_pred             CCEeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC------CCCEEECCCceECC
Confidence            46799999999999999999999999999999998642 468999999999999997532      24799999999999


Q ss_pred             CcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153          131 SAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       131 ~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~  193 (271)
                      ++.+.+ +.||++|+||.++.|. +++||++|+|+++|.|. +..|++++++. ..+.+.++.+
T Consensus        76 ~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~-~~~~v~~~~~  136 (167)
T cd00710          76 GAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVP-AGAVITSQTQ  136 (167)
T ss_pred             CCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEEC-CCCEEcCCCc
Confidence            999987 9999999999999996 69999999999999995 45788887773 3244433433

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.84  E-value=6.9e-20  Score=165.61  Aligned_cols=144  Identities=18%  Similarity=0.264  Sum_probs=115.8

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC----------------CceEECCCCEECCCCEEecCC
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV----------------NSISIGSGTNIQDNSLVHVAK  110 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~----------------~~~~IG~~~~I~~~~~I~~~~  110 (271)
                      ..++..+.||+++.|++++.|.+++.||++|.|+++++|..+.                +.+.||+++.|+++++|..+.
T Consensus       143 ~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~  222 (343)
T PRK00892        143 AVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGA  222 (343)
T ss_pred             CEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCc
Confidence            3455667777888888888888899999999999999996431                358999999999999997643


Q ss_pred             cCCC------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCC
Q 024153          111 SNLA------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPC  177 (271)
Q Consensus       111 ~~~~------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~  177 (271)
                      ....            ...|++.||+++.|++++.+.+ ++||++|+||.++.|.++++||++++|+++|.|.++  +++
T Consensus       223 ~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~--i~~  300 (343)
T PRK00892        223 LDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKS--IPE  300 (343)
T ss_pred             cccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCc--cCC
Confidence            2111            1245666666666666666655 999999999999999999999999999999999998  999


Q ss_pred             -CcEEeccCceEccCC
Q 024153          178 -GEVWGGNPARFLRKL  192 (271)
Q Consensus       178 -~~vv~G~pa~~~~~~  192 (271)
                       +.++.|+||+.++++
T Consensus       301 ~~~~~~G~pa~~~~~~  316 (343)
T PRK00892        301 PGEYSSGIPAQPNKEW  316 (343)
T ss_pred             CCeEEEeecCchHHHH
Confidence             899999999875543

>PRK10502 putative acyl transferase; Provisional

Probab=99.83  E-value=2.2e-19  Score=148.26  Aligned_cols=132  Identities=20%  Similarity=0.291  Sum_probs=107.6

Q ss_pred             hhhhhcCCCceECCCCEECCCcEEec--CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceE
Q 024153           44 TLMNIFDKAPVVNKDVFLAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTI  121 (271)
Q Consensus        44 ~~~~~~~~~~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~  121 (271)
                      .++..++  +.|++++.|++++.|..  ++.||++|.|++++.|.. ...+.||++|.|++++.|....|+.....    
T Consensus        45 ~~lr~~g--a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~-~~~v~IG~~~~I~~~~~I~~~~h~~~~~~----  117 (182)
T PRK10502         45 FLLRLFG--AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN-LGEITIGAHCVISQKSYLCTGSHDYSDPH----  117 (182)
T ss_pred             HHHHHhc--cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc-cCceEECCCcEECCCeEEECCCCCCcCCC----
Confidence            3444554  45899999999998875  599999999999999983 45689999999999999986555321100    


Q ss_pred             EcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153          122 IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       122 Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~  192 (271)
                              ......+++|||+||||++++|.++++||++++|+++|+|.++  +|++++++|+||+++++.
T Consensus       118 --------~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~Pa~~ik~r  178 (182)
T PRK10502        118 --------FDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGNPAVPIRPR  178 (182)
T ss_pred             --------cccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECCcceEeccc
Confidence                    0112245899999999999999999999999999999999998  999999999999998865

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.82  E-value=2.1e-19  Score=157.05  Aligned_cols=145  Identities=16%  Similarity=0.232  Sum_probs=119.7

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC----------------CceEECCCCEECCCCEEecC
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV----------------NSISIGSGTNIQDNSLVHVA  109 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~----------------~~~~IG~~~~I~~~~~I~~~  109 (271)
                      ..++++++.||++++|++++.|..++.||++|.|+++++|..+.                ++++|||++.||.|++|..+
T Consensus       141 ~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrg  220 (338)
T COG1044         141 GAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRG  220 (338)
T ss_pred             CCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccc
Confidence            34677777888888888888888899999999999999997553                57899999999999999887


Q ss_pred             CcCCC------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeC
Q 024153          110 KSNLA------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIP  176 (271)
Q Consensus       110 ~~~~~------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~  176 (271)
                      ..+..            ...|++.||++|.|..++-|.+ +.||++|.||..+.|.++..|+|++.|++.+.|.++  |+
T Consensus       221 a~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~--i~  298 (338)
T COG1044         221 ALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMAS--IT  298 (338)
T ss_pred             cccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccccccc--cC
Confidence            44321            2366777777777777776666 999999999999999999999999999999999998  88


Q ss_pred             CCcEEeccCceEccCC
Q 024153          177 CGEVWGGNPARFLRKL  192 (271)
Q Consensus       177 ~~~vv~G~pa~~~~~~  192 (271)
                      +...+.|.|++..++|
T Consensus       299 ~~~~~gg~P~~p~k~w  314 (338)
T COG1044         299 EPGYSGGIPAQPIKEW  314 (338)
T ss_pred             CCceeccCCCchHHHH
Confidence            8888888988765443

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.82  E-value=8.6e-19  Score=144.43  Aligned_cols=123  Identities=27%  Similarity=0.447  Sum_probs=101.6

Q ss_pred             CCCEECCCcE--EecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           57 KDVFLAPSAS--IIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        57 ~~~~I~~~~~--i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      .+++|.|.+.  ++.++.||+++.|+.+++|. +...++||++|.|+++|+|....|+.+..          ....+..+
T Consensus        58 ~~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~-d~~~I~IGd~v~I~~~v~i~t~~h~~~~~----------~~~~~~~~  126 (183)
T PRK10092         58 TEAYIEPTFRCDYGYNIFLGNNFYANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPLDPV----------ARNSGAEL  126 (183)
T ss_pred             CCEEEeCCEEEeecCCcEEcCCcEECCceEEe-cCceEEECCCCEECCCCEEEcCCCCCChH----------Hcccccee
Confidence            3678888764  46789999999999999987 55678999999999999999766643221          11122223


Q ss_pred             -eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153          135 -HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       135 -~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~  192 (271)
                       ..+.||++||||++++|.++++||++++|+++|+|.++  ||++++++|+||++++.+
T Consensus       127 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~PAr~i~~~  183 (183)
T PRK10092        127 GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL  183 (183)
T ss_pred             cCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEecCcEEeecC
Confidence             45899999999999999999999999999999999998  999999999999998753

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.81  E-value=5.9e-19  Score=135.46  Aligned_cols=119  Identities=26%  Similarity=0.381  Sum_probs=101.4

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      |++++.|+++++|.+++.||++|.|++++.|...   +.||++|.|++++.+...           .+ ....+..++.+
T Consensus         1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~-----------~~-~~~~~~~~~~~   65 (119)
T cd03358           1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEG---VTIEDDVFIGPNVVFTND-----------LY-PRSKIYRKWEL   65 (119)
T ss_pred             CCCCCEECCCcEECCCcEECCCcEECCCcEEeCC---eEECCCcEEcCCeEEecC-----------CC-Ccccccccccc
Confidence            4678888888888889999999999999999654   899999999999998632           11 22233346677


Q ss_pred             eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153          135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR  190 (271)
Q Consensus       135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~  190 (271)
                      .+++||++|+|+.++.+.+++.|++++.|++++++.++  +|+++++.|+||+.++
T Consensus        66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~--i~~~~~~~G~pa~~~~  119 (119)
T cd03358          66 KGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKD--VPPYALVVGNPARIIG  119 (119)
T ss_pred             CCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCc--CCCCeEEecCcceecC
Confidence            88999999999999999999999999999999999997  9999999999999764

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.81  E-value=5.5e-19  Score=147.06  Aligned_cols=145  Identities=18%  Similarity=0.224  Sum_probs=109.8

Q ss_pred             hcCCCceECCCCEECCCcEE----ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEc
Q 024153           48 IFDKAPVVNKDVFLAPSASI----IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG  123 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i----~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig  123 (271)
                      ..+....+++++++..++.+    .+.+.||+++.|++++.|.. ...+.||++|.|++++.|....+....  +. ..-
T Consensus        39 ~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~-~~~v~IG~~v~Ig~~v~I~~~~hg~~~--~~-~~~  114 (192)
T PRK09677         39 RNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIAC-IESITIGRDTLIASKVFITDHNHGSFK--HS-DDF  114 (192)
T ss_pred             cCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEcc-CceEEECCCCEECCCeEEECCCCcccc--cc-ccc
Confidence            34666778888888888887    35789999999999998873 345899999999999998764331000  00 000


Q ss_pred             CCcEEC---cCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          124 DNVTVG---HSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       124 ~~~~i~---~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      .+..+.   ......+++||++|+||.++.|.++++||++|+|+++|+|.++  +|++++++|+||++++.+++....
T Consensus       115 ~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~~~~~  190 (192)
T PRK09677        115 SSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNHETKL  190 (192)
T ss_pred             cccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCccccc
Confidence            001111   1122356899999999999999999999999999999999997  999999999999999998875543

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.80  E-value=3.3e-19  Score=145.52  Aligned_cols=122  Identities=25%  Similarity=0.469  Sum_probs=100.1

Q ss_pred             ECCCCEECCCcEE--ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153           55 VNKDVFLAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA  132 (271)
Q Consensus        55 i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~  132 (271)
                      ++++++|.+++.+  ..++.||+++.|+++++|. +.+.+.||++|.|+++|+|....+..+.       .+..   .+.
T Consensus        45 ~~~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~-~~~~i~IG~~v~Ig~~~~I~~~~h~~~~-------~~~~---~~~  113 (169)
T cd03357          45 VGENVYIEPPFHCDYGYNIHIGDNFYANFNCTIL-DVAPVTIGDNVLIGPNVQIYTAGHPLDP-------EERN---RGL  113 (169)
T ss_pred             cCCCCEEcCCEEEEeCCcCEECCCceEcCCEEEe-ccCcEEECCCCEECCCCEEEeCCCCCCh-------hHcc---ccc
Confidence            5778888888665  4579999999999999887 3356999999999999999876553221       1111   122


Q ss_pred             -EEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          133 -VLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       133 -~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                       ..++++||++||||.+++|.++++||++|+||++|+|.++  ||+++++.|+||+++
T Consensus       114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~PAkvi  169 (169)
T cd03357         114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGNPARVI  169 (169)
T ss_pred             eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEccccEEC
Confidence             2356999999999999999999999999999999999998  999999999999875

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.79  E-value=2.5e-18  Score=135.92  Aligned_cols=129  Identities=17%  Similarity=0.246  Sum_probs=108.3

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCc
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV  126 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~  126 (271)
                      ..+++.+.|++++.|++.+++..++.||+++.|++++.|..+   +.||++|.|++++.|......  ...+++.|++++
T Consensus         8 ~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~igg~~~~--~~~~~v~Ig~~~   82 (139)
T cd03350           8 AIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSC---AQIGKNVHLSAGAVIGGVLEP--LQATPVIIEDDV   82 (139)
T ss_pred             cEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCC---CEECCCCEECCCCEECCcccc--cccCCeEECCCC
Confidence            345677778888888888888888889999999988888755   799999999999998753211  123578999999


Q ss_pred             EECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC-cEEeccC
Q 024153          127 TVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG-EVWGGNP  185 (271)
Q Consensus       127 ~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~-~vv~G~p  185 (271)
                      +|++++.+ .+++||+++.|+++++|.++++|+++   +++++|.++  +|++ ++++|+|
T Consensus        83 ~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~--~~~~~~~~~g~~  138 (139)
T cd03350          83 FIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGR--VPPGSVVVAGSL  138 (139)
T ss_pred             EECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecc--cCCCCEEecccC
Confidence            99999999 46999999999999999999999998   999999998  9999 8888887

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.79  E-value=3.7e-18  Score=142.21  Aligned_cols=135  Identities=20%  Similarity=0.361  Sum_probs=80.8

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------------CceEECCCCEECCCCEEecCCcC---
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISIGSGTNIQDNSLVHVAKSN---  112 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~~~IG~~~~I~~~~~I~~~~~~---  112 (271)
                      +.+.+.|+++++|+|++.|.+++.||++|.|++++.|....             ..+.||+++.|++++.|.....-   
T Consensus        12 ~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~   91 (193)
T cd03353          12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG   91 (193)
T ss_pred             EcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC
Confidence            44556666677777777666666677777666666665320             01223333333333322211000   


Q ss_pred             ---------------------CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153          113 ---------------------LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus       113 ---------------------~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                                           +....+++.||+++.|++++.+.        +++|||+||||.++++.++++||++++|
T Consensus        92 ~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i  171 (193)
T cd03353          92 VHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATI  171 (193)
T ss_pred             CEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEE
Confidence                                 00011234555566666665552        4678888888888888888888888888


Q ss_pred             ccCcEecCCceeCCCcEEeccC
Q 024153          164 AAGALVRQNTKIPCGEVWGGNP  185 (271)
Q Consensus       164 g~~svV~~~~~I~~~~vv~G~p  185 (271)
                      +++|+|.++  +|+++++.|.|
T Consensus       172 ~~gs~V~~~--v~~~~~v~~~~  191 (193)
T cd03353         172 AAGSTITKD--VPPGALAIARA  191 (193)
T ss_pred             CCCCEEccc--cCCCCEEEecc
Confidence            888888887  88888887764

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.78  E-value=4.8e-18  Score=134.31  Aligned_cols=120  Identities=24%  Similarity=0.345  Sum_probs=103.6

Q ss_pred             CEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe---
Q 024153           59 VFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH---  135 (271)
Q Consensus        59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~---  135 (271)
                      ..|+|++.|++++.|++++.|++++.+..+   +.||++|.|+.++.|..          ++.||++|.|++++.+.   
T Consensus         2 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~~~igg~~   68 (139)
T cd03350           2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNIG---AYVDEGTMVDSWATVGS----------CAQIGKNVHLSAGAVIGGVL   68 (139)
T ss_pred             cccCCCcEECCCCEECCCCEECCCCEEccC---CEECCCeEEcCCCEECC----------CCEECCCCEECCCCEECCcc
Confidence            356777777777778888888888887644   67888899988888863          68899999999999885   


Q ss_pred             ------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHH
Q 024153          136 ------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEE  195 (271)
Q Consensus       136 ------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~  195 (271)
                            +++||++|+|+++++|.++++||++++|+++++|.++++|+++    |..+.++|++++.
T Consensus        69 ~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~----~~~~~v~~~~~~~  130 (139)
T cd03350          69 EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR----ETGEIYYGRVPPG  130 (139)
T ss_pred             cccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc----CcccEEecccCCC
Confidence                  4899999999999999999999999999999999999999998    7778999998875

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.77  E-value=6.8e-18  Score=144.91  Aligned_cols=113  Identities=20%  Similarity=0.366  Sum_probs=85.7

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-
Q 024153           56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-  134 (271)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-  134 (271)
                      ..+++|.|++.+..++.||+++.|+++ .+...   +.||++|.|..+++|..          ++.||++|.|+.++.| 
T Consensus        98 ~~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vnig---a~IGeGt~I~~~a~IG~----------~v~IG~nv~I~~g~~Ig  163 (269)
T TIGR00965        98 KAGFRVVPGAAVRQGAFIAKNVVLMPS-YVNIG---AYVDEGTMVDTWATVGS----------CAQIGKNVHLSGGVGIG  163 (269)
T ss_pred             cCCEEECCCcEECCCcEECCCCEEeee-EEcCC---cEECCCCEECCCcEECC----------CCEECCCCEEcCCcccC
Confidence            346777777777777777777777765 33322   57888888888887763          6788888888888877 


Q ss_pred             --------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCc-------------eeCCCcEEe
Q 024153          135 --------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT-------------KIPCGEVWG  182 (271)
Q Consensus       135 --------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~-------------~I~~~~vv~  182 (271)
                              ++++|||+|+||++|.|.++++||++|+||++++|.+++             .||+++++.
T Consensus       164 G~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~  232 (269)
T TIGR00965       164 GVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVV  232 (269)
T ss_pred             CCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEe
Confidence                    447888888888888888888888888888888887755             478888886

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.77  E-value=1e-17  Score=139.68  Aligned_cols=115  Identities=34%  Similarity=0.588  Sum_probs=104.8

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-
Q 024153           57 KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-  135 (271)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-  135 (271)
                      ..+.+++.+.+.+++.||+++.|+++++|.++   +.||++|.|++++.|..          ++.||+++.|+.++.+. 
T Consensus        86 ~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~  152 (201)
T TIGR03570        86 FATLIHPSAIVSPSASIGEGTVIMAGAVINPD---VRIGDNVIINTGAIVEH----------DCVIGDYVHIAPGVTLSG  152 (201)
T ss_pred             ceEEecCCeEECCCCEECCCCEECCCCEECCC---CEECCCcEECCCCEEcC----------CCEECCCCEECCCCEEeC
Confidence            34677788888888889999999999998755   89999999999999963          78999999999999997 


Q ss_pred             ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCc
Q 024153          136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPA  186 (271)
Q Consensus       136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa  186 (271)
                      ++.||++|+|+.++.+.+++.||++|+|+++++|.++  +|++++|.|+||
T Consensus       153 ~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g~pa  201 (201)
T TIGR03570       153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVVVGVPA  201 (201)
T ss_pred             CcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEEEeccC
Confidence            5999999999999999999999999999999999997  999999999997

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.77  E-value=2.6e-17  Score=133.50  Aligned_cols=121  Identities=19%  Similarity=0.264  Sum_probs=110.6

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcE
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVT  127 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~  127 (271)
                      .+.+.+.|++++.|++++.|.+++.||++|.|++++.|.+.   +.||++|.|++++.|.           ++.|++++.
T Consensus        13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~-----------~siig~~~~   78 (163)
T cd05636          13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGY---TVLGDGCVVGNSVEVK-----------NSIIMDGTK   78 (163)
T ss_pred             EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCC---CEECCCCEECCCcEEe-----------eeEecCCCE
Confidence            45567889999999999999999999999999999999865   7999999999999997           689999999


Q ss_pred             ECcCcEEeceeeCCCcEEccCcEEcc------------------------CcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153          128 VGHSAVLHGCTVEDEAFVGMGATLLD------------------------GVYVEKHAMVAAGALVRQNTKIPCGEVWG  182 (271)
Q Consensus       128 i~~~~~i~~~~Ig~~~~Ig~~~~I~~------------------------~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~  182 (271)
                      |++++.+.++.|++++.|++++.+..                        ++.||++++|+.++.+.+++.|++++++.
T Consensus        79 I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~  157 (163)
T cd05636          79 VPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVY  157 (163)
T ss_pred             eccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEEC
Confidence            99999999999999999999998843                        68999999999999999999999999985

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.76  E-value=1.3e-17  Score=137.87  Aligned_cols=115  Identities=34%  Similarity=0.590  Sum_probs=105.2

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe
Q 024153           56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH  135 (271)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~  135 (271)
                      .....+++.+.+.+++.+|.++.|+++++|..+   ++||++|.|++++.|..          ++.||++|.|+.++.+.
T Consensus        82 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~  148 (197)
T cd03360          82 RFATLIHPSAVVSPSAVIGEGCVIMAGAVINPD---ARIGDNVIINTGAVIGH----------DCVIGDFVHIAPGVVLS  148 (197)
T ss_pred             ccceEECCCeEECCCCEECCCCEEcCCCEECCC---CEECCCeEECCCCEECC----------CCEECCCCEECCCCEEc
Confidence            345678888888888999999999999999865   89999999999999963          78999999999999996


Q ss_pred             c-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccC
Q 024153          136 G-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP  185 (271)
Q Consensus       136 ~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~p  185 (271)
                      + ++||++|+||.++.|.++++||++++|+++++|.++  +++++++.|+|
T Consensus       149 ~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~g~p  197 (197)
T cd03360         149 GGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPDGSVVVGNP  197 (197)
T ss_pred             CCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC--CCCCCEEEecC
Confidence            5 999999999999999999999999999999999998  99999999987

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=99.76  E-value=1.6e-17  Score=131.98  Aligned_cols=128  Identities=26%  Similarity=0.368  Sum_probs=95.7

Q ss_pred             eEECCCCEEcc-CcEEecCCCceEECCCCEECCCCEEecC-CcCCCC-CccceEEcCCcE-----ECcCcEEeceeeCCC
Q 024153           71 VQVGRGSSIWY-GCVLRGDVNSISIGSGTNIQDNSLVHVA-KSNLAG-KVLPTIIGDNVT-----VGHSAVLHGCTVEDE  142 (271)
Q Consensus        71 v~IG~~~~I~~-~~~I~~~~~~~~IG~~~~I~~~~~I~~~-~~~~~~-~~~~~~Ig~~~~-----i~~~~~i~~~~Ig~~  142 (271)
                      +.||+++.|++ .+.+..  ..+.||++|.|++++.|... .|++.. ...+..++++..     ........+++||++
T Consensus         2 ~~iG~~s~i~~~~~~~~~--~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~   79 (145)
T cd03349           2 ISVGDYSYGSGPDCDVGG--DKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGND   79 (145)
T ss_pred             EEEeCceeeCCCCceEeC--CCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCC
Confidence            46788888887 444442  45899999999999999877 554331 112233333221     122233456999999


Q ss_pred             cEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHHH
Q 024153          143 AFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFISQ  202 (271)
Q Consensus       143 ~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~~  202 (271)
                      |+||.++.|.++++||++|+|+++|+|.++  +|++++++|+||++++. ++++.+..+.+
T Consensus        80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~Pa~~i~~~~~~~~~~~~~~  138 (145)
T cd03349          80 VWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGNPAKVIRYRFDEETIERLLA  138 (145)
T ss_pred             CEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEecCCEeehhhCCHHHHHHHHH
Confidence            999999999999999999999999999998  99999999999999986 66666655543

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.76  E-value=2.3e-17  Score=138.69  Aligned_cols=61  Identities=8%  Similarity=0.167  Sum_probs=51.3

Q ss_pred             ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ++.||++++|+.++.+.++++||++|+|+++++|.++++|++++++.+. +.+.+++++..+
T Consensus       132 ~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~-s~v~~~~~~~~~  192 (205)
T cd03352         132 NVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAG-SGVTSIVPPGEY  192 (205)
T ss_pred             CCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCC-CEEeeECCCCCE
Confidence            4677777777777777788999999999999999999999999998765 888888877665

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.75  E-value=1.4e-17  Score=155.62  Aligned_cols=142  Identities=23%  Similarity=0.347  Sum_probs=98.2

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------------CceEECCCCEECCCCEEecCCc----
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISIGSGTNIQDNSLVHVAKS----  111 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~~~IG~~~~I~~~~~I~~~~~----  111 (271)
                      +++.+.|++++.|++++.|.+++.||++|.|++++.|.+..             .++.||++|.|++++.|.....    
T Consensus       258 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~  337 (451)
T TIGR01173       258 IRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG  337 (451)
T ss_pred             ECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC
Confidence            45667788899999999999889999999998888876320             0122333333333333221100    


Q ss_pred             --CC-----------C-------CCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153          112 --NL-----------A-------GKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus       112 --~~-----------~-------~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                        ..           .       ...+++.||++|.|+.++.+.        +++|||+||||.++.|.++++||++++|
T Consensus       338 ~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i  417 (451)
T TIGR01173       338 VHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATI  417 (451)
T ss_pred             cEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEE
Confidence              00           0       001246667777777777663        4889999999999999999999999999


Q ss_pred             ccCcEecCCceeCCCcEEeccCceEc-cCC
Q 024153          164 AAGALVRQNTKIPCGEVWGGNPARFL-RKL  192 (271)
Q Consensus       164 g~~svV~~~~~I~~~~vv~G~pa~~~-~~~  192 (271)
                      +++|+|.++  ||+++++.|.|+... +++
T Consensus       418 ~~g~~v~~~--v~~~~~~~~~~~~~~~~~~  445 (451)
T TIGR01173       418 AAGSTVTKD--VPEGALAISRARQRNIEGW  445 (451)
T ss_pred             ccCCEECcc--CCCCcEEEccCceeecccc
Confidence            999999998  999999998776554 444

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.74  E-value=3.4e-17  Score=123.66  Aligned_cols=105  Identities=23%  Similarity=0.318  Sum_probs=84.9

Q ss_pred             CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCc
Q 024153           70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGA  149 (271)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~  149 (271)
                      ++.||+++.|+++++|.. ...++||++|.|++++.|....|.+       ...+..     .....+.||++|||+.++
T Consensus         3 ~i~iG~~~~I~~~~~i~~-~~~i~IG~~~~I~~~~~I~~~~h~~-------~~~~~~-----~~~~~v~Ig~~~~ig~~~   69 (107)
T cd05825           3 NLTIGDNSWIGEGVWIYN-LAPVTIGSDACISQGAYLCTGSHDY-------RSPAFP-----LITAPIVIGDGAWVAAEA   69 (107)
T ss_pred             eEEECCCCEECCCCEEee-CCceEECCCCEECCCeEeecCCCCC-------CcCccc-----eecCCEEECCCCEECCCC
Confidence            467888888888888873 3568999999999999997654421       111111     122458999999999999


Q ss_pred             EEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          150 TLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       150 ~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                      .|.++++||++|+|+++|+|.++  +++++++.|+||+++
T Consensus        70 ~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~G~Pa~~~  107 (107)
T cd05825          70 FVGPGVTIGEGAVVGARSVVVRD--LPAWTVYAGNPAVPV  107 (107)
T ss_pred             EECCCCEECCCCEECCCCEEeCc--CCCCCEEECCccEeC
Confidence            99999999999999999999998  999999999999874

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.73  E-value=2.3e-17  Score=147.46  Aligned_cols=135  Identities=21%  Similarity=0.362  Sum_probs=107.1

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------------CceEECCCCEECCCCEEecCCcCCC
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISIGSGTNIQDNSLVHVAKSNLA  114 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~~~IG~~~~I~~~~~I~~~~~~~~  114 (271)
                      ++...+.|+.++.|.|++.|.|++.||++|.|+++|+|....             ....||++|.||+++.+.+++.-..
T Consensus       264 ~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~  343 (460)
T COG1207         264 YIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGA  343 (460)
T ss_pred             EEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccC
Confidence            567788899999999999999999999999999998776321             2344555566665555554432110


Q ss_pred             ------------------------CCccceEEcCCcEECcCcEEec--------eeeCCCcEEccCcEEccCcEECCCcE
Q 024153          115 ------------------------GKVLPTIIGDNVTVGHSAVLHG--------CTVEDEAFVGMGATLLDGVYVEKHAM  162 (271)
Q Consensus       115 ------------------------~~~~~~~Ig~~~~i~~~~~i~~--------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~  162 (271)
                                              ...+++.||++|.||++++..+        ++|||+++||+++.+...++||+++.
T Consensus       344 ~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~  423 (460)
T COG1207         344 DVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGAT  423 (460)
T ss_pred             CCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcE
Confidence                                    1156778888888888887733        99999999999999999999999999


Q ss_pred             EccCcEecCCceeCCCcEEecc
Q 024153          163 VAAGALVRQNTKIPCGEVWGGN  184 (271)
Q Consensus       163 Ig~~svV~~~~~I~~~~vv~G~  184 (271)
                      ||+||+|++|  ||++++..+.
T Consensus       424 iaAGStIT~D--Vp~~aLai~R  443 (460)
T COG1207         424 IAAGSTITKD--VPEGALAISR  443 (460)
T ss_pred             EcccceEccc--CCCCceeEee
Confidence            9999999999  9999998865

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=8.9e-18  Score=157.01  Aligned_cols=134  Identities=19%  Similarity=0.339  Sum_probs=80.3

Q ss_pred             CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCc------------------C
Q 024153           51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKS------------------N  112 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~------------------~  112 (271)
                      +.+.|++++.|++++.|++++.||++|.|++++.|.+    +.||++|.|++++.|.....                  .
T Consensus       267 ~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~----~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~  342 (446)
T PRK14353        267 YDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEG----AHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLG  342 (446)
T ss_pred             CceEECCCCEECCCCEECCCCEECCCCEECCCeEEec----cEECCCcEECCCeEEeccceecCCeEEcCceEEeceEEC
Confidence            4455666666666666666666666666655554432    34444444444444431100                  0


Q ss_pred             ------CCCCccceEEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC
Q 024153          113 ------LAGKVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG  178 (271)
Q Consensus       113 ------~~~~~~~~~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~  178 (271)
                            +.....++.||++|.|++++++        +++.||++|+||++++|.++++||++++||++|+|.++  +|++
T Consensus       343 ~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~--v~~~  420 (446)
T PRK14353        343 EGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED--VPDD  420 (446)
T ss_pred             CCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc--CCCC
Confidence                  0001234566677777776654        24777788888888878777888888888888888777  7787


Q ss_pred             cEEeccCceEcc
Q 024153          179 EVWGGNPARFLR  190 (271)
Q Consensus       179 ~vv~G~pa~~~~  190 (271)
                      +++.|.|....+
T Consensus       421 ~~~~g~~~~~~~  432 (446)
T PRK14353        421 ALALGRARQETK  432 (446)
T ss_pred             CEEEecCceEec
Confidence            777777665543

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=4.7e-17  Score=152.20  Aligned_cols=141  Identities=18%  Similarity=0.262  Sum_probs=102.6

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC----CC--------ceEECCCCEECCCCEEecCC-----
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD----VN--------SISIGSGTNIQDNSLVHVAK-----  110 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~----~~--------~~~IG~~~~I~~~~~I~~~~-----  110 (271)
                      .+++.+.|++++.|+|++.|.+++.||++|.|+++++|...    ..        ...||+++.|++++.|....     
T Consensus       251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~  330 (448)
T PRK14357        251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKS  330 (448)
T ss_pred             EEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCC
Confidence            45667778888888888888888888888888888765311    00        11222233333333321100     


Q ss_pred             ------------------c-CCCCCccceEEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153          111 ------------------S-NLAGKVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus       111 ------------------~-~~~~~~~~~~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                                        . .+.....++.||++|.|++++.+        ++++|||+++||.+++|.++++||++++|
T Consensus       331 ~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i  410 (448)
T PRK14357        331 VKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALI  410 (448)
T ss_pred             cEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEE
Confidence                              0 00011236788899999988876        35999999999999999999999999999


Q ss_pred             ccCcEecCCceeCCCcEEeccCceEcc
Q 024153          164 AAGALVRQNTKIPCGEVWGGNPARFLR  190 (271)
Q Consensus       164 g~~svV~~~~~I~~~~vv~G~pa~~~~  190 (271)
                      +++|+|.++  ||+++++.|+|.++++
T Consensus       411 ~ag~~v~~~--v~~~~~~~g~~~~~~~  435 (448)
T PRK14357        411 GAGSVITED--VPPYSLALGRARQIVK  435 (448)
T ss_pred             cCCCEECCc--CCCCcEEEccccEEec
Confidence            999999998  9999999999998875

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=6.4e-17  Score=152.70  Aligned_cols=145  Identities=19%  Similarity=0.322  Sum_probs=108.8

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC------------CCceEECCCCEECCCCEEecC------
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD------------VNSISIGSGTNIQDNSLVHVA------  109 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~------------~~~~~IG~~~~I~~~~~I~~~------  109 (271)
                      ++.+.+.|++++.|+|++.|.+++.||++|.|+++++|.+.            ..++.||++|.|++++.+...      
T Consensus       267 ~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~  346 (482)
T PRK14352        267 WIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEE  346 (482)
T ss_pred             EEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCC
Confidence            34567789999999999999999999999999998887631            012334444444444443321      


Q ss_pred             Cc--C----------------CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153          110 KS--N----------------LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus       110 ~~--~----------------~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                      ..  .                +....+++.||++|.||+++.+.        ++.|||+|+||.++.|.++++||++++|
T Consensus       347 ~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~i  426 (482)
T PRK14352        347 GKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYT  426 (482)
T ss_pred             CEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEE
Confidence            10  0                00112467888999999998774        3899999999999999999999999999


Q ss_pred             ccCcEecCCceeCCCcEE-eccCceEccCCCH
Q 024153          164 AAGALVRQNTKIPCGEVW-GGNPARFLRKLTE  194 (271)
Q Consensus       164 g~~svV~~~~~I~~~~vv-~G~pa~~~~~~~~  194 (271)
                      +++|+|.++  |++++++ .|.|++.++.+.+
T Consensus       427 gags~v~~~--v~~~~~~~~~~p~~~~~~~~~  456 (482)
T PRK14352        427 GAGTVIRED--VPPGALAVSEGPQRNIEGWVQ  456 (482)
T ss_pred             CCCCEEcCC--CCCCcEEEecccccccccccc
Confidence            999999998  8999875 4899999887643

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.73  E-value=3.4e-17  Score=125.18  Aligned_cols=140  Identities=16%  Similarity=0.316  Sum_probs=125.0

Q ss_pred             CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC--CCccceEEcCCcEECcCcEEeceeeCCCcEEcc
Q 024153           70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--GKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGM  147 (271)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~--~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~  147 (271)
                      ++.+.-.+++.++++|+||..++.||++|.+++++.|...-..|+  ....+..||++++|++.|++....||..+.+|.
T Consensus        33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk  112 (184)
T KOG3121|consen   33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK  112 (184)
T ss_pred             eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence            567878888999999999999999999999999999987554443  235688999999999999999999999999999


Q ss_pred             CcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHH
Q 024153          148 GATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSN  209 (271)
Q Consensus       148 ~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~  209 (271)
                      +++|+.+|++.|.|.|-.++++.+++.+|+++.++|+|+.+....|......+-...+.|++
T Consensus       113 naviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~~~G~~P~ctq~lMi~~tksyY~  174 (184)
T KOG3121|consen  113 NAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQVVGTEPRCTQNLMIEATKSYYD  174 (184)
T ss_pred             ceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCceeeccCchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988887776666666654

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=99.73  E-value=6.5e-17  Score=134.20  Aligned_cols=132  Identities=22%  Similarity=0.323  Sum_probs=102.3

Q ss_pred             ECCCCEECCCcEE--e-cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153           55 VNKDVFLAPSASI--I-GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS  131 (271)
Q Consensus        55 i~~~~~I~~~~~i--~-~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~  131 (271)
                      ....+.+.+...+  + ..+.+|.+|.++.++.+. ....++||+++.++++|.|....|..+..       .. ..+..
T Consensus        49 ~~~~~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~-~~~~i~ig~~~~i~~~v~i~~~~h~~~~~-------~~-~~~~~  119 (190)
T COG0110          49 IGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPNVTIYTNSHPGDFV-------TA-NIGAL  119 (190)
T ss_pred             cCCccEECCCEEEecCCcceEECCeeEEcCCcEEE-ecCCeEECCCceECCCcEEecCCCCCChh-------hc-ccCCc
Confidence            4444666666555  3 578999999999999975 44668999999999999999765532111       00 00112


Q ss_pred             cEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          132 AVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       132 ~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      .....++||++||||++++|++|++||++++||++|+|++|  +|+++++.|+||++++.......
T Consensus       120 ~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkd--vp~~~iv~G~Pa~vir~~~~~~~  183 (190)
T COG0110         120 VGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKD--VPPYGIVAGNPARVIRKRDVVAK  183 (190)
T ss_pred             eecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCc--cCCCeEEeCCcceEEEecchhhh
Confidence            22345999999999999999999999999999999999998  99999999999999987655443

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.72  E-value=6e-17  Score=140.27  Aligned_cols=86  Identities=24%  Similarity=0.379  Sum_probs=69.4

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ  171 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~  171 (271)
                      ++||++|.||++|+|..          +++||...   ..+....++||++|+||++|+|.++++||++++||++|+|.+
T Consensus       162 ivIG~~a~IGdnv~I~~----------~VtiGg~~---~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~  228 (273)
T PRK11132        162 IVIGETAVIENDVSILQ----------SVTLGGTG---KTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQ  228 (273)
T ss_pred             eEECCCCEECCCCEEcC----------CcEEecCc---ccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECc
Confidence            67777777777777752          45555421   111123479999999999999999999999999999999999


Q ss_pred             CceeCCCcEEeccCceEccCC
Q 024153          172 NTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       172 ~~~I~~~~vv~G~pa~~~~~~  192 (271)
                      +  ||+++++.|+||++++..
T Consensus       229 d--Vp~~~~v~G~PArvi~~~  247 (273)
T PRK11132        229 P--VPPHTTAAGVPARIVGKP  247 (273)
T ss_pred             c--cCCCcEEEecCcEEeCcc
Confidence            8  999999999999998754

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.72  E-value=8.5e-17  Score=139.26  Aligned_cols=79  Identities=29%  Similarity=0.512  Sum_probs=47.0

Q ss_pred             ceEEcCCcEECcCcEEec---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCce-------------eC
Q 024153          119 PTIIGDNVTVGHSAVLHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-------------IP  176 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~-------------I~  176 (271)
                      .+.||++|+|++++.+++         ++|||+|+||.++.|..+++||++|+|+++++|.+++.             ||
T Consensus       150 ~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp  229 (272)
T PRK11830        150 CAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVP  229 (272)
T ss_pred             CCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecC
Confidence            445555555555555432         55666666666666655566666665555555554332             67


Q ss_pred             CCcEEe-c-----------cCceEccCCCHHHH
Q 024153          177 CGEVWG-G-----------NPARFLRKLTEEEM  197 (271)
Q Consensus       177 ~~~vv~-G-----------~pa~~~~~~~~~~~  197 (271)
                      +++++. |           .||++++.++....
T Consensus       230 ~~svvv~g~~~~~~~~~~~~~~~i~~~~~~~~~  262 (272)
T PRK11830        230 AGSVVVPGSLPSKDGGYSLYCAVIVKKVDAKTR  262 (272)
T ss_pred             CCcEEecCcccccCCCcCCcCcEEEEEccccch
Confidence            787776 6           37888887765544

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.71  E-value=1.3e-16  Score=149.52  Aligned_cols=138  Identities=25%  Similarity=0.355  Sum_probs=96.4

Q ss_pred             ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------------CceEECCCCEECCCCEEecCCcC-------
Q 024153           53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISIGSGTNIQDNSLVHVAKSN-------  112 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~~~IG~~~~I~~~~~I~~~~~~-------  112 (271)
                      +.+++++.|++++.|.+++.||++|.|+++++|.+..             .++.||++|.|++++.|.....-       
T Consensus       266 ~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig  345 (456)
T PRK09451        266 LTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVG  345 (456)
T ss_pred             EEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceec
Confidence            4567788888888887778888888887777775210             01223333333333333221100       


Q ss_pred             -----------------CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEEccCc
Q 024153          113 -----------------LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGA  167 (271)
Q Consensus       113 -----------------~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~s  167 (271)
                                       +....+++.||++|.||+++.+.        +++|||+|+||.++.|.++++||++++|+++|
T Consensus       346 ~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs  425 (456)
T PRK09451        346 NFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGT  425 (456)
T ss_pred             cceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCC
Confidence                             00112356788888888887663        37899999999999999999999999999999


Q ss_pred             EecCCceeCCCcEEe-ccCceEccCC
Q 024153          168 LVRQNTKIPCGEVWG-GNPARFLRKL  192 (271)
Q Consensus       168 vV~~~~~I~~~~vv~-G~pa~~~~~~  192 (271)
                      +|.++  ||+++++. |.|++.++++
T Consensus       426 ~v~~~--v~~~~~~~~~~~~~~~~~~  449 (456)
T PRK09451        426 TVTRD--VAENELVISRVPQRHIQGW  449 (456)
T ss_pred             EEccc--cCCCCEEEeccCceecccc
Confidence            99998  99999885 5788888665

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.71  E-value=2.3e-16  Score=148.14  Aligned_cols=135  Identities=25%  Similarity=0.473  Sum_probs=100.6

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC---------------
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN---------------  112 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~---------------  112 (271)
                      .+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+    +.||++|.|++++++....-.               
T Consensus       264 ~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~  339 (459)
T PRK14355        264 YIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKG----CRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGT  339 (459)
T ss_pred             EECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeC----CEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCC
Confidence            3556677888888889999999999999999999988863    466666655555544321000               


Q ss_pred             --------------------------CCCCccceEEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEEC
Q 024153          113 --------------------------LAGKVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVE  158 (271)
Q Consensus       113 --------------------------~~~~~~~~~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig  158 (271)
                                                +....+++.||++|.||+++.+        +++.||++|+||.++.|.++++||
T Consensus       340 ~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig  419 (459)
T PRK14355        340 ELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVG  419 (459)
T ss_pred             EeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEEC
Confidence                                      0001234577777888877765        247899999999999999999999


Q ss_pred             CCcEEccCcEecCCceeCCCcEEeccCceE
Q 024153          159 KHAMVAAGALVRQNTKIPCGEVWGGNPARF  188 (271)
Q Consensus       159 ~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~  188 (271)
                      ++++|+++|+|.++  ||+++++.|.+...
T Consensus       420 ~~~~i~a~s~v~~~--v~~~~~~~~~~~~~  447 (459)
T PRK14355        420 RNSLIAAGTTVTKD--VPPDSLAIARSPQV  447 (459)
T ss_pred             CCCEECCCCEEccc--CCCCcEEEecccee
Confidence            99999999999988  99999999865443

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.70  E-value=1.2e-16  Score=149.63  Aligned_cols=135  Identities=19%  Similarity=0.300  Sum_probs=101.6

Q ss_pred             CCceECCCCEECCCcEEec---------------CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC---
Q 024153           51 KAPVVNKDVFLAPSASIIG---------------DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN---  112 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~---------------~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~---  112 (271)
                      ..+.|++++.|++++.|..               ++.||++|.|++++.|.++   +.||++|.|++++.|......   
T Consensus       279 ~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~~~~i~~~~  355 (450)
T PRK14360        279 GNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPE---AQIGSNCRIGNFVEIKKSQLGEGS  355 (450)
T ss_pred             CCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCC---CEEeCceEECCCEEEeccccCCCc
Confidence            3455666666666655531               2445667777777777644   677888888877776432111   


Q ss_pred             ---CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153          113 ---LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW  181 (271)
Q Consensus       113 ---~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv  181 (271)
                         +....+++.||++|.||+++.+.        +++||++|+||.++.|.++++||++++|+++|+|.++  ||+++++
T Consensus       356 ~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~--~~~~~~~  433 (450)
T PRK14360        356 KVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKD--VPDNSLA  433 (450)
T ss_pred             EeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECcc--CCCCCEE
Confidence               11123467899999999998874        5899999999999999999999999999999999998  9999999


Q ss_pred             eccCceEcc
Q 024153          182 GGNPARFLR  190 (271)
Q Consensus       182 ~G~pa~~~~  190 (271)
                      .|+|++.++
T Consensus       434 ~g~~~~~~~  442 (450)
T PRK14360        434 IARSRQVIK  442 (450)
T ss_pred             Eeccceeec
Confidence            998887663

>PLN02694 serine O-acetyltransferase

Probab=99.70  E-value=1.4e-16  Score=138.09  Aligned_cols=85  Identities=27%  Similarity=0.414  Sum_probs=71.8

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ  171 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~  171 (271)
                      ++||++|.|+++|+|..          ++++|..   +..+...+++||++|+||++++|.++++||++|+||++|+|.+
T Consensus       181 VVIGe~a~IGdnv~I~~----------~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~k  247 (294)
T PLN02694        181 VVIGETAVIGNNVSILH----------HVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLI  247 (294)
T ss_pred             eEECCCcEECCCCEEee----------cceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECC
Confidence            67777888888877763          4556543   3344456689999999999999999999999999999999999


Q ss_pred             CceeCCCcEEeccCceEccC
Q 024153          172 NTKIPCGEVWGGNPARFLRK  191 (271)
Q Consensus       172 ~~~I~~~~vv~G~pa~~~~~  191 (271)
                      +  ||++++++|+||++++.
T Consensus       248 d--VP~~~~v~G~PAkiv~~  265 (294)
T PLN02694        248 D--VPPRTTAVGNPARLVGG  265 (294)
T ss_pred             c--CCCCcEEEccCcEEEcc
Confidence            8  99999999999999875

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.69  E-value=4.4e-16  Score=145.60  Aligned_cols=38  Identities=26%  Similarity=0.452  Sum_probs=29.5

Q ss_pred             cceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCc
Q 024153          118 LPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGV  155 (271)
Q Consensus       118 ~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v  155 (271)
                      +++.||++|+|+.++.+. ++.||++++||++++|...+
T Consensus       379 ~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v  417 (446)
T PRK14353        379 HRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDV  417 (446)
T ss_pred             CCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccC
Confidence            367888888888888775 48888888888888887653

>PLN02739 serine acetyltransferase

Probab=99.68  E-value=6.3e-16  Score=136.56  Aligned_cols=57  Identities=33%  Similarity=0.545  Sum_probs=53.5

Q ss_pred             ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCH
Q 024153          136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE  194 (271)
Q Consensus       136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~  194 (271)
                      .++||++|+||++++|.++++||++++||+||+|.++  ||+++++.|+||++++....
T Consensus       257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAriI~~~~~  313 (355)
T PLN02739        257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKLIGFVDE  313 (355)
T ss_pred             CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEEeccCCc
Confidence            4789999999999999999999999999999999998  99999999999999987653

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.68  E-value=8.4e-16  Score=144.16  Aligned_cols=139  Identities=18%  Similarity=0.306  Sum_probs=94.2

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC------------CceEECCCCEECCCCEEecCCc----
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV------------NSISIGSGTNIQDNSLVHVAKS----  111 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~------------~~~~IG~~~~I~~~~~I~~~~~----  111 (271)
                      ++++.+.|++++.|++++.|.+++.||++|.|++++.|.+..            ..+.||++|.|++++.|.....    
T Consensus       261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~  340 (458)
T PRK14354        261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEE  340 (458)
T ss_pred             EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCC
Confidence            456667788888888888888889999999998888775320            0123444444444444432110    


Q ss_pred             --C------------------CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153          112 --N------------------LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus       112 --~------------------~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                        -                  +....+++.||++|.|+.++.+.        .++|||++++|.++.|.++++||++++|
T Consensus       341 ~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v  420 (458)
T PRK14354        341 VKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYI  420 (458)
T ss_pred             cEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEE
Confidence              0                  00112345566666666666552        3788888888888888888888888888


Q ss_pred             ccCcEecCCceeCCCcEEeccCceE
Q 024153          164 AAGALVRQNTKIPCGEVWGGNPARF  188 (271)
Q Consensus       164 g~~svV~~~~~I~~~~vv~G~pa~~  188 (271)
                      |++|+|.++  ||+++++.|.|..+
T Consensus       421 ~~~~~v~~~--~~~~~~~~~~~~~~  443 (458)
T PRK14354        421 AAGSTITKD--VPEDALAIARARQV  443 (458)
T ss_pred             CCCCEECCC--CCCCCEEEecccee
Confidence            888888887  88888888887655

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.67  E-value=9e-16  Score=142.78  Aligned_cols=74  Identities=19%  Similarity=0.413  Sum_probs=62.5

Q ss_pred             ccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEec-cCce
Q 024153          117 VLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGG-NPAR  187 (271)
Q Consensus       117 ~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G-~pa~  187 (271)
                      .++++||++|.||+++++.        +++||++|+||.++.|.++++||++++||++++|.++  +++++++.| .|++
T Consensus       340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~--v~~~~~~~~~~~~~  417 (430)
T PRK14359        340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKD--VPKGSLAISRAPQK  417 (430)
T ss_pred             ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccc--cCCCcEEEeccCce
Confidence            5678899999999988774        3799999999999999999999999999999999998  999998876 5555


Q ss_pred             EccCC
Q 024153          188 FLRKL  192 (271)
Q Consensus       188 ~~~~~  192 (271)
                      ..+.+
T Consensus       418 ~~~~~  422 (430)
T PRK14359        418 NIKNF  422 (430)
T ss_pred             ehhhH
Confidence            54433

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.67  E-value=2.1e-15  Score=122.45  Aligned_cols=114  Identities=16%  Similarity=0.282  Sum_probs=100.7

Q ss_pred             hcCCCceECCCCEECCCcEEe---cCeEECCCCEEccCcEEecCC-------CceEECCCCEECCCCEEecCCcCCCCCc
Q 024153           48 IFDKAPVVNKDVFLAPSASII---GDVQVGRGSSIWYGCVLRGDV-------NSISIGSGTNIQDNSLVHVAKSNLAGKV  117 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~---~~v~IG~~~~I~~~~~I~~~~-------~~~~IG~~~~I~~~~~I~~~~~~~~~~~  117 (271)
                      .+...+.|++++.|+|++.|.   +++.||++|.|+++++|..+.       .++.||++|.|..++.+.          
T Consensus        13 ~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~----------   82 (164)
T cd04646          13 EIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE----------   82 (164)
T ss_pred             EEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE----------
Confidence            345677899999999999996   569999999999999998652       357899999999999987          


Q ss_pred             cceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153          118 LPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN  172 (271)
Q Consensus       118 ~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~  172 (271)
                       .+.||++|+|+.++.| .+++||++|+||+++.|.+++.|+++++++++..+.+.
T Consensus        83 -~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~  137 (164)
T cd04646          83 -ALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRT  137 (164)
T ss_pred             -eeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEe
Confidence             4999999999999999 55999999999999999999999999999999888774

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.67  E-value=1.6e-15  Score=123.07  Aligned_cols=106  Identities=23%  Similarity=0.394  Sum_probs=87.5

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEE
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTV  128 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i  128 (271)
                      +...+.|++++.|++++.|.+++.||++|.|++++.|..    ..||+++.|+.++.+.           ++.|++++.|
T Consensus        32 i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~----siig~~~~I~~~~~i~-----------~siIg~~~~I   96 (163)
T cd05636          32 IEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKN----SIIMDGTKVPHLNYVG-----------DSVLGENVNL   96 (163)
T ss_pred             EeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEee----eEecCCCEeccCCEEe-----------cCEECCCCEE
Confidence            344566777777777777777788888888888888763    5788888888888876           5789999999


Q ss_pred             CcCcEEe-------------------------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEe
Q 024153          129 GHSAVLH-------------------------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV  169 (271)
Q Consensus       129 ~~~~~i~-------------------------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV  169 (271)
                      ++++.+.                         ++.||++|+||.++.|.++++||++++|+++++|
T Consensus        97 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV  162 (163)
T cd05636          97 GAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV  162 (163)
T ss_pred             CCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence            9999873                         4899999999999999999999999999999987

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.66  E-value=1.4e-15  Score=143.56  Aligned_cols=53  Identities=21%  Similarity=0.350  Sum_probs=37.2

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCE
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSL  105 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~  105 (271)
                      +.+.+.||+++.|++++.|.+++.||++|.|+++|.|..    ..||++|.|++++.
T Consensus       267 i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~----svI~~~~~I~~~~~  319 (481)
T PRK14358        267 IEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTD----SVLHEGAVIKPHSV  319 (481)
T ss_pred             ccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEee----eEECCCCEEeecce
Confidence            356677888899999999888888888888888877742    24444444444333

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.66  E-value=6.4e-16  Score=125.39  Aligned_cols=53  Identities=26%  Similarity=0.537  Sum_probs=50.9

Q ss_pred             eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC
Q 024153          137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK  191 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~  191 (271)
                      -+||+++.||+++.|.++.+||+++.|||+|+|.++  ||+++++.|.||+++..
T Consensus       120 PtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkd--VP~~~tvvGvPArii~~  172 (194)
T COG1045         120 PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKD--VPPNATVVGVPARVIGR  172 (194)
T ss_pred             CccCCCeEECCCCEEEcceEECCCCEECCCceEccC--CCCCceEecCcceEecc
Confidence            689999999999999999999999999999999999  99999999999999963

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.66  E-value=5.2e-16  Score=144.38  Aligned_cols=95  Identities=17%  Similarity=0.328  Sum_probs=76.2

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCc----------EECcCcEEeceeeCCCcEEccCcEEcc-------C
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV----------TVGHSAVLHGCTVEDEAFVGMGATLLD-------G  154 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~----------~i~~~~~i~~~~Ig~~~~Ig~~~~I~~-------~  154 (271)
                      +.||++|.|++++.|.           ++.||++|          .|++++.+++|+||++|.||+++++..       +
T Consensus       299 ~~ig~~~~i~~~~~i~-----------~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~  367 (430)
T PRK14359        299 SDVGPLAHIRPKSEIK-----------NTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHK  367 (430)
T ss_pred             CEECCCCEECCCcEEe-----------ccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcC
Confidence            4667777777666664           34555555          666777788899999999999998864       3


Q ss_pred             cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          155 VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       155 v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      ++||++|+||+++.|.++++|++++++++. +.+.+++++....
T Consensus       368 ~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g-~~v~~~v~~~~~~  410 (430)
T PRK14359        368 TIIGKNVFIGSDTQLVAPVNIEDNVLIAAG-STVTKDVPKGSLA  410 (430)
T ss_pred             CEECCCeEEcCCCEEeCCcEECCCCEECCC-CEEccccCCCcEE
Confidence            899999999999999999999999998654 8899999887653

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.66  E-value=1.4e-15  Score=123.29  Aligned_cols=51  Identities=31%  Similarity=0.505  Sum_probs=48.5

Q ss_pred             eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCce
Q 024153          135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPAR  187 (271)
Q Consensus       135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~  187 (271)
                      +.++||++|+|++++.|.++++||++++|+++|+|.++  ||+++++.|+||+
T Consensus       112 ~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~G~Par  162 (162)
T TIGR01172       112 RHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD--VPPGATVVGVPAR  162 (162)
T ss_pred             cCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC--CCCCCEEEeecCC
Confidence            45789999999999999999999999999999999998  9999999999986

Cysteine biosynthesis

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.66  E-value=1.8e-15  Score=114.11  Aligned_cols=108  Identities=24%  Similarity=0.450  Sum_probs=85.9

Q ss_pred             eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcE
Q 024153           71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGAT  150 (271)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~  150 (271)
                      ++||+++.|++++.|.+. ..+.||++|.|+++|.|....+        ..++....+.......++.||++|+|+.++.
T Consensus         2 v~Ig~~~~I~~~~~i~~~-~~v~IG~~~~Ig~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~   72 (109)
T cd04647           2 ISIGDNVYIGPGCVISAG-GGITIGDNVLIGPNVTIYDHNH--------DIDDPERPIEQGVTSAPIVIGDDVWIGANVV   72 (109)
T ss_pred             eEECCCcEECCCCEEecC-CceEECCCCEECCCCEEECCCC--------CCCccccccccccccCCeEECCCCEECCCCE
Confidence            567777888888877753 3488888888888888876422        2333333334455567799999999999999


Q ss_pred             EccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          151 LLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       151 I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                      +.+++.|+++++|++++.|.++  +++++++.|.||+++
T Consensus        73 i~~~~~ig~~~~i~~~~~v~~~--i~~~~i~~g~pa~~~  109 (109)
T cd04647          73 ILPGVTIGDGAVVGAGSVVTKD--VPPNSIVAGNPAKVI  109 (109)
T ss_pred             EcCCCEECCCCEECCCCEEeeE--CCCCCEEEccccEeC
Confidence            9999999999999999999975  999999999999874

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.65  E-value=4e-15  Score=121.17  Aligned_cols=143  Identities=27%  Similarity=0.402  Sum_probs=114.0

Q ss_pred             cCCCceECCCCEECCCcEEec----CeEECCCCEEccCcEEecC-CCceEECCCCEECCCCEEecCCcCCCCCccceEEc
Q 024153           49 FDKAPVVNKDVFLAPSASIIG----DVQVGRGSSIWYGCVLRGD-VNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG  123 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~-~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig  123 (271)
                      +...+.++++++|++++.|..    .+.||++|.|++++.|.+. ...+.||++|.|++++.|..          ++.||
T Consensus        17 i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g----------~~~Ig   86 (167)
T cd00710          17 VIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHG----------PAYIG   86 (167)
T ss_pred             EEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeC----------CEEEC
Confidence            445677889999999999876    4899999999999999643 23589999999999999984          79999


Q ss_pred             CCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHH
Q 024153          124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQS  203 (271)
Q Consensus       124 ~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~  203 (271)
                      ++|.|+.++.+.+++||++|+||+++.|. ++.|++++.+++++++.++  .+         .+.+.++.....+..+..
T Consensus        87 ~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~--~~---------~~~~~~~~~~~~~~~~~i  154 (167)
T cd00710          87 DNCFIGFRSVVFNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQ--TQ---------ADALPDVTDSAREFNEKV  154 (167)
T ss_pred             CCCEECCCCEEECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCC--Cc---------ccccccCChhHHHHHHHH
Confidence            99999999999999999999999999994 6899999999988888775  33         333344555554554555


Q ss_pred             HHHHHHHHHH
Q 024153          204 AINYSNLARV  213 (271)
Q Consensus       204 ~~~~~~~~~~  213 (271)
                      ...|.++...
T Consensus       155 ~~~~~~~~~~  164 (167)
T cd00710         155 ITVNNELAEG  164 (167)
T ss_pred             hhhhhhhhhh
Confidence            5556666543

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.65  E-value=1.7e-15  Score=118.45  Aligned_cols=100  Identities=15%  Similarity=0.272  Sum_probs=78.0

Q ss_pred             CEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEEC----CCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           59 VFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQ----DNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~----~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      ++|.|.+.+...+.||+++.|.+++++..+   +.||++|.|.    .+++|.          |++.||++|.|.  +.+
T Consensus         2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~~---a~IG~~~iIn~~ig~~a~Ig----------hd~~IG~~~~I~--~~l   66 (147)
T cd04649           2 VRIADADRVRLGAYLAEGTTVMHEGFVNFN---AGTLGNCMVEGRISSGVIVG----------KGSDVGGGASIM--GTL   66 (147)
T ss_pred             eEecCCCEECCCCEECCCcEECCCCEEccC---CEECCCeEECCcccCCEEEC----------CCCEECCCCEEE--EEC
Confidence            466677777777778888888888888765   7888888887    665554          466666666665  333


Q ss_pred             e-c----eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee
Q 024153          135 H-G----CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI  175 (271)
Q Consensus       135 ~-~----~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I  175 (271)
                      . +    +.||++||||.++.|  ++.||++++||++++|.+++.|
T Consensus        67 ~G~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i  110 (147)
T cd04649          67 SGGGNNVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKV  110 (147)
T ss_pred             CCCcccCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence            2 2    899999999999999  6999999999999999998765

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.63  E-value=2.6e-15  Score=140.57  Aligned_cols=139  Identities=15%  Similarity=0.302  Sum_probs=103.4

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC----C--------CceEECCCCEECCCCEEecCCcCCCCC
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD----V--------NSISIGSGTNIQDNSLVHVAKSNLAGK  116 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~----~--------~~~~IG~~~~I~~~~~I~~~~~~~~~~  116 (271)
                      ++..+.|++++.|++++.|.+++.||++|.|++++.|.+.    .        ..+.||++|.|+++|.|..        
T Consensus       259 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~--------  330 (450)
T PRK14360        259 ISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRP--------  330 (450)
T ss_pred             EeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECC--------
Confidence            4456678888888888899888999999999888887521    0        1234566666666666643        


Q ss_pred             ccceEEcCCcEECcCcEE-----------------eceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCC
Q 024153          117 VLPTIIGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQN  172 (271)
Q Consensus       117 ~~~~~Ig~~~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~  172 (271)
                        ++.||++|.|+.++.+                 .++.||++|.||+++.+..       +++||++|+||++++|.++
T Consensus       331 --~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~  408 (450)
T PRK14360        331 --EAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP  408 (450)
T ss_pred             --CCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC
Confidence              3455555555544443                 3467888899999988753       7999999999999999999


Q ss_pred             ceeCCCcEEeccCceEccCCCHHHHH
Q 024153          173 TKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       173 ~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      ++|+++++++ ..+.+.+++++..+.
T Consensus       409 ~~ig~~~~v~-~~~~v~~~~~~~~~~  433 (450)
T PRK14360        409 ITLGEDVTVA-AGSTITKDVPDNSLA  433 (450)
T ss_pred             cEECCCCEEC-CCCEECccCCCCCEE
Confidence            9999999985 459999999887653

>PLN02357 serine acetyltransferase

Probab=99.63  E-value=2.7e-15  Score=133.57  Aligned_cols=56  Identities=25%  Similarity=0.462  Sum_probs=52.6

Q ss_pred             eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153          135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~  192 (271)
                      ..++||++|+||+++.|.++++||++++||++|+|.++  ||++++++|+||++++..
T Consensus       277 ~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~d--VP~~~~v~G~PArvv~~~  332 (360)
T PLN02357        277 RHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGK  332 (360)
T ss_pred             cCceeCCCeEECCceEEECCeEECCCCEECCCCEECcc--cCCCcEEECCCeEEEccC
Confidence            35899999999999999999999999999999999998  999999999999999754

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=99.63  E-value=7.1e-16  Score=126.67  Aligned_cols=120  Identities=24%  Similarity=0.403  Sum_probs=80.4

Q ss_pred             ceECCCCEECCCc--EEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153           53 PVVNKDVFLAPSA--SIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH  130 (271)
Q Consensus        53 ~~i~~~~~I~~~~--~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~  130 (271)
                      ..++-+++|.|..  .|.+.++||++-.+...+-       ++||+-..|+++|+|.          |++++|..-   .
T Consensus       135 lal~~q~ris~~~gvdihpaa~ig~gilldhatg-------vvigeTAvvg~~vSil----------H~Vtlggtg---k  194 (269)
T KOG4750|consen  135 LALGLQVRISPNFGVDIHPAAKIGKGILLDHATG-------VVIGETAVVGDNVSIL----------HPVTLGGTG---K  194 (269)
T ss_pred             EEEeecceecccccccccchhhcccceeeccccc-------eeecceeEeccceeee----------cceeecccc---c
Confidence            3445555555553  3455566666655543322       4455555555554443          233333211   0


Q ss_pred             CcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCH
Q 024153          131 SAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE  194 (271)
Q Consensus       131 ~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~  194 (271)
                      ++--..-.|||+||||++++|.++++||+|++||+||+|.+|  ||++++..|+|||.++..++
T Consensus       195 ~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kD--VP~~~~AvGnPAklIg~~~e  256 (269)
T KOG4750|consen  195 GSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKD--VPPNTLAVGNPAKLIGKIDE  256 (269)
T ss_pred             cccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEec--cCCCceecCCchhhcccccc
Confidence            110011489999999999999999999999999999999999  99999999999999986654

>PRK10191 putative acyl transferase; Provisional

Probab=99.63  E-value=4.2e-15  Score=117.82  Aligned_cols=52  Identities=19%  Similarity=0.314  Sum_probs=49.1

Q ss_pred             ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                      .+.|||+|+||+++.+.++++||++++|+++++|.++  +++++++.|.||++.
T Consensus        92 ~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d--v~~~~~v~G~pA~~~  143 (146)
T PRK10191         92 CPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS--VPDNALVVGEKARVK  143 (146)
T ss_pred             CCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc--cCCCcEEEccCcEEE
Confidence            3689999999999999999999999999999999998  999999999999864

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.63  E-value=4.2e-15  Score=119.36  Aligned_cols=107  Identities=21%  Similarity=0.365  Sum_probs=97.6

Q ss_pred             eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-----eeeCCCcEE
Q 024153           71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-----CTVEDEAFV  145 (271)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-----~~Ig~~~~I  145 (271)
                      -.|.+.++|.+.++|.|+   +.||+++.|..+++|.+...       +..||+++.|.+|++||.     ++||++|.|
T Consensus        12 P~i~~~a~Va~~A~viGd---V~Ig~~vsIw~~aVlRgD~~-------~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtI   81 (176)
T COG0663          12 PKIDPTAFVAPSATVIGD---VRIGAGVSIWPGAVLRGDVE-------PIRIGARTNIQDGVVIHADPGYPVTIGDDVTI   81 (176)
T ss_pred             CCCCCceEECCCCEEEEe---EEECCCCEECCceEEEccCC-------ceEECCCceecCCeEEecCCCCCeEECCCcEE
Confidence            347788999999999988   99999999999999998654       899999999999999976     999999999


Q ss_pred             ccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          146 GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       146 g~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                      |.++.|.+ |+||++|.||.+|+|..++.|+++++++ ..|.+.
T Consensus        82 GH~aivHG-c~Ig~~~lIGmgA~vldga~IG~~~iVg-AgalV~  123 (176)
T COG0663          82 GHGAVVHG-CTIGDNVLIGMGATVLDGAVIGDGSIVG-AGALVT  123 (176)
T ss_pred             cCccEEEE-eEECCCcEEecCceEeCCcEECCCcEEc-cCCccc
Confidence            99999988 9999999999999999999999999984 446655

>PLN02296 carbonate dehydratase

Probab=99.62  E-value=2.1e-14  Score=124.82  Aligned_cols=116  Identities=18%  Similarity=0.283  Sum_probs=96.0

Q ss_pred             CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-----------cee
Q 024153           70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-----------GCT  138 (271)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-----------~~~  138 (271)
                      .-.|++++.|.+++++.++   +.||++|.|+++|+|.+..       .++.||++|.|+++++|+           +++
T Consensus        52 ~p~I~~~~~I~p~A~V~G~---V~IG~~~~I~~gavI~g~~-------~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~si  121 (269)
T PLN02296         52 APVVDKDAFVAPSASVIGD---VQVGRGSSIWYGCVLRGDV-------NSISVGSGTNIQDNSLVHVAKTNLSGKVLPTI  121 (269)
T ss_pred             CCccCCCCEECCCcEEEcc---eEECCCCEECCCCEEEcCC-------CceEECCCCEECCCCEEEeCCCcccCCCCCcE
Confidence            3458888899999998876   8999999999999998643       268999999999999995           589


Q ss_pred             eCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC--CCHHHH
Q 024153          139 VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK--LTEEEM  197 (271)
Q Consensus       139 Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~--~~~~~~  197 (271)
                      ||++|+|+.+|+| .+++||++|+||.+++|.+++.|+++++++. .+.+.++  +++..+
T Consensus       122 IG~~v~IG~~avI-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~Iga-gSvV~~~~~I~~~~~  180 (269)
T PLN02296        122 IGDNVTIGHSAVL-HGCTVEDEAFVGMGATLLDGVVVEKHAMVAA-GALVRQNTRIPSGEV  180 (269)
T ss_pred             eCCCCEECCCcee-cCCEECCCcEECCCcEECCCeEECCCCEECC-CCEEecCCEeCCCeE
Confidence            9999999999987 4589999999999999999989999988853 3666554  444443

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.61  E-value=5e-15  Score=123.30  Aligned_cols=115  Identities=17%  Similarity=0.276  Sum_probs=95.9

Q ss_pred             eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-----eeeCCCcEE
Q 024153           71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-----CTVEDEAFV  145 (271)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-----~~Ig~~~~I  145 (271)
                      -.|++++.|++++.|.++   +.||++|.|+++|+|.+..       +.+.|++++.|+++|.|+.     ++|+++++|
T Consensus        11 p~i~~~a~I~~~a~I~g~---V~IG~~~~I~~~avIrgd~-------~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~I   80 (196)
T PRK13627         11 PVVHPTAFVHPSAVLIGD---VIVGAGVYIGPLASLRGDY-------GRLIVQAGANLQDGCIMHGYCDTDTIVGENGHI   80 (196)
T ss_pred             CccCCCeEECCCCEEECc---eEECCCCEECCCCEEecCC-------ccEEECCCCEECCCCEEeCCCCCCCEECCCCEE
Confidence            346788888999998877   8999999999999998643       2588999999999999965     789999999


Q ss_pred             ccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC--CHHHH
Q 024153          146 GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL--TEEEM  197 (271)
Q Consensus       146 g~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~--~~~~~  197 (271)
                      |.++.+ .+++||++|+||++++|.+++.|++++++. ..+.+.++.  ++..+
T Consensus        81 g~~a~i-~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vg-ags~V~~~~~ip~~~~  132 (196)
T PRK13627         81 GHGAIL-HGCVIGRDALVGMNSVIMDGAVIGEESIVA-AMSFVKAGFQGEKRQL  132 (196)
T ss_pred             CCCcEE-eeEEECCCCEECcCCccCCCcEECCCCEEc-CCCEEeCCcCcCCCcE
Confidence            999977 458899999999999999999999999885 447777765  44443

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.61  E-value=1.4e-14  Score=120.63  Aligned_cols=146  Identities=14%  Similarity=0.235  Sum_probs=97.3

Q ss_pred             CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCCC-------CCccceE
Q 024153           51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNLA-------GKVLPTI  121 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~  121 (271)
                      ....+++.++|++++.|.+.+.|+.++.|+++|.|....  ....||++|.|++++.|....-...       -...++.
T Consensus         8 ~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~   87 (193)
T cd03353           8 ETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTV   87 (193)
T ss_pred             CeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccE
Confidence            456788888899999998888898889999999987542  2346777777777666642110000       0011233


Q ss_pred             EcCCcEECcCcEE-----------------eceeeCCCcEEccCcEEc-------cCcEECCCcEEccCcEecCCceeCC
Q 024153          122 IGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLL-------DGVYVEKHAMVAAGALVRQNTKIPC  177 (271)
Q Consensus       122 Ig~~~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~-------~~v~Ig~~~~Ig~~svV~~~~~I~~  177 (271)
                      |++++.|++++.+                 .++.||++|.||+++.+.       .+++||++++|++++.+.++++|++
T Consensus        88 Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~  167 (193)
T cd03353          88 LGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGD  167 (193)
T ss_pred             ECCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECC
Confidence            3333333333222                 224555666666665553       2578999999999999999999999


Q ss_pred             CcEEeccCceEccCCCHHHH
Q 024153          178 GEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       178 ~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ++++... +.+.++++++.+
T Consensus       168 ~~~i~~g-s~V~~~v~~~~~  186 (193)
T cd03353         168 GATIAAG-STITKDVPPGAL  186 (193)
T ss_pred             CcEECCC-CEEccccCCCCE
Confidence            9998654 888899887654

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.61  E-value=1.3e-14  Score=136.10  Aligned_cols=133  Identities=19%  Similarity=0.346  Sum_probs=82.7

Q ss_pred             CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC-------------CCceEECCCCEECCCCEEecCCcC-----
Q 024153           51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD-------------VNSISIGSGTNIQDNSLVHVAKSN-----  112 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~-------------~~~~~IG~~~~I~~~~~I~~~~~~-----  112 (271)
                      +.+.|++++.|.+++.|.+++.||++|.|++++.|.+.             ..++.||++|.|++++.|..+...     
T Consensus       268 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~  347 (456)
T PRK14356        268 PRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGAR  347 (456)
T ss_pred             CCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCE
Confidence            33444445555544555556667777777666665431             012344555555554444321110     


Q ss_pred             -------------------CCCCccceEEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEECCCcEEcc
Q 024153          113 -------------------LAGKVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAA  165 (271)
Q Consensus       113 -------------------~~~~~~~~~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~  165 (271)
                                         +.....++.||+++.|++++.+        +++.|||++++|.++.|.++++||++++|++
T Consensus       348 ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~  427 (456)
T PRK14356        348 VGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGA  427 (456)
T ss_pred             ecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcC
Confidence                               0011234566777777777654        2478888888888888888888888888888


Q ss_pred             CcEecCCceeCCCcEEeccC
Q 024153          166 GALVRQNTKIPCGEVWGGNP  185 (271)
Q Consensus       166 ~svV~~~~~I~~~~vv~G~p  185 (271)
                      +|+|.++  |++++++.|..
T Consensus       428 ~~~v~~~--~~~~~~~~~~~  445 (456)
T PRK14356        428 GSVITKD--VPDGSLAIARG  445 (456)
T ss_pred             CCEEecc--CCCCcEEEEec
Confidence            8888887  88888888763

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.60  E-value=3.1e-15  Score=115.39  Aligned_cols=161  Identities=19%  Similarity=0.217  Sum_probs=132.9

Q ss_pred             CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC---CCCCccceEEcCCcE
Q 024153           51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN---LAGKVLPTIIGDNVT  127 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~---~~~~~~~~~Ig~~~~  127 (271)
                      ..+.|.+++.+...+.|.|++.|+++|.++|.+++.++.+.++||++|.|.+.++|...-.+   .+.......||.+..
T Consensus         7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv   86 (190)
T KOG4042|consen    7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV   86 (190)
T ss_pred             ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence            45678888888888899999999999999999999999999999999999999998653222   122345899999999


Q ss_pred             ECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCc--eEccC---CCHHHHHHHHH
Q 024153          128 VGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPA--RFLRK---LTEEEMAFISQ  202 (271)
Q Consensus       128 i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa--~~~~~---~~~~~~~~~~~  202 (271)
                      +.-+|....-.+||+..|+..+.+.+||.+-++|+||++..|..+-.+|+++++.|...  |..++   -.+.++..+++
T Consensus        87 FeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R~~~~~~~~qtlQidFLrK  166 (190)
T KOG4042|consen   87 FEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSRTTKTPNMTQTLQIDFLRK  166 (190)
T ss_pred             EEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccceecCCCCCccchHHHHHH
Confidence            99999988999999999999999999999999999999999998888999999998633  22222   23455667777


Q ss_pred             HHHHHHHHH
Q 024153          203 SAINYSNLA  211 (271)
Q Consensus       203 ~~~~~~~~~  211 (271)
                      ....|.-|.
T Consensus       167 iLPnYHHL~  175 (190)
T KOG4042|consen  167 ILPNYHHLY  175 (190)
T ss_pred             Hccchhhhh
Confidence            666666554

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.59  E-value=1.6e-14  Score=135.38  Aligned_cols=146  Identities=15%  Similarity=0.238  Sum_probs=97.2

Q ss_pred             CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCCC-------CCccceE
Q 024153           51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNLA-------GKVLPTI  121 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~  121 (271)
                      ..+.+++++.|++++.|.+++.|+.++.|+++|.|....  .+++||++|.|++++.|....-...       -...++.
T Consensus       262 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~  341 (456)
T PRK14356        262 ESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAV  341 (456)
T ss_pred             CcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCE
Confidence            346678888888888888888888889999999998552  3566777777777666653211100       0011223


Q ss_pred             EcCCcEECcCcEEe-----------------ceeeCCCcEEccCcEEc-------cCcEECCCcEEccCcEecCCceeCC
Q 024153          122 IGDNVTVGHSAVLH-----------------GCTVEDEAFVGMGATLL-------DGVYVEKHAMVAAGALVRQNTKIPC  177 (271)
Q Consensus       122 Ig~~~~i~~~~~i~-----------------~~~Ig~~~~Ig~~~~I~-------~~v~Ig~~~~Ig~~svV~~~~~I~~  177 (271)
                      ||+++.|++++.+.                 +++||+++.|++++.+.       .++.||+++++|+++.|.++++|++
T Consensus       342 ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~  421 (456)
T PRK14356        342 LEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGD  421 (456)
T ss_pred             ECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECC
Confidence            33333333332221                 24555555555555431       2489999999999999999999999


Q ss_pred             CcEEeccCceEccCCCHHHH
Q 024153          178 GEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       178 ~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ++++++. +.+.+++++..+
T Consensus       422 ~~~i~~~-~~v~~~~~~~~~  440 (456)
T PRK14356        422 GALVGAG-SVITKDVPDGSL  440 (456)
T ss_pred             CCEEcCC-CEEeccCCCCcE
Confidence            9998654 888899987765

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.58  E-value=1.5e-14  Score=122.64  Aligned_cols=107  Identities=24%  Similarity=0.418  Sum_probs=92.1

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe
Q 024153           56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH  135 (271)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~  135 (271)
                      -++++|.|++.+..++.||+|++|++.+.|.-.   ..+++.|-|.-++++.+          ..+||++|+|+.++.|.
T Consensus       106 ~~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNig---A~~~~gtMVd~~as~G~----------~a~VGkn~higgGa~I~  172 (271)
T COG2171         106 PEGVRIVPGAIVRLGAYIAKGTVVMPESFVNIG---AGTGEGTMVDGRASVGS----------CAQVGKNSHIGGGASIG  172 (271)
T ss_pred             cCceeecCccEEeeccEECCCcEEcccceEEEC---cccCcceEEeeeeeeec----------cEEECCCcccCCcceEe
Confidence            345899999999999999999999998887633   56777777777777763          68899999999999985


Q ss_pred             c---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee
Q 024153          136 G---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI  175 (271)
Q Consensus       136 ~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I  175 (271)
                      |         ++|||+|+||+|+.+..|+.+|++|+|++|..|++++.+
T Consensus       173 GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki  221 (271)
T COG2171         173 GVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI  221 (271)
T ss_pred             EEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence            4         899999999999999999999999999999999999443

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.58  E-value=4.7e-15  Score=126.61  Aligned_cols=113  Identities=21%  Similarity=0.345  Sum_probs=100.2

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEE
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATL  151 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I  151 (271)
                      ++.++.|++++.|.+.   +.||++|.|++++.|..          ++.||++|.|++++.+. +++||++|+|+.++.|
T Consensus        83 vg~~~~I~~~a~I~g~---v~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I  149 (231)
T TIGR03532        83 KNINARIEPGAIIRDQ---VIIGDNAVIMMGAVINI----------GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVL  149 (231)
T ss_pred             cccccEECCCCEEeCC---eEECCCCEEecCcccCC----------CeEECCCCEEccccccCCCcEECCCcEEcCCcEE
Confidence            6788888888888865   89999999999999974          78999999999999995 6999999999999999


Q ss_pred             cc--------CcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHH
Q 024153          152 LD--------GVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAF  199 (271)
Q Consensus       152 ~~--------~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~  199 (271)
                      .+        ++.||++|+||++++|.+++.|++++++. ..+.+.+++++..+..
T Consensus       150 ~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Ig-agsvV~~di~~~~vv~  204 (231)
T TIGR03532       150 AGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVA-AGAIVTEDVPPNTVVA  204 (231)
T ss_pred             ccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEEC-CCCEEccccCCCcEEE
Confidence            85        69999999999999999999999999985 5588888888777643

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.57  E-value=3.7e-14  Score=133.85  Aligned_cols=64  Identities=27%  Similarity=0.413  Sum_probs=48.6

Q ss_pred             cceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEec
Q 024153          118 LPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGG  183 (271)
Q Consensus       118 ~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G  183 (271)
                      ++++||++|.|++++++.        ++.||++|+||++++|.++++||++++|+++|+|.++  +++++++.+
T Consensus       373 ~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~--v~~~~~~~~  444 (481)
T PRK14358        373 GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDD--VPEGAMAVA  444 (481)
T ss_pred             CCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEecc--cCCCCEEEe
Confidence            457777777777777663        3678888888888888888888888888888888877  777777763

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.1e-14  Score=135.37  Aligned_cols=133  Identities=22%  Similarity=0.315  Sum_probs=104.8

Q ss_pred             HHHHhhcccccCchhhhhhhhhhhhhhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCE
Q 024153           20 QALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTN   99 (271)
Q Consensus        20 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~   99 (271)
                      +.+.+|.+.+..+..+...     +.+.+...+.+-++.+.+.+.+.++.++.||.++.|+.++.|..    .+||.+|.
T Consensus       288 DiI~RW~YP~Vpd~~~~~~-----q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~N----SVIG~~c~  358 (673)
T KOG1461|consen  288 DIIQRWTYPLVPDINFSGN-----QTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISN----SVIGANCR  358 (673)
T ss_pred             HHHHhhcccccccccCCCC-----ceeeecccccccCccceehhhccccceEEecccccccCCCeeec----ceecCCCE
Confidence            4566666666555443321     12223333444567788888889999999999999999999984    59999999


Q ss_pred             ECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153          100 IQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN  172 (271)
Q Consensus       100 I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~  172 (271)
                      ||.||.|.           ++.|+++|+||.||.|+.+.|+|++.|++++.+.+||+||.+++++.+-++.++
T Consensus       359 IgsN~~I~-----------~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n  420 (673)
T KOG1461|consen  359 IGSNVRIK-----------NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN  420 (673)
T ss_pred             ecCceEEe-----------eeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence            99999998           699999999999999999999999999999988888887777777766666555

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.57  E-value=3.2e-14  Score=133.63  Aligned_cols=61  Identities=10%  Similarity=0.204  Sum_probs=47.1

Q ss_pred             eeeCCCcEEccCcEEc-------cCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          137 CTVEDEAFVGMGATLL-------DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~-------~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      +.||++|.||+++++.       .++.||++|+||+++.|.++++|++++++++. +.+.+++++..+.
T Consensus       373 ~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~-s~v~~~v~~~~~~  440 (459)
T PRK14355        373 ATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAG-TTVTKDVPPDSLA  440 (459)
T ss_pred             CEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCC-CEEcccCCCCcEE
Confidence            3556666666666542       34789999999999999999999999998654 8888888877653

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.56  E-value=3.4e-14  Score=123.43  Aligned_cols=105  Identities=23%  Similarity=0.336  Sum_probs=87.2

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceE-ECCCCE---ECCCCEEecCCcCCCCCccceEEcCCcEEC
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSIS-IGSGTN---IQDNSLVHVAKSNLAGKVLPTIIGDNVTVG  129 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~-IG~~~~---I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~  129 (271)
                      .+..+++|++.+.|..++.||++|.|+++++|..+   .. +|+++.   |..+++|.          |++.||+++.| 
T Consensus       174 Vvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~n---AgtiG~~~IEgrInsGavIG----------hds~IG~gasI-  239 (341)
T TIGR03536       174 VVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFN---AGTEGPSMVEGRISAGVMVG----------KGSDLGGGCST-  239 (341)
T ss_pred             EccCCcEEcCCCeEcCCcEECCCCEEecCCEECcC---cEecCCceEecccccCCEEC----------CCCEECCCCEE-
Confidence            36678888888888888889999999998888744   44 788888   77888776          47888888888 


Q ss_pred             cCcEEe-c----eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee
Q 024153          130 HSAVLH-G----CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI  175 (271)
Q Consensus       130 ~~~~i~-~----~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I  175 (271)
                       ++++. +    +.||++|+||+++.|  ++.||++|+|++|++|..++.|
T Consensus       240 -g~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI  287 (341)
T TIGR03536       240 -MGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV  287 (341)
T ss_pred             -eEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence             44443 3    899999999999999  8999999999999999988765

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.56  E-value=1.2e-13  Score=111.81  Aligned_cols=104  Identities=25%  Similarity=0.410  Sum_probs=84.6

Q ss_pred             CCceECCCCEECCCcEEecC---eEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCCCCCcc
Q 024153           51 KAPVVNKDVFLAPSASIIGD---VQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNLAGKVL  118 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~~~~~~  118 (271)
                      ..+.|++++.|+|++.|.++   +.||++|.|+++++|.+..         ..+.||+++.|++++.+.           
T Consensus        20 ~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~-----------   88 (161)
T cd03359          20 QNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVN-----------   88 (161)
T ss_pred             CCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEE-----------
Confidence            36789999999999999876   7999999999999998642         357899999999999997           


Q ss_pred             ceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEcc
Q 024153          119 PTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAA  165 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~  165 (271)
                      .+.|++++.|++++.|. ++.|+++++|+.++.|.+++.|++++++++
T Consensus        89 ~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g  136 (161)
T cd03359          89 AAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSG  136 (161)
T ss_pred             eeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEec
Confidence            58899999999888773 377777777777777777666666666654

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.56  E-value=3e-14  Score=133.29  Aligned_cols=145  Identities=13%  Similarity=0.157  Sum_probs=99.1

Q ss_pred             ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCCC-------CCccceEEc
Q 024153           53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNLA-------GKVLPTIIG  123 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~Ig  123 (271)
                      ..+++.+.|++++.|.+++.|+.++.|++++.|....  .++.||++|.|++++.|....-...       -....+.||
T Consensus       256 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~  335 (451)
T TIGR01173       256 FDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG  335 (451)
T ss_pred             EEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEEC
Confidence            3466777777777777777777777788888776442  3456677777776666653221100       001134444


Q ss_pred             CCcEECcCcEE-----------------eceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCCCc
Q 024153          124 DNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPCGE  179 (271)
Q Consensus       124 ~~~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~~~  179 (271)
                      ++|.|++++.+                 .++.||++|+||+++.+..       +++||++++||+++.|.++++|++++
T Consensus       336 ~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~  415 (451)
T TIGR01173       336 AGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGA  415 (451)
T ss_pred             CCcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCC
Confidence            44444444332                 2367777777777777754       58999999999999999999999999


Q ss_pred             EEeccCceEccCCCHHHHH
Q 024153          180 VWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       180 vv~G~pa~~~~~~~~~~~~  198 (271)
                      ++++. +.+.+++++..+.
T Consensus       416 ~i~~g-~~v~~~v~~~~~~  433 (451)
T TIGR01173       416 TIAAG-STVTKDVPEGALA  433 (451)
T ss_pred             EEccC-CEECccCCCCcEE
Confidence            99654 8999999987764

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.55  E-value=6.3e-14  Score=104.55  Aligned_cols=79  Identities=24%  Similarity=0.376  Sum_probs=63.5

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ  171 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~  171 (271)
                      +.||+++.|+++|.|..          ++.|+.++.+   ..+.++.||++|+|+.++.+..+++||++++|+++++|.+
T Consensus        23 ~~ig~~~~Ig~~~~i~~----------~~~i~~~~~~---~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~   89 (101)
T cd03354          23 IVIGETAVIGDNCTIYQ----------GVTLGGKGKG---GGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTK   89 (101)
T ss_pred             EEECCCCEECCCCEEcC----------CCEECCCccC---CcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECc
Confidence            56677777777766642          3444444433   1356789999999999999999999999999999999999


Q ss_pred             CceeCCCcEEeccC
Q 024153          172 NTKIPCGEVWGGNP  185 (271)
Q Consensus       172 ~~~I~~~~vv~G~p  185 (271)
                      +  +|+++++.|+|
T Consensus        90 ~--~~~~~~~~G~P  101 (101)
T cd03354          90 D--VPANSTVVGVP  101 (101)
T ss_pred             c--cCCCCEEEeCC
Confidence            7  99999999997

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.55  E-value=5.5e-14  Score=121.57  Aligned_cols=103  Identities=17%  Similarity=0.373  Sum_probs=89.3

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCce-EECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSI-SIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV  133 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~-~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~  133 (271)
                      +..+++|.+.+.+.-++.||+++.|+++++|..+   + +||++ .|  +++|.          |++.||++|.|++++.
T Consensus       150 vp~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~n---AgtIG~~-iI--~g~I~----------HdvvIGd~~~IgpGvs  213 (319)
T TIGR03535       150 VPTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFN---AGTLGAS-MV--EGRIS----------AGVVVGDGSDIGGGAS  213 (319)
T ss_pred             CCCccEECCCceeeeccEECCCCEEcCCCEEccC---ceEecCc-eE--EEEEc----------cCCEECCCCEECCCce
Confidence            4568888888888889999999999999998865   6 68885 66  45664          6899999999999999


Q ss_pred             Eec---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee
Q 024153          134 LHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI  175 (271)
Q Consensus       134 i~~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I  175 (271)
                      |.+         +.||++|+||++|.|  ++.||++|+||+|++|.+++.|
T Consensus       214 I~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v  262 (319)
T TIGR03535       214 IMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV  262 (319)
T ss_pred             ecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence            644         899999999999999  8999999999999999998654

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.55  E-value=1.9e-14  Score=119.50  Aligned_cols=108  Identities=21%  Similarity=0.265  Sum_probs=91.2

Q ss_pred             eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-----ceeeCCCcEE
Q 024153           71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-----GCTVEDEAFV  145 (271)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-----~~~Ig~~~~I  145 (271)
                      -.|++++.|++++.|.++   +.||++|.|+++|+|.+..       +++.||+++.|+++|+|+     +++|++++.|
T Consensus         9 p~i~~~~~I~~~a~I~G~---V~IG~~~~I~~~a~I~gd~-------g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~I   78 (192)
T TIGR02287         9 PVVHPEAYVHPTAVLIGD---VILGKRCYVGPLASLRGDF-------GRIVLKEGANIQDNCVMHGFPGQDTVVEENGHV   78 (192)
T ss_pred             CcCCCCcEECCCCEEEee---EEECCCCEECCCcEEEccC-------CceEECCCCEECCCeEEeccCCCCCeECCCCEE
Confidence            357899999999999877   8999999999999998632       368999999999999994     4899999999


Q ss_pred             ccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153          146 GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR  190 (271)
Q Consensus       146 g~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~  190 (271)
                      +.++.|. +++|+++|.||.++.+..++.|++++++. ..+.+.+
T Consensus        79 g~~a~I~-~siIg~~~~IG~ga~I~~g~~IG~~s~Vg-ags~V~~  121 (192)
T TIGR02287        79 GHGAILH-GCIVGRNALVGMNAVVMDGAVIGENSIVA-ASAFVKA  121 (192)
T ss_pred             CCCCEEc-CCEECCCCEECCCcccCCCeEECCCCEEc-CCCEECC
Confidence            9999775 58999999999998888888888888875 3355544

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=4.6e-14  Score=126.53  Aligned_cols=135  Identities=19%  Similarity=0.321  Sum_probs=95.5

Q ss_pred             EECCC-cEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC------CCccceEEcCCcEECcCc
Q 024153           60 FLAPS-ASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA------GKVLPTIIGDNVTVGHSA  132 (271)
Q Consensus        60 ~I~~~-~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~------~~~~~~~Ig~~~~i~~~~  132 (271)
                      .+.|. .+|.+++.||.++.|.++++|.|.   +.||++|.||++|.|....-...      .....+.||++|.||+.+
T Consensus       257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~G~---t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA  333 (460)
T COG1207         257 LIDPATTYIRGDVEIGRDVVIEPNVILEGN---TVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFA  333 (460)
T ss_pred             EeCCCeEEEcCcEEECCceEEecCcEEeee---EEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCcc
Confidence            44454 457788999999999999999977   88888888888876653321100      112233344444333333


Q ss_pred             EE-----------------------------------eceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEec
Q 024153          133 VL-----------------------------------HGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVR  170 (271)
Q Consensus       133 ~i-----------------------------------~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~  170 (271)
                      .+                                   .++.||.+|.||++++...       .++||++++||++|.+-
T Consensus       334 ~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LV  413 (460)
T COG1207         334 RLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLV  413 (460)
T ss_pred             ccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEE
Confidence            33                                   2367777777777777643       28999999999999988


Q ss_pred             CCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          171 QNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       171 ~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      .-++|++++.++ ..+.+.+|+|+..+.
T Consensus       414 APV~IGd~a~ia-AGStIT~DVp~~aLa  440 (460)
T COG1207         414 APVTIGDGATIA-AGSTITKDVPEGALA  440 (460)
T ss_pred             eeEEecCCcEEc-ccceEcccCCCCcee
Confidence            889999999984 568999999988764

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.54  E-value=1.3e-13  Score=118.54  Aligned_cols=141  Identities=18%  Similarity=0.221  Sum_probs=92.0

Q ss_pred             CCCceECCCCEECCCcEEe-----cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153           50 DKAPVVNKDVFLAPSASII-----GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD  124 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~-----~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (271)
                      .+.+.+.++++|++++.|.     .++.||++|.|.++++|..+   +.||++|.|+.++.|.+...  +...++++||+
T Consensus       104 ~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~---v~IG~nv~I~~g~~IgG~~e--p~~~~~ViIgD  178 (269)
T TIGR00965       104 VPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSC---AQIGKNVHLSGGVGIGGVLE--PLQANPTIIED  178 (269)
T ss_pred             CCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCC---CEECCCCEEcCCcccCCCcc--cCCCCCeEECC
Confidence            3444555555555555554     34556677777766666654   67777777777776643211  12346899999


Q ss_pred             CcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCc-------EEccCcEecCCcee---CCCcEEeccCceEccCCC
Q 024153          125 NVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHA-------MVAAGALVRQNTKI---PCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       125 ~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~-------~Ig~~svV~~~~~I---~~~~vv~G~pa~~~~~~~  193 (271)
                      +|+||+++.|. +++||++|.||++++|.++++|.+..       .|.++|+|.++..-   +++++.   .|.+++.++
T Consensus       179 nv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g~~p~~~g~~~~~---~a~ivk~~d  255 (269)
T TIGR00965       179 NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSGNLPSKDGKYSLY---CAVIVKKVD  255 (269)
T ss_pred             CCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecCCeecCCCccccc---eeEEEEEec
Confidence            99999999885 69999999999999999999988865       34555555544111   111221   267777776


Q ss_pred             HHHHH
Q 024153          194 EEEMA  198 (271)
Q Consensus       194 ~~~~~  198 (271)
                      +....
T Consensus       256 ~~t~~  260 (269)
T TIGR00965       256 AKTRG  260 (269)
T ss_pred             hhhhh
Confidence            55543

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PLN02472 uncharacterized protein

Probab=99.54  E-value=3.3e-14  Score=122.07  Aligned_cols=100  Identities=13%  Similarity=0.235  Sum_probs=86.6

Q ss_pred             EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-----------ceeeC
Q 024153           72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-----------GCTVE  140 (271)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-----------~~~Ig  140 (271)
                      .|+.++.|.+++++.++   +.||++|.|+.+++|.+...       .++||+++.|+++|+|+           +++||
T Consensus        61 ~i~~~~~I~p~a~i~G~---V~Ig~~a~I~~gavirgd~~-------~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG  130 (246)
T PLN02472         61 KVAVDAYVAPNVVLAGQ---VTVWDGASVWNGAVLRGDLN-------KITVGFCSNVQERCVLHAAWNSPTGLPAETLID  130 (246)
T ss_pred             ccCCCCEECCCCEEecC---EEECCCCEEcCCCEEecCCc-------ceEECCCCEECCCCEEeecCccccCCCCCcEEC
Confidence            47889999999999987   99999999999999986433       68999999999999995           48999


Q ss_pred             CCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153          141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG  182 (271)
Q Consensus       141 ~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~  182 (271)
                      ++|.||.+|.|. +|+|+++|.||.+++|..++.|++++++.
T Consensus       131 ~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~gavIg~~~~Ig  171 (246)
T PLN02472        131 RYVTIGAYSLLR-SCTIEPECIIGQHSILMEGSLVETHSILE  171 (246)
T ss_pred             CCCEECCCcEEC-CeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence            999999999884 68888888888888888888888877764

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.53  E-value=2.5e-13  Score=109.09  Aligned_cols=113  Identities=25%  Similarity=0.342  Sum_probs=94.3

Q ss_pred             cCCCceECCCCEECCCcEEecC---eEECCCCEEccCcEEecC-CCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153           49 FDKAPVVNKDVFLAPSASIIGD---VQVGRGSSIWYGCVLRGD-VNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD  124 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~-~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (271)
                      +...+.||+++.|++++.|.+.   +.||++|.|+++|.|.++ ..++.||+++.|++++.+.           ++.||+
T Consensus        15 i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----------~~~Ig~   83 (154)
T cd04650          15 VIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVH-----------GAKVGN   83 (154)
T ss_pred             EEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEE-----------CcEECC
Confidence            4456778999999999988876   899999999999999853 2358899999999999986           689999


Q ss_pred             CcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcE-EccCcEecCC
Q 024153          125 NVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAM-VAAGALVRQN  172 (271)
Q Consensus       125 ~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~-Ig~~svV~~~  172 (271)
                      ++.|+.++.+. ++.||+++++++++.+.++..++++++ .|..+.+.++
T Consensus        84 ~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~  133 (154)
T cd04650          84 YVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRK  133 (154)
T ss_pred             CCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEecc
Confidence            99999999885 499999999999999999999999888 4555665544

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.53  E-value=2e-13  Score=109.84  Aligned_cols=112  Identities=23%  Similarity=0.294  Sum_probs=91.8

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-----eceeeCCCcEEcc
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-----HGCTVEDEAFVGM  147 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-----~~~~Ig~~~~Ig~  147 (271)
                      |..++.|+++++|.++   +.||++|.|+++|+|....       ..+.||++|.|+++|.|     ++++||++|+|+.
T Consensus         3 i~~~~~i~~~a~i~g~---v~IG~~~~I~~~~~i~~~~-------~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~   72 (155)
T cd04745           3 VDPSSFVHPTAVLIGD---VIIGKNCYIGPHASLRGDF-------GRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGH   72 (155)
T ss_pred             cCCCeEECCCCEEEcc---EEECCCCEECCCcEEeCCC-------CcEEECCCCEECCCCEEeecCCCCeEEcCCCEECC
Confidence            5678888888988876   8999999999999998532       26899999999999999     4599999999999


Q ss_pred             CcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc--CCCHHH
Q 024153          148 GATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR--KLTEEE  196 (271)
Q Consensus       148 ~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~--~~~~~~  196 (271)
                      ++.+. ++.||++++|+++++|..++.|++++++. ..+.+.+  ++++..
T Consensus        73 ~~~i~-~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig-~~s~v~~~~~i~~~~  121 (155)
T cd04745          73 GAILH-GCTIGRNALVGMNAVVMDGAVIGEESIVG-AMAFVKAGTVIPPRS  121 (155)
T ss_pred             CcEEE-CCEECCCCEECCCCEEeCCCEECCCCEEC-CCCEeCCCCEeCCCC
Confidence            99875 58999999999999998888888888874 3355544  344443

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.53  E-value=7.8e-14  Score=130.53  Aligned_cols=141  Identities=16%  Similarity=0.198  Sum_probs=90.1

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecC----------CcC--CCCCccceE
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA----------KSN--LAGKVLPTI  121 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~----------~~~--~~~~~~~~~  121 (271)
                      .|++++.|++++.|.+++.|+.++.|+++|+|...   +.|. +|.|+++|.|..+          ..-  +.-...++.
T Consensus       251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~---~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~  326 (448)
T PRK14357        251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPM---TRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTV  326 (448)
T ss_pred             EEccceEECCCcEEcCCcEEEeeeEECCCcEECCC---ceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCccc
Confidence            56666666666666666666666666666666543   3322 1344444444211          000  000112355


Q ss_pred             EcCCcEECcCcEE-----------------eceeeCCCcEEccCcEEc-------cCcEECCCcEEccCcEecCCceeCC
Q 024153          122 IGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLL-------DGVYVEKHAMVAAGALVRQNTKIPC  177 (271)
Q Consensus       122 Ig~~~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~-------~~v~Ig~~~~Ig~~svV~~~~~I~~  177 (271)
                      ||++|.|++++.+                 .+++||++|+||+++++.       .+++||++++||+++.|.++++|++
T Consensus       327 ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~  406 (448)
T PRK14357        327 LKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGK  406 (448)
T ss_pred             ccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECC
Confidence            5555555554433                 236778888888887764       3589999999999999999999999


Q ss_pred             CcEEeccCceEccCCCHHHHHH
Q 024153          178 GEVWGGNPARFLRKLTEEEMAF  199 (271)
Q Consensus       178 ~~vv~G~pa~~~~~~~~~~~~~  199 (271)
                      +++++++ +.+.+++++..+..
T Consensus       407 ~~~i~ag-~~v~~~v~~~~~~~  427 (448)
T PRK14357        407 GALIGAG-SVITEDVPPYSLAL  427 (448)
T ss_pred             CCEEcCC-CEECCcCCCCcEEE
Confidence            9998655 99999998877643

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.53  E-value=2.5e-13  Score=113.96  Aligned_cols=127  Identities=16%  Similarity=0.213  Sum_probs=89.0

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      +++++.|++++.|. ++.||+++.|++++.|..    +.||++|.|+.++.+.           ++.||++|.|++++.+
T Consensus         5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~----s~IG~~s~I~~~~~i~-----------~~~IG~~~~I~~~v~I   68 (204)
T TIGR03308         5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLRE----VALGDYSYVMRDCDII-----------YTTIGKFCSIAAMVRI   68 (204)
T ss_pred             cCCCCeECCCcEEe-ccEeCCCcEECCCcEEeC----CEECCCCEECCCcEEe-----------eeEECCCCEECCCCEE
Confidence            56777888888885 478999999999999973    6899999999999987           5889999999999887


Q ss_pred             ecee-eCCCcE--------------EccCc-----EEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCH
Q 024153          135 HGCT-VEDEAF--------------VGMGA-----TLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE  194 (271)
Q Consensus       135 ~~~~-Ig~~~~--------------Ig~~~-----~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~  194 (271)
                      .... .-++..              ...+.     ....++.||++++||.+++|.+++.|+++++++ ..+.+.+++++
T Consensus        69 ~~~~h~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~-~gs~v~~~i~~  147 (204)
T TIGR03308        69 NATNHPMERPTLHHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIA-AGAVVTKDVAP  147 (204)
T ss_pred             CCCCCCCCcccccccccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEEC-CCCEECCCCCC
Confidence            4310 000000              00000     123567777777777777777777777777764 33667777777


Q ss_pred             HHHH
Q 024153          195 EEMA  198 (271)
Q Consensus       195 ~~~~  198 (271)
                      ..+.
T Consensus       148 ~~~~  151 (204)
T TIGR03308       148 YTIV  151 (204)
T ss_pred             CcEE
Confidence            6653

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.51  E-value=3.1e-13  Score=127.67  Aligned_cols=140  Identities=13%  Similarity=0.205  Sum_probs=86.5

Q ss_pred             ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEE----------CCCCEEecCCcCCCCCccce
Q 024153           53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNI----------QDNSLVHVAKSNLAGKVLPT  120 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I----------~~~~~I~~~~~~~~~~~~~~  120 (271)
                      ..|++++.|++++.|.+++.|+.++.|+++|.|..+.  .++.||++|.|          ++++.|.....-    ..++
T Consensus       266 ~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i----~~~~  341 (482)
T PRK14352        266 TWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYL----RPGT  341 (482)
T ss_pred             EEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEe----cCCc
Confidence            3455566666666666666666666666666665441  12223333222          222222211110    1122


Q ss_pred             EEcC-----------------CcEECcCcEEeceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeC
Q 024153          121 IIGD-----------------NVTVGHSAVLHGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIP  176 (271)
Q Consensus       121 ~Ig~-----------------~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~  176 (271)
                      .||+                 ++.+++.+.+.+++||++|.||+++++..       +++||++++||.++.+.++++|+
T Consensus       342 vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig  421 (482)
T PRK14352        342 VLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVG  421 (482)
T ss_pred             EEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEEC
Confidence            3332                 23333333334578899999999988863       48999999999999999999999


Q ss_pred             CCcEEeccCceEccCCCHHHH
Q 024153          177 CGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       177 ~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ++++++ ..+.+.+++++..+
T Consensus       422 ~~~~ig-ags~v~~~v~~~~~  441 (482)
T PRK14352        422 DGAYTG-AGTVIREDVPPGAL  441 (482)
T ss_pred             CCcEEC-CCCEEcCCCCCCcE
Confidence            999985 44888889887764

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.49  E-value=6.6e-13  Score=106.53  Aligned_cols=99  Identities=21%  Similarity=0.380  Sum_probs=88.4

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-----eeeCCCcEEcc
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-----CTVEDEAFVGM  147 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-----~~Ig~~~~Ig~  147 (271)
                      +|++++|+++++|.++   +.||++|.|++++.|.+..       .+++||+++.|++++.|.+     +.||++|+|+.
T Consensus         2 ~~~~~~i~~~a~i~g~---v~ig~~~~I~~~~~I~~~~-------~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~   71 (153)
T cd04645           2 IDPSAFIAPNATVIGD---VTLGEGSSVWFGAVLRGDV-------NPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGH   71 (153)
T ss_pred             ccCCeEECCCCEEEEe---EEECCCcEEcCCeEEECCC-------CceEECCCCEECCCcEEecCCCCCeEEcCCcEECC
Confidence            6888999999999876   8999999999999998643       3789999999999999987     69999999999


Q ss_pred             CcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153          148 GATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG  182 (271)
Q Consensus       148 ~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~  182 (271)
                      ++.+.. +.||++++|++++.|..++.|++++.+.
T Consensus        72 ~~~i~~-~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig  105 (153)
T cd04645          72 GAVLHG-CTIGDNCLIGMGAIILDGAVIGKGSIVA  105 (153)
T ss_pred             CcEEee-eEECCCCEECCCCEEcCCCEECCCCEEC
Confidence            999965 8999999999999999888888888774

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.47  E-value=1.2e-12  Score=113.49  Aligned_cols=117  Identities=24%  Similarity=0.333  Sum_probs=68.7

Q ss_pred             CceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCC----CCCccceEEcCCcE
Q 024153           52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL----AGKVLPTIIGDNVT  127 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~----~~~~~~~~Ig~~~~  127 (271)
                      .+.++++++|++++.|.+ ..++.++.|+++++|...   +.||++|.||++|+|..+..-.    ....++++||++|.
T Consensus       109 ~a~V~~ga~Ig~gavI~p-~~V~iGa~Ig~gt~I~~~---a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~  184 (272)
T PRK11830        109 GAVVRRGAYIAPNVVLMP-SYVNIGAYVDEGTMVDTW---ATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCF  184 (272)
T ss_pred             CeEECCCCEECCCcEEEE-EEECCCCEECCCcEEccc---cEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCE
Confidence            344555556666655552 334444444445544432   3444444444444444332110    11123688888888


Q ss_pred             ECcCcEE-eceeeCCCcEEccCcEEccCcEECCCc-------EEccCcEecCC
Q 024153          128 VGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHA-------MVAAGALVRQN  172 (271)
Q Consensus       128 i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~-------~Ig~~svV~~~  172 (271)
                      ||.++.+ .++.||++|.|++++.|.+++.|++.+       .|-++|+|.++
T Consensus       185 IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~g  237 (272)
T PRK11830        185 IGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPG  237 (272)
T ss_pred             ECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEecC
Confidence            8888877 568888888888888888888888654       35566666544

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.46  E-value=6.6e-13  Score=124.61  Aligned_cols=143  Identities=14%  Similarity=0.189  Sum_probs=93.8

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCCC-------CCccceEEcCC
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNLA-------GKVLPTIIGDN  125 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~Ig~~  125 (271)
                      +...+.+++++.|.+++.|+.++.|++++.|....  .++.||++|.|++++.|....-...       ....++.|+++
T Consensus       262 ~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~  341 (456)
T PRK09451        262 LRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEG  341 (456)
T ss_pred             ECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCC
Confidence            34455677777777777777777778887776542  2455666666666666542211100       00112233333


Q ss_pred             cEECcCcEE-----------------eceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCCCcEE
Q 024153          126 VTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPCGEVW  181 (271)
Q Consensus       126 ~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~~~vv  181 (271)
                      +.|++++.+                 .++.||++|.||+++++..       +++||++|+||++++|.++++|++++++
T Consensus       342 ~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i  421 (456)
T PRK09451        342 AHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI  421 (456)
T ss_pred             ceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEE
Confidence            333333222                 2357888888888887743       4889999999999999999999999998


Q ss_pred             eccCceEccCCCHHHHH
Q 024153          182 GGNPARFLRKLTEEEMA  198 (271)
Q Consensus       182 ~G~pa~~~~~~~~~~~~  198 (271)
                      ++. +.+.+++++....
T Consensus       422 ~~g-s~v~~~v~~~~~~  437 (456)
T PRK09451        422 GAG-TTVTRDVAENELV  437 (456)
T ss_pred             CCC-CEEccccCCCCEE
Confidence            654 9999999876653

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.46  E-value=8.1e-13  Score=123.99  Aligned_cols=62  Identities=10%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             eeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHH
Q 024153          137 CTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAF  199 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~  199 (271)
                      ++||++|.||+++.+..       +++||+++++|++|.|.++++|+++++++. .+.+.++++++.+..
T Consensus       369 ~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~-~~~v~~~~~~~~~~~  437 (458)
T PRK14354        369 AEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAA-GSTITKDVPEDALAI  437 (458)
T ss_pred             cccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECC-CCEECCCCCCCCEEE
Confidence            45555666666665543       588999999999999999999999999854 489999999877643

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.46  E-value=9.4e-13  Score=108.66  Aligned_cols=107  Identities=27%  Similarity=0.444  Sum_probs=91.0

Q ss_pred             CCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccC
Q 024153           76 GSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDG  154 (271)
Q Consensus        76 ~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~  154 (271)
                      .+.+++.+.+.++   +.||++|.|+++++|..          +++||++|.|+.++.| +++.||++|+|+.++.+.++
T Consensus        84 ~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~  150 (197)
T cd03360          84 ATLIHPSAVVSPS---AVIGEGCVIMAGAVINP----------DARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGG  150 (197)
T ss_pred             ceEECCCeEECCC---CEECCCCEEcCCCEECC----------CCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCC
Confidence            3556666666544   67888888888888874          6889999999999998 46999999999999999999


Q ss_pred             cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          155 VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       155 v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      ++||++|+|++++.|.+++.|++++++ |..+.+.+++++..
T Consensus       151 ~~ig~~~~ig~~~~v~~~~~ig~~~~v-~~~~~v~~~~~~~~  191 (197)
T cd03360         151 VTIGEGAFIGAGATIIQGVTIGAGAII-GAGAVVTKDVPDGS  191 (197)
T ss_pred             cEECCCCEECCCCEEcCCCEECCCCEE-CCCCEEcCCCCCCC
Confidence            999999999999999999999999987 66788888876543

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.44  E-value=1.5e-12  Score=108.39  Aligned_cols=106  Identities=26%  Similarity=0.446  Sum_probs=90.3

Q ss_pred             CEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCc
Q 024153           77 SSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGV  155 (271)
Q Consensus        77 ~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v  155 (271)
                      +.+.+.+.+..+   +.||++|.|+++++|..          +++||++|.|+.++.|. ++.||++++|+.++.+.+++
T Consensus        88 ~~i~~~a~i~~~---~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~  154 (201)
T TIGR03570        88 TLIHPSAIVSPS---ASIGEGTVIMAGAVINP----------DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGV  154 (201)
T ss_pred             EEecCCeEECCC---CEECCCCEECCCCEECC----------CCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCc
Confidence            455666666543   67888899988888874          68899999999999995 59999999999999999999


Q ss_pred             EECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          156 YVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       156 ~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      +||++|+|++++++.+++.|++++++ |.++.+.+++++..
T Consensus       155 ~ig~~~~ig~~~~v~~~~~i~~~~~i-~~~~~v~~~~~~~~  194 (201)
T TIGR03570       155 VIGEGVFIGAGATIIQGVTIGAGAIV-GAGAVVTKDIPDGG  194 (201)
T ss_pred             EECCCCEECCCCEEeCCCEECCCCEE-CCCCEECCcCCCCC
Confidence            99999999999999999999999987 66688888877543

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.42  E-value=1.2e-12  Score=128.06  Aligned_cols=105  Identities=22%  Similarity=0.293  Sum_probs=84.9

Q ss_pred             cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccC
Q 024153           69 GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMG  148 (271)
Q Consensus        69 ~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~  148 (271)
                      -+++||+|+.|++ ..+. ..+.++||+||.|+++|.+.+.           .+.+     ....+..++||++|+||++
T Consensus       111 lGa~IG~~v~I~~-~~~~-~~~li~IG~~~~I~~~v~l~~~-----------~~~~-----~~l~~g~i~IG~~~~IG~~  172 (695)
T TIGR02353       111 LGAKIGKGVDIGS-LPPV-CTDLLTIGAGTIVRKEVMLLGY-----------RAER-----GRLHTGPVTLGRDAFIGTR  172 (695)
T ss_pred             cCCEECCCCEEEe-eecc-cCCceEECCCCEECCCCEEEcc-----------cCCC-----CceeecCcEECCCcEECCC
Confidence            3678888888877 3332 3456899999999999999742           1111     1123355899999999999


Q ss_pred             cEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC
Q 024153          149 ATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK  191 (271)
Q Consensus       149 ~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~  191 (271)
                      |+|.++++||++++|+++|.|.++..|++++++.|+||+.++.
T Consensus       173 s~I~~g~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~  215 (695)
T TIGR02353       173 STLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA  215 (695)
T ss_pred             CEEcCCCEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence            9999999999999999999999977799999999999999865

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.39  E-value=4.1e-12  Score=99.51  Aligned_cols=103  Identities=13%  Similarity=0.151  Sum_probs=74.2

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcE
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVT  127 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~  127 (271)
                      .+...+.|++++.|.+++.+..++.||++|.|..  +|...   +.||++|.|+++|.|......  ....++.||++|+
T Consensus         9 ~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~---a~Ighd~~IG~~~~I~~~l~G--~~~~pV~IG~~~~   81 (147)
T cd04649           9 RVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSG---VIVGKGSDVGGGASIMGTLSG--GGNNVISIGKRCL   81 (147)
T ss_pred             EECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCC---EEECCCCEECCCCEEEEECCC--CcccCEEECCCCE
Confidence            3455666777777777777777777777777752  22222   567777888877777732111  1223599999999


Q ss_pred             ECcCcEEeceeeCCCcEEccCcEEccCcEEC
Q 024153          128 VGHSAVLHGCTVEDEAFVGMGATLLDGVYVE  158 (271)
Q Consensus       128 i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig  158 (271)
                      ||.++.| ++.||++|.||++++|..+++|-
T Consensus        82 IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i~  111 (147)
T cd04649          82 LGANSGI-GISLGDNCIVEAGLYVTAGTKVT  111 (147)
T ss_pred             ECCCCEE-eEEECCCCEECCCCEEeCCeEEE
Confidence            9999999 89999999999999998887664

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK10502 putative acyl transferase; Provisional

Probab=99.36  E-value=6.9e-12  Score=103.50  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=83.7

Q ss_pred             CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEE-ccC
Q 024153           70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFV-GMG  148 (271)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~I-g~~  148 (271)
                      ++.||+++.|++++.|.. +.++.||++|.|++++.|...        ..++||++|.|+.++.|...   ++... ...
T Consensus        51 ga~iG~~~~I~~~a~i~~-~~~~~IG~~~~Ig~~~~I~~~--------~~v~IG~~~~I~~~~~I~~~---~h~~~~~~~  118 (182)
T PRK10502         51 GAKIGKGVVIRPSVRITY-PWKLTIGDYAWIGDDVWLYNL--------GEITIGAHCVISQKSYLCTG---SHDYSDPHF  118 (182)
T ss_pred             ccccCCCcEEcCCEEEec-CCeEEECCCeEECCCceeccc--------CceEECCCcEECCCeEEECC---CCCCcCCCc
Confidence            467888888888888874 356899999999999999742        25788888888877766321   11100 011


Q ss_pred             cEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          149 ATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       149 ~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ..+...++||++|+||++++|.++++|+++++++ ..+.+.++++++.+
T Consensus       119 ~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIg-a~svV~~~v~~~~v  166 (182)
T PRK10502        119 DLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVG-ARSSVFKSLPANTI  166 (182)
T ss_pred             ccccCCEEEcCCcEEcCCCEEcCCCEECCCCEEC-CCCEEecccCCCcE
Confidence            2345668889999999999998888999998885 44888888887654

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.33  E-value=1.4e-11  Score=94.29  Aligned_cols=108  Identities=20%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL  152 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~  152 (271)
                      ||+++.|++++.|.++   +.||++|.|++++.|..          ++.||++|.|++++.+.+..+.+.. +..++. .
T Consensus         1 ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~----------~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~~~~-~   65 (119)
T cd03358           1 IGDNCIIGTNVFIEND---VKIGDNVKIQSNVSIYE----------GVTIEDDVFIGPNVVFTNDLYPRSK-IYRKWE-L   65 (119)
T ss_pred             CCCCCEECCCcEECCC---cEECCCcEECCCcEEeC----------CeEECCCcEEcCCeEEecCCCCccc-cccccc-c
Confidence            3566666666666654   67777777777777752          5777777777777777654433322 222333 2


Q ss_pred             cCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          153 DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       153 ~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      .+++||++|+|++++++.+++.|++++++. ..+.+.+++++..
T Consensus        66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~-~~~~v~~~i~~~~  108 (119)
T cd03358          66 KGTTVKRGASIGANATILPGVTIGEYALVG-AGAVVTKDVPPYA  108 (119)
T ss_pred             CCcEECCCcEECcCCEEeCCcEECCCCEEc-cCCEEeCcCCCCe
Confidence            446777777777777776666777776663 3466656665544

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.32  E-value=7.5e-12  Score=122.54  Aligned_cols=106  Identities=26%  Similarity=0.433  Sum_probs=84.1

Q ss_pred             CCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCC
Q 024153           63 PSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDE  142 (271)
Q Consensus        63 ~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~  142 (271)
                      +.....-+++||+++.|........  ..++||++|.|+++|.|..+..           .+...     .+.+++||++
T Consensus       590 ~~~lr~lGa~IG~~v~i~~~~~~~~--dlv~IGd~~~I~~~~~i~~h~~-----------~~~~~-----~~~~v~IG~~  651 (695)
T TIGR02353       590 PAILRLLGVKIGRGVYIDGTDLTER--DLVTIGDDSTLNEGSVIQTHLF-----------EDRVM-----KSDTVTIGDG  651 (695)
T ss_pred             HHHHHHCCCEECCCeEECCeeccCC--CCeEECCCCEECCCCEEEeccc-----------ccccc-----ccCCeEECCC
Confidence            3334445777888888876655543  3479999999999999975211           11111     3456999999


Q ss_pred             cEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCc
Q 024153          143 AFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPA  186 (271)
Q Consensus       143 ~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa  186 (271)
                      |+||++++|.++++||++++|+++|+|.++..+++++++.|+||
T Consensus       652 ~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~~G~Pa  695 (695)
T TIGR02353       652 ATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNPA  695 (695)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEEEeccC
Confidence            99999999999999999999999999999888999999999996

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.31  E-value=4.3e-11  Score=89.23  Aligned_cols=86  Identities=20%  Similarity=0.272  Sum_probs=61.6

Q ss_pred             cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccC
Q 024153           69 GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMG  148 (271)
Q Consensus        69 ~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~  148 (271)
                      +++.+++++.|.+++.+.+.   +.||++|.|++++.|..          +++||++|.|+.  .+.++.|++++.++.+
T Consensus        10 g~v~ig~~~~I~~~~~i~g~---v~IG~~~~Ig~~~~I~~----------~v~IG~~~~Ig~--~i~~svi~~~~~i~~~   74 (101)
T cd05635          10 GPIYIGKDAVIEPFAVIEGP---VYIGPGSRVKMGARIYG----------NTTIGPTCKIGG--EVEDSIIEGYSNKQHD   74 (101)
T ss_pred             CCEEECCCCEECCCCEEeCC---CEECCCCEECCCCEEeC----------cCEECCCCEECC--EECccEEcCCCEecCc
Confidence            35777777878777777755   77888888888888764          577777777764  4566777777777777


Q ss_pred             cEEccCcEECCCcEEccCcEec
Q 024153          149 ATLLDGVYVEKHAMVAAGALVR  170 (271)
Q Consensus       149 ~~I~~~v~Ig~~~~Ig~~svV~  170 (271)
                      +.|. +++||+++.|++++...
T Consensus        75 ~~lg-~siIg~~v~ig~~~~~~   95 (101)
T cd05635          75 GFLG-HSYLGSWCNLGAGTNNS   95 (101)
T ss_pred             CEEe-eeEECCCCEECCCceec
Confidence            7764 67777777777766543

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.30  E-value=2.5e-11  Score=101.52  Aligned_cols=117  Identities=15%  Similarity=0.134  Sum_probs=83.4

Q ss_pred             EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEece-eeCCCcEEccCcE
Q 024153           72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGC-TVEDEAFVGMGAT  150 (271)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~-~Ig~~~~Ig~~~~  150 (271)
                      .+|+++.|.+.+.+. ...++.||+++.|+.+|+|...        +.++||++|.|++++.|... .--+...-..+..
T Consensus        57 ~ig~~~~I~~~~~~~-~g~ni~IG~~v~In~~~~I~d~--------~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~  127 (203)
T PRK09527         57 TVGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVDD--------YTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEM  127 (203)
T ss_pred             hcCCCcEEcCCEEEe-eCCCcEEcCCcEECCCcEEecC--------CCEEECCCCEECCCCEEEeCCCCCChhhcccccc
Confidence            478888888888874 2245899999999999999742        36899999999999988531 0000000112333


Q ss_pred             EccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          151 LLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       151 I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      ....++||++|+||++++|.++++|+++++++. .+.+.+++++..+.
T Consensus       128 ~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIga-gsvV~kdvp~~~v~  174 (203)
T PRK09527        128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGA-GSVVTKDIPPNVVA  174 (203)
T ss_pred             ccCCeEECCCcEECCCCEEcCCCEECCCCEECC-CCEEcccCCCCcEE
Confidence            445688888888888888888888888888754 47888888877654

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.29  E-value=2.4e-11  Score=111.45  Aligned_cols=103  Identities=19%  Similarity=0.393  Sum_probs=74.2

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      +..++.+.+++.|++++.| .++.|+++|+|.+...++.||++|.|+++|.|.           ++.|++++.|++++.+
T Consensus       273 ~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~-----------~svi~~~~~i~~~~~i  340 (380)
T PRK05293        273 IYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK-----------DSVIMPGAKIGENVVI  340 (380)
T ss_pred             eecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-----------CCEEeCCCEECCCeEE
Confidence            3344444555555555555 355666666665433457899999999999987           6889999999999999


Q ss_pred             eceeeCCCcEEccCcEEccC----cEECCCcEEccCcEe
Q 024153          135 HGCTVEDEAFVGMGATLLDG----VYVEKHAMVAAGALV  169 (271)
Q Consensus       135 ~~~~Ig~~~~Ig~~~~I~~~----v~Ig~~~~Ig~~svV  169 (271)
                      .+++|++++.|+.++.+.++    .+||+++.|..++++
T Consensus       341 ~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        341 ERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI  379 (380)
T ss_pred             eEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence            99999999999999888775    556666666555544

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.29  E-value=3.8e-11  Score=85.05  Aligned_cols=77  Identities=29%  Similarity=0.495  Sum_probs=52.8

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL  152 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~  152 (271)
                      ||+++.|++++.|..    ..||++|.|++++.|.           ++.|++++.|++++.+.++.|++++.|+.++.+.
T Consensus         2 ig~~~~I~~~~~i~~----s~ig~~~~ig~~~~i~-----------~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~   66 (79)
T cd05787           2 IGRGTSIGEGTTIKN----SVIGRNCKIGKNVVID-----------NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP   66 (79)
T ss_pred             ccCCCEECCCCEEec----cEECCCCEECCCCEEe-----------CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence            456666666666652    4677777777777775           4677777777777777777777777777776666


Q ss_pred             cCcEECCCcEEc
Q 024153          153 DGVYVEKHAMVA  164 (271)
Q Consensus       153 ~~v~Ig~~~~Ig  164 (271)
                      .+++|++++.||
T Consensus        67 ~~~~v~~~~~ig   78 (79)
T cd05787          67 PGSLISFGVVIG   78 (79)
T ss_pred             CCCEEeCCcEeC
Confidence            666666666554

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.28  E-value=2.5e-11  Score=103.13  Aligned_cols=118  Identities=20%  Similarity=0.325  Sum_probs=79.7

Q ss_pred             CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc-EEeceeeCCCcEEccC
Q 024153           70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA-VLHGCTVEDEAFVGMG  148 (271)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~-~i~~~~Ig~~~~Ig~~  148 (271)
                      ++.++.+|.|.-.+++.+   ...||+||.|+.++.|.+--.  .+...++.||+||.||+++ .+.|+.+|++|.|+++
T Consensus       138 gA~~~~gtMVd~~as~G~---~a~VGkn~higgGa~I~GVLe--p~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aG  212 (271)
T COG2171         138 GAGTGEGTMVDGRASVGS---CAQVGKNSHIGGGASIGGVLE--PLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAG  212 (271)
T ss_pred             CcccCcceEEeeeeeeec---cEEECCCcccCCcceEeEEec--CCCCCCeEECCccEeccccceEeeeEeCCCcEEecc
Confidence            334444444444444443   378888888888888876333  2345699999999999998 7899999999999999


Q ss_pred             cEEccCcEECCCc--EEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          149 ATLLDGVYVEKHA--MVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       149 ~~I~~~v~Ig~~~--~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      +.|.+++.|.+-.  -+ ++++|..+ .+| +.... ..+++++.++...
T Consensus       213 v~I~~~tki~~~~~g~~-~~svv~~~-~lp-g~~~~-~~~~ivk~vd~kt  258 (271)
T COG2171         213 VFITQDTKIYDRVAGRV-AGSVVVAG-TLP-GGLSL-YCASIVKQVDAKT  258 (271)
T ss_pred             eEEeCCcceEEeecccc-ccceEeec-ccC-CCcce-eeeeeeeehhhhh
Confidence            9999999887632  23 55665544 344 11111 1246777776555

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.28  E-value=8.2e-11  Score=87.71  Aligned_cols=83  Identities=27%  Similarity=0.362  Sum_probs=47.6

Q ss_pred             ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153           53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA  132 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~  132 (271)
                      +.+++++.|.+++.+.+++.||+++.|++++.|.+.   +.||++|.|+.  .|.           ++.|++++.+.+++
T Consensus        12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~---v~IG~~~~Ig~--~i~-----------~svi~~~~~i~~~~   75 (101)
T cd05635          12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGN---TTIGPTCKIGG--EVE-----------DSIIEGYSNKQHDG   75 (101)
T ss_pred             EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCc---CEECCCCEECC--EEC-----------ccEEcCCCEecCcC
Confidence            455566666666666666666666666666666543   55555555543  232           45555556666655


Q ss_pred             EEeceeeCCCcEEccCcEE
Q 024153          133 VLHGCTVEDEAFVGMGATL  151 (271)
Q Consensus       133 ~i~~~~Ig~~~~Ig~~~~I  151 (271)
                      .|.+++||+++.||+++..
T Consensus        76 ~lg~siIg~~v~ig~~~~~   94 (101)
T cd05635          76 FLGHSYLGSWCNLGAGTNN   94 (101)
T ss_pred             EEeeeEECCCCEECCCcee
Confidence            5555666666666655544

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.28  E-value=6.2e-11  Score=98.65  Aligned_cols=129  Identities=12%  Similarity=0.197  Sum_probs=89.4

Q ss_pred             EECCCcEE--ecCeEECCCCEEccCcEEec-CCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec
Q 024153           60 FLAPSASI--IGDVQVGRGSSIWYGCVLRG-DVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG  136 (271)
Q Consensus        60 ~I~~~~~i--~~~v~IG~~~~I~~~~~I~~-~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~  136 (271)
                      +|.++..+  +.++.+|+++.++.++.+.. +.+.+.||++|.|++++.|...        .+++||++|.|++++.|.+
T Consensus        31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~--------~~v~IG~~v~Ig~~v~I~~  102 (192)
T PRK09677         31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACI--------ESITIGRDTLIASKVFITD  102 (192)
T ss_pred             EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccC--------ceEEECCCCEECCCeEEEC
Confidence            66665554  35688999999999999843 3456999999999999999742        3689999999999998865


Q ss_pred             eeeC----CCcEEccC------cEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          137 CTVE----DEAFVGMG------ATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       137 ~~Ig----~~~~Ig~~------~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ...|    ...+...+      -.-..+++||++++|++++.+.++++|+++++++ ..+.+.+++++..+
T Consensus       103 ~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Ig-a~s~v~~~i~~~~~  172 (192)
T PRK09677        103 HNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVG-ANSVVTKSIPENTV  172 (192)
T ss_pred             CCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEEC-CCCEECcccCCCcE
Confidence            2211    11111111      1123457777778887777777777788887774 33777777766554

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.27  E-value=6.4e-11  Score=84.62  Aligned_cols=78  Identities=24%  Similarity=0.368  Sum_probs=48.1

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL  152 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~  152 (271)
                      ||+++.|++++.|. +   +.||++|.|++++.|.           ++.|++++.|++++.+.++.|++++.|++++.+.
T Consensus         2 ig~~~~I~~~~~i~-~---~~Ig~~~~I~~~~~i~-----------~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~   66 (81)
T cd04652           2 VGENTQVGEKTSIK-R---SVIGANCKIGKRVKIT-----------NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK   66 (81)
T ss_pred             ccCCCEECCCCEEe-C---cEECCCCEECCCCEEe-----------CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc
Confidence            45555555555554 2   4566666666666665           4566677777777777667777777777776663


Q ss_pred             cCcEECCCcEEccC
Q 024153          153 DGVYVEKHAMVAAG  166 (271)
Q Consensus       153 ~~v~Ig~~~~Ig~~  166 (271)
                       ++.||+++.|+++
T Consensus        67 -~~ii~~~~~i~~~   79 (81)
T cd04652          67 -DCLVGSGYRVEAG   79 (81)
T ss_pred             -cCEECCCcEeCCC
Confidence             3555555555544

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.26  E-value=7.3e-11  Score=102.88  Aligned_cols=109  Identities=16%  Similarity=0.187  Sum_probs=79.9

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcE-EecC------CCceEECCCCEECCCCEEecCCcCCCCCccc
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCV-LRGD------VNSISIGSGTNIQDNSLVHVAKSNLAGKVLP  119 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~-I~~~------~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~  119 (271)
                      ..+..+++|++++.|.++++|+.++.|..+++|+.++. +...      ...+.||++|.|+.+|.|...-..  +....
T Consensus       173 yVvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsG--g~~~~  250 (341)
T TIGR03536       173 YVVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSG--GGNIV  250 (341)
T ss_pred             eEccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeC--CCcee
Confidence            35567778888888888888887777777777777776 2211      134778888888888888542111  01113


Q ss_pred             eEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEEC
Q 024153          120 TIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVE  158 (271)
Q Consensus       120 ~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig  158 (271)
                      +.||++|+||.++.+ ++.||++|+||++++|..+++|-
T Consensus       251 V~IGe~~lIGagA~I-GI~IGd~~iIGAGavVtagTkI~  288 (341)
T TIGR03536       251 ISVGEGCLLGANAGI-GIPLGDRCTVEAGLYITAGTKVA  288 (341)
T ss_pred             EEECCCcEECCCCEE-eeEECCCCEECCCCEEeCCcEEE
Confidence            889999999999998 99999999999999998887664

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PRK10191 putative acyl transferase; Provisional

Probab=99.25  E-value=5.6e-11  Score=94.25  Aligned_cols=36  Identities=31%  Similarity=0.585  Sum_probs=31.9

Q ss_pred             ceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccC
Q 024153          119 PTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG  154 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~  154 (271)
                      .+.||++|+|++++.+.+ +.||++++|+++++|.++
T Consensus        92 ~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d  128 (146)
T PRK10191         92 CPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS  128 (146)
T ss_pred             CCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence            468999999999998865 999999999999999875

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.25  E-value=4e-11  Score=97.12  Aligned_cols=69  Identities=22%  Similarity=0.291  Sum_probs=52.1

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      +.||++|.|+++|+|......  ...+.++||++|.|++++.+.+ ++||++|+||++++|.++  |.+++++.
T Consensus        88 ~~IG~~~~I~~~v~ig~~~~~--~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~  157 (162)
T TIGR01172        88 AVIGDDVTIYHGVTLGGTGKE--KGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD--VPPGATVV  157 (162)
T ss_pred             CEECCCCEEcCCCEECCCccc--cCCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC--CCCCCEEE
Confidence            467777777777777643211  1124579999999999998866 999999999999999986  56666553

Cysteine biosynthesis

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.25  E-value=8.2e-11  Score=83.48  Aligned_cols=77  Identities=22%  Similarity=0.418  Sum_probs=50.3

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL  152 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~  152 (271)
                      ||+++.|++++.|..    +.||++|.|++++.|.           ++.|++++.|++++.+.+++|++++.|+.++.+.
T Consensus         2 ig~~~~I~~~~~i~~----s~ig~~~~Ig~~~~i~-----------~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~   66 (79)
T cd03356           2 IGESTVIGENAIIKN----SVIGDNVRIGDGVTIT-----------NSILMDNVTIGANSVIVDSIIGDNAVIGENVRVV   66 (79)
T ss_pred             ccCCcEECCCCEEeC----CEECCCCEECCCCEEe-----------CCEEeCCCEECCCCEEECCEECCCCEECCCCEEc
Confidence            445555555555542    3566677777777765           4667777777777777777777777777777776


Q ss_pred             cCcEECCCcEEc
Q 024153          153 DGVYVEKHAMVA  164 (271)
Q Consensus       153 ~~v~Ig~~~~Ig  164 (271)
                      .++.+++++.|+
T Consensus        67 ~~~~ig~~~~i~   78 (79)
T cd03356          67 NLCIIGDDVVVE   78 (79)
T ss_pred             CCeEECCCeEEC
Confidence            666666666554

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.23  E-value=1.3e-10  Score=82.96  Aligned_cols=79  Identities=22%  Similarity=0.312  Sum_probs=69.6

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      |++++.|++++.|. ++.||++|.|++++.|..    ..|+++|.|++++.+.           ++.|++++.|++++.+
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~----s~i~~~~~ig~~~~l~-----------~svi~~~~~i~~~~~v   65 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITN----CVIMDNVTIEDGCTLE-----------NCIIGNGAVIGEKCKL   65 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeC----cEEeCCCEECCCCEEe-----------ccEEeCCCEECCCCEE
Confidence            67888888888886 688999999999999874    5899999999999997           6899999999999999


Q ss_pred             eceeeCCCcEEccCc
Q 024153          135 HGCTVEDEAFVGMGA  149 (271)
Q Consensus       135 ~~~~Ig~~~~Ig~~~  149 (271)
                      .++.||+++.|++++
T Consensus        66 ~~~ii~~~~~i~~~~   80 (81)
T cd04652          66 KDCLVGSGYRVEAGT   80 (81)
T ss_pred             ccCEECCCcEeCCCC
Confidence            989999888888764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.20  E-value=1.4e-10  Score=81.52  Aligned_cols=77  Identities=27%  Similarity=0.456  Sum_probs=57.8

Q ss_pred             EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEE
Q 024153           72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATL  151 (271)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I  151 (271)
                      +||+++.|+++++|.+.   +.||++|.|++++.|.....           ..        ....+.||++|+++.++.+
T Consensus         2 ~ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~-----------~~--------~~~~~~ig~~~~v~~~~~i   59 (78)
T cd00208           2 FIGEGVKIHPKAVIRGP---VVIGDNVNIGPGAVIGAATG-----------PN--------EKNPTIIGDNVEIGANAVI   59 (78)
T ss_pred             EECCCeEECCCCEEeCc---EEECCCCEECCCCEEEeccC-----------CC--------ccCCcEECCCcEECCCCEE
Confidence            56777777777777654   78888888888888875321           00        2244788889999999999


Q ss_pred             ccCcEECCCcEEccCcEec
Q 024153          152 LDGVYVEKHAMVAAGALVR  170 (271)
Q Consensus       152 ~~~v~Ig~~~~Ig~~svV~  170 (271)
                      .++++||+++.|++++.|.
T Consensus        60 ~~~~~ig~~~~i~~~s~v~   78 (78)
T cd00208          60 HGGVKIGDNAVIGAGAVVT   78 (78)
T ss_pred             eCCCEECCCCEECcCcEeC
Confidence            8889999999998888763

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.19  E-value=1.6e-10  Score=100.23  Aligned_cols=64  Identities=23%  Similarity=0.384  Sum_probs=49.6

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEEC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVE  158 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig  158 (271)
                      +.||++|.|++++.|.+.-..  +....+.||++|+||.++.| ++.||++|.||++++|..++.|-
T Consensus       200 vvIGd~~~IgpGvsI~G~LsG--g~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVtkgT~v~  263 (319)
T TIGR03535       200 VVVGDGSDIGGGASIMGTLSG--GGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYVTAGTKVT  263 (319)
T ss_pred             CEECCCCEECCCceecceecC--CCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEEeCCeEEE
Confidence            677777777777775431110  01224999999999999999 99999999999999999987663

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.18  E-value=1.2e-10  Score=95.05  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=80.4

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEece-eeCCCcEEccCcEE
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGC-TVEDEAFVGMGATL  151 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~-~Ig~~~~Ig~~~~I  151 (271)
                      +++++.|.+...+.. ...+.||+++.|+.+++|...        ..++||+++.|++++.|... .--+......+..+
T Consensus        45 ~~~~~~i~~~~~~~~-~~~i~IG~~v~I~~~~~i~~~--------~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~  115 (169)
T cd03357          45 VGENVYIEPPFHCDY-GYNIHIGDNFYANFNCTILDV--------APVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEY  115 (169)
T ss_pred             cCCCCEEcCCEEEEe-CCcCEECCCceEcCCEEEecc--------CcEEECCCCEECCCCEEEeCCCCCChhHcccccee
Confidence            566677766665531 124789999999999888632        36889999999988888431 00011111134455


Q ss_pred             ccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          152 LDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       152 ~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ..+++||++|+|++++.|.++++|++++++ |..|.+.+++++..+
T Consensus       116 ~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~V-gagavV~~~vp~~~v  160 (169)
T cd03357         116 AKPITIGDNVWIGGGVIILPGVTIGDNSVI-GAGSVVTKDIPANVV  160 (169)
T ss_pred             cCCcEeCCCEEECCCCEEeCCCEECCCCEE-CCCCEEccccCCCcE
Confidence            677888899999999998888889999887 455888888877654

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.18  E-value=2.2e-10  Score=81.10  Aligned_cols=76  Identities=25%  Similarity=0.452  Sum_probs=62.4

Q ss_pred             ECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCc
Q 024153           94 IGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT  173 (271)
Q Consensus        94 IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~  173 (271)
                      ||++|.|++++.|.           ++.|++++.|++++.|.++.|++++.|+.++.|. +++|++++.|+.++.+..++
T Consensus         2 ig~~~~I~~~~~i~-----------~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~   69 (79)
T cd05787           2 IGRGTSIGEGTTIK-----------NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGS   69 (79)
T ss_pred             ccCCCEECCCCEEe-----------ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECCCC
Confidence            78899999999986           5789999999999999999999999999998886 57777777777777766666


Q ss_pred             eeCCCcEE
Q 024153          174 KIPCGEVW  181 (271)
Q Consensus       174 ~I~~~~vv  181 (271)
                      .+++++.+
T Consensus        70 ~v~~~~~i   77 (79)
T cd05787          70 LISFGVVI   77 (79)
T ss_pred             EEeCCcEe
Confidence            66665544

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.18  E-value=2.8e-10  Score=81.03  Aligned_cols=46  Identities=17%  Similarity=0.115  Sum_probs=27.2

Q ss_pred             ceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153          119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      ++.+++++.|++++.+.++.+++++.+++++.+..+..||+++.|+
T Consensus        34 ~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824          34 RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence            3555555666666666666666666666666665555555555553

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.18  E-value=3.6e-10  Score=84.92  Aligned_cols=98  Identities=24%  Similarity=0.399  Sum_probs=73.7

Q ss_pred             ceECCCCEECCCcEEec--CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153           53 PVVNKDVFLAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH  130 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~  130 (271)
                      +.|+++++|++++.|.+  ++.||++|.|++++.|... ....++.++.+......           .++.||+++.|+.
T Consensus         2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~-~~~~~~~~~~~~~~~~~-----------~~~~Ig~~~~ig~   69 (109)
T cd04647           2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH-NHDIDDPERPIEQGVTS-----------APIVIGDDVWIGA   69 (109)
T ss_pred             eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC-CCCCCcccccccccccc-----------CCeEECCCCEECC
Confidence            57899999999999988  8999999999999999854 22222223322222222           3789999999999


Q ss_pred             CcEE-eceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153          131 SAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus       131 ~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      ++.+ .++.||++|+|++++.|..  .+.++++++
T Consensus        70 ~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~  102 (109)
T cd04647          70 NVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA  102 (109)
T ss_pred             CCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence            9988 5699999999999998883  566766654

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.18  E-value=2.2e-10  Score=99.48  Aligned_cols=99  Identities=22%  Similarity=0.251  Sum_probs=67.3

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      +..++.|+|++.|+.++.|+.+    .+.+|..+   +.||++|.|..+++|.+.....  .....+||++|.||.++.|
T Consensus       138 ~~~gidI~~~a~IG~g~~I~h~----~givIG~~---a~IGdnv~I~~~VtiGg~~~~~--~~~~p~IGd~V~IGaga~I  208 (273)
T PRK11132        138 VAFQVDIHPAAKIGRGIMLDHA----TGIVIGET---AVIENDVSILQSVTLGGTGKTS--GDRHPKIREGVMIGAGAKI  208 (273)
T ss_pred             eeeeeEecCcceECCCeEEcCC----CCeEECCC---CEECCCCEEcCCcEEecCcccC--CCcCCEECCCcEEcCCCEE
Confidence            3444455555444444444332    23455433   7899999999999997532211  1124689999999999988


Q ss_pred             ec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153          135 HG-CTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus       135 ~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      .+ ++||++|.||++++|..+  |.+++++.
T Consensus       209 lggv~IG~~a~IGAgSvV~~d--Vp~~~~v~  237 (273)
T PRK11132        209 LGNIEVGRGAKIGAGSVVLQP--VPPHTTAA  237 (273)
T ss_pred             cCCCEECCCCEECCCCEECcc--cCCCcEEE
Confidence            55 999999999999999875  66666654

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.18  E-value=2.6e-10  Score=85.89  Aligned_cols=95  Identities=21%  Similarity=0.221  Sum_probs=70.6

Q ss_pred             CceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCc-EEccCcEEccCcEECCCcEEccCcE
Q 024153           90 NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEA-FVGMGATLLDGVYVEKHAMVAAGAL  168 (271)
Q Consensus        90 ~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~-~Ig~~~~I~~~v~Ig~~~~Ig~~sv  168 (271)
                      .++.||++|.|++++.|...        ..++||++|.|++++.|...   ++. .......+...+.||++|+|++++.
T Consensus         2 ~~i~iG~~~~I~~~~~i~~~--------~~i~IG~~~~I~~~~~I~~~---~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~   70 (107)
T cd05825           2 WNLTIGDNSWIGEGVWIYNL--------APVTIGSDACISQGAYLCTG---SHDYRSPAFPLITAPIVIGDGAWVAAEAF   70 (107)
T ss_pred             ceEEECCCCEECCCCEEeeC--------CceEECCCCEECCCeEeecC---CCCCCcCccceecCCEEECCCCEECCCCE
Confidence            46899999999999999842        36899999999999988431   111 1122345567788888888888888


Q ss_pred             ecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          169 VRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       169 V~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      +.++++|+++++++ ..+.+.+++++..
T Consensus        71 i~~g~~Ig~~~~i~-~gs~v~~~~~~~~   97 (107)
T cd05825          71 VGPGVTIGEGAVVG-ARSVVVRDLPAWT   97 (107)
T ss_pred             ECCCCEECCCCEEC-CCCEEeCcCCCCC
Confidence            88888888888875 4477777776544

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=3.5e-10  Score=102.92  Aligned_cols=100  Identities=23%  Similarity=0.399  Sum_probs=85.5

Q ss_pred             ECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeC
Q 024153           61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVE  140 (271)
Q Consensus        61 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig  140 (271)
                      +.. +.+.+++.||++|.|++++.|.+.   +.||++|.|++++.|.           ++.|+++|.|++++.+.+++||
T Consensus       253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~i~-----------~Sii~~~~~i~~~~~i~~sIi~  317 (358)
T COG1208         253 IRS-AYIIGPVVIGPGAKIGPGALIGPY---TVIGEGVTIGNGVEIK-----------NSIIMDNVVIGHGSYIGDSIIG  317 (358)
T ss_pred             ccc-ceEeCCEEECCCCEECCCCEECCC---cEECCCCEECCCcEEE-----------eeEEEcCCEECCCCEEeeeEEc
Confidence            444 788899999999999999999876   8999999999999998           6999999999999999999999


Q ss_pred             CCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153          141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG  182 (271)
Q Consensus       141 ~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~  182 (271)
                      ++|.||++. .     ||+ +.++.++.+.+++++++++++.
T Consensus       318 ~~~~ig~~~-~-----i~d-~~~g~~~~i~~g~~~~~~~~~~  352 (358)
T COG1208         318 ENCKIGASL-I-----IGD-VVIGINSEILPGVVVGPGSVVE  352 (358)
T ss_pred             CCcEECCce-e-----ecc-eEecCceEEcCceEeCCCcccc
Confidence            999999922 2     777 7777777777777777776653

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.15  E-value=4.2e-10  Score=92.82  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=60.9

Q ss_pred             ceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEe
Q 024153           91 SISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV  169 (271)
Q Consensus        91 ~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV  169 (271)
                      ++.||+++.|+.+|+|...        ..++||++|.|++++.+.. ....+......+..+...++||++|+||++++|
T Consensus        73 ~i~iG~~~~in~~~~i~d~--------~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I  144 (183)
T PRK10092         73 NIFLGNNFYANFDCVMLDV--------CPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVI  144 (183)
T ss_pred             CcEEcCCcEECCceEEecC--------ceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEE
Confidence            3667777777777776532        2457888888888777743 222233333334455566777777777777777


Q ss_pred             cCCceeCCCcEEeccCceEccCCCHHH
Q 024153          170 RQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       170 ~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      .++++|+++++++ ..+.+.+++++..
T Consensus       145 ~~gv~IG~~~vIg-agsvV~~di~~~~  170 (183)
T PRK10092        145 NPGVTIGDNVVVA-SGAVVTKDVPDNV  170 (183)
T ss_pred             CCCCEECCCCEEC-CCCEEccccCCCc
Confidence            7777777777764 3366667766544

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.2e-10  Score=108.81  Aligned_cols=93  Identities=14%  Similarity=0.317  Sum_probs=66.1

Q ss_pred             CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCc
Q 024153           70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGA  149 (271)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~  149 (271)
                      +++-++.+.+.+.+.+..+   +.||.++.||.++.|.           ++.||.+|.||.|+.|.++.|+++|+||.||
T Consensus       315 ~IYk~~dv~~~~~~~v~~~---~~ig~gT~Ig~g~~I~-----------NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc  380 (673)
T KOG1461|consen  315 NIYKSPDVVLSHSVIVGAN---VVIGAGTKIGSGSKIS-----------NSVIGANCRIGSNVRIKNSFIWNNVTIGDNC  380 (673)
T ss_pred             ccccCccceehhhccccce---EEecccccccCCCeee-----------cceecCCCEecCceEEeeeeeecCcEECCCc
Confidence            5556666666666666644   7888899999999998           7999999999999999999999999999887


Q ss_pred             EEccCcEECCCcEEccCcEecCCceeCC
Q 024153          150 TLLDGVYVEKHAMVAAGALVRQNTKIPC  177 (271)
Q Consensus       150 ~I~~~v~Ig~~~~Ig~~svV~~~~~I~~  177 (271)
                      .|.. +.|++++.|+.++.+.+++.++.
T Consensus       381 ~I~~-aii~d~v~i~~~~~l~~g~vl~~  407 (673)
T KOG1461|consen  381 RIDH-AIICDDVKIGEGAILKPGSVLGF  407 (673)
T ss_pred             eEee-eEeecCcEeCCCcccCCCcEEee
Confidence            7532 44444444444433333333333

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.14  E-value=6.5e-10  Score=79.15  Aligned_cols=77  Identities=26%  Similarity=0.343  Sum_probs=62.9

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      +++++.|++++.|++++.||++|.|++++.|..    ..|++++.|++++.|.           ++.+++++.+++++.+
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~----sii~~~~~i~~~~~i~-----------~sii~~~~~v~~~~~~   66 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQR----CVILSNSTVRDHSWVK-----------SSIVGWNSTVGRWTRL   66 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEee----eEEcCCCEECCCCEEe-----------CCEEeCCCEECCCcEE
Confidence            456677777777777777888888888888873    5889999999999997           6899999999999888


Q ss_pred             ec-eeeCCCcEEc
Q 024153          135 HG-CTVEDEAFVG  146 (271)
Q Consensus       135 ~~-~~Ig~~~~Ig  146 (271)
                      .+ +.||+++.|+
T Consensus        67 ~~~~~ig~~~~i~   79 (80)
T cd05824          67 ENVTVLGDDVTIK   79 (80)
T ss_pred             ecCEEECCceEEC
Confidence            76 7777777765

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.14  E-value=7.4e-10  Score=78.50  Aligned_cols=76  Identities=22%  Similarity=0.397  Sum_probs=62.1

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      |++++.|++++.|.+ +.||++|.|++++.|..    ..|+++|.|++++.+.           ++.|++++.|++++.+
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~----svi~~~~~i~~~~~i~-----------~svv~~~~~i~~~~~i   65 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITN----SILMDNVTIGANSVIV-----------DSIIGDNAVIGENVRV   65 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEeC----CEEeCCCEECCCCEEE-----------CCEECCCCEECCCCEE
Confidence            677788888888876 88899999999999874    5899999999999997           5789999988888877


Q ss_pred             ec-eeeCCCcEEc
Q 024153          135 HG-CTVEDEAFVG  146 (271)
Q Consensus       135 ~~-~~Ig~~~~Ig  146 (271)
                      .+ +.|++++.|+
T Consensus        66 ~~~~~ig~~~~i~   78 (79)
T cd03356          66 VNLCIIGDDVVVE   78 (79)
T ss_pred             cCCeEECCCeEEC
Confidence            66 6677666664

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02739 serine acetyltransferase

Probab=99.13  E-value=3e-10  Score=100.81  Aligned_cols=69  Identities=25%  Similarity=0.334  Sum_probs=50.7

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      +.||++|.|..+|+|.+....  ...+..+||++|+||+++.|-+ ++||++|.||+|++|...  |.+++++.
T Consensus       232 avIGdnv~I~~gVTIGg~g~~--~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvv  301 (355)
T PLN02739        232 AVIGDRVSILHGVTLGGTGKE--TGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVA  301 (355)
T ss_pred             CEECCCCEEcCCceeCCcCCc--CCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEE
Confidence            456667777777777543211  0124679999999999998855 999999999999999875  66666654

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.10  E-value=1.8e-09  Score=80.89  Aligned_cols=77  Identities=18%  Similarity=0.339  Sum_probs=38.9

Q ss_pred             EECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceee
Q 024153           60 FLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTV  139 (271)
Q Consensus        60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~I  139 (271)
                      +|++++.|. ++.||++|.|+ ++.|..    ..|+++|.|++++.|.           ++.|++++.|+.++.+.++.|
T Consensus         3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~~----svi~~~~~Ig~~~~I~-----------~siI~~~~~Ig~~~~i~~sii   65 (104)
T cd04651           3 YIGRRGEVK-NSLVSEGCIIS-GGTVEN----SVLFRGVRVGSGSVVE-----------DSVIMPNVGIGRNAVIRRAII   65 (104)
T ss_pred             eecCCCEEE-eEEECCCCEEc-CeEEEe----CEEeCCCEECCCCEEE-----------EeEEcCCCEECCCCEEEeEEE
Confidence            344444442 34455555555 455542    3555555555555554           355555555555555555555


Q ss_pred             CCCcEEccCcEEcc
Q 024153          140 EDEAFVGMGATLLD  153 (271)
Q Consensus       140 g~~~~Ig~~~~I~~  153 (271)
                      |+++.|++++.+.+
T Consensus        66 g~~~~Ig~~~~v~~   79 (104)
T cd04651          66 DKNVVIPDGVVIGG   79 (104)
T ss_pred             CCCCEECCCCEECC
Confidence            55554444444433

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PLN02694 serine O-acetyltransferase

Probab=99.10  E-value=5.9e-10  Score=97.06  Aligned_cols=69  Identities=22%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      +.||++|.|..++++.+...  ......++||++|.||.++.| .+++||++|.||++++|..+  |.+++++.
T Consensus       187 a~IGdnv~I~~~VtLGg~g~--~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kd--VP~~~~v~  256 (294)
T PLN02694        187 AVIGNNVSILHHVTLGGTGK--ACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLID--VPPRTTAV  256 (294)
T ss_pred             cEECCCCEEeecceeCCccc--ccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCc--CCCCcEEE
Confidence            34555566666666543211  011246899999999999998 56999999999999999874  55555553

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.10  E-value=1.7e-10  Score=88.71  Aligned_cols=103  Identities=21%  Similarity=0.333  Sum_probs=73.2

Q ss_pred             CCceECCCCEECCCcEEec---CeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCCCCCcc
Q 024153           51 KAPVVNKDVFLAPSASIIG---DVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNLAGKVL  118 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~~~~~~  118 (271)
                      .+..+...+.+..+++|.|   ++++|+.|.+..+++|+...         .++.|||+++|++.|++.+          
T Consensus        32 QNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnA----------  101 (184)
T KOG3121|consen   32 QNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNA----------  101 (184)
T ss_pred             ceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeeh----------
Confidence            3455667788999999987   59999999999999998532         4689999999999999985          


Q ss_pred             ceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153          119 PTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                       .+||.++.+|.+++|.. |++.|.|.|-.++++-+.+.+.+.+.++
T Consensus       102 -AqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~  147 (184)
T KOG3121|consen  102 -AQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIG  147 (184)
T ss_pred             -hhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEc
Confidence             67888887776655533 4444444444444444444444444443

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.08  E-value=1.6e-09  Score=76.05  Aligned_cols=54  Identities=28%  Similarity=0.457  Sum_probs=39.5

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCC-----ceEECCCCEECCCCEEe
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-----SISIGSGTNIQDNSLVH  107 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~-----~~~IG~~~~I~~~~~I~  107 (271)
                      .|++++.|+++++|.+++.||+++.|++++.|.+...     .+.||++|.|+.++++.
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~   60 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH   60 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence            5889999999999998999999999999999886421     24444444444444443

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=1.2e-09  Score=99.32  Aligned_cols=100  Identities=24%  Similarity=0.386  Sum_probs=84.6

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEE
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTV  128 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i  128 (271)
                      +...+.|++++.|++++.|++++.||++|.|+.++.|..    ..|.++|.|++++.|.           +++||++|.|
T Consensus       258 i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~----Sii~~~~~i~~~~~i~-----------~sIi~~~~~i  322 (358)
T COG1208         258 IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKN----SIIMDNVVIGHGSYIG-----------DSIIGENCKI  322 (358)
T ss_pred             EeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEe----eEEEcCCEECCCCEEe-----------eeEEcCCcEE
Confidence            445567888888888888888888888888888888874    5899999999999998           6999999999


Q ss_pred             CcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEe
Q 024153          129 GHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV  169 (271)
Q Consensus       129 ~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV  169 (271)
                      ++ .. .   ||| +.+|.++.+.++++++.++++.++.++
T Consensus       323 g~-~~-~---i~d-~~~g~~~~i~~g~~~~~~~~~~~~~~~  357 (358)
T COG1208         323 GA-SL-I---IGD-VVIGINSEILPGVVVGPGSVVESGEIE  357 (358)
T ss_pred             CC-ce-e---ecc-eEecCceEEcCceEeCCCccccCcccc
Confidence            99 22 2   999 999999999999999998888877654

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=8.3e-10  Score=98.00  Aligned_cols=87  Identities=25%  Similarity=0.312  Sum_probs=73.3

Q ss_pred             cEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcE
Q 024153           65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAF  144 (271)
Q Consensus        65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~  144 (271)
                      +.++.++.+|++|.|+.++.|.-    ..||++|.||+.|.|.           ++.|.+++.+|+++.|.+|+||+++.
T Consensus       329 ~l~g~d~iv~~~t~i~~~s~ik~----SviG~nC~Ig~~~~v~-----------nSilm~nV~vg~G~~IensIIg~gA~  393 (433)
T KOG1462|consen  329 ALVGADSIVGDNTQIGENSNIKR----SVIGSNCDIGERVKVA-----------NSILMDNVVVGDGVNIENSIIGMGAQ  393 (433)
T ss_pred             eccchhhccCCCceecccceeee----eeecCCccccCCcEEE-----------eeEeecCcEecCCcceecceecccce
Confidence            55666778888888888888874    5899999999999998           69999999999999999999999999


Q ss_pred             EccCcEEccCcEECCCcEEccCc
Q 024153          145 VGMGATLLDGVYVEKHAMVAAGA  167 (271)
Q Consensus       145 Ig~~~~I~~~v~Ig~~~~Ig~~s  167 (271)
                      ||.++.+.. |.||.+-+|-|..
T Consensus       394 Ig~gs~L~n-C~Ig~~yvVeak~  415 (433)
T KOG1462|consen  394 IGSGSKLKN-CIIGPGYVVEAKG  415 (433)
T ss_pred             ecCCCeeee-eEecCCcEEcccc
Confidence            999999954 6666666655443

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.04  E-value=2.5e-09  Score=79.60  Aligned_cols=92  Identities=22%  Similarity=0.322  Sum_probs=58.1

Q ss_pred             eECCCCEECCCcEEec--CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153           54 VVNKDVFLAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS  131 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~  131 (271)
                      .|++++.|+++++|..  .+.||+++.|++++.|.         +++.|+.++.+.        ..+.+.||+++.|+.+
T Consensus         4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~---------~~~~i~~~~~~~--------~~~~~~Ig~~~~Ig~~   66 (101)
T cd03354           4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIY---------QGVTLGGKGKGG--------GKRHPTIGDNVVIGAG   66 (101)
T ss_pred             EeCCCCEECCCEEECCCCeEEECCCCEECCCCEEc---------CCCEECCCccCC--------cCCCCEECCCcEEcCC
Confidence            3455555555555543  34455555555444433         333444333320        1247899999999999


Q ss_pred             cEEec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153          132 AVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus       132 ~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      +.+.. ++||++|+|++++.|.+.  +.+++++.
T Consensus        67 ~~i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~~   98 (101)
T cd03354          67 AKILGNITIGDNVKIGANAVVTKD--VPANSTVV   98 (101)
T ss_pred             CEEECcCEECCCCEECCCCEECcc--cCCCCEEE
Confidence            98877 999999999999999874  66666554

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.03  E-value=2.4e-09  Score=80.27  Aligned_cols=79  Identities=15%  Similarity=0.270  Sum_probs=67.7

Q ss_pred             CEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcE
Q 024153           77 SSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVY  156 (271)
Q Consensus        77 ~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~  156 (271)
                      +.|++++.|..    ..||++|.|+ ++.|.           ++.|++++.|++++.|.++.|++++.|+.++.+ .++.
T Consensus         2 ~~i~~~~~i~~----s~Ig~~~~I~-~~~I~-----------~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i-~~si   64 (104)
T cd04651           2 PYIGRRGEVKN----SLVSEGCIIS-GGTVE-----------NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI-RRAI   64 (104)
T ss_pred             ceecCCCEEEe----EEECCCCEEc-CeEEE-----------eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEE-EeEE
Confidence            34555565542    5789999998 88887           689999999999999999999999999999999 5799


Q ss_pred             ECCCcEEccCcEecCC
Q 024153          157 VEKHAMVAAGALVRQN  172 (271)
Q Consensus       157 Ig~~~~Ig~~svV~~~  172 (271)
                      ||+++.|++++.+.++
T Consensus        65 ig~~~~Ig~~~~v~~~   80 (104)
T cd04651          65 IDKNVVIPDGVVIGGD   80 (104)
T ss_pred             ECCCCEECCCCEECCC
Confidence            9999999999988876

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.03  E-value=2.7e-09  Score=99.70  Aligned_cols=100  Identities=15%  Similarity=0.359  Sum_probs=70.3

Q ss_pred             CcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC---------------C---
Q 024153           64 SASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD---------------N---  125 (271)
Q Consensus        64 ~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~---------------~---  125 (271)
                      ++.+.+ +.|+++|.|+ ++.|..    ..||++|.|+++|.|..          .+.+|.               +   
T Consensus       310 ~~~i~~-s~I~~~~~I~-~~~I~~----svI~~~~~Ig~~~~I~~----------sii~g~~~~~~~~~~~~~~~~~~~~  373 (436)
T PLN02241        310 DCRITD-SIISHGCFLR-ECKIEH----SVVGLRSRIGEGVEIED----------TVMMGADYYETEEEIASLLAEGKVP  373 (436)
T ss_pred             CCeEEE-eEEcCCcEEc-CeEEEe----eEEcCCCEECCCCEEEE----------eEEECCCccccccccccccccCCcc
Confidence            444544 7788888888 888863    58999999999999874          233342               2   


Q ss_pred             cEECcCcEEeceeeCCCcEEccCcEEcc------CcEECCCcEEccC-cEecCCceeCCCc
Q 024153          126 VTVGHSAVLHGCTVEDEAFVGMGATLLD------GVYVEKHAMVAAG-ALVRQNTKIPCGE  179 (271)
Q Consensus       126 ~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~------~v~Ig~~~~Ig~~-svV~~~~~I~~~~  179 (271)
                      +.|+.++.+.+++|+++|+||.++.|..      ..++|++|.|+.+ ++|++++.|++++
T Consensus       374 ~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  434 (436)
T PLN02241        374 IGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGT  434 (436)
T ss_pred             eEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence            3788888888888999999998888864      3555666666666 3555555555443

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.03  E-value=2.2e-09  Score=97.47  Aligned_cols=106  Identities=24%  Similarity=0.287  Sum_probs=73.6

Q ss_pred             ECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeC
Q 024153           61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVE  140 (271)
Q Consensus        61 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig  140 (271)
                      +.+.+.+.+++.||++|.| .++.|.+.   +.||++|.|+ +++|..          +++||++|.|+ ++.|.+++|+
T Consensus       245 i~~~~~i~~~~~i~~~~~i-~~~~i~~~---~~Ig~~~~I~-~~~i~~----------~~~Ig~~~~i~-~~~i~~s~i~  308 (353)
T TIGR01208       245 VDDESKIRGRVVVGEGAKI-VNSVIRGP---AVIGEDCIIE-NSYIGP----------YTSIGEGVVIR-DAEVEHSIVL  308 (353)
T ss_pred             cCCCCEEcCCEEECCCCEE-eCCEEECC---cEECCCCEEc-CcEECC----------CCEECCCCEEe-eeEEEeeEEc
Confidence            5667788888889999999 78888765   7888888886 445542          67788888776 5777778888


Q ss_pred             CCcEEccCc-EEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceE
Q 024153          141 DEAFVGMGA-TLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARF  188 (271)
Q Consensus       141 ~~~~Ig~~~-~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~  188 (271)
                      +++.|+.++ .+ .++.||+++.|+.+..+..+     ...+.|.++++
T Consensus       309 ~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~~-----~~~~~g~~~~~  351 (353)
T TIGR01208       309 DESVIEGVQARI-VDSVIGKKVRIKGNRRRPGD-----LRLTIGDYSQV  351 (353)
T ss_pred             CCCEEcCCccee-ecCEEcCCCEECCCcccccc-----cceEEcCCcee
Confidence            888887774 44 45677777776666555432     23445665543

Alternate name: dTDP-D-glucose synthase

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.03  E-value=7.6e-09  Score=84.36  Aligned_cols=77  Identities=25%  Similarity=0.365  Sum_probs=55.9

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEec
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR  170 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~  170 (271)
                      ..||++|.|..+++|.+.... .+. ..-+||+++.||+++.| .+++|||++.||+|++|...+        -++++|.
T Consensus        94 a~IGddv~I~~gVTLGgtg~~-~g~-RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdV--------P~~~tvv  163 (194)
T COG1045          94 AVIGDDVTIYHGVTLGGTGKE-SGK-RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDV--------PPNATVV  163 (194)
T ss_pred             eEECCCeEEEcceEecCCCCc-CCC-CCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCC--------CCCceEe
Confidence            567788888888888654332 222 23479999999999966 559999999999999999865        3344444


Q ss_pred             CCceeCCCcEE
Q 024153          171 QNTKIPCGEVW  181 (271)
Q Consensus       171 ~~~~I~~~~vv  181 (271)
                      .   ||+..+-
T Consensus       164 G---vPArii~  171 (194)
T COG1045         164 G---VPARVIG  171 (194)
T ss_pred             c---CcceEec
Confidence            4   6766553

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.02  E-value=3.2e-09  Score=96.49  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=58.8

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC-c
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS-A  132 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~-~  132 (271)
                      .+.+.++|++++.| .++.|+..|.|+++|.|.+    ..|+++|.|+++|.|.. .     ...+++|++++.|+.+ +
T Consensus       250 ~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~----~~i~~~~~Ig~~~~i~~-~-----~i~~s~i~~~~~i~~~~~  318 (353)
T TIGR01208       250 KIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIEN----SYIGPYTSIGEGVVIRD-A-----EVEHSIVLDESVIEGVQA  318 (353)
T ss_pred             EEcCCEEECCCCEE-eCCEEECCcEECCCCEEcC----cEECCCCEECCCCEEee-e-----EEEeeEEcCCCEEcCCcc
Confidence            34444444444444 3333433444444444431    24444455554444431 0     1126889999999888 4


Q ss_pred             EEeceeeCCCcEEccCcEEcc--CcEECCCcEEc
Q 024153          133 VLHGCTVEDEAFVGMGATLLD--GVYVEKHAMVA  164 (271)
Q Consensus       133 ~i~~~~Ig~~~~Ig~~~~I~~--~v~Ig~~~~Ig  164 (271)
                      .+.+++||++|.|+.++.+..  +..+|+++.|+
T Consensus       319 ~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~  352 (353)
T TIGR01208       319 RIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE  352 (353)
T ss_pred             eeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence            888899999999999888864  35677777654

Alternate name: dTDP-D-glucose synthase

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.98  E-value=4.5e-09  Score=86.99  Aligned_cols=114  Identities=20%  Similarity=0.191  Sum_probs=83.4

Q ss_pred             CEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccC-cEEccC
Q 024153           77 SSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG-ATLLDG  154 (271)
Q Consensus        77 ~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~-~~I~~~  154 (271)
                      +.+.+...+.-....+.+|++|.++.++.+..        ....+||+++.+++++.+.. ...++...-... ......
T Consensus        53 ~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~~--------~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~  124 (190)
T COG0110          53 AVIRPPVRIDLGEKNLTIGDLCFIGVNVVILV--------GEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGP  124 (190)
T ss_pred             cEECCCEEEecCCcceEECCeeEEcCCcEEEe--------cCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCC
Confidence            44444433332224588999999999999753        23678999999999888854 233333322222 444556


Q ss_pred             cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHH
Q 024153          155 VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAF  199 (271)
Q Consensus       155 v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~  199 (271)
                      ++||++|+||++++|.++++|++++++ |..|.+.+++|++.+..
T Consensus       125 v~IG~~vwIG~~a~IlpGV~IG~gavi-gagsVVtkdvp~~~iv~  168 (190)
T COG0110         125 VTIGEDVWIGAGAVILPGVTIGEGAVI-GAGSVVTKDVPPYGIVA  168 (190)
T ss_pred             eEECCCeEEcCccEECCCEEECCCcEE-eeCCEEeCccCCCeEEe
Confidence            999999999999999999999999998 67799999999887644

>PLN02357 serine acetyltransferase

Probab=98.97  E-value=1.2e-08  Score=91.34  Aligned_cols=68  Identities=21%  Similarity=0.315  Sum_probs=47.4

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                      ++||++|.|..+|+|.+.... . ..+.+.||++|.||.++.| .+++||+++.||++++|..+  |.+++++
T Consensus       253 avIGdnV~I~~gVtIGg~g~~-~-g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~d--VP~~~~v  321 (360)
T PLN02357        253 AVVGNNVSILHNVTLGGTGKQ-S-GDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKD--VPPRTTA  321 (360)
T ss_pred             CEECCCCEEeCCceecCcccc-C-CccCceeCCCeEECCceEEECCeEECCCCEECCCCEECcc--cCCCcEE
Confidence            345566666666666542111 1 1235899999999999887 56999999999999999875  4455443

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.94  E-value=7.2e-09  Score=96.63  Aligned_cols=94  Identities=18%  Similarity=0.379  Sum_probs=70.9

Q ss_pred             CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC-------------------CcEECc
Q 024153           70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD-------------------NVTVGH  130 (271)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~-------------------~~~i~~  130 (271)
                      ++.||++|.| +++.|..    +.||++|.|+++|.|.           ++.|+.                   ++.|++
T Consensus       308 ~~~ig~~~~i-~~~~i~~----svi~~~~~Ig~~~~i~-----------~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~  371 (429)
T PRK02862        308 ESIIAEGCII-KNCSIHH----SVLGIRSRIESGCTIE-----------DTLVMGADFYESSEEREELRKEGKPPLGIGE  371 (429)
T ss_pred             eCEECCCCEE-CCcEEEE----EEEeCCcEECCCCEEE-----------eeEEecCcccccccccccccccCCcccEECC
Confidence            4788888888 7787762    6999999999999998           466654                   688999


Q ss_pred             CcEEeceeeCCCcEEccCcEEccCcEECC------CcEEccC-cEecCCceeCCCc
Q 024153          131 SAVLHGCTVEDEAFVGMGATLLDGVYVEK------HAMVAAG-ALVRQNTKIPCGE  179 (271)
Q Consensus       131 ~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~------~~~Ig~~-svV~~~~~I~~~~  179 (271)
                      +|.|.+++|+++|.||.++.|.++..+..      +++|+.+ ++|++++.+++++
T Consensus       372 ~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (429)
T PRK02862        372 GTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGT  427 (429)
T ss_pred             CCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCC
Confidence            99999999999999999999865544333      5555555 4455555555544

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.92  E-value=9.4e-09  Score=96.07  Aligned_cols=100  Identities=24%  Similarity=0.410  Sum_probs=61.0

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECC---------------C---CEECCCCEEecCCcCCCC
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGS---------------G---TNIQDNSLVHVAKSNLAG  115 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~---------------~---~~I~~~~~I~~~~~~~~~  115 (271)
                      .|+++|.|+ ++.|. ++.||++|.|+++|.|...   +.+|.               +   +.|+++|.+.        
T Consensus       317 ~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~s---ii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~--------  383 (436)
T PLN02241        317 IISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDT---VMMGADYYETEEEIASLLAEGKVPIGIGENTKIR--------  383 (436)
T ss_pred             EEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEe---EEECCCccccccccccccccCCcceEECCCCEEc--------
Confidence            355555555 55553 4567777777777776644   55563               2   2677777765        


Q ss_pred             CccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccC-cEECCCcEEccCcEe
Q 024153          116 KVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG-VYVEKHAMVAAGALV  169 (271)
Q Consensus       116 ~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~-v~Ig~~~~Ig~~svV  169 (271)
                         +++|++++.|++++.+.+ .-+.+...+|.++.+..+ |+||+++.|+++|+|
T Consensus       384 ---~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  436 (436)
T PLN02241        384 ---NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI  436 (436)
T ss_pred             ---ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence               567777777777777743 344444444555555555 577777777776653

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.90  E-value=2.2e-08  Score=79.54  Aligned_cols=105  Identities=25%  Similarity=0.275  Sum_probs=70.6

Q ss_pred             ceECCCCEECC-CcEEec-CeEECCCCEEccCcEEecC-CCc--------eEECCCCEECCCCEEecCCcCCCCCccceE
Q 024153           53 PVVNKDVFLAP-SASIIG-DVQVGRGSSIWYGCVLRGD-VNS--------ISIGSGTNIQDNSLVHVAKSNLAGKVLPTI  121 (271)
Q Consensus        53 ~~i~~~~~I~~-~~~i~~-~v~IG~~~~I~~~~~I~~~-~~~--------~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~  121 (271)
                      ..||++++|++ .+.+.. .+.||++|.|++++.|... ...        ..++++...++ .     .........+++
T Consensus         2 ~~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~-~-----~~~~~~~~~~~~   75 (145)
T cd03349           2 ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDD-A-----KFDDWPSKGDVI   75 (145)
T ss_pred             EEEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccc-c-----ccccccccCCcE
Confidence            46888888988 555554 7999999999999998743 111        01111111000 0     000111235899


Q ss_pred             EcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEcc
Q 024153          122 IGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAA  165 (271)
Q Consensus       122 Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~  165 (271)
                      ||++|+|+.++.+ .+++||++|.||++++|.++  +.+++++++
T Consensus        76 Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G  118 (145)
T cd03349          76 IGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGG  118 (145)
T ss_pred             ECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEe
Confidence            9999999999988 56999999999999999885  567666653

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.82  E-value=4.6e-08  Score=89.75  Aligned_cols=83  Identities=13%  Similarity=0.200  Sum_probs=59.9

Q ss_pred             EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEE
Q 024153           72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATL  151 (271)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I  151 (271)
                      .+...+.|++++.|. +   +.||++|.|+.  .+.           ++.||++|.|+++|.|.+++|+++|.|+.++.|
T Consensus       278 ~~~~~~~i~~~~~i~-~---~~Ig~~~~I~~--~v~-----------~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i  340 (380)
T PRK05293        278 PNLPPQYIAENAKVK-N---SLVVEGCVVYG--TVE-----------HSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVI  340 (380)
T ss_pred             cCCCCCEECCCCEEe-c---CEECCCCEEcc--eec-----------ceEEcCCCEECCCCEEECCEEeCCCEECCCeEE
Confidence            333445555555553 2   45777777752  232           689999999999999999999999999999887


Q ss_pred             ccCcEECCCcEEccCcEecCC
Q 024153          152 LDGVYVEKHAMVAAGALVRQN  172 (271)
Q Consensus       152 ~~~v~Ig~~~~Ig~~svV~~~  172 (271)
                      .. ++|++++.|+.++.+.++
T Consensus       341 ~~-~ii~~~~~i~~~~~i~~~  360 (380)
T PRK05293        341 ER-AIIGENAVIGDGVIIGGG  360 (380)
T ss_pred             eE-EEECCCCEECCCCEEcCC
Confidence            44 777777777777666553

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.6e-08  Score=87.22  Aligned_cols=70  Identities=26%  Similarity=0.349  Sum_probs=40.4

Q ss_pred             CceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153           52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS  131 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~  131 (271)
                      .+.|++++.++|++.|++++.||+++.|++|+.|+.    ..|=++|.|.+|+++.           +++||-.+.||..
T Consensus       288 dVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~----sIIl~d~ei~enavVl-----------~sIigw~s~iGrW  352 (407)
T KOG1460|consen  288 DVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRE----SIILDDAEIEENAVVL-----------HSIIGWKSSIGRW  352 (407)
T ss_pred             eeEEcCcceeCCccccCCCceecCCceecCCceeee----eeeccCcEeeccceEE-----------eeeecccccccce
Confidence            355566666666666666666666666666666653    3555666666665554           3555555555555


Q ss_pred             cEEec
Q 024153          132 AVLHG  136 (271)
Q Consensus       132 ~~i~~  136 (271)
                      +.+.+
T Consensus       353 aRVe~  357 (407)
T KOG1460|consen  353 ARVEG  357 (407)
T ss_pred             eeecc
Confidence            54433

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.79  E-value=9.8e-09  Score=79.64  Aligned_cols=114  Identities=17%  Similarity=0.219  Sum_probs=93.0

Q ss_pred             hcCCCceECCCCEECCCcEEe---cCeEECCCCEEccCcEEec--------C--CCceEECCCCEECCCCEEecCCcCCC
Q 024153           48 IFDKAPVVNKDVFLAPSASII---GDVQVGRGSSIWYGCVLRG--------D--VNSISIGSGTNIQDNSLVHVAKSNLA  114 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~---~~v~IG~~~~I~~~~~I~~--------~--~~~~~IG~~~~I~~~~~I~~~~~~~~  114 (271)
                      -+...+.|+++|.+||.+.+.   |++.||+|+.|.+.++|..        +  ...+.||.+....-+|...       
T Consensus        22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~-------   94 (190)
T KOG4042|consen   22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSS-------   94 (190)
T ss_pred             ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhh-------
Confidence            355678899999999999885   6899999999999999875        1  2358899998888887776       


Q ss_pred             CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153          115 GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN  172 (271)
Q Consensus       115 ~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~  172 (271)
                          -..+|++..|+..+.+.. |++-++|.+|+.|.+..+-.+.++++|-+..-+..-
T Consensus        95 ----A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R~  149 (190)
T KOG4042|consen   95 ----AKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSRT  149 (190)
T ss_pred             ----hhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccce
Confidence                367899999988888754 888888999999999888888888888766665543

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.75  E-value=7.6e-08  Score=87.65  Aligned_cols=50  Identities=16%  Similarity=0.454  Sum_probs=28.8

Q ss_pred             ceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEe
Q 024153          119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV  169 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV  169 (271)
                      ++.||++|.|+.+|.|.+++|++++.|+.++.| .+++||+++.|++++.+
T Consensus       310 ~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i  359 (361)
T TIGR02091       310 HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVI  359 (361)
T ss_pred             ccEECCCCEECCCCEEeeeEEeCCCEECCCCEE-eeeEECCCCEECCCCEe
Confidence            355566666666666666666666666666655 34555555555555544

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.72  E-value=7.3e-08  Score=86.74  Aligned_cols=96  Identities=23%  Similarity=0.424  Sum_probs=78.8

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCc
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV  126 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~  126 (271)
                      .++.+...|.......|++.+..+..+ .++.|..||+|.|...+..|+.++.|++++.|.           ++.|..+|
T Consensus       268 ~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~-----------~svim~~~  335 (393)
T COG0448         268 NLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIE-----------NSVIMPDV  335 (393)
T ss_pred             cccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEE-----------eeEEeCCc
Confidence            345555556666777888888776664 677777777777766678999999999999998           69999999


Q ss_pred             EECcCcEEeceeeCCCcEEccCcEEccC
Q 024153          127 TVGHSAVLHGCTVEDEAFVGMGATLLDG  154 (271)
Q Consensus       127 ~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~  154 (271)
                      .||.+|.|..++|.++|.|+.|+.|...
T Consensus       336 ~IG~~~~l~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         336 EIGEGAVLRRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             EECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence            9999999999999999999999888776

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.2e-07  Score=81.92  Aligned_cols=74  Identities=22%  Similarity=0.319  Sum_probs=55.6

Q ss_pred             ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153           53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA  132 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~  132 (271)
                      +.|-.+++|||++.+.+.++||.|+               .||.++.||+++.|.           .++|-+++.|.+|+
T Consensus       283 a~IigdVyIhPsakvhptAkiGPNV---------------SIga~vrvg~GvRl~-----------~sIIl~d~ei~ena  336 (407)
T KOG1460|consen  283 AEIIGDVYIHPSAKVHPTAKIGPNV---------------SIGANVRVGPGVRLR-----------ESIILDDAEIEENA  336 (407)
T ss_pred             ceEEeeeEEcCcceeCCccccCCCc---------------eecCCceecCCceee-----------eeeeccCcEeeccc
Confidence            3455555555555555555555544               566777788888887           68999999999999


Q ss_pred             EEeceeeCCCcEEccCcEEc
Q 024153          133 VLHGCTVEDEAFVGMGATLL  152 (271)
Q Consensus       133 ~i~~~~Ig~~~~Ig~~~~I~  152 (271)
                      ++-+++||-++.||..+.|.
T Consensus       337 vVl~sIigw~s~iGrWaRVe  356 (407)
T KOG1460|consen  337 VVLHSIIGWKSSIGRWARVE  356 (407)
T ss_pred             eEEeeeecccccccceeeec
Confidence            99999999999999888764

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=4.7e-08  Score=87.02  Aligned_cols=78  Identities=24%  Similarity=0.405  Sum_probs=69.0

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ  171 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~  171 (271)
                      ..+|++|.|++++.|.           .+.||++|.||+.+.+.++.|-+++.||.++.| ++|.||.++.||++|.+. 
T Consensus       335 ~iv~~~t~i~~~s~ik-----------~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~-  401 (433)
T KOG1462|consen  335 SIVGDNTQIGENSNIK-----------RSVIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLK-  401 (433)
T ss_pred             hccCCCceecccceee-----------eeeecCCccccCCcEEEeeEeecCcEecCCcce-ecceecccceecCCCeee-
Confidence            6778888888888887           689999999999999999999999999999999 569999999999999985 


Q ss_pred             CceeCCCcEEe
Q 024153          172 NTKIPCGEVWG  182 (271)
Q Consensus       172 ~~~I~~~~vv~  182 (271)
                      +|.|+++-++-
T Consensus       402 nC~Ig~~yvVe  412 (433)
T KOG1462|consen  402 NCIIGPGYVVE  412 (433)
T ss_pred             eeEecCCcEEc
Confidence            57888887763

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.64  E-value=2e-07  Score=87.00  Aligned_cols=66  Identities=20%  Similarity=0.416  Sum_probs=38.3

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECC------------------CCEECCCCEEecCCcCCCC
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGS------------------GTNIQDNSLVHVAKSNLAG  115 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~------------------~~~I~~~~~I~~~~~~~~~  115 (271)
                      .|+++|.| +++.|. ++.||++|.|++++.|..+   +..|+                  +|.|+++|.|.        
T Consensus       310 ~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~s---vi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~--------  376 (429)
T PRK02862        310 IIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDT---LVMGADFYESSEEREELRKEGKPPLGIGEGTTIK--------  376 (429)
T ss_pred             EECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEee---EEecCcccccccccccccccCCcccEECCCCEEE--------
Confidence            45555555 444453 4566666666666666643   33342                  56666666665        


Q ss_pred             CccceEEcCCcEECcCcEEe
Q 024153          116 KVLPTIIGDNVTVGHSAVLH  135 (271)
Q Consensus       116 ~~~~~~Ig~~~~i~~~~~i~  135 (271)
                         ++.|+++|.|++++.+.
T Consensus       377 ---~~ii~~~~~i~~~~~~~  393 (429)
T PRK02862        377 ---RAIIDKNARIGNNVRIV  393 (429)
T ss_pred             ---EEEECCCcEECCCcEEe
Confidence               46666666666665553

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.64  E-value=2e-07  Score=86.48  Aligned_cols=69  Identities=25%  Similarity=0.362  Sum_probs=42.7

Q ss_pred             cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccC
Q 024153           69 GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMG  148 (271)
Q Consensus        69 ~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~  148 (271)
                      .++.||++|.|+ ++.|.+    +.||++|.|+++|.|.           +++|+++|.|++++.|.+++|+++|.|+++
T Consensus       314 ~~~~ig~~~~I~-~~~i~~----svIg~~~~I~~~~~i~-----------~sii~~~~~i~~~~~i~~~ii~~~~~i~~~  377 (407)
T PRK00844        314 QDSLVSAGSIIS-GATVRN----SVLSPNVVVESGAEVE-----------DSVLMDGVRIGRGAVVRRAILDKNVVVPPG  377 (407)
T ss_pred             EeCEEcCCCEEC-CeeeEc----CEECCCCEECCCCEEe-----------eeEECCCCEECCCCEEEeeEECCCCEECCC
Confidence            345566666665 555552    4666666666666665           456666666666666666666666666666


Q ss_pred             cEEcc
Q 024153          149 ATLLD  153 (271)
Q Consensus       149 ~~I~~  153 (271)
                      +.|..
T Consensus       378 ~~i~~  382 (407)
T PRK00844        378 ATIGV  382 (407)
T ss_pred             CEECC
Confidence            55544

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.62  E-value=1.5e-07  Score=86.04  Aligned_cols=66  Identities=23%  Similarity=0.469  Sum_probs=46.7

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ  171 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~  171 (271)
                      +.||++|.|+  ..+.           ++.|+++|.|+.+|.|.+++|+++|.|+.++.+.. +.||++++|++++.+..
T Consensus       290 ~~Ig~~~~i~--~~v~-----------~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~-~ii~~~~~v~~~~~~~~  355 (369)
T TIGR02092       290 SLVANGCIIE--GKVE-----------NSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN-VIIDKDVVIEPNVKIAG  355 (369)
T ss_pred             eEEcCCCEEe--eEEe-----------CCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE-EEECCCCEECCCCEeCC
Confidence            4566666665  2343           57788888888888888888888888888877743 77777777777766643

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.60  E-value=3.1e-07  Score=83.62  Aligned_cols=82  Identities=21%  Similarity=0.324  Sum_probs=64.8

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV  133 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~  133 (271)
                      .+.+.++|++.+.+ +++.||++|.|+++ .+. +   +.||++|.|+++|.|.           ++.|++++.|++++.
T Consensus       279 ~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~-~---s~i~~~~~I~~~~~i~-----------~sii~~~~~v~~~~~  341 (361)
T TIGR02091       279 FLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVS-H---SVLGIRVRIGSGSTVE-----------DSVIMGDVGIGRGAV  341 (361)
T ss_pred             CCCCceEecCCCEE-ECCEECCCCEECCC-EEE-c---cEECCCCEECCCCEEe-----------eeEEeCCCEECCCCE
Confidence            34556677777644 56778888888765 554 2   6899999999999997           689999999999999


Q ss_pred             EeceeeCCCcEEccCcEEc
Q 024153          134 LHGCTVEDEAFVGMGATLL  152 (271)
Q Consensus       134 i~~~~Ig~~~~Ig~~~~I~  152 (271)
                      +++++||+++.|+.++.|.
T Consensus       342 l~~~ivg~~~~i~~~~~i~  360 (361)
T TIGR02091       342 IRNAIIDKNVRIGEGVVIG  360 (361)
T ss_pred             EeeeEECCCCEECCCCEeC
Confidence            9988888888888887764

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.53  E-value=4.6e-07  Score=84.48  Aligned_cols=65  Identities=25%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcE
Q 024153           71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGAT  150 (271)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~  150 (271)
                      +.||++|.| .++.|..    +.||++|.|+++|.|.           +++|+++|.|++++.|.+++|+++|.|++++.
T Consensus       328 s~i~~~~~i-~~~~i~~----svi~~~~~I~~~~~i~-----------~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~  391 (425)
T PRK00725        328 SLVSGGCII-SGAVVRR----SVLFSRVRVNSFSNVE-----------DSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMV  391 (425)
T ss_pred             CEEcCCcEE-cCccccC----CEECCCCEECCCCEEe-----------eeEEcCCCEECCCCEEeeEEECCCCEECCCCE
Confidence            444444444 3444331    3555555555555554           35555555555555555555554444444433


Q ss_pred             E
Q 024153          151 L  151 (271)
Q Consensus       151 I  151 (271)
                      |
T Consensus       392 i  392 (425)
T PRK00725        392 I  392 (425)
T ss_pred             E
Confidence            3

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.52  E-value=2e-07  Score=81.64  Aligned_cols=99  Identities=21%  Similarity=0.265  Sum_probs=69.3

Q ss_pred             EECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceee
Q 024153           60 FLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTV  139 (271)
Q Consensus        60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~I  139 (271)
                      ...|++.+.+++.+..-..++.+|.|..+   +.||.+|.|++++.|.           +|+|.....+...+.+..+.+
T Consensus       254 r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~---vvIG~r~~i~~gV~l~-----------~s~il~~~~~~~~s~i~s~iv  319 (371)
T KOG1322|consen  254 RLLPGSKIVGNVLVDSIASIGENCSIGPN---VVIGPRVRIEDGVRLQ-----------DSTILGADYYETHSEISSSIV  319 (371)
T ss_pred             cccCCccccccEeeccccccCCccEECCC---ceECCCcEecCceEEE-----------eeEEEccceechhHHHHhhhc
Confidence            44444444444444444444444444433   4677888888888887           688888888888888888888


Q ss_pred             CCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153          140 EDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN  172 (271)
Q Consensus       140 g~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~  172 (271)
                      |-++.||.++.|...++||++++|.....|..+
T Consensus       320 g~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g  352 (371)
T KOG1322|consen  320 GWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG  352 (371)
T ss_pred             cccccccCceEEecccEeccceEEecccccccc
Confidence            888888888888888888888888765555443

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.51  E-value=4.3e-07  Score=84.70  Aligned_cols=69  Identities=13%  Similarity=0.279  Sum_probs=60.1

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ  171 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~  171 (271)
                      +.||++|.| ++|.|.           +++||++|.|+.++.|.+|+|+++|.|+.+|.| .+++|+++|.|++++++..
T Consensus       328 s~i~~~~~i-~~~~i~-----------~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~~  394 (425)
T PRK00725        328 SLVSGGCII-SGAVVR-----------RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIGE  394 (425)
T ss_pred             CEEcCCcEE-cCcccc-----------CCEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEECC
Confidence            578888888 677775           689999999999999999999999999999999 5588999999998888876


Q ss_pred             Cc
Q 024153          172 NT  173 (271)
Q Consensus       172 ~~  173 (271)
                      ++
T Consensus       395 ~~  396 (425)
T PRK00725        395 DP  396 (425)
T ss_pred             CC
Confidence            53

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.46  E-value=8.4e-07  Score=82.28  Aligned_cols=68  Identities=22%  Similarity=0.368  Sum_probs=59.9

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ  171 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~  171 (271)
                      +.||++|.|+ ++.|.           ++.||++|.|++++.|.+++|+++|.|+.+|.|.. ++|++++.|++++++..
T Consensus       316 ~~ig~~~~I~-~~~i~-----------~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        316 SLVSAGSIIS-GATVR-----------NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR-AILDKNVVVPPGATIGV  382 (407)
T ss_pred             CEEcCCCEEC-CeeeE-----------cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe-eEECCCCEECCCCEECC
Confidence            5788888887 88886           58999999999999999999999999999999954 89999999999988876


Q ss_pred             C
Q 024153          172 N  172 (271)
Q Consensus       172 ~  172 (271)
                      +
T Consensus       383 ~  383 (407)
T PRK00844        383 D  383 (407)
T ss_pred             C
Confidence            4

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.43  E-value=1.4e-06  Score=79.71  Aligned_cols=79  Identities=14%  Similarity=0.295  Sum_probs=60.2

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec
Q 024153           57 KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG  136 (271)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~  136 (271)
                      +.++|++++.| +++.||++|.|+  ..+.    ++.||++|.|+++|.|.           ++.|++++.|++++.+.+
T Consensus       277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~----~s~i~~~~~I~~~~~i~-----------~sii~~~~~I~~~~~i~~  338 (369)
T TIGR02092       277 PPTYYAENSKV-ENSLVANGCIIE--GKVE----NSILSRGVHVGKDALIK-----------NCIIMQRTVIGEGAHLEN  338 (369)
T ss_pred             CCcEEcCCCEE-EEeEEcCCCEEe--eEEe----CCEECCCCEECCCCEEE-----------eeEEeCCCEECCCCEEEE
Confidence            44556665555 445566666554  2233    36899999999999997           689999999999999999


Q ss_pred             eeeCCCcEEccCcEEcc
Q 024153          137 CTVEDEAFVGMGATLLD  153 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~  153 (271)
                      ++||+++.|++++.+.+
T Consensus       339 ~ii~~~~~v~~~~~~~~  355 (369)
T TIGR02092       339 VIIDKDVVIEPNVKIAG  355 (369)
T ss_pred             EEECCCCEECCCCEeCC
Confidence            99999998888888744

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.42  E-value=3.8e-07  Score=53.75  Aligned_cols=33  Identities=24%  Similarity=0.634  Sum_probs=21.2

Q ss_pred             eeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153          137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ  171 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~  171 (271)
                      ++||++|+|++++.|  +++||++|+|+++++|.+
T Consensus         2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~   34 (34)
T PF14602_consen    2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA   34 (34)
T ss_dssp             EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred             eEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence            567788888888887  588888888888877753

...

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.40  E-value=6.6e-07  Score=74.27  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHH
Q 024153          155 VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAF  199 (271)
Q Consensus       155 v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~  199 (271)
                      =+||||++||+++.|.++++|++++++ |..+.+++|+|+.....
T Consensus       201 P~Igd~vliGaGvtILgnV~IGegavI-aAGsvV~kDVP~~~~Av  244 (269)
T KOG4750|consen  201 PKIGDNVLIGAGVTILGNVTIGEGAVI-AAGSVVLKDVPPNTLAV  244 (269)
T ss_pred             CcccCCeEEccccEEeCCeeECCCcEE-eccceEEeccCCCceec
Confidence            389999999999999999999999998 56699999999988765

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=98.24  E-value=1.2e-06  Score=52.21  Aligned_cols=35  Identities=17%  Similarity=0.453  Sum_probs=27.9

Q ss_pred             ceeeCCCcEEccCcEEccCcEECCCcEEccCcEec
Q 024153          136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR  170 (271)
Q Consensus       136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~  170 (271)
                      ++.||++|+|++++.|.++++||+++.|+++++|.
T Consensus         1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~   35 (36)
T PF00132_consen    1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG   35 (36)
T ss_dssp             TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred             CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence            36788888888888888888888888888888774

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.18  E-value=2.8e-06  Score=50.05  Aligned_cols=32  Identities=31%  Similarity=0.651  Sum_probs=17.8

Q ss_pred             eEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153          120 TIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL  152 (271)
Q Consensus       120 ~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~  152 (271)
                      +.||++|+|++++.+ +++|||+|.|++|++|.
T Consensus         2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I~   33 (34)
T PF14602_consen    2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVIT   33 (34)
T ss_dssp             EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEEE
T ss_pred             eEECCCEEECccccc-CCEEcCCCEECCCCEEc
Confidence            456666666666666 56777777777776653

...

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=97.90  E-value=9.8e-05  Score=66.85  Aligned_cols=53  Identities=17%  Similarity=0.427  Sum_probs=45.2

Q ss_pred             ceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153          119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN  172 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~  172 (271)
                      +++|+.++.|+.++.|.+|+|-.+|.||.+|.|.. +.|..+|.|+.|+++..+
T Consensus       311 nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~-aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         311 NSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRR-AIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             eeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence            78999999999999999999999999999998854 777777777777777655

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.87  E-value=0.00025  Score=59.38  Aligned_cols=94  Identities=13%  Similarity=0.184  Sum_probs=43.3

Q ss_pred             ECCCCEECCC-cEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153           55 VNKDVFLAPS-ASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV  133 (271)
Q Consensus        55 i~~~~~I~~~-~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~  133 (271)
                      +-+++++... ....+++.||+++.+..+          .+|+...+++++.|.+.--     ..++.|+-+|.+..|+.
T Consensus         6 vPp~Tr~e~~~ivv~gdViIG~nS~l~~~----------V~g~~iivge~v~i~Gdiv-----a~diridmw~kv~gNV~   70 (277)
T COG4801           6 VPPNTRVEEAIIVVKGDVIIGKNSMLKYG----------VVGEEIIVGERVRIYGDIV-----AKDIRIDMWCKVTGNVI   70 (277)
T ss_pred             cCCCCceeeeeEEEeccEEEcccceeeee----------eeeeeEEeccCcEEeeeEE-----ecceeeeeeeEeeccEE
Confidence            4455554333 344556666666655433          4556666666666663110     12344444444443333


Q ss_pred             Eec-eeeCCCcEEccCcEEccCcEECCCcEE
Q 024153          134 LHG-CTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus       134 i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                      ..+ ..||+.+.|....++.+.-.||+.+.|
T Consensus        71 ve~dayiGE~~sI~gkl~v~gdLdig~dV~I  101 (277)
T COG4801          71 VENDAYIGEFSSIKGKLTVIGDLDIGADVII  101 (277)
T ss_pred             EcCceEEeccceeeeeEEEecccccccceEE
Confidence            322 334444444444444444444444444

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=97.86  E-value=2.7e-05  Score=68.51  Aligned_cols=13  Identities=46%  Similarity=0.613  Sum_probs=5.9

Q ss_pred             eEEcCCcEECcCc
Q 024153          120 TIIGDNVTVGHSA  132 (271)
Q Consensus       120 ~~Ig~~~~i~~~~  132 (271)
                      +.+|.++.||.++
T Consensus       317 ~ivg~~~~IG~~~  329 (371)
T KOG1322|consen  317 SIVGWNVPIGIWA  329 (371)
T ss_pred             hhccccccccCce
Confidence            4444444444444

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.78  E-value=2.7e-05  Score=46.26  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=15.6

Q ss_pred             eEECCCCEEccCcEEecCCCceEECCCCEECCCCEE
Q 024153           71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV  106 (271)
Q Consensus        71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I  106 (271)
                      +.||+++.|++++.|.++   +.||++|.|++++.|
T Consensus         2 ~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGG---VVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEEETTEEEETTEEEETT---EEE-TTEEEETTEEE
T ss_pred             CEEcCCCEECCCcEecCC---CEECCCCEEcCCCEE
Confidence            344445555555554433   455555555555544

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.30  E-value=0.0015  Score=54.79  Aligned_cols=60  Identities=13%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             EcCCcEECcCcEEec------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153          122 IGDNVTVGHSAVLHG------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW  181 (271)
Q Consensus       122 Ig~~~~i~~~~~i~~------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv  181 (271)
                      +|+.+.++.++.+.|      |.|+-+|.+..|+.+.++..||+++.|...-+|..+..+++...+
T Consensus        36 ~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~I  101 (277)
T COG4801          36 VGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVII  101 (277)
T ss_pred             eeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEE
Confidence            344444444444433      455555555555555555555555555555555555555554443

>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F

Probab=95.45  E-value=0.0031  Score=45.04  Aligned_cols=29  Identities=31%  Similarity=0.529  Sum_probs=22.5

Q ss_pred             eCCCcEEeccCceEc---------cCCCHHHHHHHHHH
Q 024153          175 IPCGEVWGGNPARFL---------RKLTEEEMAFISQS  203 (271)
Q Consensus       175 I~~~~vv~G~pa~~~---------~~~~~~~~~~~~~~  203 (271)
                      |||++++.|+||++.         +.+++.++..++++
T Consensus         2 VpPf~~~~G~~a~~~GlN~vGLrR~Gfs~~~i~~l~~a   39 (83)
T PF13720_consen    2 VPPFMLVAGNPARIRGLNLVGLRRRGFSKEEISALRRA   39 (83)
T ss_dssp             B-TTEEEETTTTEEEEE-HHHHHHTTS-HHHHHHHHHH
T ss_pred             CCCeEEecCCccEEeeeeHHHHHHcCCCHHHHHHHHHH
Confidence            899999999999886         56888887777666

...

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=90.10  E-value=0.73  Score=42.98  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=24.9

Q ss_pred             ceEEcCCcEECcCcEEeceeeCCCcEEccCcEEcc
Q 024153          119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLD  153 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~  153 (271)
                      ++.+...+.++++++|..|.|+.++.||.+|+|.+
T Consensus       284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG  318 (414)
T PF07959_consen  284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG  318 (414)
T ss_pred             EeEecCCceECCCCEEEeeecCCCCEECCCCEEEC
Confidence            46677777777777777777777777777777644

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=86.70  E-value=1.7  Score=40.52  Aligned_cols=41  Identities=12%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCc
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEA  143 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~  143 (271)
                      ..|..++.++++++|.           ++.++.++.||++|+|.|+.+.+..
T Consensus       285 Sil~~~~~vg~~svIe-----------~s~l~~~~~IG~~cIisGv~~~~~~  325 (414)
T PF07959_consen  285 SILEGGVSVGPGSVIE-----------HSHLGGPWSIGSNCIISGVDINSWS  325 (414)
T ss_pred             eEecCCceECCCCEEE-----------eeecCCCCEECCCCEEECCcccccc
Confidence            5778888888888887           6888889999999999888776654

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins

Probab=85.30  E-value=6.9  Score=28.53  Aligned_cols=45  Identities=20%  Similarity=0.251  Sum_probs=26.6

Q ss_pred             CCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEe
Q 024153           58 DVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVH  107 (271)
Q Consensus        58 ~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~  107 (271)
                      .+.|.+++.+.|++....+..+...  +.++   +.......|+.++.|.
T Consensus         2 ~~~I~~~~~i~G~i~~~~~v~i~G~--v~G~---i~~~g~v~i~~~~~v~   46 (101)
T PF04519_consen    2 TTIIGKGTKIEGDISSDGDVRIDGR--VEGN---IKAEGKVKIGGNGEVK   46 (101)
T ss_pred             cEEECCCCEEEEEEEECcEEEEEEE--EEEE---EEEceEEEEcCCCEEE
Confidence            3567777777777777666666433  4444   4443355555555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
3ixc_A	191	Crystal Structure Of Hexapeptide Transferase Family		9e-41
3r1w_A	189	Crystal Structure Of A Carbonic Anhydrase From A Cr		3e-32
3tio_A	183	Crystal Structures Of Yrda From Escherichia Coli, A		1e-31
3r3r_A	187	Structure Of The Yrda Ferripyochelin Binding Protei		1e-30
1xhd_A	173	X-Ray Crystal Structure Of Putative Acetyltransfera		2e-27
3vnp_A	183	Crystal Structure Of Hypothetical Protein (Gk2848)		3e-27
1v3w_A	173	Structure Of Ferripyochelin Binding Protein From Py		1e-26
3ou9_A	213	Crystal Structure Of Gamma-Carbonic Anhydrase W19f		2e-08
3otz_A	213	Crystal Structure Of Gamma-Carbonic Anhydrase W19a		2e-08
1qrf_A	213	A Closer Look At The Active Site Of Gamma-Carbonic		3e-08
1thj_A	214	Carbonic Anhydrase From Methanosarcina Length = 214		3e-08
1qrl_A	214	A Closer Look At The Active Site Of Gamma-Carbonic		3e-08
3otm_A	212	Crystal Structures Of Wild-Type Gamma-Carbonic Anhy		3e-08
1qq0_A	247	Cobalt Substituted Carbonic Anhydrase From Methanos		3e-08
3oup_A	213	Crystal Structure Of The Gamma-Carbonic Anhydrase W		4e-08
3ow5_A	213	Crystal Structure Of The Y200a Mutant Of Gamma Carb		1e-07
3kwc_A	229	Oxidized, Active Structure Of The Beta-carboxysomal		4e-07
3kwd_A	213	Inactive Truncation Of The Beta-Carboxysomal Gamma-		8e-07
3ect_A	195	Crystal Structure Of The Hexapeptide-repeat Contain		6e-04
3fs8_A	273	Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Did		7e-04

>pdb|3IXC|A Chain A, Crystal Structure Of Hexapeptide Transferase Family Protein From Anaplasma Phagocytophilum Length = 191

Iteration: 1
 Score =  163 bits (413), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 115/161 (71%), Gaps = 5/161 (3%)
Query: 52  APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKS 111
           +P V+   F+A +A IIGDV +G+ +SIWYG VLRGDV+ I +G GTNIQDN++VH    
Sbjct: 33  SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHT--D 90
Query: 112 NLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
           ++ G    T+IG  VT+GHS +LH CT+ + AFVGMG+ ++D   +E+ +M+AAG+L+ +
Sbjct: 91  SMHGD---TVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTR 147
Query: 172 NTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR 212
              +  GE+W G PA+FLR +TEEE+ ++ +SA NY  L+R
Sbjct: 148 GKIVKSGELWAGRPAKFLRMMTEEEILYLQKSAENYIALSR 188

>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil Degrading Psychrophilic Library Length = 189

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 110/180 (61%), Gaps = 4/180 (2%)
Query: 39  LSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGT 98
           L+  RT   I   +P + + VF+  S+ IIGDV++G   S+W   V+RGD++ I IG+ T
Sbjct: 9   LTSVRTYQGI---SPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGART 65
Query: 99  NIQDNSLVHVAK-SNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYV 157
           ++QD S++H+   S+      P IIGD+VT+GH A+LHGCT+ +   +GM + ++DG  V
Sbjct: 66  SVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIV 125
Query: 158 EKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAE 217
           E   +VAAGA V     +  G V+ G PA+ +R +TE+E +F +  A NY  L   H AE
Sbjct: 126 EDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSFFTYGAGNYVRLKDKHLAE 185

>pdb|3TIO|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A Homologous Protein Of Gamma-Class Carbonic Anhydrase, Show Possible Allosteric Conformations Length = 183

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 50  DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA 109
           D  P + + V +  S+ +IGDV++     IW   V+RGDV+ + IG+ TNIQD S++HV 
Sbjct: 9   DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVT 68
Query: 110 -KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGAL 168
            KS+      P  IG++VTVGH  +LHGCT+ +   VGMG+ LLDG  VE   M+ AG+L
Sbjct: 69  HKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSL 128
Query: 169 VRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY 207
           V QN ++  G ++ G+P + +R L++EE A +  SA NY
Sbjct: 129 VPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 167

>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From Salmonella Enterica Length = 187

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 43  RTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQD 102
           R   N+F   P + + V +  S+ +IGDV++     IW   V+RGDVN ++IG+ TNIQD
Sbjct: 9   RPYKNLF---PGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQD 65
Query: 103 NSLVHV---AKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEK 159
            S++HV   + SN  G   P IIG++VTVGH  +LHGCT+ +   VGMG+ +LDG  +E 
Sbjct: 66  GSVLHVTHKSSSNPHGN--PLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIED 123
Query: 160 HAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY 207
             M+ AG+LV Q+ ++  G ++ G+P + +R L++ E + +  SA NY
Sbjct: 124 DVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSGLQYSANNY 171

>pdb|1XHD|A Chain A, X-Ray Crystal Structure Of Putative Acetyltransferase, Product Of Bc4754 Gene [bacillus Cereus] Length = 173

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 50  DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA 109
           +K P +    F+A   +I GDV VG  SSIW+  V+RGDV+   IG   N+QD   +H +
Sbjct: 10  EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQS 69
Query: 110 KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169
                    P I+ D+VTVGH  +LH C ++ +A +G G+ +LDG  + + A + AG+LV
Sbjct: 70  PQ------YPLILEDDVTVGHQVILHSCHIKKDALIGXGSIILDGAEIGEGAFIGAGSLV 123
Query: 170 RQNTKIPCGEVWGGNPARFLRKLTEEE 196
            Q  KIP   +  G PA+ +R+LT E+
Sbjct: 124 SQGKKIPPNTLAFGRPAKVIRELTAED 150

>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From Geobacillus Kaustophilus Length = 183

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 6/147 (4%)
Query: 51  KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAK 110
           K P +    F+A   +I GDV +G  +SIW+  V+RGDV    IG+  NIQDNS++H + 
Sbjct: 9   KTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNSILHQSP 68
Query: 111 SNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
           +N      P II D VTVGH  +LH   V   A +GMG+ +LD   + + A + AG+LV 
Sbjct: 69  NN------PLIIEDGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVP 122
Query: 171 QNTKIPCGEVWGGNPARFLRKLTEEEM 197
              KIP   +  G PA+ +R+LTE+++
Sbjct: 123 PGKKIPPNTLALGRPAKVVRELTEDDI 149

>pdb|1V3W|A Chain A, Structure Of Ferripyochelin Binding Protein From Pyrococcus Horikoshii Ot3 Length = 173

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 45  LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNS 104
           +  I  K P ++   F+  +A +IGDV +   +S+W   VLRGD+  I +G  +N+QDN 
Sbjct: 3   IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNV 62
Query: 105 LVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVA 164
            +H +         PT IG+ VT+GH+A++HG  V +   +G+ + +LDG  +  H ++ 
Sbjct: 63  SIHTSHG------YPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIG 116
Query: 165 AGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVH 214
           AGA+V  N +IP   +  G P + +R+LTEEE+ +  ++A  Y  LA  H
Sbjct: 117 AGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKH 166

>pdb|3OU9|A Chain A, Crystal Structure Of Gamma-Carbonic Anhydrase W19f Mutant From Methanosarcina Thermophila Length = 213

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
           T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD
Sbjct: 17  TPFNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
           A +      +   +E  +  A G  +     IP G V      A  L ++T++     + 
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SAINYSNLARVHAAENAK 220
            A+ Y N   VH AE  K
Sbjct: 196 EAVVYVN---VHLAEGYK 210

>pdb|3OTZ|A Chain A, Crystal Structure Of Gamma-Carbonic Anhydrase W19a Mutant From Metanosarcina Thermophila Length = 213

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
           T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD
Sbjct: 17  TPANPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
           A +      +   +E  +  A G  +     IP G V      A  L ++T++     + 
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SAINYSNLARVHAAENAK 220
            A+ Y N   VH AE  K
Sbjct: 196 EAVVYVN---VHLAEGYK 210

>pdb|1QRF|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic Anhydrases: High Resolution Crystallographic Studies Of The Carbonic Anhydrase From Methanosarcina Thermophila Length = 213

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
           T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD
Sbjct: 17  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
           A +      +   +E  +  A G  +     IP G V      A  L ++T++     + 
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SAINYSNLARVHAAENAK 220
            A+ Y N   VH AE  K
Sbjct: 196 EAVVYVN---VHLAEGYK 210

>pdb|1THJ|A Chain A, Carbonic Anhydrase From Methanosarcina Length = 214

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
           T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD
Sbjct: 18  TPWNPEPSAPVIDPTAYIDPEASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 77
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 78  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 137
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
           A +      +   +E  +  A G  +     IP G V      A  L ++T++     + 
Sbjct: 138 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 196
Query: 203 SAINYSNLARVHAAENAK 220
            A+ Y N   VH AE  K
Sbjct: 197 EAVVYVN---VHLAEGYK 211

>pdb|1QRL|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic Anhydrases: High Resolution Crystallographic Studies Of The Carbonic Anhydrase From Methanosarcina Thermophila Length = 214

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
           T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD
Sbjct: 18  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 77
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 78  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 137
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
           A +      +   +E  +  A G  +     IP G V      A  L ++T++     + 
Sbjct: 138 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 196
Query: 203 SAINYSNLARVHAAENAK 220
            A+ Y N   VH AE  K
Sbjct: 197 EAVVYVN---VHLAEGYK 211

>pdb|3OTM|A Chain A, Crystal Structures Of Wild-Type Gamma-Carbonic Anhydrase From Methanosarcina Thermophila Length = 212

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
           T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD
Sbjct: 16  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 75
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 76  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 135
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
           A +      +   +E  +  A G  +     IP G V      A  L ++T++     + 
Sbjct: 136 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 194
Query: 203 SAINYSNLARVHAAENAK 220
            A+ Y N   VH AE  K
Sbjct: 195 EAVVYVN---VHLAEGYK 209

>pdb|1QQ0|A Chain A, Cobalt Substituted Carbonic Anhydrase From Methanosarcina Thermophila Length = 247

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
           T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD
Sbjct: 51  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 110
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 111 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 170
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
           A +      +   +E  +  A G  +     IP G V      A  L ++T++     + 
Sbjct: 171 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 229
Query: 203 SAINYSNLARVHAAENAK 220
            A+ Y N   VH AE  K
Sbjct: 230 EAVVYVN---VHLAEGYK 244

>pdb|3OUP|A Chain A, Crystal Structure Of The Gamma-Carbonic Anhydrase W19n Mutant From Methanosarcina Thermophila Length = 213

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
           T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD
Sbjct: 17  TPNNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
           A +      +   +E  +  A G  +     IP G V      A  L ++T++     + 
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SAINYSNLARVHAAENAK 220
            A+ Y N   VH AE  K
Sbjct: 196 EAVVYVN---VHLAEGYK 210

>pdb|3OW5|A Chain A, Crystal Structure Of The Y200a Mutant Of Gamma Carbonic Anhydrase From Methanosarcina Thermophila Length = 213

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
           T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD
Sbjct: 17  TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
             ++H  ++              + GK     IG+NV++ H + +HG   V D+ F+GM 
Sbjct: 77  GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL 152
           A + 
Sbjct: 137 AFVF 140

>pdb|3KWC|A Chain A, Oxidized, Active Structure Of The Beta-carboxysomal Gamma-carbonic Anhydrase, Ccmm Length = 229

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 53  PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISIGSGTNIQDNSLVHVAKS 111
           P +    ++   +++IGDV++     I  G  +R D  +   IGS TNIQD  ++H  + 
Sbjct: 40  PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQ 99
Query: 112 NLA----GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAG 166
                  G+     IGDNV++ H A++HG   + D  F+G  +T+ +       A V AG
Sbjct: 100 GRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-------ARVGAG 152
Query: 167 ALVR-----QNTKIPCGE-------VWGGNPARFLRKLTEEEMAFISQ-SAINYSNLARV 213
            +V      Q+ +IP G+       +     A  L  + E ++ F      IN + L+  
Sbjct: 153 CVVMMHVLIQDVEIPPGKYVPSGMVITTQQQADRLPNVEESDIHFAQHVVGINEALLSGY 212
Query: 214 HAAENAKSFDEIEFE 228
             AEN      I  E
Sbjct: 213 QCAENIACIAPIRNE 227

>pdb|3KWD|A Chain A, Inactive Truncation Of The Beta-Carboxysomal Gamma-Carbonic Anhydrase, Ccmm, Form 1 Length = 213

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 53  PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISIGSGTNIQDNSLVHVAKS 111
           P +    ++   +++IGDV++     I  G  +R D  +   IGS TNIQD  ++H  + 
Sbjct: 40  PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQ 99
Query: 112 NLA----GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAG 166
                  G+     IGDNV++ H A++HG   + D  F+G  +T+ +       A V AG
Sbjct: 100 GRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-------ARVGAG 152
Query: 167 ALVR-----QNTKIPCGE 179
            +V      Q+ +IP G+
Sbjct: 153 CVVMMHVLIQDVEIPPGK 170

>pdb|3ECT|A Chain A, Crystal Structure Of The Hexapeptide-repeat Containing- Acetyltransferase Vca0836 From Vibrio Cholerae Length = 195

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 95  GSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCT---------------- 138
           G    I D++ ++     L G   P  IGD+V +G S   +  +                
Sbjct: 74  GKTIRIGDHTFINXNVVXLDGA--PITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICK 131
Query: 139 ---VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE 194
              +ED+ ++G    +  GV +   ++VAA ++V Q+  +P   + GG PAR LR L +
Sbjct: 132 PIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD--VPPDTLVGGTPARILRSLKD 188

>pdb|3FS8|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D- Glucose N-Acetyl Transferase From Thermoanaerobacterium Thermosaccharolyticum In Complex With Acetyl-Coa Length = 273

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 30/183 (16%)
Query: 25  LGCR-LQGNY---YFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIW 80
           +G R + G Y   ++ +++++   L        ++ ++  +     I GD  +G      
Sbjct: 47  IGARSILGEYLVDFYNDRINKKHPL--------IIGENALIRTENVIYGDTIIGDNFQTG 98
Query: 81  YGCVLRGDV---NSISIGSGTNIQDN----SLVHVAKSNLAGK---------VLPTIIGD 124
           +   +R +    N++ IG+ ++IQ +    + V++  +   G+         + P ++  
Sbjct: 99  HKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLT 158
Query: 125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGN 184
           N     S  L G T+E  A +   + +L G+++ + A+V AGA+V ++  +P   V  GN
Sbjct: 159 NDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKD--VPKETVVVGN 216
Query: 185 PAR 187
           PAR
Sbjct: 217 PAR 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	3e-95
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	3e-94
3r3r_A	187	Ferripyochelin binding protein; structural genomic	7e-93
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	4e-89
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	2e-81
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	7e-78
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	7e-72
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	3e-27
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	3e-24
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	1e-21
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	3e-20
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	4e-08
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	3e-07
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	4e-19
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	7e-17
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	8e-17
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	5e-13
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	2e-12
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	7e-12
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	2e-11
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	5e-11
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	9e-10
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	2e-09
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	2e-09
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	4e-09
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	4e-09
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	5e-09
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	6e-09
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	6e-08
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	7e-08
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	8e-08
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	1e-04
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	1e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	9e-05
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	2e-07
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	2e-07
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	2e-07
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	5e-07
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	5e-07
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	7e-07
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	1e-06
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	1e-06
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	2e-06
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	3e-05
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	4e-05
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	6e-04
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	5e-05
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	5e-04
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	8e-05
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	8e-05
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	7e-04
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	2e-04
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	4e-04

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} Length = 189

 Score =  277 bits (710), Expect = 3e-95
 Identities = 69/178 (38%), Positives = 107/178 (60%), Gaps = 1/178 (0%)

Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDN 103
           ++      +P + + VF+  S+ IIGDV++G   S+W   V+RGD++ I IG+ T++QD 
Sbjct: 11  SVRTYQGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDG 70

Query: 104 SLVHVA-KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAM 162
           S++H+   S+      P IIGD+VT+GH A+LHGCT+ +   +GM + ++DG  VE   +
Sbjct: 71  SVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVI 130

Query: 163 VAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAK 220
           VAAGA V     +  G V+ G PA+ +R +TE+E +F +  A NY  L   H AE   
Sbjct: 131 VAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSFFTYGAGNYVRLKDKHLAEGYD 188

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} Length = 191

 Score =  274 bits (704), Expect = 3e-94
 Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 11/199 (5%)

Query: 16  RETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGR 75
                 +  L  + QG    +E L  +         +P V+   F+A +A IIGDV +G+
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMREVLVPYA------GVSPSVDSTAFIAGNARIIGDVCIGK 56

Query: 76  GSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH 135
            +SIWYG VLRGDV+ I +G GTNIQDN++VH    +       T+IG  VT+GHS +LH
Sbjct: 57  NASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHG-----DTVIGKFVTIGHSCILH 111

Query: 136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEE 195
            CT+ + AFVGMG+ ++D   +E+ +M+AAG+L+ +   +  GE+W G PA+FLR +TEE
Sbjct: 112 ACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTEE 171

Query: 196 EMAFISQSAINYSNLARVH 214
           E+ ++ +SA NY  L+R +
Sbjct: 172 EILYLQKSAENYIALSRGY 190

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} Length = 187

 Score =  271 bits (694), Expect = 7e-93
 Identities = 67/178 (37%), Positives = 108/178 (60%), Gaps = 1/178 (0%)

Query: 44  TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDN 103
           TL    +  P + + V +  S+ +IGDV++     IW   V+RGDVN ++IG+ TNIQD 
Sbjct: 7   TLRPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDG 66

Query: 104 SLVHVA-KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAM 162
           S++HV  KS+      P IIG++VTVGH  +LHGCT+ +   VGMG+ +LDG  +E   M
Sbjct: 67  SVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVM 126

Query: 163 VAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAK 220
           + AG+LV Q+ ++  G ++ G+P + +R L++ E + +  SA NY      + +++  
Sbjct: 127 IGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSGLQYSANNYVKWKDDYLSQDNH 184

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A Length = 247

 Score =  264 bits (675), Expect = 4e-89
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 32/241 (13%)

Query: 4   LGKAIYSVGFWIRETGQALDRLGCRLQGNYY------FQEQLSRHR----TLMNIFDKAP 53
             K I+++         AL   GC  +G           ++ S  R    T  N    AP
Sbjct: 3   FNKQIFTILI--LSLSLALAGSGCISEGAEDNVAQEITVDEFSNIRENPVTPWNPEPSAP 60

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQDNSLVHVAKS- 111
           V++   ++ P AS+IG+V +G    +     +R D    I +G  +N+QD  ++H  ++ 
Sbjct: 61  VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETI 120

Query: 112 ------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVE 158
                        + GK     IG+NV++ H + +HG   V D+ F+GM A +       
Sbjct: 121 NEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGN 180

Query: 159 ----KHAMVAAGALVRQNTKIPCGEVWGGN-PARFLRKLTEEEMAFISQSAINYSNLARV 213
               +    A G  +     IP G V      A  L ++T++     +  A+ Y N+   
Sbjct: 181 NCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHLA 240

Query: 214 H 214
            
Sbjct: 241 E 241

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A Length = 173

 Score =  241 bits (618), Expect = 2e-81
 Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 6/173 (3%)

Query: 45  LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNS 104
           +    +K P +    F+A   +I GDV VG  SSIW+  V+RGDV+   IG   N+QD  
Sbjct: 5   IYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQC 64

Query: 105 LVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVA 164
            +H +         P I+ D+VTVGH  +LH C ++ +A +GMG+ +LDG  + + A + 
Sbjct: 65  TLHQSPQ------YPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIG 118

Query: 165 AGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAE 217
           AG+LV Q  KIP   +  G PA+ +R+LT E+   + +    Y    + + + 
Sbjct: 119 AGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIRTQYVEKGQYYKSL 171

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A Length = 173

 Score =  232 bits (594), Expect = 7e-78
 Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 9/175 (5%)

Query: 46  MNIF---DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQD 102
           M I+    K P ++   F+  +A +IGDV +   +S+W   VLRGD+  I +G  +N+QD
Sbjct: 1   MAIYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQD 60

Query: 103 NSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAM 162
           N  +H +         PT IG+ VT+GH+A++HG  V +   +G+ + +LDG  +  H +
Sbjct: 61  NVSIHTSHGY------PTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVI 114

Query: 163 VAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAE 217
           + AGA+V  N +IP   +  G P + +R+LTEEE+ +  ++A  Y  LA  H   
Sbjct: 115 IGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKHIKG 169

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score =  218 bits (558), Expect = 7e-72
 Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 13/201 (6%)

Query: 24  RLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGC 83
             G   +G++   +  +   T  +     P +    ++   +++IGDV++     I  G 
Sbjct: 11  SSGLVPRGSHMAVQSYAAPPTPWSRDLAEPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGT 70

Query: 84  VLRGDVNS-ISIGSGTNIQDNSLVHVAKSNLA----GKVLPTIIGDNVTVGHSAVLHG-C 137
            +R D  +   IGS TNIQD  ++H  +        G+     IGDNV++ H A++HG  
Sbjct: 71  SIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPA 130

Query: 138 TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ-----NTKIPCGEVW-GGNPARFLRK 191
            + D  F+G  +T+ +   V    +V    L++         +P G V      A  L  
Sbjct: 131 YIGDGCFIGFRSTVFNAR-VGAGCVVMMHVLIQDVEIPPGKYVPSGMVITTQQQADRLPN 189

Query: 192 LTEEEMAFISQSAINYSNLAR 212
           + E ++ F          L  
Sbjct: 190 VEESDIHFAQHVVGINEALLS 210

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score =  103 bits (259), Expect = 3e-27
 Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 32  NYYFQEQLSRHRTLM-----NIFDKAPVVN-------KDVFLAPSASIIGDVQVGRGSSI 79
           ++Y QE+L +   L       I  KA + N        +V +     + G V +G  S I
Sbjct: 20  SFYSQEELKKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHI 79

Query: 80  WYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTV 139
                L G    I +    NI   ++V+ A  + +G  L   +G  +   +  V  G  +
Sbjct: 80  AAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNAL---MGPTIPNQYKNVKTGKVI 136

Query: 140 -EDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEE 195
            +    +G  + +   V + +   V A ++V+++  +    ++ G P R ++    +
Sbjct: 137 LKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES--LDDWYIYVGVPVRKIKARKRK 191

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 95.9 bits (239), Expect = 3e-24
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 16/133 (12%)

Query: 60  FLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLP 119
            + PSA +   V++G G ++  G  +  D     IG    I   ++V             
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSW---IGDLAIINTGAVVDH----------D 147

Query: 120 TIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178
             +G    +G ++ L G  +V + AF+G+GA ++ GV +    +V AG +V ++  +P  
Sbjct: 148 CRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDS 205

Query: 179 EVWGGNPARFLRK 191
            +  G PA+    
Sbjct: 206 VLAIGVPAKIKGD 218

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 93.1 bits (231), Expect = 1e-21
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 22/136 (16%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL 113
                  ++  A I GD  +G    +     L        +G G+N Q+N  +  ++   
Sbjct: 275 GSASGASVSGYAVIKGDTVIGENVLVSQRAYLDN----AWMGKGSNAQENCYIINSR--- 327

Query: 114 AGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDG----VYVEKHAMVAAGALV 169
                   +  N    H   +    + D  F G  + L       + +    +V    ++
Sbjct: 328 --------LERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTII 379

Query: 170 RQNT--KIPCGE-VWG 182
                 +IP G  VWG
Sbjct: 380 DLEEPLEIPAGHLVWG 395

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 86.7 bits (215), Expect = 3e-20
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 34/165 (20%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---NSISIGSGTNIQDN------- 103
           ++ ++  +     I GD  +G      +   +R +    N++ IG+ ++IQ +       
Sbjct: 72  IIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYV 131

Query: 104 ---SLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-----------HGCTVEDEAFVGMGA 149
              S V V +         +II D V +    VL            G T+E  A +   +
Sbjct: 132 NIHSNVFVGEK--------SIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARS 183

Query: 150 TLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE 194
            +L G+++ + A+V AGA+V ++  +P   V  GNPAR +  + +
Sbjct: 184 VVLPGIHINEDALVGAGAVVTKD--VPKETVVVGNPAREICSIRK 226

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 28/122 (22%)

Query: 63  PSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTII 122
            SA I   V +G   +I              I  G  I+DN  +             + I
Sbjct: 7   KSAIIKEGVIIGENVTIEDNVY---------IDYGCIIRDNVHIK---KG-------SFI 47

Query: 123 GDNVTVGHSAV---------LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT 173
           G    +G   V          H   + + A +     +     +  +        +R+NT
Sbjct: 48  GARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENT 107

Query: 174 KI 175
           KI
Sbjct: 108 KI 109

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 12/129 (9%)

Query: 48  IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVH 107
           I  +  ++ ++V +  +  I     +     I  G  + G   SI +G       N  ++
Sbjct: 10  IIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFI-GA-RSI-LGEYLVDFYNDRIN 66

Query: 108 VAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAAG 166
                      P IIG+N  +    V++    + D    G   T+ +   +  +  +   
Sbjct: 67  KKH--------PLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTL 118

Query: 167 ALVRQNTKI 175
           + ++ +  I
Sbjct: 119 SDIQHHVYI 127

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 52  APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV-HVAK 110
             +++K   ++PSA +    +   G  I    V+        I  G  +  +S++ H   
Sbjct: 75  VNLIHKSALISPSAIV----EENAGILIMPYVVINAKAK---IEKGVILNTSSVIEHEC- 126

Query: 111 SNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169
                     +IG+   V   A   G   +    F+G+ + +L  + +   +++  GA +
Sbjct: 127 ----------VIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATL 176

Query: 170 RQNTKIPCGEVWGGNPARFL 189
            +N       V+ G PA+ +
Sbjct: 177 VKN--QDEKGVFVGVPAKRM 194

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 76.8 bits (189), Expect = 7e-17
 Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 27/178 (15%)

Query: 28  RLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRG 87
             +    +  +  R  + + + D          + P A I   V++G  + I     +  
Sbjct: 64  NSKYIVDYVVENDRRNSAIPMLDL---KGIKARIEPGAIIRDHVEIGDNAVIMMNATINI 120

Query: 88  DVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGC---------T 138
                 IG G+ I  N+++        G+     +G N  VG  AVL G           
Sbjct: 121 GA---VIGEGSMIDMNAVL-------GGRA---TVGKNCHVGAGAVLAGVIEPPSAKPVI 167

Query: 139 VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE 196
           VED+  +G    +L+GV V K A+VAAGA+V ++  +P   V  G PAR ++++ E+ 
Sbjct: 168 VEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED--VPPYTVVAGTPARVIKEIDEKT 223

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 75.4 bits (185), Expect = 8e-17
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 23/160 (14%)

Query: 57  KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------------NSISIGSGTNIQ 101
               + P+A +    ++G  S IW+   + G                 N + IG+   IQ
Sbjct: 2   HMATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQ 61

Query: 102 DNSL----VHVAKSNLAG--KVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGV 155
           +N      V +      G   V   +      +   +      V   A +G   T++ G 
Sbjct: 62  NNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGA 121

Query: 156 YVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEE 195
            + ++A V AGA+V ++  +P   +  G PAR +  ++  
Sbjct: 122 TIGRYAFVGAGAVVNKD--VPDFALVVGVPARQIGWMSRH 159

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} Length = 212

 Score = 65.3 bits (159), Expect = 5e-13
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 28/184 (15%)

Query: 56  NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGT-----NIQDNSLVHVAK 110
           +   +L P    +  + +G   SI  G V     N               QDN     A+
Sbjct: 44  DCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADAR 103

Query: 111 SNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
                    TIIG +V                 ++G  A ++ GV +   A++A+ ++V 
Sbjct: 104 DGFTRS-GDTIIGHDV-----------------WIGTEAMIMPGVKIGHGAIIASRSVVT 145

Query: 171 QNTKIPCGEVWGGNPARFLRKLTEEEMAFISQ-SAINYSNLARVHAAENAKSFDEIEFEK 229
           ++  +   EV G NPA+ ++    +    I+    + + N       E+ +S    + E 
Sbjct: 146 KD--VAPYEVVGSNPAKHIKFRFSDVE--IAMLLEMAWWNWPESWLKESMQSLCSSDIEG 201

Query: 230 LLRK 233
           L   
Sbjct: 202 LYLN 205

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} Length = 219

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 32/185 (17%)

Query: 58  DVFLAPSASIIGDVQVGRGSSIWYGCVL-------RGDVNSISIGSGTNIQDNSLVHVAK 110
           D  L     I   + +GR  SI  G          R D ++          +  +  +  
Sbjct: 53  DQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKD 112

Query: 111 SNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
             L G      IG++V                 ++G   T++ GV +   A++AA A+V 
Sbjct: 113 LPLKG---DIEIGNDV-----------------WIGRDVTIMPGVKIGDGAIIAAEAVVT 152

Query: 171 QNTKIPCGEVWGGNPARFLRKLTEEEMAFISQ-SAINYSNLARVHAAENAKSFDEIEFEK 229
           +N  +    + GGNP +F+RK   + +  I +  A+ + NL      EN       + E 
Sbjct: 153 KN--VAPYSIVGGNPLKFIRKRFSDGV--IEEWLALQWWNLDMKIINENLPFIINGDIEM 208

Query: 230 LLRKK 234
           L RK+
Sbjct: 209 LKRKR 213

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* Length = 212

 Score = 62.3 bits (151), Expect = 7e-12
 Identities = 31/193 (16%), Positives = 55/193 (28%), Gaps = 27/193 (13%)

Query: 47  NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGT-----NIQ 101
             +      +   +L P    +  + +G   SI  G       N             +  
Sbjct: 33  GYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFM 92

Query: 102 DNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHA 161
                     N       T+IG  V                 ++G  A  + GV V   A
Sbjct: 93  HEEPAFAGAVNGYQPAGDTLIGHEV-----------------WIGTEAMFMPGVRVGHGA 135

Query: 162 MVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQ-SAINYSNLARVHAAENAK 220
           ++ + ALV  +  +    + GGNPAR +RK   +    I     + + +           
Sbjct: 136 IIGSRALVTGD--VEPYAIVGGNPARTIRKRFSDGD--IQNLLEMAWWDWPLADIEAAMP 191

Query: 221 SFDEIEFEKLLRK 233
                +   L + 
Sbjct: 192 LLCTGDIPALYQH 204

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} Length = 252

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 39/182 (21%)

Query: 32  NYYFQEQLSRHRTLMNIF---DKAPVVNKDVFLAPSASIIGD----VQVGRGSSIWYGCV 84
           N    E     R L  IF   +    ++K+  +     I+      V +GR ++I  G  
Sbjct: 62  NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGD--IVATKGSKVIIGRRTTIGAGFE 119

Query: 85  LRGDVNSISIGSGTNIQDN---------SLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH 135
           +  D  +++IG    I  +          +  +            II   V         
Sbjct: 120 VVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYV--------- 170

Query: 136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IPCGEVWGGNPARFLRKLTE 194
                   +VG   +++ GV V   +++  G++V   TK +P      GNPA+ +++   
Sbjct: 171 --------WVGRNVSIMKGVSVGSGSVIGYGSIV---TKDVPSMCAAAGNPAKIIKRNII 219

Query: 195 EE 196
             
Sbjct: 220 WA 221

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209

 Score = 59.9 bits (145), Expect = 5e-11
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 20/158 (12%)

Query: 57  KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSI----------------SIGSGTNI 100
              F+ P    + +V+VG  S          D   +                SIG G  I
Sbjct: 16  SVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTI 75

Query: 101 QDNSLVHV--AKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVE 158
             N   H     +                +    +     + ++ ++G    ++ GV + 
Sbjct: 76  IMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIG 135

Query: 159 KHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE 196
             A+VAA ++V ++  I    + GGNPA  +++  +++
Sbjct: 136 DGAIVAANSVVVKD--IAPYMLAGGNPANEIKQRFDQD 171

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* Length = 203

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 40/138 (28%)

Query: 73  VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV---TVG 129
           +GR     +   +  D  +++IG      DN                 +I  NV     G
Sbjct: 78  IGRNFYANFNLTIV-DDYTVTIG------DN----------------VLIAPNVTLSVTG 114

Query: 130 H--------SAVLHGC--TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IPCG 178
           H        +  ++    T+ +  ++G    +  GV +  ++++ AG++V   TK IP  
Sbjct: 115 HPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIV---TKDIPPN 171

Query: 179 EVWGGNPARFLRKLTEEE 196
            V  G P R +R++ + +
Sbjct: 172 VVAAGVPCRVIREINDRD 189

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} PDB: 3ect_A* Length = 195

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 34/137 (24%)

Query: 71  VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHV--------AKSNLAGKV--LPT 120
           +++G  + I    V+  D   I+IG    I  +              +   A +    P 
Sbjct: 77  IRIGDHTFINMNVVML-DGAPITIGDHVLIGPS--TQFYTASHSLDYRRRQAWETICKPI 133

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IPCGE 179
           +I D+V                 ++G    +  GV +   ++VAA ++V    + +P   
Sbjct: 134 VIEDDV-----------------WIGGNVVINQGVTIGARSVVAANSVV---NQDVPPDT 173

Query: 180 VWGGNPARFLRKLTEEE 196
           + GG PAR LR L +  
Sbjct: 174 LVGGTPARILRSLKDPA 190

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* Length = 199

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 34/137 (24%)

Query: 71  VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN--------LAGKV--LPT 120
           V++G+   +   C    D   I+IG    I  N       +           G     P 
Sbjct: 75  VKLGKNVYVNTNCYFM-DGGQITIGDNVFIGPN--CGFYTATHPLNFHHRNEGFEKAGPI 131

Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IPCGE 179
            IG N                  + G    +L GV + + +++ AG++V   TK IP   
Sbjct: 132 HIGSNT-----------------WFGGHVAVLPGVTIGEGSVIGAGSVV---TKDIPPHS 171

Query: 180 VWGGNPARFLRKLTEEE 196
           +  GNP + +RK+  + 
Sbjct: 172 LAVGNPCKVVRKIDNDL 188

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} Length = 188

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 30/133 (22%)

Query: 71  VQVGRGSSIWYGCVLRGDVNSISIGS----GTNIQDNSLVH--VAKSNLAGKV--LPTII 122
           + VG      Y C+   DV  I IG       N+Q  +  H   A+   +G     P  I
Sbjct: 77  IHVGENFFANYDCIFL-DVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKI 135

Query: 123 GDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IPCGEVW 181
           GDNV                 ++G G  +  G+ +  + ++ AG++V   TK IP   V 
Sbjct: 136 GDNV-----------------WIGGGVIITPGITIGDNVVIGAGSVV---TKDIPPNTVA 175

Query: 182 GGNPARFLRKLTE 194
            GNP R ++K+ E
Sbjct: 176 VGNPCRVIKKIEE 188

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} PDB: 3igj_A* Length = 190

 Score = 54.0 bits (131), Expect = 4e-09
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 40/138 (28%)

Query: 71  VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV---T 127
           + VG+     + CV+  DV  + IG      D+                 +    V   T
Sbjct: 79  IHVGKSFFANFNCVIL-DVCEVRIG------DH----------------CMFAPGVHIYT 115

Query: 128 VGH--------SAVLHGC--TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IP 176
             H        S   +G    + +  +VG GA +  GV +  +A++A+GA+V   TK +P
Sbjct: 116 ATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVV---TKDVP 172

Query: 177 CGEVWGGNPARFLRKLTE 194
              V GGNPA+ ++ + E
Sbjct: 173 NNVVVGGNPAKVIKTIEE 190

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 48/171 (28%)

Query: 57  KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV----NSI-----SIGSGTNIQDNS--- 104
               +  +  I G V +   + I  G  + G V     S       +   T + + +   
Sbjct: 231 NLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIG 290

Query: 105 -LVHVAKSNL-AGKVLP-------TIIGDNVTVGHSAVL--------------------- 134
             V V +S +  G  +P       ++I ++V  G   ++                     
Sbjct: 291 ASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISS 350

Query: 135 ----HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW 181
                G  +      G+  T+L GV +  +A +  GA+V ++  +  GE +
Sbjct: 351 GRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD--VGYGEFF 399

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* Length = 215

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 32/135 (23%)

Query: 73  VGRGSSIWYGCVLRGDVNSISIGSGTNIQDN---------SLVHVAKSNLAGKVLPTIIG 123
             + +       +  +   ISIG    +             +  +            IIG
Sbjct: 83  QAKTTMGNGEITIA-EKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIG 141

Query: 124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IP-CGEVW 181
           ++V                 ++G   T+L GV +  + +V +  ++    K       V 
Sbjct: 142 NHV-----------------WLGRNVTILKGVCIPNNVVVGSHTVL---YKSFKEPNCVI 181

Query: 182 GGNPARFLRKLTEEE 196
            G+PA+ +++     
Sbjct: 182 AGSPAKIVKENIVWG 196

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 Length = 182

 Score = 50.6 bits (122), Expect = 6e-08
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 30/131 (22%)

Query: 71  VQVGRGSSIWYGCVLRGDVNSISIGS----GTNIQDNSLVH--VAKSNLAGKV--LPTII 122
           + +G      + CV+  DV  I IG        +   +  H     +  +G     P  I
Sbjct: 73  IFLGNNFFANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTI 131

Query: 123 GDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IPCGEVW 181
           G+NV                 ++G  A +  GV +  + +VA+GA+V   TK +P   V 
Sbjct: 132 GNNV-----------------WIGGRAVINPGVTIGDNVVVASGAVV---TKDVPDNVVV 171

Query: 182 GGNPARFLRKL 192
           GGNPAR ++KL
Sbjct: 172 GGNPARIIKKL 182

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A Length = 185

 Score = 50.2 bits (121), Expect = 7e-08
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 40/136 (29%)

Query: 71  VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV---T 127
           + VG    + +  V+  DV  + IG      D+                  IG  V   T
Sbjct: 75  IHVGENFFMNFDGVIL-DVCEVRIG------DH----------------CFIGPGVHIYT 111

Query: 128 VGH--------SAVLHGC--TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-IP 176
             H        S + +G    +    ++G  A +  GV +  +A++A+GA+V   TK +P
Sbjct: 112 ATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVV---TKDVP 168

Query: 177 CGEVWGGNPARFLRKL 192
              V GGNPA+ ++ L
Sbjct: 169 ANAVVGGNPAKVIKWL 184

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 51.7 bits (125), Expect = 8e-08
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 31/115 (26%)

Query: 67  IIGDVQVGRGSSIWYGCVLRGDV---NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG 123
           + G++  GR  +I    ++ G V   + + IG+G  +++                  +IG
Sbjct: 265 LRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKN-----------------CVIG 307

Query: 124 DNVTVGHSAVLHGCTVEDEAFVG------MGATLLDGV----YVE-KHAMVAAGA 167
           D+  +    VL    ++    VG       GA L +G     +VE K A +  G+
Sbjct: 308 DDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGS 362

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 53/165 (32%)

Query: 57  KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGK 116
           +D+ +  +  I G V +G    I  GCVL+   N + IG  + I   +++  A+ +    
Sbjct: 273 RDITIDTNVIIEGHVILGDRVRIGTGCVLK---NCV-IGDDSEISPYTVLEDARLDANCT 328

Query: 117 VLP-------TIIGDNVTVG------------HSAVLH---------------GC----- 137
           V P         + +   VG             S   H               G      
Sbjct: 329 VGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITC 388

Query: 138 ----------TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
                      + D+ FVG    L+  V V   A + AG  V ++
Sbjct: 389 NYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRD 433

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 31/115 (26%)

Query: 67  IIGDVQVGRGSSIWYGCVLRGDV---NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG 123
           + G ++ G+   I    ++ G+V   + + IG+G  +++                  +IG
Sbjct: 262 LRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKN-----------------VVIG 304

Query: 124 DNVTVGHSAVLHGCTVEDEAFVG------MGATLLDGV----YVE-KHAMVAAGA 167
           ++V +   +VL    V ++A +G       GA L        +VE K + V  G+
Sbjct: 305 NDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGS 359

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 53/165 (32%)

Query: 57  KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGK 116
           KDV +  +  I G+V++G    I  GCVL+   N + IG+   I+  S++  +       
Sbjct: 270 KDVEIDVNVIIEGNVKLGDRVKIGTGCVLK---NVV-IGNDVEIKPYSVLEDSIVGEKAA 325

Query: 117 VLP-------TIIGDNVTVG------------HSAVLH---------------GC----- 137
           + P         +     VG             S V H               G      
Sbjct: 326 IGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITC 385

Query: 138 ----------TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
                      + D+ FVG    L+  V V   A + AG  + ++
Sbjct: 386 NYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRD 430

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 32/115 (27%)

Query: 67  IIGDVQVGRGSSIWYGCVLRGDV---NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG 123
           I  DV +GR + I  G  L G         +G  T + D                   +G
Sbjct: 280 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTD-----------------VAVG 322

Query: 124 DNVTVGHSAVLHGCTVEDEAFVG------MGATLLDGV----YVE-KHAMVAAGA 167
           D  +V  +      ++ D A VG       G  L        +VE K++ +  G 
Sbjct: 323 DGASVVRT-HGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGT 376

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} Length = 287

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 120 TIIGDNVTVGHSAVLHGC---------TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
            ++ DNV++ H   L G           +     +G GA +L  + V + + +AAG++V 
Sbjct: 191 AVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVL 250

Query: 171 QNTKIPCGEVWGGNPARFLRKLTEEEMAF 199
           ++  +P      G PAR + +    E + 
Sbjct: 251 KS--VPHNVTVAGVPARIIGETGCTEPSR 277

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 32/115 (27%)

Query: 67  IIGDVQVGRGSSIWYGCVLRGDV---NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG 123
           I  DV++     I    +L+G         + +GT + D                 + IG
Sbjct: 271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVD-----------------STIG 313

Query: 124 DNVTVGHSAVLHGCTVEDEAFVG------MGATLLDGV----YVE-KHAMVAAGA 167
               + +S ++   +V D   VG        ++L   V    +VE K + +    
Sbjct: 314 AGAVITNS-MIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENT 367

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* Length = 267

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 120 TIIGDNVTVGHSAVLHGC---------TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
           ++I ++V++     L G           V +   +G GA +L  + V K+A + A ++V 
Sbjct: 164 SVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVL 223

Query: 171 QNTKIPCGEVWGGNPARFLRKLTEEEMAF 199
               +P      G PAR + +    + AF
Sbjct: 224 NP--VPEYATAAGVPARIVSQDKAAKPAF 250

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 Length = 289

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 120 TIIGDNVTVGHSAVLHGC---------TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
            +I ++V++  S  L G           + +   +G GA +L  + V + A + AG++V 
Sbjct: 184 AVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVL 243

Query: 171 QNTKIPCGEVWGGNPARFLRKLTEEEMAF 199
           Q   +P      G PAR + K   ++ + 
Sbjct: 244 QP--VPPHTTAAGVPARIVGKPDSDKPSM 270

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 51/190 (26%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISIGSG------- 97
            +++ V L  + ++ G   VG+ + I+   VL         +G+ + + IG         
Sbjct: 33  KLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFC 92

Query: 98  ------------TNIQDNSL----VHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVE 140
                       T I D +L    VHVA           +IG +  + +   L G   + 
Sbjct: 93  MINPGTEGGIKKTLIGDKNLLMAYVHVAHD--------CVIGSHCILANGVTLAGHIEIG 144

Query: 141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL--------RKL 192
           D   +G    +   V + K  M+A  + + ++   P   V  GN A           + L
Sbjct: 145 DYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDV-PPYCTVE-GNRAFIRGLNRHRMRQLL 202

Query: 193 TEEEMAFISQ 202
             +++ FI  
Sbjct: 203 ESKDIDFIYA 212

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 33/163 (20%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISIGSGTNIQDNS 104
            + +   L     + G  ++GR + I+    +          G+   + IG    I+++ 
Sbjct: 37  EIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESV 96

Query: 105 LVHVAKSNLAGKVLPTIIGDN------VTVGH------------SAVLHG-CTVEDEAFV 145
            +H       G    T +G +        + H            +A L G  +V+D A +
Sbjct: 97  TIHRGTVQGGGL---TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAII 153

Query: 146 GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARF 188
           G    +     +  H MV   + V Q+   P      GN A  
Sbjct: 154 GGMTAVHQFCIIGAHVMVGGCSGVAQDV-PPYVIA-QGNHATP 194

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISIGSGTNIQDNS 104
            +     +   + I G   +G  + I +   +         + +   + IG    I++ +
Sbjct: 54  TIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFT 113

Query: 105 LVHVAKSNLAGKVLPTIIGDN------VTVGH------------SAVLHG-CTVEDEAFV 145
            +H      AG    T +GD+      V +GH            +A + G   + D A V
Sbjct: 114 TIHTGTVQDAGV---TTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIV 170

Query: 146 GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARF 188
           G  + +   V +  H+M+   + + Q+   P      GN A  
Sbjct: 171 GGMSGVHQYVRIGAHSMLGGASALVQDI-PPFVIA-AGNKAEP 211

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 52/191 (27%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLR------------------GDVNSI--- 92
            + +   +     I    ++G+ +    G V+                   GD N     
Sbjct: 32  SIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREY 91

Query: 93  -------SIGSGTNIQDNSL----VHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVE 140
                     S T I + +      HV            I+G+N  + H AVL G  T+ 
Sbjct: 92  SNIHKGTKEDSPTVIGNKNYFMGNSHVGHD--------CILGNNNILTHGAVLAGHVTLG 143

Query: 141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL---------RK 191
           + AF+     +    +V  ++MVA  A V Q+   P   V  GNP+  +           
Sbjct: 144 NFAFISGLVAVHQFCFVGDYSMVAGLAKVVQDV-PPYSTV-DGNPSTVVGLNSVGMKRAG 201

Query: 192 LTEEEMAFISQ 202
            + E    I  
Sbjct: 202 FSPEVRNAIKH 212

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 95  GSGTNIQDNSL----VHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGA 149
              T I DN+L     H+A            IGD     ++ +L G   VED       +
Sbjct: 130 SDKTVIGDNNLIMGSCHIAHD--------CKIGDRNIFANNTLLAGHVVVEDNTHTAGAS 181

Query: 150 TLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARF 188
            +    ++   A +  G++V Q+       V  G  A  
Sbjct: 182 VVHQFCHIGSFAFIGGGSVVSQDV-PKYMMV-AGERAEL 218

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 31/129 (24%)

Query: 67  IIGD-VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN 125
           II D V++G  +      + RG      +  G+ I DN LV               I   
Sbjct: 230 IIEDDVEIGANT-----TIDRGRFKHSVVREGSKI-DN-LVQ--------------IAHQ 268

Query: 126 VTVGHSAVLHGCT-------VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178
           V VG  +++           + +   +G  A +   + +  H ++ A   V ++  I   
Sbjct: 269 VEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKS--ITSP 326

Query: 179 EVWGGNPAR 187
            ++GG PAR
Sbjct: 327 GIYGGAPAR 335

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 21/103 (20%)

Query: 45  LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNS 104
            + +F   PV +    + P+A I     +     I    V         +    ++    
Sbjct: 112 CLELFIT-PVDSGFPGIHPTAVIHPTAIIEDHVCIEPYAV---------VCQHAHVGSAC 161

Query: 105 LVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVG 146
            +       +G    ++IG   TVG  + +H    + +   +G
Sbjct: 162 HIG------SG----SVIGAYSTVGEHSYIHPRVVIRERVSIG 194

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 22/103 (21%)

Query: 45  LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNS 104
           L ++FD+ P     +   P+A +  D +V   +S+    V         I SG  I    
Sbjct: 108 LSHLFDRKPKAAAGI--HPTAIVAADAEVDPSASVGAYAV---------IESGARIGAGV 156

Query: 105 LVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVG 146
            +       A      +IG    +G    L    T+  +  +G
Sbjct: 157 SIG------AH----CVIGARSVIGEGGWLAPRVTLYHDVTIG 189

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 44/136 (32%)

Query: 67  IIGD-VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA-------------KSN 112
            IGD V++G  +      + RG ++   IG+G  + DN  + +A                
Sbjct: 224 TIGDDVEIGANT-----TIDRGALSDTLIGNGVKL-DN-QIMIAHNVQIGDHTAMAACVG 276

Query: 113 LAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
           ++G      IG +  +     L G   + D                  +  V    +V +
Sbjct: 277 ISGS---AKIGRHCMLAGGVGLVGHIEICD------------------NVFVTGMTMVTR 315

Query: 172 NTKIPCGEVWGGNPAR 187
           +   P G    G   +
Sbjct: 316 SITEP-GSYSSGTAMQ 330

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 42/242 (17%), Positives = 81/242 (33%), Gaps = 62/242 (25%)

Query: 48  IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNI------- 100
           + ++   +  DV +   A +  D ++G    I  G  +  D    +IG  + +       
Sbjct: 12  VIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDT---TIGDHSRVFSYAIVG 68

Query: 101 ---QD-------NSLVHVAKSNL-----------AGKVLPTIIGDN------VTVGH--- 130
              QD        S V + K+             A     T IGDN        + H   
Sbjct: 69  DIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCL 128

Query: 131 ---------SAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
                    +A L G   + D   VG    +   V V +  M+A  + + Q+  +P    
Sbjct: 129 LGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDI-VPFCLA 187

Query: 181 WGGNPARFL--------RKLTEEEMAFISQS--AINYSNLARVHAAENAKSFDEIEFEKL 230
             GN A           R+  ++E+  +S++   +      + +A    ++ +    +K+
Sbjct: 188 -EGNRASIRSLNLVGIRRRFDKDEVDRLSRAFKTLFRQGDLKENAKNLLENQESENVKKM 246

Query: 231 LR 232
             
Sbjct: 247 CH 248

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 22/103 (21%)

Query: 45  LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNS 104
           +  I D  P   +++  APSA I    ++G   SI    V         I SG  + DN 
Sbjct: 86  MAQILDTTPQPAQNI--APSAVIDATAKLGNNVSIGANAV---------IESGVELGDNV 134

Query: 105 LVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVG 146
           ++       AG      +G N  +G  + L    T+  E  +G
Sbjct: 135 IIG------AG----CFVGKNSKIGAGSRLWANVTIYHEIQIG 167

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 44/136 (32%)

Query: 67  IIGD-VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA-------------KSN 112
           IIGD V++G  +      + RG ++   IG+G  I DN    +A                
Sbjct: 202 IIGDRVEIGACT-----TIDRGALDDTIIGNGVII-DN-QCQIAHNVVIGDNTAVAGGVI 254

Query: 113 LAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
           +AG      IG    +G ++V++G   + D                     V    +V +
Sbjct: 255 MAGS---LKIGRYCMIGGASVINGHMEICD------------------KVTVTGMGMVMR 293

Query: 172 NTKIPCGEVWGGNPAR 187
               P G    G P +
Sbjct: 294 PITEP-GVYSSGIPLQ 308

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A Length = 313

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 17/97 (17%)

Query: 120 TIIGDNVTVGHSAVLHGC-----------------TVEDEAFVGMGATLLDGVYVEKHAM 162
            IIG+   +  S  L                    TV D   +G GA +L  + V  H  
Sbjct: 190 AIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNIIVGSHVR 249

Query: 163 VAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAF 199
           + A   + ++           +P  F++  T + M  
Sbjct: 250 IGANCWIDRDVDSNQTVYISEHPTHFVKPCTTKGMKN 286

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} Length = 310

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 120 TIIGDNVTVGHSAVLHGC------------------TVEDEAFVGMGATLLDGVYVEKHA 161
           +IIG+NV +     L                      +ED+  V   AT+L  V + K A
Sbjct: 217 SIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGKGA 276

Query: 162 MVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE 196
            V     V +N  +P G        +   +     
Sbjct: 277 TVGGNIWVTEN--VPAGSRIVQRKNKDELEHHHHH 309

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.97
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.97
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.97
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.97
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.96
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.96
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.94
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.93
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.93
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.92
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.92
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.92
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.92
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.92
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.92
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.9
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.9
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.9
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.9
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.89
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.89
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.89
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.88
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.88
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.88
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.88
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.88
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.88
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.88
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.88
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.88
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.88
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.87
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.87
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.87
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.86
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.86
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.86
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.86
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.85
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.85
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.85
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.85
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.84
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.84
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.84
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.84
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.84
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.84
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.83
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.83
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.82
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.8
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.8
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.8
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.79
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.77
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.75
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.75
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.74
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.74
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.74
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.71
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.71
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.71
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.7
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.7
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.69
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.67
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.67
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.67
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.67
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.67
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.66
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.66
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.66
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.66
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.65
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.63
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.61
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.6
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.59
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.58
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.56
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.56
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.56
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.55
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.54
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.54
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.5
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.5
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.5
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.49
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.46
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.44
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.41
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.39
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.38
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.36
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.34
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.34
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.32
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.29
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.27
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.24
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.22
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.21
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.19
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.14
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.14
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.12
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.05
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.97

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.97  E-value=3.7e-29  Score=203.85  Aligned_cols=165  Identities=36%  Similarity=0.646  Sum_probs=151.8

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCC
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN  125 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (271)
                      +.+.+..+.|+++++|+|++.|.+++.||++|.|+++++|.++...+.||++|.|+++|.|....      .+++.||++
T Consensus         6 ~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~------~~~~~Ig~~   79 (173)
T 1xhd_A            6 YPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSP------QYPLILEDD   79 (173)
T ss_dssp             ECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCT------TCCEEECTT
T ss_pred             eecCCCCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCC------CCCeEECCC
Confidence            44567788999999999999999999999999999999998765668999999999999998532      247999999


Q ss_pred             cEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHH
Q 024153          126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAI  205 (271)
Q Consensus       126 ~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~  205 (271)
                      |.|++++.+++++||++||||+++.|.++++||++++|+++++|.++..||+++++.|+||+++++++++.+.++++..+
T Consensus        80 ~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~  159 (173)
T 1xhd_A           80 VTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIRT  159 (173)
T ss_dssp             CEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHHHH
T ss_pred             CEECCCCEEeCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCCCEECCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 024153          206 NYSNLARVHAA  216 (271)
Q Consensus       206 ~~~~~~~~~~~  216 (271)
                      .|..+.+.+.+
T Consensus       160 ~~~~~~~~~~~  170 (173)
T 1xhd_A          160 QYVEKGQYYKS  170 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99888887643

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.97  E-value=5.3e-29  Score=202.93  Aligned_cols=166  Identities=36%  Similarity=0.632  Sum_probs=151.8

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCC
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN  125 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (271)
                      +.+.+..+.|+++++|+|++.+.+++.||++|.|++++.|.++...+.||++|.|+++|.|....      .+++.||++
T Consensus         4 ~~~~~~~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~------~~~~~Ig~~   77 (173)
T 1v3w_A            4 YEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSH------GYPTEIGEY   77 (173)
T ss_dssp             ECBTTBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBT------TBCEEECSS
T ss_pred             eccCCCCCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecC------CCCeEECCC
Confidence            34566778899999999999999999999999999999998765669999999999999998532      247999999


Q ss_pred             cEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHH
Q 024153          126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAI  205 (271)
Q Consensus       126 ~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~  205 (271)
                      |.|++++.+++++||++||||.++.|.++++||++|+|+++++|.++..||+++++.|+||+++++++++.+.++...+.
T Consensus        78 ~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~~~~~~~~~~~~~~~  157 (173)
T 1v3w_A           78 VTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAE  157 (173)
T ss_dssp             CEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHHHH
T ss_pred             CEECCCCEECCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcCCEEeccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHH
Q 024153          206 NYSNLARVHAAE  217 (271)
Q Consensus       206 ~~~~~~~~~~~~  217 (271)
                      .|..+...+++.
T Consensus       158 ~y~~~~~~~~~~  169 (173)
T 1v3w_A          158 IYVELAEKHIKG  169 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888877543

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.97  E-value=6.1e-29  Score=205.03  Aligned_cols=171  Identities=39%  Similarity=0.677  Sum_probs=153.5

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC-CCCCccceEEcC
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN-LAGKVLPTIIGD  124 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~-~~~~~~~~~Ig~  124 (271)
                      ..+....+.|+++++|+|++.|.+++.||++|.|++++.|.++...+.||++|.|++++.|....+. .....+++.||+
T Consensus        13 ~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~   92 (189)
T 3r1w_A           13 RTYQGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGD   92 (189)
T ss_dssp             ECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECS
T ss_pred             eeccCcCCEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECC
Confidence            3455667789999999999999999999999999999999876566899999999999999764322 222456899999


Q ss_pred             CcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHH
Q 024153          125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSA  204 (271)
Q Consensus       125 ~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~  204 (271)
                      +|.|++++.|++++||++|+||++++|.++++||++|+|+++++|.++..||+++++.|+||++++++++.+..+++...
T Consensus        93 ~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~pa~~i~~~~~~~~~~~~~~~  172 (189)
T 3r1w_A           93 DVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSFFTYGA  172 (189)
T ss_dssp             SEEECTTCEEESCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETTTTEEEEECCHHHHHHHHHHH
T ss_pred             CCEECCCCEEeCcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECCccccccCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHH
Q 024153          205 INYSNLARVHAA  216 (271)
Q Consensus       205 ~~~~~~~~~~~~  216 (271)
                      +.|..+...+.+
T Consensus       173 ~~~~~~~~~~~~  184 (189)
T 3r1w_A          173 GNYVRLKDKHLA  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            888888887644

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.97  E-value=1.1e-28  Score=203.13  Aligned_cols=172  Identities=37%  Similarity=0.631  Sum_probs=151.6

Q ss_pred             hhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC-CCCCccceEEc
Q 024153           45 LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN-LAGKVLPTIIG  123 (271)
Q Consensus        45 ~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~-~~~~~~~~~Ig  123 (271)
                      ++.+....+.++++++|+|++.|.+++.||++|.|+++++|.++.+.+.||++|.|++++.|....+. ..+..+++.||
T Consensus         8 ~~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig   87 (187)
T 3r3r_A            8 LRPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIG   87 (187)
T ss_dssp             EECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEEC
T ss_pred             HHhhcccCcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEEC
Confidence            44566777889999999999999999999999999999999876456799999999999999743221 11234689999


Q ss_pred             CCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHH
Q 024153          124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQS  203 (271)
Q Consensus       124 ~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~  203 (271)
                      ++|.|++++.|++++||++||||++++|.++++||++|+|+++++|.++..||+++++.|+||++++++++.+..+++..
T Consensus        88 ~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~i~~~~~~~~~~~~~~  167 (187)
T 3r3r_A           88 EDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSGLQYS  167 (187)
T ss_dssp             SSCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEETTTTEEEEECCHHHHHHHHHH
T ss_pred             CCCEECCCCEEeCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEecCCeEcCcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHH
Q 024153          204 AINYSNLARVHAA  216 (271)
Q Consensus       204 ~~~~~~~~~~~~~  216 (271)
                      ...|..+.+.+++
T Consensus       168 ~~~~~~~~~~~~~  180 (187)
T 3r3r_A          168 ANNYVKWKDDYLS  180 (187)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888776533

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.96  E-value=8.2e-29  Score=204.96  Aligned_cols=166  Identities=47%  Similarity=0.839  Sum_probs=150.7

Q ss_pred             hhhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEc
Q 024153           44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG  123 (271)
Q Consensus        44 ~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig  123 (271)
                      .++.+.++.+.|+++++|+|++.|.+++.||++|.|+++++|.++...+.||++|.|+++|.|....+.     +++.||
T Consensus        25 ~~~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~-----g~~~Ig   99 (191)
T 3ixc_A           25 VLVPYAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMH-----GDTVIG   99 (191)
T ss_dssp             TEECBTTBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC---------CCEEEC
T ss_pred             ceecccCCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCc-----CCeEEC
Confidence            356778889999999999999999999999999999999999876566899999999999999854321     169999


Q ss_pred             CCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHH
Q 024153          124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQS  203 (271)
Q Consensus       124 ~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~  203 (271)
                      ++|.|++++.+++++||++|+||++++|.++++||++|+|+++++|.++..||+++++.|+||++++++++.+..++++.
T Consensus       100 ~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~~~~~~~~~~~~~  179 (191)
T 3ixc_A          100 KFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTEEEILYLQKS  179 (191)
T ss_dssp             TTCEECTTCEECSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHH
T ss_pred             CCCEECCCCEEECCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEEECcCceecccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999998888


Q ss_pred             HHHHHHHHHHH
Q 024153          204 AINYSNLARVH  214 (271)
Q Consensus       204 ~~~~~~~~~~~  214 (271)
                      ++.|.++.+.+
T Consensus       180 ~~~~~~l~~~~  190 (191)
T 3ixc_A          180 AENYIALSRGY  190 (191)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            88888887643

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.96  E-value=6.3e-28  Score=200.08  Aligned_cols=167  Identities=19%  Similarity=0.219  Sum_probs=127.2

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC------CCccc
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA------GKVLP  119 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~------~~~~~  119 (271)
                      .....+.+.|+++++|++++.|.+++.||++|.|+++++|.++.+.+.||++|.|++++.|........      ....+
T Consensus         6 ~~k~~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~   85 (194)
T 3tv0_A            6 AEKTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKP   85 (194)
T ss_dssp             ------CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CC
T ss_pred             hhhcCCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCc
Confidence            345667899999999999999999999999999999999998777899999999999999976544322      23567


Q ss_pred             eEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-----CCH
Q 024153          120 TIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-----LTE  194 (271)
Q Consensus       120 ~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-----~~~  194 (271)
                      +.||+++.|+.++.++++.||++|||+++++|.++++||++|+||++|+|.+++.||+++++.|+|++....     ...
T Consensus        86 ~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~~~~~~~~~~~~~  165 (194)
T 3tv0_A           86 MIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQT  165 (194)
T ss_dssp             EEECSSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCCEEEECCCCCC--
T ss_pred             eEECCcceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcEEeecccCcccch
Confidence            899999999999999999999999999999999999999999999999999999999999999999975422     122


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 024153          195 EEMAFISQSAINYSNLAR  212 (271)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~  212 (271)
                      .+++++++....|..+..
T Consensus       166 ~~~~~l~k~~p~y~~l~k  183 (194)
T 3tv0_A          166 LQLDFLMKILPNYHHLKK  183 (194)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHhHHHHHHHH
Confidence            333445555455544443

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.94  E-value=8.1e-26  Score=194.25  Aligned_cols=201  Identities=26%  Similarity=0.369  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHhhcccccCchhhhhh------hh-hhh---hhhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccC
Q 024153           13 FWIRETGQALDRLGCRLQGNYYFQEQ------LS-RHR---TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYG   82 (271)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~~~---~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~   82 (271)
                      .++..+++.+.+++..+.|...+.+.      +. ...   ..+...+..+.|+++++|+|++.|.+++.||++|.|+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~   89 (247)
T 1qre_A           10 ILILSLSLALAGSGCISEGAEDNVAQEITVDEFSNIRENPVTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPM   89 (247)
T ss_dssp             ----------------------------CCCCCCSEECCCCBTTBSSCCCCEECTTCEECTTCEEEESEEECTTCEECTT
T ss_pred             HHHHHHHHHHhhccceeecccccccccchhhhhhhccCCCCccccccCCCcEECCCcEECCCCEEeCCcEECCCCEECCC
Confidence            34566777888888888887776655      22 011   234556678899999999999999999999999999999


Q ss_pred             cEEecCCC-ceEECCCCEECCCCEEecCCcC-C------------CCCccceEEcCCcEECcCcEEec-eeeCCCcEEcc
Q 024153           83 CVLRGDVN-SISIGSGTNIQDNSLVHVAKSN-L------------AGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGM  147 (271)
Q Consensus        83 ~~I~~~~~-~~~IG~~~~I~~~~~I~~~~~~-~------------~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~  147 (271)
                      ++|.++.. .+.||++|.|+++|+|...... .            .+..++++||++|.|++++.|++ ++||++|+||+
T Consensus        90 ~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~  169 (247)
T 1qre_A           90 ASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGM  169 (247)
T ss_dssp             CEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECT
T ss_pred             cEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEcCCcEECCCCEECC
Confidence            99997653 6899999999999999865310 0            01124699999999999999998 99999999999


Q ss_pred             CcEEccCcEECCCcEEccCcEe-----cCCceeCCCcEEec-cCceEccCCCHHH--HHHHHHHHHHHHHHHHHH
Q 024153          148 GATLLDGVYVEKHAMVAAGALV-----RQNTKIPCGEVWGG-NPARFLRKLTEEE--MAFISQSAINYSNLARVH  214 (271)
Q Consensus       148 ~~~I~~~v~Ig~~~~Ig~~svV-----~~~~~I~~~~vv~G-~pa~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  214 (271)
                      +++|.+ ++||++|+|+++++|     .+++.|++++++.+ .|++.++.+.+..  ....++....|..+++.+
T Consensus       170 ~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v~~g~vv~~~~pa~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~  243 (247)
T 1qre_A          170 QAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHLAEGY  243 (247)
T ss_dssp             TCEEEE-EEECTTCEECTTCEEESCEECTTBEECTTCEECSHHHHHTCCBCCTTSTTTTHHHHHHHHHHHHHHHH
T ss_pred             CCEEec-eEECCCCEECCCCEECCeEeCCCCEECCCCEEecCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            999999 999999999999999     44555556666655 4888888877666  555566677777777765

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.93  E-value=6.9e-25  Score=190.40  Aligned_cols=155  Identities=19%  Similarity=0.305  Sum_probs=121.5

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEec---------CC-CceEECCCCEECCCCEEecCCcCCC--
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRG---------DV-NSISIGSGTNIQDNSLVHVAKSNLA--  114 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~---------~~-~~~~IG~~~~I~~~~~I~~~~~~~~--  114 (271)
                      ..+++.+.|+++++|++++.|.+++.||++|.|+++++|.+         +. ..+.||++|.|+++++|..+.....  
T Consensus        29 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~  108 (266)
T 3r0s_A           29 AYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGF  108 (266)
T ss_dssp             CEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSE
T ss_pred             CEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCcc
Confidence            34566677777788888888888888888888888888852         22 4688999999999999986543210  


Q ss_pred             -------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcE
Q 024153          115 -------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV  180 (271)
Q Consensus       115 -------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~v  180 (271)
                                   ...+++.||++|+|++++.+.+ ++|||+||||++++|.++++||++++|+++|+|.++  ||++++
T Consensus       109 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~d--vp~~~~  186 (266)
T 3r0s_A          109 TRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQD--IVPFCL  186 (266)
T ss_dssp             EEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCBBCSC--BCTTEE
T ss_pred             EEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCeEecc--cCCCeE
Confidence                         0135677777777777777765 999999999999999999999999999999999998  999999


Q ss_pred             EeccCceE--------ccCCCHHHHHHHHHH
Q 024153          181 WGGNPARF--------LRKLTEEEMAFISQS  203 (271)
Q Consensus       181 v~G~pa~~--------~~~~~~~~~~~~~~~  203 (271)
                      +.|+||++        .+.++++++..+++.
T Consensus       187 ~~G~Pa~~~~~n~~g~~r~~~~~~~~~l~~~  217 (266)
T 3r0s_A          187 AEGNRASIRSLNLVGIRRRFDKDEVDRLSRA  217 (266)
T ss_dssp             EEEBTEEEEEECHHHHHHHSCHHHHHHHHHH
T ss_pred             EeccCcEEeecchhheeecCCHHHHHHHHHH
Confidence            99999998        455777777666554

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.93  E-value=1.5e-26  Score=200.09  Aligned_cols=155  Identities=21%  Similarity=0.268  Sum_probs=124.8

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEe---------cC-CCceEECCCCEECCCCEEecCCcCC---
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLR---------GD-VNSISIGSGTNIQDNSLVHVAKSNL---  113 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~---------~~-~~~~~IG~~~~I~~~~~I~~~~~~~---  113 (271)
                      ..++..+.|+++++|++++.|.+++.||++|.|+++++|.         ++ ...+.||++|.|+++|+|.......   
T Consensus        25 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~  104 (259)
T 3hsq_A           25 SIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPT  104 (259)
T ss_dssp             CEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBCE
T ss_pred             CEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCcE
Confidence            4556778888888888888888889999999999999983         22 4569999999999999998654310   


Q ss_pred             -----------CCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153          114 -----------AGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW  181 (271)
Q Consensus       114 -----------~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv  181 (271)
                                 ....+++.||+++++++++.+. +++||++||||++++|.++++||++++|+++|+|.++  ||+++++
T Consensus       105 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~d--vp~~~~~  182 (259)
T 3hsq_A          105 VIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQD--VPPYSTV  182 (259)
T ss_dssp             EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSSEEECSB--BCTTEEE
T ss_pred             EECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCCCEEccc--CCCCcEE
Confidence                       0113456666666666666664 4999999999999999999999999999999999997  9999999


Q ss_pred             eccCceEc---------cCCCHHHHHHHHHH
Q 024153          182 GGNPARFL---------RKLTEEEMAFISQS  203 (271)
Q Consensus       182 ~G~pa~~~---------~~~~~~~~~~~~~~  203 (271)
                      .|+||+++         +.++++++..+++.
T Consensus       183 ~G~pa~~~~~~~~g~~r~~~~~~~~~~l~~~  213 (259)
T 3hsq_A          183 DGNPSTVVGLNSVGMKRAGFSPEVRNAIKHA  213 (259)
T ss_dssp             ETTTTEEEEECHHHHHHTTCCHHHHHHHHHH
T ss_pred             eccCcEEEeecccceeeCCCCHHHHHHHHHH
Confidence            99999997         66788887776655

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.93  E-value=7.9e-27  Score=202.67  Aligned_cols=148  Identities=18%  Similarity=0.270  Sum_probs=122.1

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC--CCc-cc---
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--GKV-LP---  119 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~--~~~-~~---  119 (271)
                      .+.+.+.+.|++++.|+|+++|.+++.||++|.|+++++|.++   +.||++|.|++++.|...++++.  +.. ..   
T Consensus        10 ~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~I   86 (266)
T 3r0s_A           10 SAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSD---TTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVI   86 (266)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSS---CEECTTCEECTTCEEEECCSCSCCC----CEEEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCC---cEECCCcEEccCceeccCCccccccCCcCceEEE
Confidence            3467788899999999999999999999999999999999976   89999999999999975444321  111 23   


Q ss_pred             ----------------------eEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeC
Q 024153          120 ----------------------TIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIP  176 (271)
Q Consensus       120 ----------------------~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~  176 (271)
                                            ++||++|.|++++.+ +++.||++|+|+.++.+.++++||++++||++++|.++++|+
T Consensus        87 G~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig  166 (266)
T 3r0s_A           87 GKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVG  166 (266)
T ss_dssp             CTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEEC
Confidence                                  555555555566655 558899999999999999999999999999999999999999


Q ss_pred             CCcEEeccCceEccCCCHHHH
Q 024153          177 CGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       177 ~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      +++++++. +.+.+++|++.+
T Consensus       167 ~~a~Vg~~-s~V~~dvp~~~~  186 (266)
T 3r0s_A          167 EGCMIAGA-SALSQDIVPFCL  186 (266)
T ss_dssp             TTCEECSS-CBBCSCBCTTEE
T ss_pred             CCCEEccC-CeEecccCCCeE
Confidence            99999776 778888887765

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.93  E-value=1.9e-26  Score=200.13  Aligned_cols=155  Identities=15%  Similarity=0.275  Sum_probs=123.1

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEe---------cCCCceEECCCCEECCCCEEecCCcCCC---
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLR---------GDVNSISIGSGTNIQDNSLVHVAKSNLA---  114 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~---------~~~~~~~IG~~~~I~~~~~I~~~~~~~~---  114 (271)
                      ..+++.+.|++++.|++++.|.+++.||++|.|+++++|.         ++...+.||++|.|+++++|..+.....   
T Consensus        32 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~  111 (265)
T 4e6u_A           32 CIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALT  111 (265)
T ss_dssp             CEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEE
T ss_pred             eEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCce
Confidence            4456677777788888888888888888888888888883         3335688899999999888875432110   


Q ss_pred             ------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153          115 ------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW  181 (271)
Q Consensus       115 ------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv  181 (271)
                                  ...+++.||++|+|+.++.+.+ ++||++||||++++|.++++||++++|+++|+|.++  ||+++++
T Consensus       112 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~d--vp~~~~~  189 (265)
T 4e6u_A          112 KIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKD--VPAYVMA  189 (265)
T ss_dssp             EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEE
T ss_pred             EEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCCCEEccc--CCCCeEE
Confidence                        1135677777777777777765 999999999999999999999999999999999998  9999999


Q ss_pred             eccCceEc---------cCCCHHHHHHHHHH
Q 024153          182 GGNPARFL---------RKLTEEEMAFISQS  203 (271)
Q Consensus       182 ~G~pa~~~---------~~~~~~~~~~~~~~  203 (271)
                      .|+||+++         +.++++++..+++.
T Consensus       190 ~G~pa~~~~~~~~g~~r~~~~~~~~~~l~~~  220 (265)
T 4e6u_A          190 SGNPAHAFGINIEGMRRKGWSKNTIQGLREA  220 (265)
T ss_dssp             EETTEEEEEECHHHHHHTTCCHHHHHHHHHH
T ss_pred             EccCCEEeccccccceecCCCHHHHHHHHHH
Confidence            99999997         56787777766554

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.93  E-value=1.4e-24  Score=188.86  Aligned_cols=155  Identities=19%  Similarity=0.272  Sum_probs=120.7

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEe---------cCCCceEECCCCEECCCCEEecCCcCCC---
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLR---------GDVNSISIGSGTNIQDNSLVHVAKSNLA---  114 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~---------~~~~~~~IG~~~~I~~~~~I~~~~~~~~---  114 (271)
                      ..+++.+.|+++++|++++.|.+++.||++|.|+++++|.         ++...+.||++|.|+++|+|........   
T Consensus        26 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~  105 (270)
T 1j2z_A           26 CVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKT  105 (270)
T ss_dssp             CEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTSEE
T ss_pred             CEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCccE
Confidence            4456677777777777888888888888888888888883         3345688888888888888876532110   


Q ss_pred             ------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153          115 ------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW  181 (271)
Q Consensus       115 ------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv  181 (271)
                                  ...+++.||++|+|++++.+.+ ++||++|+||+++.|.++++||++|+|+++|+|.++  ||+++++
T Consensus       106 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~d--vp~~~~~  183 (270)
T 1j2z_A          106 LIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTV  183 (270)
T ss_dssp             EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEE
T ss_pred             EECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCceEEecCcEeccc--CCCCeEE
Confidence                        0125566666666666666644 899999999999999999999999999999999998  9999999


Q ss_pred             eccCceEc--------cCCCHHHHHHHHHH
Q 024153          182 GGNPARFL--------RKLTEEEMAFISQS  203 (271)
Q Consensus       182 ~G~pa~~~--------~~~~~~~~~~~~~~  203 (271)
                      .|+||+++        +.+++.++..+++.
T Consensus       184 ~G~pa~~~~~n~~g~r~~~~~~~~~~~~~~  213 (270)
T 1j2z_A          184 EGNRAFIRGLNRHRMRQLLESKDIDFIYAL  213 (270)
T ss_dssp             ETTBTEEEEECHHHHHHHSCHHHHHHHHHH
T ss_pred             ecCCcEEecccchhhhcCCCHHHHHHHHHH
Confidence            99999998        67888887776654

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.93  E-value=2.7e-25  Score=185.64  Aligned_cols=133  Identities=18%  Similarity=0.298  Sum_probs=121.0

Q ss_pred             ceECCCCEECCCcEEec--CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153           53 PVVNKDVFLAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH  130 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~  130 (271)
                      ..+++++.|++++.|.+  ++.||++|.|+++++|.++   +.||++|.|++++.|.+..       ++++||++|.|++
T Consensus        33 ~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~---v~IG~~~~I~~~~~I~~~~-------~~~~IG~~~~Ig~  102 (205)
T 3vbi_A           33 LSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGK---VTIGSYSHIAAYTALYGGE-------VGIEMYDFANISS  102 (205)
T ss_dssp             SEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEE---EEECSSEEECTTCEEEEEE-------EEEEECTTCEECT
T ss_pred             eEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccc---eEECCCCEECCCeEEEcCC-------ccEEECCCCEECC
Confidence            46889999999999987  8999999999999999865   9999999999999997532       3699999999999


Q ss_pred             CcEE--------------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEecc
Q 024153          131 SAVL--------------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGN  184 (271)
Q Consensus       131 ~~~i--------------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~  184 (271)
                      ++.|                          .+++||++||||++|+|.++++||++|+|+++|+|.++  ||+++++.|+
T Consensus       103 ~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~--v~~~~v~~G~  180 (205)
T 3vbi_A          103 RTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES--LDDWYIYVGV  180 (205)
T ss_dssp             TCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC--BCTTEEEETT
T ss_pred             CcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc--cCCCeEEEcc
Confidence            9999                          34999999999999999999999999999999999998  9999999999


Q ss_pred             CceEccCCCHHHH
Q 024153          185 PARFLRKLTEEEM  197 (271)
Q Consensus       185 pa~~~~~~~~~~~  197 (271)
                      ||++++.+.+...
T Consensus       181 Pa~~i~~~~~~~~  193 (205)
T 3vbi_A          181 PVRKIKARKRKIV  193 (205)
T ss_dssp             TTEEEEECCCHHH
T ss_pred             CCEEeeechhhhH
Confidence            9999998765443

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.93  E-value=2e-26  Score=201.86  Aligned_cols=154  Identities=19%  Similarity=0.261  Sum_probs=113.3

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEec---------CCCceEECCCCEECCCCEEecCCcCCC----
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRG---------DVNSISIGSGTNIQDNSLVHVAKSNLA----  114 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~---------~~~~~~IG~~~~I~~~~~I~~~~~~~~----  114 (271)
                      .++..+.|++++.|++++.|.+++.||++|.|+++++|.+         +...+.||++|.|+++|+|..+.....    
T Consensus        48 ~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~~~~  127 (283)
T 4eqy_A           48 IVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTT  127 (283)
T ss_dssp             EECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEEECCCTTTTSEEE
T ss_pred             EECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeEccceecCCCceE
Confidence            3445555666666666666666677777777777777732         224577788888888888775432110    


Q ss_pred             -----------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153          115 -----------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG  182 (271)
Q Consensus       115 -----------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~  182 (271)
                                 ...+++.||++|+|++++.+.+ ++||++||||++++|.++++||++++|+++|+|.++  ||+++++.
T Consensus       128 IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~d--vp~~~~~~  205 (283)
T 4eqy_A          128 LGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQD--IPPFVIAA  205 (283)
T ss_dssp             ECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEE
T ss_pred             ECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECCCCeEecc--cCCCcEEe
Confidence                       0135677777777777777755 999999999999999999999999999999999998  99999999


Q ss_pred             ccCceEc---------cCCCHHHHHHHHHH
Q 024153          183 GNPARFL---------RKLTEEEMAFISQS  203 (271)
Q Consensus       183 G~pa~~~---------~~~~~~~~~~~~~~  203 (271)
                      |+||+++         +.++++++..+++.
T Consensus       206 G~pa~~~~~n~~gl~r~~~~~~~~~~l~~~  235 (283)
T 4eqy_A          206 GNKAEPHGINVEGLRRRGFSPDAISALRSA  235 (283)
T ss_dssp             TBTTEEEEECHHHHHHTTCCHHHHHHHHHH
T ss_pred             ccCcEEeecccccceecCCCHHHHHHHHHH
Confidence            9999987         46777777766554

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.92  E-value=7.1e-24  Score=183.53  Aligned_cols=154  Identities=19%  Similarity=0.298  Sum_probs=110.2

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEec---------CCCceEECCCCEECCCCEEecCCcCCC----
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRG---------DVNSISIGSGTNIQDNSLVHVAKSNLA----  114 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~---------~~~~~~IG~~~~I~~~~~I~~~~~~~~----  114 (271)
                      .++..+.|+++++|++++.|.+++.||++|.|+++++|.+         +...+.||++|.|+++++|........    
T Consensus        31 ~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~  110 (262)
T 2qia_A           31 IVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTK  110 (262)
T ss_dssp             EECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEE
T ss_pred             EECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcCE
Confidence            3445566666666666666766777777777777777743         223577788888888777775432100    


Q ss_pred             -----------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153          115 -----------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG  182 (271)
Q Consensus       115 -----------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~  182 (271)
                                 ...+++.||+++.+++++.+.+ ++||++||||.++.|.++++||++++|+++|+|.++  ||+++++.
T Consensus       111 IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~--v~~~~~~~  188 (262)
T 2qia_A          111 VGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD--VPPYVIAQ  188 (262)
T ss_dssp             ECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSB--BCTTEEEE
T ss_pred             ECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCCEEccCCEECCc--CCCCeEEe
Confidence                       0013444444444444444433 889999999999999999999999999999999998  99999999


Q ss_pred             ccCceEc---------cCCCHHHHHHHHHH
Q 024153          183 GNPARFL---------RKLTEEEMAFISQS  203 (271)
Q Consensus       183 G~pa~~~---------~~~~~~~~~~~~~~  203 (271)
                      |+||+++         +.+++..+..+.+.
T Consensus       189 G~pa~~~~~~~~g~~~~~~~~~~~~~l~~~  218 (262)
T 2qia_A          189 GNHATPFGVNIEGLKRRGFSREAITAIRNA  218 (262)
T ss_dssp             EBTEEEEEECHHHHHHTTCCHHHHHHHHHH
T ss_pred             ccCceEecccccccEecCCCHHHHHHHHHH
Confidence            9999997         67888777765544

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.92  E-value=5.5e-26  Score=197.71  Aligned_cols=147  Identities=18%  Similarity=0.269  Sum_probs=123.7

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC--CCc-------
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--GKV-------  117 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~--~~~-------  117 (271)
                      +.+.+.+.|++++.|+|+|.|++++.||++|.|+++++|.++   +.||++|.|+++++|...++++.  +..       
T Consensus         8 a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~   84 (270)
T 1j2z_A            8 AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGH---TFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGE   84 (270)
T ss_dssp             CEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSE---EEECTTCEECTTCEESCCCSCSSCCSCCCEEEECS
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCC---eEEcCCCEEEeeeEECcCCccccccCCccceEECC
Confidence            456778889999999999999999999999999999999865   99999999999999976544321  111       


Q ss_pred             ------------------cceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC
Q 024153          118 ------------------LPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG  178 (271)
Q Consensus       118 ------------------~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~  178 (271)
                                        +.+.||+++.|++++.| ++|.||++|+|+.++.+.++++||++++||++++|.++++|+++
T Consensus        85 ~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~  164 (270)
T 1j2z_A           85 DNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKG  164 (270)
T ss_dssp             SCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTT
T ss_pred             CCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCc
Confidence                              24667777777777766 55889999999999999999999999999999999999999999


Q ss_pred             cEEeccCceEccCCCHHHH
Q 024153          179 EVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       179 ~vv~G~pa~~~~~~~~~~~  197 (271)
                      +++++. +.+.++++++.+
T Consensus       165 a~Ig~~-s~V~~dvp~~~~  182 (270)
T 1j2z_A          165 CMIAGK-SALGKDVPPYCT  182 (270)
T ss_dssp             CEECTT-CEECSBBCTTEE
T ss_pred             eEEecC-cEecccCCCCeE
Confidence            999766 899888887665

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.92  E-value=1.3e-24  Score=179.51  Aligned_cols=134  Identities=25%  Similarity=0.363  Sum_probs=120.8

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCc
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV  126 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~  126 (271)
                      ..+++.+.|++++.|++++.|.+++.||++|.|++++.|..+   +.||++|.|++++.|..          ++.||+++
T Consensus        10 a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~---~~IG~~~~I~~~~~I~~----------~~~Ig~~~   76 (192)
T 3mqg_A           10 AIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNR---VRIGNRVKIQNNVSVYD----------NVFLEDDV   76 (192)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSS---CEECSSCEECTTCEECT----------TEEECTTC
T ss_pred             cEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCc---eEECCCcEEcCCcEEeC----------CCEECCCC
Confidence            456677888899999999999999999999999999999755   89999999999999974          78999999


Q ss_pred             EECcCcEE----------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153          127 TVGHSAVL----------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR  190 (271)
Q Consensus       127 ~i~~~~~i----------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~  190 (271)
                      .|++++.+                .+++||++||||.+++|.++++||++++|+++|+|.++  +|+++++.|+||++++
T Consensus        77 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~--vp~~~v~~G~PAk~i~  154 (192)
T 3mqg_A           77 FCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKD--VPDFALVVGVPARQIG  154 (192)
T ss_dssp             EECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEE
T ss_pred             EECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcc--cCCCCEEEccCCEEEE
Confidence            99998877                34899999999999999999999999999999999998  9999999999999998


Q ss_pred             CCCHH
Q 024153          191 KLTEE  195 (271)
Q Consensus       191 ~~~~~  195 (271)
                      .+.+.
T Consensus       155 ~~~~~  159 (192)
T 3mqg_A          155 WMSRH  159 (192)
T ss_dssp             EBCTT
T ss_pred             eeccc
Confidence            76543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.92  E-value=7.2e-24  Score=187.47  Aligned_cols=140  Identities=19%  Similarity=0.311  Sum_probs=95.1

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEec--------------------------------CCCceEEC
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRG--------------------------------DVNSISIG   95 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~--------------------------------~~~~~~IG   95 (271)
                      .+++.+.|++++.|++++.|.+++.||++|.|+++++|..                                +...+.||
T Consensus        33 ~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG  112 (305)
T 3t57_A           33 TIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIG  112 (305)
T ss_dssp             EECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEEECCCCTTCCTTCCEEEEEC
T ss_pred             EECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeCccccccceecCCCceEEEC
Confidence            3455555666666666666666666666666666555542                                12235555


Q ss_pred             CCCEECCCCEEecCCcCCC--------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCC
Q 024153           96 SGTNIQDNSLVHVAKSNLA--------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKH  160 (271)
Q Consensus        96 ~~~~I~~~~~I~~~~~~~~--------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~  160 (271)
                      ++|.|+++|+|........              ...+++.||++|.+++++.+.+ ++|||+||||.++.|.++++||++
T Consensus       113 ~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~  192 (305)
T 3t57_A          113 NNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSF  192 (305)
T ss_dssp             SSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTT
T ss_pred             CCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCC
Confidence            5555555555554332100              1134445555555555555544 999999999999999999999999


Q ss_pred             cEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          161 AMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       161 ~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                      |+|+++|+|.++  ||+++++.|+||++.
T Consensus       193 a~ig~gs~V~~d--vp~~~~~~G~Pa~~~  219 (305)
T 3t57_A          193 AFIGGGSVVSQD--VPKYMMVAGERAELR  219 (305)
T ss_dssp             CEECTTCEECSB--BCTTEEEETTBTEEE
T ss_pred             CEEcCCCeEccc--CCCCeEEecCCcEEe
Confidence            999999999998  999999999999985

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.92  E-value=6.2e-24  Score=178.45  Aligned_cols=159  Identities=26%  Similarity=0.403  Sum_probs=134.1

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCC-ceEECCCCEECCCCEEecCCcC----CCCCccceE
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQDNSLVHVAKSN----LAGKVLPTI  121 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~-~~~IG~~~~I~~~~~I~~~~~~----~~~~~~~~~  121 (271)
                      ......+.|+++++|++++.|.+++.||++|.|++++.|.++.+ .+.||++|.|+++|.|....++    .++..++++
T Consensus        34 ~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~  113 (213)
T 3kwd_A           34 SRDLAEPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVW  113 (213)
T ss_dssp             ---CCCCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEE
T ss_pred             eecCCCCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceE
Confidence            34456678999999999999999999999999999999987633 6999999999999999864332    122334699


Q ss_pred             EcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEe-----cCCceeCCCcEEe-ccCceEccCCCH
Q 024153          122 IGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV-----RQNTKIPCGEVWG-GNPARFLRKLTE  194 (271)
Q Consensus       122 Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV-----~~~~~I~~~~vv~-G~pa~~~~~~~~  194 (271)
                      ||++|.|++++.|.+ ++||++||||++++|.+ ++||++|+|+++++|     .+++.||+++++. |+||+.++++++
T Consensus       114 IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~~~~i~~~~~v~~~~vv~~g~pa~~i~~~~~  192 (213)
T 3kwd_A          114 IGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQDVEIPPGKYVPSGMVITTQQQADRLPNVEE  192 (213)
T ss_dssp             ECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEEESCEECTTBEECTTCEECSHHHHTTCCBCCH
T ss_pred             ECCCcEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEECCcEeCCCCEECCCcEEcCCCCccccccCCH
Confidence            999999999999988 99999999999999987 999999999999999     6677899999999 999999999998


Q ss_pred             HHHHHHHHHHHH
Q 024153          195 EEMAFISQSAIN  206 (271)
Q Consensus       195 ~~~~~~~~~~~~  206 (271)
                      .+....++....
T Consensus       193 ~~~~~~~~v~~~  204 (213)
T 3kwd_A          193 SDIHFAQHVVGI  204 (213)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHH
Confidence            887665544333

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.92  E-value=1.6e-23  Score=181.04  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=129.2

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEE-------------CCCCEECCCCEEecCCcCC
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISI-------------GSGTNIQDNSLVHVAKSNL  113 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~I-------------G~~~~I~~~~~I~~~~~~~  113 (271)
                      ..+++.+.|++++.|++++.|.+++.|+.++.|++++.|...   +.|             ..++.|+++|.|.....-.
T Consensus        19 v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~---a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~   95 (259)
T 3hsq_A           19 VEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQG---AVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIH   95 (259)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTT---CEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEE
T ss_pred             CEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCC---CEECCCcccccccCccCCcEEECCCcEECCCCEEC
Confidence            356677777888888899999999999999999999999865   788             7899999999998765533


Q ss_pred             CC--CccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153          114 AG--KVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR  190 (271)
Q Consensus       114 ~~--~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~  190 (271)
                      .+  ..+.+.||++|.|++++.|. +|.||++|+|+.++.+.++++||++|+||++++|.++++|++++++++. +.+.+
T Consensus        96 ~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~-s~V~~  174 (259)
T 3hsq_A           96 KGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGL-AKVVQ  174 (259)
T ss_dssp             CCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSS-EEECS
T ss_pred             CCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCC-CEEcc
Confidence            22  23589999999999999995 5999999999999999999999999999999999999999999999765 89999


Q ss_pred             CCCHHHHH
Q 024153          191 KLTEEEMA  198 (271)
Q Consensus       191 ~~~~~~~~  198 (271)
                      ++|++.+.
T Consensus       175 dvp~~~~~  182 (259)
T 3hsq_A          175 DVPPYSTV  182 (259)
T ss_dssp             BBCTTEEE
T ss_pred             cCCCCcEE
Confidence            99887653

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.90  E-value=1.2e-22  Score=176.06  Aligned_cols=146  Identities=20%  Similarity=0.215  Sum_probs=123.9

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEEC------------CCCEECCCCEEecCCcCCCC
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIG------------SGTNIQDNSLVHVAKSNLAG  115 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG------------~~~~I~~~~~I~~~~~~~~~  115 (271)
                      .+++.+.|++++.|++++.|.+++.|+.++.|+.+|.|...   +.||            .++.|++++.|.....-..+
T Consensus        27 ~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~---a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g  103 (265)
T 4e6u_A           27 QIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQF---ASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRG  103 (265)
T ss_dssp             EECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTT---CEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECC
T ss_pred             EECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCC---cEECCccccccccCCCCeEEECCCeEECCceEECcc
Confidence            34455556666666777777889999999999999999865   7885            47899999999876653322


Q ss_pred             ---CccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC
Q 024153          116 ---KVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK  191 (271)
Q Consensus       116 ---~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~  191 (271)
                         ..+.+.||++|.|++++.+ +++.||++|+|+.++.+.++++||++|+||++++|.++++|++++++++. +.+.++
T Consensus       104 ~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~-svV~~d  182 (265)
T 4e6u_A          104 TVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGA-SLILKD  182 (265)
T ss_dssp             CTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT-CEECSB
T ss_pred             cccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCC-CEEccc
Confidence               2246999999999999999 67999999999999999999999999999999999999999999999765 888899


Q ss_pred             CCHHHH
Q 024153          192 LTEEEM  197 (271)
Q Consensus       192 ~~~~~~  197 (271)
                      +|++.+
T Consensus       183 vp~~~~  188 (265)
T 4e6u_A          183 VPAYVM  188 (265)
T ss_dssp             BCTTEE
T ss_pred             CCCCeE
Confidence            887765

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.90  E-value=1.1e-22  Score=178.12  Aligned_cols=145  Identities=17%  Similarity=0.202  Sum_probs=122.2

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECC------------CCEECCCCEEecCCcCCCCC
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGS------------GTNIQDNSLVHVAKSNLAGK  116 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~------------~~~I~~~~~I~~~~~~~~~~  116 (271)
                      +++.+.|++++.|++++.|.+++.|+.++.|+.+|.|...   +.||.            ++.|++++.|.....-..+.
T Consensus        43 Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~---a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~g~  119 (283)
T 4eqy_A           43 VGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHY---ASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGT  119 (283)
T ss_dssp             ECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTT---EEEEECCCCTTCCCCCCEEEECSSCEECTTEEEECCC
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCC---cEECCCCccccccCCCceEEECCCcccCcceeEccce
Confidence            4445555556666666777789999999999999999865   88863            78999999998765533221


Q ss_pred             ---ccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153          117 ---VLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       117 ---~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~  192 (271)
                         .+.+.||++|.|++++.+ ++|+||++|+|+.++.+.++++||++|+||++++|.++++|++++++++. +.+.+++
T Consensus       120 ~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~-s~V~~dv  198 (283)
T 4eqy_A          120 VQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGA-SALVQDI  198 (283)
T ss_dssp             TTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CEECSBB
T ss_pred             ecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECCC-CeEeccc
Confidence               235999999999999999 77999999999999999999999999999999999999999999999776 8888898


Q ss_pred             CHHHH
Q 024153          193 TEEEM  197 (271)
Q Consensus       193 ~~~~~  197 (271)
                      +++.+
T Consensus       199 p~~~~  203 (283)
T 4eqy_A          199 PPFVI  203 (283)
T ss_dssp             CTTEE
T ss_pred             CCCcE
Confidence            87765

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.90  E-value=1.2e-23  Score=174.57  Aligned_cols=131  Identities=23%  Similarity=0.344  Sum_probs=109.2

Q ss_pred             eECCCCEECCC--cEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153           54 VVNKDVFLAPS--ASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS  131 (271)
Q Consensus        54 ~i~~~~~I~~~--~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~  131 (271)
                      .+++++.|.++  +.++.++.||+++.|+++++|. +...++||++|.|+++|.|....+          ..+......+
T Consensus        58 ~ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~-~~~~i~IG~~~~Ig~~~~I~~~~~----------~~~~~~~~~~  126 (195)
T 3nz2_A           58 HLGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVML-DGAPITIGDHVLIGPSTQFYTASH----------SLDYRRRQAW  126 (195)
T ss_dssp             EECTTCEECSSEEESCSTTEEECTTCEECTTEEEE-CSSCEEECTTCEECTTCEEECEEC----------CSSGGGTTTC
T ss_pred             hcCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEe-cCceEEECCCCEECCCCEEecCCC----------Cccccccccc
Confidence            48888999994  5677899999999999999997 445689999999999999986443          3344444444


Q ss_pred             cEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          132 AVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       132 ~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      +.+ ++++||++||||++|+|.++++||++|+||++|+|.++  ||+++++.|+||++++.+.+...
T Consensus       127 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i~~~~~~~~  191 (195)
T 3nz2_A          127 ETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD--VPPDTLVGGTPARILRSLKDPAE  191 (195)
T ss_dssp             CCEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEEECC----
T ss_pred             ceecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEccCCEEecccChHhH
Confidence            544 45999999999999999999999999999999999998  99999999999999999876553

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.90  E-value=1.2e-23  Score=186.06  Aligned_cols=147  Identities=23%  Similarity=0.354  Sum_probs=111.4

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEe-------------------
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVH-------------------  107 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~-------------------  107 (271)
                      +.+.+.+.|++++.|+|+++|++++.||++|.|+++++|.++   +.||++|.|++++.|.                   
T Consensus        14 A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a   90 (305)
T 3t57_A           14 AVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGN---TELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHA   90 (305)
T ss_dssp             SEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSS---EEECTTCEECTTCEECCSSSEEEEECSSCEECTTC
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCC---cEECCCcEEccCcEeccCCCCceEECCceEECCcc
Confidence            456778888899999999999999999999999999998865   5666666666555553                   


Q ss_pred             ---cCCcCCC---CC------------------------ccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcE
Q 024153          108 ---VAKSNLA---GK------------------------VLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVY  156 (271)
Q Consensus       108 ---~~~~~~~---~~------------------------~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~  156 (271)
                         ...+++.   +.                        .+.+.||++|.|+.++.| ++|.||++|+|++++.+.++++
T Consensus        91 ~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~  170 (305)
T 3t57_A           91 VVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVV  170 (305)
T ss_dssp             EEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCE
T ss_pred             EeCccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCCE
Confidence               2222111   11                        234455555555555555 3477888888888888889999


Q ss_pred             ECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          157 VEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       157 Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ||++++||+++.|.++++|++++++++. +.+.+++|++.+
T Consensus       171 Igd~~~Ig~~~~V~~~v~IG~~a~ig~g-s~V~~dvp~~~~  210 (305)
T 3t57_A          171 VEDNTHTAGASVVHQFCHIGSFAFIGGG-SVVSQDVPKYMM  210 (305)
T ss_dssp             ECSSCEECTTCEECTTCEECTTCEECTT-CEECSBBCTTEE
T ss_pred             ECCceEEcCCCEEcCCeEECCCCEEcCC-CeEcccCCCCeE
Confidence            9999999999999999999999999765 999999987765

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.89  E-value=1.7e-22  Score=172.63  Aligned_cols=128  Identities=33%  Similarity=0.515  Sum_probs=116.0

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      .+.++.|+|++.|.+++.||++|.|+++++|.++   +.||++|.|+.++.|..          +++||++|.|++++.+
T Consensus        88 ~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~---~~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~~~i  154 (240)
T 3r8y_A           88 KGIKARIEPGAIIRDHVEIGDNAVIMMNATINIG---AVIGEGSMIDMNAVLGG----------RATVGKNCHVGAGAVL  154 (240)
T ss_dssp             TTCSSEECTTCEEBSSCEECTTCEECTTCEECTT---CEECTTCEECTTCEECT----------TCEECTTCEECTTCEE
T ss_pred             cCCCCEECCCCEECCCcEECCCCEECCCCEECCC---CEECCCCEECCCCEECC----------CCEECCCcEECCCcEE
Confidence            3667899999999999999999999999999766   89999999999999964          7999999999999999


Q ss_pred             ec---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          135 HG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       135 ~~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      .+         ++||++|+||.+++|.++++||++|+|+++++|.++  ||+++++.|+||++++.+++...
T Consensus       155 ~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~--vp~~~v~~G~Pak~i~~~~~~~~  224 (240)
T 3r8y_A          155 AGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED--VPPYTVVAGTPARVIKEIDEKTK  224 (240)
T ss_dssp             CCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEEC-----
T ss_pred             CCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCC--cCCCcEEEccCCEEEecCCHHHH
Confidence            77         999999999999999999999999999999999998  99999999999999998876554

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.89  E-value=5.7e-22  Score=177.86  Aligned_cols=52  Identities=13%  Similarity=0.142  Sum_probs=28.3

Q ss_pred             eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeC-CCcEEeccCceEcc
Q 024153          137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIP-CGEVWGGNPARFLR  190 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~-~~~vv~G~pa~~~~  190 (271)
                      ++||++||||+++.|.++++||++++|+++|+|.++  +| +++++.|+||+.++
T Consensus       259 v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V~~~--v~~~~~~~~G~Pa~~~~  311 (341)
T 3eh0_A          259 LKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRP--ITEPGVYSSGIPLQPNK  311 (341)
T ss_dssp             EEECTTCEECTTCEECSSEEECSSEEECTTCEECSC--BCSCEEEECCCCCEEHH
T ss_pred             cEECCCcEEcCCCEECCCCEECCCCEEeeCCEECCC--cCCCCeEEEecCchhHH
Confidence            455555555555555555555555555555555555  44 55555555555543

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.89  E-value=9.7e-23  Score=168.82  Aligned_cols=117  Identities=21%  Similarity=0.304  Sum_probs=108.9

Q ss_pred             CCEECCCcEEecCeEEC--CCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe
Q 024153           58 DVFLAPSASIIGDVQVG--RGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH  135 (271)
Q Consensus        58 ~~~I~~~~~i~~~v~IG--~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~  135 (271)
                      ...|+|++.+.+++.||  ++|.|+++++|..+   +.||++|.|+++++|.          +++.||++|+|++++.|.
T Consensus        75 ~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~---~~IG~~~~I~~~~~i~----------~~~~Ig~~~~I~~~~~i~  141 (194)
T 3bfp_A           75 VNLIHKSALISPSAIVEENAGILIMPYVVINAK---AKIEKGVILNTSSVIE----------HECVIGEFSHVSVGAKCA  141 (194)
T ss_dssp             CCEECTTCEECTTCEECTTSCCEECTTCEECTT---CEECTTCEECTTCEEC----------TTCEECTTCEECTTCEEC
T ss_pred             ccccCCeEEECCCceeCCCCCcEEcCCCEECCC---CEECCCCEECCCCEEc----------CCCEECCCCEECCCCEEC
Confidence            36788888888899999  99999999999865   8999999999999996          379999999999999998


Q ss_pred             c-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          136 G-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       136 ~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                      + ++||++|+||++++|.++++||++++|+++++|.++  +++++++.|+||+++
T Consensus       142 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~--v~~~~~~~G~Pa~~i  194 (194)
T 3bfp_A          142 GNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN--QDEKGVFVGVPAKRM  194 (194)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSCCEECCCCCCCC
T ss_pred             CCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc--cCCCCEEEeeccEEC
Confidence            8 999999999999999999999999999999999998  999999999999863

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.88  E-value=3.9e-22  Score=178.91  Aligned_cols=101  Identities=22%  Similarity=0.342  Sum_probs=73.7

Q ss_pred             eEECCCCEECCCCEEecCCcCCC---------CCccceEEcCCcEECcCcEE-----------------------eceee
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLA---------GKVLPTIIGDNVTVGHSAVL-----------------------HGCTV  139 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~---------~~~~~~~Ig~~~~i~~~~~i-----------------------~~~~I  139 (271)
                      +.||++|.|++++.|....+.+.         +..+.+.||++|.|++++.|                       +++.|
T Consensus       164 ~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~I  243 (341)
T 3eh0_A          164 IQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVI  243 (341)
T ss_dssp             CEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEE
T ss_pred             CEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEE
Confidence            45555555555555543221110         01235666666666666655                       45889


Q ss_pred             CCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153          140 EDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       140 g~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~  193 (271)
                      |++|+|+.++.+.++++||++|+||++++|.++++||++++++++ +.+.++++
T Consensus       244 G~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~-s~V~~~v~  296 (341)
T 3eh0_A          244 GDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGM-GMVMRPIT  296 (341)
T ss_dssp             CTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTT-CEECSCBC
T ss_pred             CCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeC-CEECCCcC
Confidence            999999999999999999999999999999999999999999887 67777776

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.88  E-value=6.3e-22  Score=179.37  Aligned_cols=52  Identities=13%  Similarity=0.218  Sum_probs=27.7

Q ss_pred             eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee-CCCcEEeccCceEcc
Q 024153          137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI-PCGEVWGGNPARFLR  190 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I-~~~~vv~G~pa~~~~  190 (271)
                      ++||++||||.++.|.++++||++++|+++++|.++  | |+++++.|+||+.++
T Consensus       281 v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V~k~--v~~~~~~~~G~Pa~~~~  333 (372)
T 3pmo_A          281 AKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVTRS--ITEPGSYSSGTAMQPAA  333 (372)
T ss_dssp             CEECSSCEECTTCEECSSCEECSSEEECTTCEECSC--BCSCEEECCSCCCCCHH
T ss_pred             CEECCCeEEeCCCEECCCCEECCCCEEeeCCEEccC--cCCCCcEEEeCchHHHH
Confidence            455555555555555555555555555555555554  4 555555555555443

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.88  E-value=3e-22  Score=165.34  Aligned_cols=127  Identities=23%  Similarity=0.373  Sum_probs=108.3

Q ss_pred             eECC-CCEECCCcEE--ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153           54 VVNK-DVFLAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH  130 (271)
Q Consensus        54 ~i~~-~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~  130 (271)
                      .+++ ++.|+|++.+  +.++.||+++.|+++++|. +...+.||++|.|+++|.|....+          .++.+....
T Consensus        59 ~~~~~~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~-~~~~v~IG~~~~Ig~~~~I~~~~~----------~~~~~~~~~  127 (190)
T 3hjj_A           59 SSADGKAQINPDFRCDYGYNIHVGKSFFANFNCVIL-DVCEVRIGDHCMFAPGVHIYTATH----------PLHPVERNS  127 (190)
T ss_dssp             EESSSCCEECSSCEESSSTTEEECTTCEECTTCEEE-CSSCEEECTTCEECTTCEEECEEC----------CSSHHHHTS
T ss_pred             hcCCCCcEECCCEEEEeCCceEECCceeeCCCeEEE-eCCCeEECCceEEcCCcEEecCCc----------cCchhhccc
Confidence            3777 8999998887  6789999999999999998 445699999999999999986433          333344444


Q ss_pred             CcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153          131 SAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       131 ~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~  193 (271)
                      ++.+. +++||++||||++|+|.++++||++|+||++|+|.++  ||++++++|+||+++|.++
T Consensus       128 ~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i~~~~  189 (190)
T 3hjj_A          128 GKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKD--VPNNVVVGGNPAKVIKTIE  189 (190)
T ss_dssp             SEEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             cccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            44443 4899999999999999999999999999999999998  9999999999999999875

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.88  E-value=1.5e-22  Score=183.42  Aligned_cols=132  Identities=19%  Similarity=0.276  Sum_probs=82.9

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC---------CCccceEEcCCcE
Q 024153           57 KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA---------GKVLPTIIGDNVT  127 (271)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~---------~~~~~~~Ig~~~~  127 (271)
                      +++.|+++++|++++.||++|.|+++++|.++   +.||++|.|+++++|....+.+.         ...+.+.||++|.
T Consensus       154 ~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~---~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~  230 (372)
T 3pmo_A          154 AGVSIGAHCVIGARSVIGEGGWLAPRVTLYHD---VTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVE  230 (372)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTT---EEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSCE
T ss_pred             CCCEECCCCEECCCCEECCCcccCCCcEEEee---eEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCCE
Confidence            33333333333333444444444444444332   55555666655555543221110         0012455666666


Q ss_pred             ECcCcEE-----------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEecc
Q 024153          128 VGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGN  184 (271)
Q Consensus       128 i~~~~~i-----------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~  184 (271)
                      |+++++|                       +++.||++|+|+.++.|.++++||++|+||++++|.++++|+++++++|.
T Consensus       231 IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~  310 (372)
T 3pmo_A          231 IGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGM  310 (372)
T ss_dssp             ECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTT
T ss_pred             ECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeC
Confidence            6555555                       34888888888888889999999999999999999999999999999886


Q ss_pred             CceEccCC
Q 024153          185 PARFLRKL  192 (271)
Q Consensus       185 pa~~~~~~  192 (271)
                       +.+.+++
T Consensus       311 -s~V~k~v  317 (372)
T 3pmo_A          311 -TMVTRSI  317 (372)
T ss_dssp             -CEECSCB
T ss_pred             -CEEccCc
Confidence             5566666

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.88  E-value=6.9e-22  Score=164.55  Aligned_cols=129  Identities=19%  Similarity=0.379  Sum_probs=108.5

Q ss_pred             ECCCCEECCCcE--EecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153           55 VNKDVFLAPSAS--IIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA  132 (271)
Q Consensus        55 i~~~~~I~~~~~--i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~  132 (271)
                      +++++.|.|++.  ++.++.||+++.|+++++|. +.+.++||++|.|+++|.|....|+.+.          .....+.
T Consensus        58 ig~~~~I~~~~~~~~g~~i~IG~~~~I~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~----------~~~~~~~  126 (203)
T 1krr_A           58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYTVTIGDNVLIAPNVTLSVTGHPVHH----------ELRKNGE  126 (203)
T ss_dssp             CCSSCEECSCEEESCSTTEEECSSCEECSCEEEE-CSSCEEECSSCEECSSCEEESEECCSST----------TTCTTCC
T ss_pred             cCCCcEEcCCeEEEeCCCeEECCeeEECCccEEe-cccceEECCCCEECCCCEEecCCcccch----------hhcccCc
Confidence            788889998865  46789999999999999998 4467999999999999999876553221          1122333


Q ss_pred             EE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          133 VL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       133 ~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      .+ ++++||++||||++|+|.++++||++|+||++|+|.++  ||++++++|+||++++.+++.+
T Consensus       127 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--vp~~~vv~G~PArvik~~~~~d  189 (203)
T 1krr_A          127 MYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREINDRD  189 (203)
T ss_dssp             BEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECCGGG
T ss_pred             eeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCC--cCCCcEEEccCcEEeccCChhh
Confidence            23 45999999999999999999999999999999999998  9999999999999999887644

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.88  E-value=3.3e-22  Score=166.30  Aligned_cols=129  Identities=20%  Similarity=0.293  Sum_probs=107.6

Q ss_pred             ECCCCEECCCcEE--ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153           55 VNKDVFLAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA  132 (271)
Q Consensus        55 i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~  132 (271)
                      +++++.|.+++.+  +.++.||++|.|+++++|. +.+.++||++|.|+++|.|....+..          +......+.
T Consensus        57 ~g~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~-~~~~v~IG~~v~Ig~~~~I~~~~~~~----------~~~~~~~~~  125 (199)
T 3ftt_A           57 TTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFM-DGGQITIGDNVFIGPNCGFYTATHPL----------NFHHRNEGF  125 (199)
T ss_dssp             CCSSEEECSSEEESSSTTEEECSSEEECTTEEEE-CSSCEEECSSEEECTTCEEECEECCS----------SHHHHHTTE
T ss_pred             cCCCeEEeCCEEEEecCCcEECCCeEECCCeEEe-cCCEEEECCCCEECCCCEEecCCCcC----------ccccccccc
Confidence            7788888888877  6789999999999999997 44669999999999999998654432          222222333


Q ss_pred             EE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          133 VL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       133 ~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      .+ .+++||++||||++|+|.++++||++|+||++|+|.++  ||++++++|+||++++.+++..
T Consensus       126 ~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pak~i~~~~~~~  188 (199)
T 3ftt_A          126 EKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKD--IPPHSLAVGNPCKVVRKIDNDL  188 (199)
T ss_dssp             EEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECCCCC
T ss_pred             eecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEEECCEEEeeCChhh
Confidence            33 45899999999999999999999999999999999998  9999999999999999876554

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.88  E-value=7.7e-22  Score=171.53  Aligned_cols=141  Identities=23%  Similarity=0.343  Sum_probs=95.6

Q ss_pred             hcCCCceECCCCEECCCcEEecC--------------eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC-
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGD--------------VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN-  112 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~--------------v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~-  112 (271)
                      .++..+.|++++.|++++.|++.              +.||++|.|+++++|.++   +.||+++.|++++.|.....- 
T Consensus        34 ~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~Ig~~~~I~~~~~Ig  110 (273)
T 3fs8_A           34 IIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGD---TIIGDNFQTGHKVTIRENTKIG  110 (273)
T ss_dssp             EECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESS---CEECTTCEECSSCEECSSCEEC
T ss_pred             EECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCC---CEECCCCEECCceEECCCCEEC
Confidence            44555666666666666666655              777777777777776544   344443333333333211100 


Q ss_pred             -------CCCCccceEEcCCcEECcCcEEe-----------------------------ceeeCCCcEEccCcEEccCcE
Q 024153          113 -------LAGKVLPTIIGDNVTVGHSAVLH-----------------------------GCTVEDEAFVGMGATLLDGVY  156 (271)
Q Consensus       113 -------~~~~~~~~~Ig~~~~i~~~~~i~-----------------------------~~~Ig~~~~Ig~~~~I~~~v~  156 (271)
                             .....+++.||++|.|++++.|.                             +++||++||||.+++|.++++
T Consensus       111 ~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~  190 (273)
T 3fs8_A          111 NNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIH  190 (273)
T ss_dssp             SSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCSSSSCSCCCCCEECTTCEECTTCEECTTCE
T ss_pred             CCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCCCCcccccCCcEECCCeEEcCCCEEcCCCE
Confidence                   00011245555555555554442                             489999999999999999999


Q ss_pred             ECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153          157 VEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       157 Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~  193 (271)
                      ||++|+|+++|+|.++  ||+++++.|+||++++.++
T Consensus       191 IG~~~~IgagsvV~~d--vp~~~~~~G~PA~~i~~~~  225 (273)
T 3fs8_A          191 INEDALVGAGAVVTKD--VPKETVVVGNPAREICSIR  225 (273)
T ss_dssp             ECTTCEECTTCEECSC--BCTTEEEEETTEEEEEEGG
T ss_pred             ECCCCEECCCCEECcc--CCCCcEEEecCcEEecccc
Confidence            9999999999999998  9999999999999997654

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.88  E-value=7.8e-22  Score=165.88  Aligned_cols=133  Identities=14%  Similarity=0.236  Sum_probs=116.9

Q ss_pred             CCceECCCCEECCC-cEEecC---eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCc
Q 024153           51 KAPVVNKDVFLAPS-ASIIGD---VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV  126 (271)
Q Consensus        51 ~~~~i~~~~~I~~~-~~i~~~---v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~  126 (271)
                      ..+.|++++.|.++ +.|.++   +.||++|.|++++.|.++.+.+.||++|.|++++.+...       ...++||++|
T Consensus        35 ~~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~-------~~~i~IG~~~  107 (215)
T 2wlg_A           35 NSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAE-------KGKISIGKDC  107 (215)
T ss_dssp             CEEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECT-------TCEEEECTTC
T ss_pred             CEEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeC-------CCCEEECCCC
Confidence            45788999999888 677774   999999999999999876667999999999995555421       1268999999


Q ss_pred             EECcCcEEec--------------------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe-ccC
Q 024153          127 TVGHSAVLHG--------------------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG-GNP  185 (271)
Q Consensus       127 ~i~~~~~i~~--------------------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~-G~p  185 (271)
                      .|++++.|.+                    ++||++||||++++|.++++||++|+|+++|+|.++  ||++++++ |+|
T Consensus       108 ~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~--vp~~~i~~aG~P  185 (215)
T 2wlg_A          108 MLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKS--FKEPNCVIAGSP  185 (215)
T ss_dssp             EECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSC--CCCCSCEEETTT
T ss_pred             EEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCc--cCCCeEEEcccC
Confidence            9999999964                    599999999999999999999999999999999998  99999999 999


Q ss_pred             ceEccCC
Q 024153          186 ARFLRKL  192 (271)
Q Consensus       186 a~~~~~~  192 (271)
                      |++++..
T Consensus       186 a~~i~~~  192 (215)
T 2wlg_A          186 AKIVKEN  192 (215)
T ss_dssp             TEEEECS
T ss_pred             CEEECCC
Confidence            9999764

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.88  E-value=1e-21  Score=165.71  Aligned_cols=118  Identities=27%  Similarity=0.460  Sum_probs=110.1

Q ss_pred             CCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-
Q 024153           58 DVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-  136 (271)
Q Consensus        58 ~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-  136 (271)
                      .+.++|.+.+.+++.||++|.|+++++|..+   +.||++|.|+.+++|.          +++.||++|.|++++.+.+ 
T Consensus        99 ~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~---~~IG~~~~I~~~~~I~----------~~~~Ig~~~~i~~~~~i~~~  165 (220)
T 4ea9_A           99 VNAIHPSAVVSPSVRLGEGVAVMAGVAINAD---SWIGDLAIINTGAVVD----------HDCRLGAACHLGPASALAGG  165 (220)
T ss_dssp             CCEECTTCEECTTCEECSSCEECTTCEECTT---CEECTTCEECTTCEEC----------TTCEECTTCEECTTCEECSS
T ss_pred             CCcCCCCCEECCCCEECCCCEEcCCCEECCC---CEECCCCEECCCCEEC----------CCCEECCCCEECCCCEEcCC
Confidence            3688999999999999999999999999865   8999999999999997          4799999999999999987 


Q ss_pred             eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153          137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR  190 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~  190 (271)
                      ++||++||||++++|.++++||++++|+++|+|.++  +|+++++.|+||++.+
T Consensus       166 v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~~--v~~~~~~~G~Pa~i~~  217 (220)
T 4ea9_A          166 VSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDSVLAIGVPAKIKG  217 (220)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTCEEETTTTEECC
T ss_pred             CEECCCCEECCCCEEcCCcEECCCCEECCCCEEccc--cCCCcEEEEeCCEEec
Confidence            999999999999999999999999999999999998  9999999999999443

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.88  E-value=2.3e-21  Score=174.82  Aligned_cols=56  Identities=9%  Similarity=0.138  Sum_probs=39.0

Q ss_pred             ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153          136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~  192 (271)
                      ++.||++|+|++++.|.++++||++|+||++++|.++++||++++++|+ +.+.+++
T Consensus       245 ~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~-s~V~~~v  300 (357)
T 4e79_A          245 NVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGM-SMVTKNI  300 (357)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTT-CEECSCB
T ss_pred             CeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeec-CEEcCcc
Confidence            3667777777777777777777777777777777777777777777765 3344444

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.87  E-value=2.4e-21  Score=175.89  Aligned_cols=72  Identities=18%  Similarity=0.360  Sum_probs=57.4

Q ss_pred             ceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153          119 PTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~  192 (271)
                      ++.||++|.|.+++.+. +++||++|+||.++.|.++++||++|+|+++|+|.++  ||+++++.|+||+.++.+
T Consensus       268 ~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~--v~~~~~~~G~pa~~~~~~  340 (374)
T 2iu8_A          268 QVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKS--ITSPGIYGGAPARPYQEI  340 (374)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEECSC--BCSCEEEEETTEEEHHHH
T ss_pred             ccEECCCCEEccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCceeecc--cCCCcEEeCCCCchhHHH
Confidence            33444444444444443 3889999999999999999999999999999999998  999999999999987554

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.87  E-value=4.2e-22  Score=168.21  Aligned_cols=165  Identities=17%  Similarity=0.226  Sum_probs=111.1

Q ss_pred             CceECCCCEECCCcEEe-cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecC--CcCCCCC---ccceEEcCC
Q 024153           52 APVVNKDVFLAPSASII-GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA--KSNLAGK---VLPTIIGDN  125 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~i~-~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~--~~~~~~~---~~~~~Ig~~  125 (271)
                      .+.+++++.|+++++|. .+..+.++|.|++++.|..+   +.||++|.|+++++|...  .+..+..   .+.+..+..
T Consensus        29 ~~v~~~~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~~---v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~~  105 (220)
T 4hur_A           29 PTITNENILVGEYSYYDSKRGESFEDQVLYHYEVIGDK---LIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWE  105 (220)
T ss_dssp             GGCCSTTEEECTTCEEECSSSCCGGGGEESCCTTTCCC---EEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGG
T ss_pred             ceEECCCEEECCCeEECCcCCcccCCeEEeCCCEECCC---eEECCCCEECCCCEEEECCCCcccCCcceeeeeeccccc
Confidence            34455555666665552 23344456777777776644   889999999999987421  1111110   000111111


Q ss_pred             cEEC---cCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHH
Q 024153          126 VTVG---HSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFIS  201 (271)
Q Consensus       126 ~~i~---~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~  201 (271)
                      ....   .-....+++||++||||++|+|.++++||++|+||++|+|.++  ||++++++|+||++++. ++++.++.+.
T Consensus       106 ~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d--Vp~~~vv~G~PAk~ir~r~~~~~i~~l~  183 (220)
T 4hur_A          106 KYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGNPLKFIRKRFSDGVIEEWL  183 (220)
T ss_dssp             GGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHH
T ss_pred             ccccccccccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc--CCCCcEEeCCCCEeehhcCCHHHHHHHH
Confidence            1000   0012345899999999999999999999999999999999998  99999999999999974 8888877766


Q ss_pred             HHHHHHHHHHHHHHHHhccchh
Q 024153          202 QSAINYSNLARVHAAENAKSFD  223 (271)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~  223 (271)
                      +.  .||++..+.++++.+.+.
T Consensus       184 ~~--~ww~~~~~~i~~~~~~~~  203 (220)
T 4hur_A          184 AL--QWWNLDMKIINENLPFII  203 (220)
T ss_dssp             HH--CGGGSCHHHHHHHHHHHH
T ss_pred             Hh--hhcCCCHHHHHHHHHHHh
Confidence            43  367777777777666654

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.87  E-value=4.3e-21  Score=158.13  Aligned_cols=127  Identities=22%  Similarity=0.384  Sum_probs=106.1

Q ss_pred             eECCCCEECCCcEE--ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153           54 VVNKDVFLAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS  131 (271)
Q Consensus        54 ~i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~  131 (271)
                      .+++++.|.+++.+  +.++.||+++.|+++++|. +...+.||++|.|+++|+|....|..+          ......+
T Consensus        58 ~ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~-~~~~i~IG~~~~Ig~~v~I~~~~h~~~----------~~~~~~~  126 (188)
T 3srt_A           58 SVGKQINVEQNIRCDYGYNIHVGENFFANYDCIFL-DVCKIEIGDNVMLAPNVQIYTAYHPID----------AQLRNSG  126 (188)
T ss_dssp             BCCSCEEECSCEEESSSTTEEECTTEEECTTEEEE-CSSCEEECSSCEECTTCEEECEECCSS----------HHHHHTT
T ss_pred             hcCCCCEEcCCEEEEeCCCeEECCcccccCceEEe-cCCceEECCeeEECCCcEEeeCCccCc----------hhhcccc
Confidence            47888899988887  3589999999999999998 446789999999999999986544322          1111223


Q ss_pred             cEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153          132 AVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       132 ~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~  193 (271)
                      ..+ .+++||++||||++|+|.++++||++|+||++|+|.++  ||+++++.|+||++++.++
T Consensus       127 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~vi~~i~  187 (188)
T 3srt_A          127 IEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD--IPPNTVAVGNPCRVIKKIE  187 (188)
T ss_dssp             EEEECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC--BCSSEEEETTTTEEEEECC
T ss_pred             ceECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            333 35899999999999999999999999999999999998  9999999999999999875

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.86  E-value=7.2e-22  Score=170.06  Aligned_cols=132  Identities=21%  Similarity=0.328  Sum_probs=116.2

Q ss_pred             CCCceECCCCEECCCcEE----ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCC
Q 024153           50 DKAPVVNKDVFLAPSASI----IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN  125 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i----~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (271)
                      ...+.|++++.|.+.+.+    .+.+.||++|.|.++++|.. ...+.||++|.|++++.|....       .+++||++
T Consensus        61 ~~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~-g~~v~IG~~~~Ig~~~~I~~~~-------~~~~IG~~  132 (252)
T 3jqy_B           61 NNKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATK-GSKVIIGRRTTIGAGFEVVTDK-------CNVTIGHD  132 (252)
T ss_dssp             SCEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEES-SCEEEECTTCEECTTCEEECSS-------SEEEECTT
T ss_pred             CCEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEcc-CCEEEECCCCEECCCcEEEeCC-------CCeEECCC
Confidence            456778888888777666    45689999999999999963 3569999999999999998532       26999999


Q ss_pred             cEECcCcEEec--------------------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccC
Q 024153          126 VTVGHSAVLHG--------------------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP  185 (271)
Q Consensus       126 ~~i~~~~~i~~--------------------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~p  185 (271)
                      |.|++++.|.+                    ++||++||||++|+|.++++||++|+||++|+|.++  ||+++++.|+|
T Consensus       133 ~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~--vp~~~~~~G~P  210 (252)
T 3jqy_B          133 CMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKD--VPSMCAAAGNP  210 (252)
T ss_dssp             CEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSC--BCTTEEEEETT
T ss_pred             CEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEccC
Confidence            99999999865                    599999999999999999999999999999999998  99999999999


Q ss_pred             ceEccC
Q 024153          186 ARFLRK  191 (271)
Q Consensus       186 a~~~~~  191 (271)
                      |++++.
T Consensus       211 a~~i~~  216 (252)
T 3jqy_B          211 AKIIKR  216 (252)
T ss_dssp             EEEEEE
T ss_pred             CEEEcc
Confidence            999976

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.86  E-value=6.6e-21  Score=156.18  Aligned_cols=124  Identities=26%  Similarity=0.429  Sum_probs=102.3

Q ss_pred             ECCCCEECCCcE--EecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153           55 VNKDVFLAPSAS--IIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA  132 (271)
Q Consensus        55 i~~~~~I~~~~~--i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~  132 (271)
                      ++ +++|+|++.  ++.++.||+++.|+++++|. +...++||++|.|+++|+|....|+.+..       ..   ..+.
T Consensus        56 ~g-~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~-------~~---~~~~  123 (182)
T 1ocx_A           56 VT-EAYIEPTFRCDYGYNIFLGNNFFANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPIDPV-------AR---NSGA  123 (182)
T ss_dssp             CS-SEEECSCEEESSSTTEEECSSEEECSSEEEE-CSSCEEECTTCEECTTCEEECEECCSSHH-------HH---TTTC
T ss_pred             cC-CEEEeCCEEEEeCCCEEECCCcEEeCCeEEE-eccceEEcCCcEEeCCcEEEeCCCccChh-------hc---ccCc
Confidence            56 788888854  56789999999999999997 44669999999999999998755532211       00   1122


Q ss_pred             E-EeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153          133 V-LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       133 ~-i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~  192 (271)
                      . -++++||++||||++++|.++++||++|+||++|+|.++  ||++++++|+||++++.+
T Consensus       124 ~~~~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d--ip~~~vv~G~Pa~~i~~~  182 (182)
T 1ocx_A          124 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL  182 (182)
T ss_dssp             BEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEEEC
T ss_pred             cccCCeEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc--CCCCcEEEccccEEeccC
Confidence            2 356899999999999999999999999999999999998  999999999999998753

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.86  E-value=2e-21  Score=169.23  Aligned_cols=129  Identities=23%  Similarity=0.401  Sum_probs=111.3

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-
Q 024153           57 KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-  135 (271)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-  135 (271)
                      .++.|+|++.|.+++.||++|.|+++ .+..+   +.||++|.|+.+++|..          ++.||++|.|++++.+. 
T Consensus       103 ~g~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~---~~IG~~~~I~~~~~Ig~----------~~~IG~~v~I~~~~~i~g  168 (276)
T 3gos_A          103 EGFRVVPPATVRKGAFIARNTVLMPS-YVNIG---AFVDEGTMVDTWATVGS----------CAQIGKNVHLSGGVGIGG  168 (276)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEECSE-EECTT---CEECTTCEECTTEEECT----------TCEECTTCEECTTCEECC
T ss_pred             CCcEECCCcEECCCCEECCCCEEcCC-EEcCC---eEECCCCEECCCCEECC----------CCEECCCCEECCCCEECC
Confidence            47788899999999999999999988 66644   89999999999999973          68999999999999995 


Q ss_pred             --------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCc-------------eeCCCcEE-ecc-C-------
Q 024153          136 --------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT-------------KIPCGEVW-GGN-P-------  185 (271)
Q Consensus       136 --------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~-------------~I~~~~vv-~G~-p-------  185 (271)
                              +++||++|+||++|+|.++++||++|+||++|+|.+++             .||+++++ .|+ |       
T Consensus       169 ~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv~G~~P~~~g~~~  248 (276)
T 3gos_A          169 VLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYS  248 (276)
T ss_dssp             CCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECTTSSCE
T ss_pred             ccccCCCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEECCCccCCCCccc
Confidence                    49999999999999999999999999999999999844             59999999 586 9       


Q ss_pred             ---ceEccCCCHHHHHH
Q 024153          186 ---ARFLRKLTEEEMAF  199 (271)
Q Consensus       186 ---a~~~~~~~~~~~~~  199 (271)
                         |++++++++.....
T Consensus       249 ~~~A~iik~~~~~~~~~  265 (276)
T 3gos_A          249 LYCAVIVKKVDAKTRSK  265 (276)
T ss_dssp             EEEEEEEEECCC-----
T ss_pred             ccccEEEEEcChhhhhh
Confidence               99999988776543

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.86  E-value=2.8e-22  Score=173.44  Aligned_cols=147  Identities=20%  Similarity=0.300  Sum_probs=121.1

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC--CCc-------
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--GKV-------  117 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~--~~~-------  117 (271)
                      ..+++.+.|++++.|+|++.|.+++.||++|.|+++++|.++   +.||++|.|+++++|....+++.  +..       
T Consensus        12 a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~   88 (262)
T 2qia_A           12 AIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGH---TKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGD   88 (262)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSE---EEECSSCEECTTCEEEECCSCTTCCSCCCEEEECS
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCC---cEECCCCEEecceEECcCCccccccCCccceEECC
Confidence            456778889999999999999999999999999999999865   99999999999999976544321  111       


Q ss_pred             ------------------cceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC
Q 024153          118 ------------------LPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG  178 (271)
Q Consensus       118 ------------------~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~  178 (271)
                                        +.+.||+++.|++++.+ +++.||++++|+.++.+.++++||++++||++++|.++++|+++
T Consensus        89 ~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~  168 (262)
T 2qia_A           89 RNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAH  168 (262)
T ss_dssp             SCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCC
Confidence                              23666666666666666 56888888888888888889999999999999999999999999


Q ss_pred             cEEeccCceEccCCCHHHH
Q 024153          179 EVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       179 ~vv~G~pa~~~~~~~~~~~  197 (271)
                      +++++. +.+.++++++.+
T Consensus       169 ~~ig~~-s~V~~~v~~~~~  186 (262)
T 2qia_A          169 VMVGGC-SGVAQDVPPYVI  186 (262)
T ss_dssp             CEECSS-CEECSBBCTTEE
T ss_pred             CEEccC-CEECCcCCCCeE
Confidence            999765 888888876654

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.85  E-value=5.6e-21  Score=177.27  Aligned_cols=137  Identities=22%  Similarity=0.332  Sum_probs=102.2

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEE-----------------ecCCc
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV-----------------HVAKS  111 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I-----------------~~~~~  111 (271)
                      +++.+.|++++.|+|++.|.+++.||++|.|+++++|.+    +.||++|.|+++++|                 .....
T Consensus       265 ~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~----~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~  340 (459)
T 4fce_A          265 LRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKN----CVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAE  340 (459)
T ss_dssp             EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEES----CEECTTCEECSSCEEESCEECTTCEECSSEEECTTCE
T ss_pred             EeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEec----cEECCCCEECCCcEEeCCEECCCCEECCccEECCCcE
Confidence            345567888888888888888888888888888888773    445555544444443                 21111


Q ss_pred             CCCC------------------------CccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECC
Q 024153          112 NLAG------------------------KVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEK  159 (271)
Q Consensus       112 ~~~~------------------------~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~  159 (271)
                      ..++                        ..+++.||++|.|++++.+.        +++||++||||++++|.++++||+
T Consensus       341 ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~  420 (459)
T 4fce_A          341 LAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVAN  420 (459)
T ss_dssp             ECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECT
T ss_pred             ECCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECC
Confidence            0000                        01234677777777777763        599999999999999999999999


Q ss_pred             CcEEccCcEecCCceeCCCcEEeccCceEccC
Q 024153          160 HAMVAAGALVRQNTKIPCGEVWGGNPARFLRK  191 (271)
Q Consensus       160 ~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~  191 (271)
                      +|+||++|+|+++  ||+++++.|+|+++.+.
T Consensus       421 ~~~igagsvV~~~--v~~~~~~~G~p~~~~~~  450 (459)
T 4fce_A          421 GATIGAGTTVTRD--VAENELVISRVKQVHIQ  450 (459)
T ss_dssp             TCEECTTCEECSC--BCTTCEECCCCCCCCCT
T ss_pred             CCEECCCCEEccc--cCCCCEEEecccccchh
Confidence            9999999999998  99999999999877653

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.85  E-value=6.8e-21  Score=167.80  Aligned_cols=131  Identities=17%  Similarity=0.275  Sum_probs=113.2

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      +..++.|+|++.|.+++.||++|.|+++ +|..+   +.||++|.|+.+++|..          ++.||++|.|++++.+
T Consensus       126 ~~~g~~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~---~~IG~~~~I~~~~~Ig~----------~~~IG~~v~I~~~~~i  191 (304)
T 3eg4_A          126 EKAGFRAVPNCIVRHSAYIAPNAILMPS-FVNLG---AYVDKGAMIDTWATVGS----------CAQIGKNVHLSGGVGI  191 (304)
T ss_dssp             HHHCCEECTTCEEBTTCEECTTCEECSE-EECTT---CEECTTCEECTTEEECT----------TCEECTTCEECTTCEE
T ss_pred             ccCCcEEcCCEEECCCcEECCCCEEeCC-EECCC---CEECCCcEEcCCcEECC----------CCccCCCcEECCCCEE
Confidence            4457788888888888899999999887 66644   78999999988888874          6899999999999999


Q ss_pred             ec---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCc-------------eeCCCcEEe----------
Q 024153          135 HG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT-------------KIPCGEVWG----------  182 (271)
Q Consensus       135 ~~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~-------------~I~~~~vv~----------  182 (271)
                      .+         ++||++|+||++|.|.++++||++|+||++++|.+++             .||+++++.          
T Consensus       192 ~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~kd~~  271 (304)
T 3eg4_A          192 GGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPGKNVP  271 (304)
T ss_dssp             CCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECCCCT
T ss_pred             CCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccceeeeccCEeCCCCEEecCcEecCCCC
Confidence            77         9999999999999999999999999999999998654             699999999          


Q ss_pred             ccC-------ceEccCCCHHHHHH
Q 024153          183 GNP-------ARFLRKLTEEEMAF  199 (271)
Q Consensus       183 G~p-------a~~~~~~~~~~~~~  199 (271)
                      |+|       |++++++++....+
T Consensus       272 G~P~g~~~~~A~iik~~~~~t~~~  295 (304)
T 3eg4_A          272 GENWGPSLYCAVIVKRADEKTRSK  295 (304)
T ss_dssp             TSSCCCEEEEEEEEEECCHHHHHH
T ss_pred             CCcCcccccceEEEEEccccchhh
Confidence            999       99999998776543

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.85  E-value=9.5e-21  Score=155.66  Aligned_cols=126  Identities=23%  Similarity=0.370  Sum_probs=104.0

Q ss_pred             ECCCCEECCCc--EEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153           55 VNKDVFLAPSA--SIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA  132 (271)
Q Consensus        55 i~~~~~I~~~~--~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~  132 (271)
                      +++++.|.+..  .++.++.||+++.|+++++|. +.+.++||++|.|+++|+|....|+.+...          ...+.
T Consensus        57 ~g~~~~I~~p~~~~~g~~v~IG~~~~i~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~----------~~~~~  125 (185)
T 2p2o_A           57 TGERLFIEPNFRCDYGYNIHVGENFFMNFDGVIL-DVCEVRIGDHCFIGPGVHIYTATHPLDPHE----------RNSGL  125 (185)
T ss_dssp             CCSCEEECSCEEESCSTTEEECTTEEECSSEEEE-CSSCEEECTTCEECTTCEEECEECCSSHHH----------HHTCC
T ss_pred             cCCCcEEeccEEEEecCCEEECCeeEEcCCeEEE-eccceEECCCcEEeCCCEEEcCCCcCChhh----------cccCc
Confidence            67778888864  456789999999999999998 446799999999999999987555322110          01222


Q ss_pred             E-EeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153          133 V-LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       133 ~-i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~  193 (271)
                      . -++++||++||||++|+|.++++||++|+||++|+|.++  ||++++++|+||+++|+++
T Consensus       126 ~~~~~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~--vp~~~vv~G~Pa~vi~~i~  185 (185)
T 2p2o_A          126 EYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD--VPANAVVGGNPAKVIKWLK  185 (185)
T ss_dssp             BEECCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEECC
T ss_pred             cccCCeEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEcccCEEeeecC
Confidence            2 346899999999999999999999999999999999998  9999999999999998763

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.85  E-value=3.5e-21  Score=174.83  Aligned_cols=138  Identities=17%  Similarity=0.228  Sum_probs=93.5

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC----------CCccceEEcCC
Q 024153           56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA----------GKVLPTIIGDN  125 (271)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~----------~~~~~~~Ig~~  125 (271)
                      ++++.|++++.|++++.||++|.|+++++|..+   +.||++|.|+++++|....+.+.          ...+.+.||++
T Consensus       158 G~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~  234 (374)
T 2iu8_A          158 GSACHIGSGSVIGAYSTVGEHSYIHPRVVIRER---VSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDD  234 (374)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECSS---EEECTTCEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTT
T ss_pred             CCCCEECCCcEECCCcEECCceeeCCCcEEccc---ceECCCCEECCCCEECcCCcccccccCCceeEeeeeccEEECCC
Confidence            333333333333344444444444444444322   66777777777777754322111          11236889999


Q ss_pred             cEECcCcEE-----------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153          126 VTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG  182 (271)
Q Consensus       126 ~~i~~~~~i-----------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~  182 (271)
                      |+|+++++|                       ++|+||++|+|++++.|.++++||++|+||+++.|.++++|+++++++
T Consensus       235 v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~  314 (374)
T 2iu8_A          235 VEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMM  314 (374)
T ss_dssp             CEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTEEEC
T ss_pred             CEECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEEccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEc
Confidence            999988877                       347788888888888888899999999999999999999999999996


Q ss_pred             ccCceEccCCCHHHH
Q 024153          183 GNPARFLRKLTEEEM  197 (271)
Q Consensus       183 G~pa~~~~~~~~~~~  197 (271)
                      +. +.+.+++++..+
T Consensus       315 a~-s~V~~~v~~~~~  328 (374)
T 2iu8_A          315 AQ-TGVTKSITSPGI  328 (374)
T ss_dssp             TT-CEECSCBCSCEE
T ss_pred             cC-ceeecccCCCcE
Confidence            55 888877765543

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.84  E-value=7.6e-21  Score=159.25  Aligned_cols=153  Identities=21%  Similarity=0.268  Sum_probs=112.6

Q ss_pred             ecCeEECCCCEEcc--------CcEEe-----cCCCceEECCCCEECCCCEEecCC---cCCCCC-ccceEE-c---CCc
Q 024153           68 IGDVQVGRGSSIWY--------GCVLR-----GDVNSISIGSGTNIQDNSLVHVAK---SNLAGK-VLPTII-G---DNV  126 (271)
Q Consensus        68 ~~~v~IG~~~~I~~--------~~~I~-----~~~~~~~IG~~~~I~~~~~I~~~~---~~~~~~-~~~~~I-g---~~~  126 (271)
                      .+++.||+++.|.+        .+++.     ++.+.+.||++|.|+++|+|....   |..+.. .++..+ +   +++
T Consensus        20 ~~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~   99 (212)
T 1xat_A           20 NPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFA   99 (212)
T ss_dssp             CTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGG
T ss_pred             cCCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccceeeeccccccc
Confidence            45666666666664        24442     234569999999999999985322   222110 001111 1   235


Q ss_pred             EECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHHHHH
Q 024153          127 TVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFISQSA  204 (271)
Q Consensus       127 ~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~~~~  204 (271)
                      .++.++.+.+ ++||++||||.+|+|.++++||++|+||++|+|.++  ||++++++|+||++++. +++++++.+++. 
T Consensus       100 ~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~--vp~~~~~~G~Pa~~i~~~~~~~~~~~l~~~-  176 (212)
T 1xat_A          100 GAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTIRKRFSDGDIQNLLEM-  176 (212)
T ss_dssp             GCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHHHH-
T ss_pred             ccccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--CCCCcEEEccCCEEEcccCCHHHHHHHHhh-
Confidence            5566666654 999999999999999999999999999999999998  99999999999999986 788888887765 


Q ss_pred             HHHHHHHHHHHHHhccchhh
Q 024153          205 INYSNLARVHAAENAKSFDE  224 (271)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~  224 (271)
                       .|+.+....+++....++.
T Consensus       177 -~ww~~~~~~~~~~~~~~~~  195 (212)
T 1xat_A          177 -AWWDWPLADIEAAMPLLCT  195 (212)
T ss_dssp             -CGGGSCHHHHHHSHHHHTS
T ss_pred             -ccccCCHHHHHHHHHHhhh
Confidence             4777777777777777653

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.84  E-value=1e-20  Score=167.28  Aligned_cols=129  Identities=24%  Similarity=0.391  Sum_probs=111.5

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe
Q 024153           56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH  135 (271)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~  135 (271)
                      +.++.|+|++.|.+++.||++|.|+++ .|..+   +.||++|.|+.+++|..          ++.||++|.|++++.|.
T Consensus       143 ~~~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~g---~~IG~~~~I~~~~~Ig~----------~~~IG~~v~I~~~~~I~  208 (316)
T 3tk8_A          143 AGGFRVVPPAIARRGSFIAKNVVLMPS-YTNIG---AYVDEGTMVDTWATVGS----------CAQIGKNVHLSGGVGIG  208 (316)
T ss_dssp             HHCCEECTTCEEBTTCEECTTCEECSE-EECTT---CEECTTCEECTTEEECT----------TCEECTTCEECTTCEEC
T ss_pred             cCCcEEeCCeEEeCCcEEcCCCEECCC-EEeCC---CEECCCCEEccceEECC----------CCEECCCCEEcCCCEEC
Confidence            447889999999999999999999987 55533   67999999999988874          78999999999999997


Q ss_pred             c---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCc-------------eeCCCcEE-ecc-C------
Q 024153          136 G---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT-------------KIPCGEVW-GGN-P------  185 (271)
Q Consensus       136 ~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~-------------~I~~~~vv-~G~-p------  185 (271)
                      +         ++||++|+||++|+|.++++||++|+||++|+|.+++             .||+++++ .|+ |      
T Consensus       209 ~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvVvaGsvP~~~g~~  288 (316)
T 3tk8_A          209 GVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVVAGNLPAKDGTH  288 (316)
T ss_dssp             CCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECTTSSC
T ss_pred             CCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEEECCCCcCCcccc
Confidence            6         9999999999999999999999999999999999955             69999999 586 9      


Q ss_pred             ----ceEccCCCHHHHH
Q 024153          186 ----ARFLRKLTEEEMA  198 (271)
Q Consensus       186 ----a~~~~~~~~~~~~  198 (271)
                          |++++++++....
T Consensus       289 ~~~~A~iik~~~~~t~~  305 (316)
T 3tk8_A          289 SLYCAVIVKKVDAKTRA  305 (316)
T ss_dssp             EEEEEEEEEECCC----
T ss_pred             cccceEEEEECCccchh
Confidence                9999998876543

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.84  E-value=1.8e-20  Score=169.00  Aligned_cols=143  Identities=17%  Similarity=0.247  Sum_probs=117.9

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC----------------CCceEECCCCEECCCCEEecCCc
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD----------------VNSISIGSGTNIQDNSLVHVAKS  111 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~----------------~~~~~IG~~~~I~~~~~I~~~~~  111 (271)
                      .++..+.|++++.|++++.|.+++.||++|.|+++++|..+                .+.+.||++|.|+.+++|..+..
T Consensus       146 ~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~  225 (357)
T 4e79_A          146 KLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGAL  225 (357)
T ss_dssp             EECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCSS
T ss_pred             EECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcCCcEEccccEEecccc
Confidence            34445666777777788888899999999999999999653                24699999999999999975532


Q ss_pred             CCC------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee-CC
Q 024153          112 NLA------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI-PC  177 (271)
Q Consensus       112 ~~~------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I-~~  177 (271)
                      ...            ...+++.||++|.|+.++.+.+ ++||++||||+++.|.++++||++++|+++++|.++  + |+
T Consensus       226 ~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V~~~--v~~~  303 (357)
T 4e79_A          226 DNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTKN--ISEA  303 (357)
T ss_dssp             SCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCEECSC--BCSC
T ss_pred             CCccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCEEcCc--cCCC
Confidence            110            1246777777777777777765 999999999999999999999999999999999998  8 99


Q ss_pred             CcEEeccCceEccCC
Q 024153          178 GEVWGGNPARFLRKL  192 (271)
Q Consensus       178 ~~vv~G~pa~~~~~~  192 (271)
                      ++++.|+||+.++.+
T Consensus       304 ~~~~~G~Pa~~~~~~  318 (357)
T 4e79_A          304 GTYSSGTGLFENNHW  318 (357)
T ss_dssp             EEEECSCCCEEHHHH
T ss_pred             CcEEEeCchHHHHHH
Confidence            999999999987653

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.84  E-value=1.5e-20  Score=174.22  Aligned_cols=141  Identities=24%  Similarity=0.301  Sum_probs=106.6

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEec----CC---------CceEECCCCEECCCCEEecCCcCCC-
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRG----DV---------NSISIGSGTNIQDNSLVHVAKSNLA-  114 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~----~~---------~~~~IG~~~~I~~~~~I~~~~~~~~-  114 (271)
                      +++.+.|++++.|++++.|.+++.||++|.|++++.|..    +.         ..+.||++|.|++++.|.......+ 
T Consensus       262 i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~  341 (456)
T 2v0h_A          262 LRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAE  341 (456)
T ss_dssp             EEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTT
T ss_pred             EcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCC
Confidence            445678889999999999999999999999988888851    00         0122334444444444332211000 


Q ss_pred             ----------------C-------CccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153          115 ----------------G-------KVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus       115 ----------------~-------~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                                      +       ..+++.||++|+||+++.+.        +++||++||||++++|.++++||++++|
T Consensus       342 ~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~i  421 (456)
T 2v0h_A          342 THVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATI  421 (456)
T ss_dssp             CEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEE
T ss_pred             CEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEE
Confidence                            0       01346899999999999884        6999999999999999999999999999


Q ss_pred             ccCcEecCCceeCCCcEEeccCceEccC
Q 024153          164 AAGALVRQNTKIPCGEVWGGNPARFLRK  191 (271)
Q Consensus       164 g~~svV~~~~~I~~~~vv~G~pa~~~~~  191 (271)
                      |++|+|.++  ||+++++.|+||++++.
T Consensus       422 g~~s~v~~~--v~~~~~~~G~pa~~~~~  447 (456)
T 2v0h_A          422 GAGTTITRD--VGENELVITRVAQRHIQ  447 (456)
T ss_dssp             CTTCEECSC--BCTTCEECCCCCCCCCT
T ss_pred             CCCCEECCC--cCCCCEEEccCceehhh
Confidence            999999998  99999999999999864

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.84  E-value=7e-21  Score=159.77  Aligned_cols=129  Identities=19%  Similarity=0.255  Sum_probs=89.3

Q ss_pred             ceEECCCCEECCCCEEecCC---cCCCCC--ccceEE--cCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcE
Q 024153           91 SISIGSGTNIQDNSLVHVAK---SNLAGK--VLPTII--GDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAM  162 (271)
Q Consensus        91 ~~~IG~~~~I~~~~~I~~~~---~~~~~~--~~~~~I--g~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~  162 (271)
                      .+.||++|.|+++|+|....   +..+..  ...+.+  ++++.+..++.+. +++||++||||++|+|.++++||++|+
T Consensus        58 ~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~i  137 (212)
T 3eev_A           58 KLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAI  137 (212)
T ss_dssp             CEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGGTTCCCCCCCCCCEEECSSCEECTTCEECTTCEECTTCE
T ss_pred             CcEECCCCEECCCCEEEeCCCCcccccceeeccceeecccccccccCCcccCCCeEECCCCEECCCCEEcCCCEECCCCE
Confidence            48888888888888875432   211100  000001  1222333444343 499999999999999999999999999


Q ss_pred             EccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 024153          163 VAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFISQSAINYSNLARVHAAENAKSFD  223 (271)
Q Consensus       163 Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (271)
                      ||++|+|.++  ||++++++|+||++++. +++..++.+.+..  ||.+....+++..+.++
T Consensus       138 IgagsvV~~d--Vp~~~vv~G~PAk~i~~~~~~~~~~~l~~~~--ww~~~~~~i~~~~~~~~  195 (212)
T 3eev_A          138 IASRSVVTKD--VAPYEVVGSNPAKHIKFRFSDVEIAMLLEMA--WWNWPESWLKESMQSLC  195 (212)
T ss_dssp             ECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHHHHC--GGGSCHHHHHHTHHHHS
T ss_pred             ECCCCEEccc--cCCCcEEEecCCEEEeccCCHHHHHHHHhcc--ccCCCHHHHHHHHHHHh
Confidence            9999999998  99999999999999985 7777777766432  34444444555555443

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.84  E-value=3.5e-20  Score=169.23  Aligned_cols=132  Identities=17%  Similarity=0.205  Sum_probs=116.2

Q ss_pred             CCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEEC
Q 024153           50 DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVG  129 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~  129 (271)
                      .+.+.|++++.|++++.|.+++.||++|.|+++++|.++   +.||++|.|+++|.|.           ++.||+++.|+
T Consensus       242 ~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~ig~~~~i~-----------~~~i~~~~~i~  307 (401)
T 2ggo_A          242 KGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPY---TILVEKNKIGASVEVK-----------ESVIMEGSKIP  307 (401)
T ss_dssp             ESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTT---EEECSSCEEEETCEEE-----------SEEECTTCEEE
T ss_pred             cCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCC---cEECCCCEECCCCEEe-----------cCEEcCCcEEC
Confidence            455678888999999999999999999999999999865   9999999999999995           68899999999


Q ss_pred             cCcEEeceeeCCCcEEccCcEEc------------------------cCcEECCCcEEccCcEecCCceeCCCcEEeccC
Q 024153          130 HSAVLHGCTVEDEAFVGMGATLL------------------------DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP  185 (271)
Q Consensus       130 ~~~~i~~~~Ig~~~~Ig~~~~I~------------------------~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~p  185 (271)
                      +++.+.+++||++|+||+++.|.                        .+++||++|+||++++|.++++|++++++++ .
T Consensus       308 ~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~-g  386 (401)
T 2ggo_A          308 HLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYP-G  386 (401)
T ss_dssp             ESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECT-T
T ss_pred             CCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECC-C
Confidence            99999999999999999999987                        4799999999999999999999999999854 4


Q ss_pred             ceEccCCCHHH
Q 024153          186 ARFLRKLTEEE  196 (271)
Q Consensus       186 a~~~~~~~~~~  196 (271)
                      +.+.+++++..
T Consensus       387 svv~~~vp~~~  397 (401)
T 2ggo_A          387 AVVNRDVGYGE  397 (401)
T ss_dssp             CEECSCBCTTC
T ss_pred             CeEccccCCCc
Confidence            88888887643

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.83  E-value=9.5e-21  Score=159.43  Aligned_cols=162  Identities=17%  Similarity=0.249  Sum_probs=111.3

Q ss_pred             ECCCCEECCCcEEecC--eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecC--CcCCCCCc-cceEEcCC----
Q 024153           55 VNKDVFLAPSASIIGD--VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA--KSNLAGKV-LPTIIGDN----  125 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~--v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~--~~~~~~~~-~~~~Ig~~----  125 (271)
                      +++++.|+++++|.+.  +.+ +++.+++++.+.   ..+.||++|.|+++|+|...  .|...+.. ..+.++.+    
T Consensus        31 ~~~~i~IG~~t~i~~~~~~~~-~~~vi~~~~~i~---~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~  106 (219)
T 4e8l_A           31 TNENILVGEYSYYDSKRGESF-EDQVLYHYEVIG---DKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKY  106 (219)
T ss_dssp             CSSSEEECTTCEEECSSSCCG-GGGEESCCTTTC---CCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGG
T ss_pred             ECCCEEECCccEEcCCcCcee-cceEEeecceeC---CCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCccccc
Confidence            3444444444444432  223 345555555544   34999999999999999743  22111100 00112222    


Q ss_pred             cEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHHHH
Q 024153          126 VTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFISQS  203 (271)
Q Consensus       126 ~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~~~  203 (271)
                      +.+..+..+ .+++||++||||++++|.++++||++|+|+++|+|.++  ||+++++.|+||++++. +++..+..+.+.
T Consensus       107 ~~~~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~d--v~~~~~~~G~Pa~~i~~r~~~~~i~~l~~~  184 (219)
T 4e8l_A          107 MPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGNPLKFIRKRFSDGVIEEWLAL  184 (219)
T ss_dssp             CCCTTTSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHHHH
T ss_pred             ccccccccccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCeEEEecCCEeecccCCHHHHHHHHhh
Confidence            233333433 45999999999999999999999999999999999998  99999999999999985 777887776643


Q ss_pred             HHHHHHHHHHHHHHhccchhh
Q 024153          204 AINYSNLARVHAAENAKSFDE  224 (271)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~  224 (271)
                        .||.+..+.+++....+..
T Consensus       185 --~ww~~~~~~i~~~~~~~~~  203 (219)
T 4e8l_A          185 --QWWNLDMKIINENLPFIIN  203 (219)
T ss_dssp             --CGGGSCHHHHHTTHHHHHT
T ss_pred             --hhhCCCHHHHHHHHHHHhh
Confidence              4677777777777776643

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.83  E-value=9.7e-20  Score=150.23  Aligned_cols=129  Identities=20%  Similarity=0.286  Sum_probs=114.2

Q ss_pred             CCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe
Q 024153           56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH  135 (271)
Q Consensus        56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~  135 (271)
                      |++++|+|++.|.+++.||+++.|+++++|.++   +.||++|.|++++.|..          +++||++|.|++++.|.
T Consensus         1 G~~~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~---~~IG~~~~Ig~~~~I~~----------~~~IG~~~~I~~~~~I~   67 (192)
T 3mqg_A            1 GHMATIHPTAIVDEGARIGAHSRIWHWVHICGG---AEIGEGCSLGQNVFVGN----------RVRIGNRVKIQNNVSVY   67 (192)
T ss_dssp             --CCEECTTCEECTTCEECTTCEECTTCEECTT---CEECTTCEECTTCEECS----------SCEECSSCEECTTCEEC
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEECCC---cEECCCCEECCCEEECC----------ceEECCCcEEcCCcEEe
Confidence            467899999999999999999999999999866   89999999999999963          69999999999999994


Q ss_pred             -ceeeCCCcEEccCcEEc---------------cCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          136 -GCTVEDEAFVGMGATLL---------------DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       136 -~~~Ig~~~~Ig~~~~I~---------------~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                       +++||++|+|++++.+.               ..++||++|+||++++|.++++|+++++++ ..+.+.+++++..+.
T Consensus        68 ~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~Ig-agsvV~~~vp~~~v~  145 (192)
T 3mqg_A           68 DNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVG-AGAVVNKDVPDFALV  145 (192)
T ss_dssp             TTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEEC-TTCEECSCBCTTEEE
T ss_pred             CCCEECCCCEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEc-CCCEECcccCCCCEE
Confidence             59999999999998875               568999999999999999999999999985 458888998876653

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.82  E-value=2.4e-19  Score=166.88  Aligned_cols=142  Identities=17%  Similarity=0.292  Sum_probs=108.7

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC----C--------CceEECCCCEECCCCEEecCCcCCC-
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD----V--------NSISIGSGTNIQDNSLVHVAKSNLA-  114 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~----~--------~~~~IG~~~~I~~~~~I~~~~~~~~-  114 (271)
                      .+++.+.|++++.|++++.|.+++.||++|.|+++++|.+.    .        ..+.||++|.|++++.|.....-.. 
T Consensus       270 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~  349 (468)
T 1hm9_A          270 YIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQ  349 (468)
T ss_dssp             EECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTT
T ss_pred             EECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCc
Confidence            35667788888899999988888999998888888877521    0        0135555556665555542211000 


Q ss_pred             ----------------C-------CccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153          115 ----------------G-------KVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus       115 ----------------~-------~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                                      +       ..+++.||++|.|++++.+.        +++||++||||++++|.++++||++++|
T Consensus       350 ~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i  429 (468)
T 1hm9_A          350 VHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLV  429 (468)
T ss_dssp             CEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEE
T ss_pred             cEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEE
Confidence                            0       01346788888899888885        4999999999999999999999999999


Q ss_pred             ccCcEecCCceeCCCcEEeccCceEccC
Q 024153          164 AAGALVRQNTKIPCGEVWGGNPARFLRK  191 (271)
Q Consensus       164 g~~svV~~~~~I~~~~vv~G~pa~~~~~  191 (271)
                      +++|+|.++  ||+++++.|+||++++.
T Consensus       430 ~~~s~v~~~--v~~~~~~~G~pa~~~~~  455 (468)
T 1hm9_A          430 GAGSTITKD--VPADAIAIGRGRQINKD  455 (468)
T ss_dssp             CTTCEECSC--BCTTCEECCSCCCCCCT
T ss_pred             CCCCEECCC--CCCCCEEEcCcceeehh
Confidence            999999998  99999999999998753

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.80  E-value=1.3e-18  Score=151.18  Aligned_cols=150  Identities=19%  Similarity=0.227  Sum_probs=116.2

Q ss_pred             hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC-----------CCceEECCCCEECCCCEEecCCcCCCC
Q 024153           47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD-----------VNSISIGSGTNIQDNSLVHVAKSNLAG  115 (271)
Q Consensus        47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~-----------~~~~~IG~~~~I~~~~~I~~~~~~~~~  115 (271)
                      ..+++.+.|++++.|++++.|++++.||++|.|+++++|...           ...+.||++|.|+++++|.....-.+.
T Consensus        15 a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig~~   94 (273)
T 3fs8_A           15 VIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIGDN   94 (273)
T ss_dssp             CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEECTT
T ss_pred             cEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEECCC
Confidence            456778889999999999999999999999999999999864           234899999999999998654321110


Q ss_pred             --------CccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEcc----------------------------CcEEC
Q 024153          116 --------KVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLD----------------------------GVYVE  158 (271)
Q Consensus       116 --------~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~----------------------------~v~Ig  158 (271)
                              ...++.||+++.|+.++.+. ++.||++|+|+.++.|..                            +++||
T Consensus        95 ~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig  174 (273)
T 3fs8_A           95 FQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIE  174 (273)
T ss_dssp             CEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCSSSSCSCCCCCEEC
T ss_pred             CEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCCCCcccccCCcEEC
Confidence                    11345555555555555553 477777777777777653                            57899


Q ss_pred             CCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          159 KHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       159 ~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ++|+||++++|.++++|++++++++ .+.+.+++|+..+
T Consensus       175 ~~~~IG~~~~I~~g~~IG~~~~Iga-gsvV~~dvp~~~~  212 (273)
T 3fs8_A          175 LFAVIAARSVVLPGIHINEDALVGA-GAVVTKDVPKETV  212 (273)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECT-TCEECSCBCTTEE
T ss_pred             CCeEEcCCCEEcCCCEECCCCEECC-CCEECccCCCCcE
Confidence            9999999999999999999999864 4999999998775

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.80  E-value=9.2e-20  Score=152.49  Aligned_cols=160  Identities=15%  Similarity=0.241  Sum_probs=107.4

Q ss_pred             CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecC--CcCCCCC-ccceEEcCC--
Q 024153           51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA--KSNLAGK-VLPTIIGDN--  125 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~--~~~~~~~-~~~~~Ig~~--  125 (271)
                      +.+.||++++|+++..    +.+ +++.+..++.+.+   .+.||++|.|+++|+|...  .+...+. ...+.++.+  
T Consensus        28 ~~i~IG~~~~I~~~~~----~~i-~~~~i~~~~~i~~---~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~   99 (209)
T 1mr7_A           28 ENVEVGEYSYYDSKNG----ETF-DKQILYHYPILND---KLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWE   99 (209)
T ss_dssp             TTEEECTTCEEECSSS----CCG-GGGEESCCGGGCC---CEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGG
T ss_pred             CCeEECCCcEEcCCCc----eEE-eceEEeeccccCC---CEEECCCCEEcCCCEEEeCCCcccccCccccceEECCccc
Confidence            4444555555444311    334 5666666665543   3899999999999988532  2222110 011122222  


Q ss_pred             --cEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHH
Q 024153          126 --VTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFIS  201 (271)
Q Consensus       126 --~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~  201 (271)
                        +.+..++.+ ++++||++|+||++++|.++++||++++|+++|+|.++  ||++++++|+||++++. ++++.++.++
T Consensus       100 ~~~~i~~~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~--v~~~~i~~G~Pa~~i~~~~~~~~~~~l~  177 (209)
T 1mr7_A          100 KHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGNPANEIKQRFDQDTINQLL  177 (209)
T ss_dssp             GGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEESSCHHHHHHHH
T ss_pred             ccccccccccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCC--CCCCeEEEeeCCEEeeccCCHHHHHHHH
Confidence              223333333 45999999999999999999999999999999999998  99999999999999986 7777777765


Q ss_pred             HHHHHHHHHHHHHHHHhccch
Q 024153          202 QSAINYSNLARVHAAENAKSF  222 (271)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~  222 (271)
                      +.  .||.+..+.+++....+
T Consensus       178 ~~--~ww~~~~~~i~~~~~~~  196 (209)
T 1mr7_A          178 DI--KWWNWPIDIINENIDKI  196 (209)
T ss_dssp             HH--CGGGSCHHHHHHTHHHH
T ss_pred             hh--hhhcCCHHHHHHHHHHH
Confidence            43  35566555555444444

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.80  E-value=6.3e-19  Score=160.91  Aligned_cols=117  Identities=20%  Similarity=0.325  Sum_probs=102.1

Q ss_pred             cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEE
Q 024153           49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTV  128 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i  128 (271)
                      +...+.|++++.|++++.|.+++.||++|.|++++.|. +   +.||+++.|++++.|.           ++.||++|.|
T Consensus       259 i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~-~---~~i~~~~~i~~~~~i~-----------~~~Ig~~~~I  323 (401)
T 2ggo_A          259 IEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVK-E---SVIMEGSKIPHLSYVG-----------DSVIAEDVNF  323 (401)
T ss_dssp             EESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEE-S---EEECTTCEEEESCEEE-----------SCEECTTCEE
T ss_pred             EeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEe-c---CEEcCCcEECCCceEc-----------ceEECCCcEE
Confidence            33455677777888888888888888888888888884 3   7899999999998886           6899999999


Q ss_pred             CcCcEEe-------------------------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153          129 GHSAVLH-------------------------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG  182 (271)
Q Consensus       129 ~~~~~i~-------------------------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~  182 (271)
                      ++++.+.                         +++||++||||++++|.++++||++++|+++|+|.++  ||+++++.
T Consensus       324 g~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~--vp~~~~v~  400 (401)
T 2ggo_A          324 GAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD--VGYGEFFK  400 (401)
T ss_dssp             CTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTCEEC
T ss_pred             CCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccc--cCCCcEEe
Confidence            9999986                         6999999999999999999999999999999999998  99999874

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.79  E-value=6.8e-19  Score=163.91  Aligned_cols=119  Identities=18%  Similarity=0.292  Sum_probs=110.0

Q ss_pred             CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153           51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH  130 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~  130 (271)
                      ..+.++++++|+|++.+.+++.||++|.|++++.| +   .+.||++|.|+++|+|.           +++||++|.|++
T Consensus       272 ~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~---~v~IG~~~~I~~~~~I~-----------~~vIG~~~~Ig~  336 (496)
T 3c8v_A          272 SGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-D---NAWMGKGSNAQENCYII-----------NSRLERNCVTAH  336 (496)
T ss_dssp             ----CCTTCEECTTSEEESSCEECTTCEECTTCEE-E---EEEECTTCEECTTCEEE-----------EEEEEESCEECT
T ss_pred             cCcccCCCcEECCCcEEeCCeEECCCCEECCCcEE-e---ceEecCCCEECCCceEe-----------ceEeCCCCEECC
Confidence            45678999999999999999999999999999999 3   38999999999999998           699999999999


Q ss_pred             CcEEeceeeCCCcEEccCcEEccC----cEECCCcEEccCcEec--CCceeCCCcEEecc
Q 024153          131 SAVLHGCTVEDEAFVGMGATLLDG----VYVEKHAMVAAGALVR--QNTKIPCGEVWGGN  184 (271)
Q Consensus       131 ~~~i~~~~Ig~~~~Ig~~~~I~~~----v~Ig~~~~Ig~~svV~--~~~~I~~~~vv~G~  184 (271)
                      ++.+++++||++|+||++|+|.++    ++||++|+||++|+|.  .+..||+++++.|+
T Consensus       337 ~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G~  396 (496)
T 3c8v_A          337 GGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGY  396 (496)
T ss_dssp             TCEEESEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEECSE
T ss_pred             CcEEcCceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEEEEE
Confidence            999999999999999999999999    9999999999999999  77889999999876

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.77  E-value=1e-18  Score=153.78  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=47.1

Q ss_pred             EcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe--ccCceEccCCCHHH
Q 024153          122 IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG--GNPARFLRKLTEEE  196 (271)
Q Consensus       122 Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~--G~pa~~~~~~~~~~  196 (271)
                      +++++.+..++. ..++||++|+||++|+|.++++||++|+||++|+|.++  ||+++++.  |+||++++++++..
T Consensus       210 ig~~~~i~~~~~-~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d--Vp~gs~vvi~G~PAkvik~~~~~~  283 (313)
T 3q1x_A          210 QEEGGVIKRGTK-RHPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWIDRD--VDSNQTVYISEHPTHFVKPCTTKG  283 (313)
T ss_dssp             CCTTCCCCCCSS-CSCEECSSCEECTTCEEESSCEECSSEEECTTCEECSC--BCSSEEC-----------------
T ss_pred             ECCCceEcCCCc-cCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCC--cCCCCEEEEcCCCcEEEeeCcccc
Confidence            344444433332 23699999999999999999999999999999999998  99999987  99999999887654

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.75  E-value=1.5e-18  Score=150.84  Aligned_cols=122  Identities=19%  Similarity=0.308  Sum_probs=99.0

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV  133 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~  133 (271)
                      .+++++.|+|++.|..++.||+++.|+++++|.-+   ..|+++|.|...+.            .+++||++|.|++++.
T Consensus       157 vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVnig---a~Ig~g~~In~~i~------------iGv~IGd~v~IgpGa~  221 (332)
T 3fsy_A          157 VVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYN---AGTLGASMVEGRIS------------AGVVVGDGSDVGGGAS  221 (332)
T ss_dssp             CCCTTCEESCGGGBBTTEEECTTCEECTTCEECTT---EEESSCCEECSEEC------------TTCEECTTCEECTTCE
T ss_pred             ecCCCcEECCcCEECCCCEECCCCEEccccEEEEC---CeECcCCEECCcee------------cceEECCCCEECCCCE
Confidence            47788999999999999999999999999988643   66777777654422            1489999999999999


Q ss_pred             Eec---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee--------CCCcEEeccCceEccCC
Q 024153          134 LHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI--------PCGEVWGGNPARFLRKL  192 (271)
Q Consensus       134 i~~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I--------~~~~vv~G~pa~~~~~~  192 (271)
                      |.+         ++||++|+||++++|  +++||++|+||+||+|.+++.|        +++.+++++|+.+.++-
T Consensus       222 IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~~~~g~~v~a~el~g~~~~~f~r~s  295 (332)
T 3fsy_A          222 IMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVTMPDSNSVKARELSGSSNLLFRRNS  295 (332)
T ss_dssp             ECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEECTTSCEEEGGGGTTCSSEEEEECT
T ss_pred             EcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEeCCCCEEEhHHhcCCCCCEEEecC
Confidence            965         999999999999999  8999999999999999998654        33444456677776543

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.75  E-value=9.5e-18  Score=157.67  Aligned_cols=115  Identities=22%  Similarity=0.351  Sum_probs=83.5

Q ss_pred             ECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-----
Q 024153           61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-----  135 (271)
Q Consensus        61 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-----  135 (271)
                      ++|++.+.+++.|++++.|+.++.+..    ..||++|.|++.+.+.           ++.||++|.||+++++.     
T Consensus       343 ig~~~~i~~~~~i~~~v~IG~~v~ik~----s~Ig~gskI~~~~~i~-----------d~~Ig~~v~IG~g~i~~n~dg~  407 (501)
T 3st8_A          343 VGPFTYLRPGTALGADGKLGAFVEVKN----STIGTGTKVPHLTYVG-----------DADIGEYSNIGASSVFVNYDGT  407 (501)
T ss_dssp             ECSSEEECTTCEECTTCEEEETEEEES----CEECTTCEEEESCEEE-----------SEEECSSCEECTTCEEECBCSS
T ss_pred             cCCceeecCCcEEccccccCCeEEEcc----ceecCCcEEeccceec-----------CceEcCCCEECCCEEEEcccCC
Confidence            333333333444444444444444331    3455555555555444           78999999999999884     


Q ss_pred             ---ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcE-EeccCceEccCC
Q 024153          136 ---GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV-WGGNPARFLRKL  192 (271)
Q Consensus       136 ---~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~v-v~G~pa~~~~~~  192 (271)
                         .++|||+|+||.++.|.++++||++|+||++|+|++|  ||++++ +++.|++.++.|
T Consensus       408 ~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~d--vp~~~l~~~~~~~~~~~~w  466 (501)
T 3st8_A          408 SKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVRED--VPPGALAVSAGPQRNIENW  466 (501)
T ss_dssp             SBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSC--BCTTCEECCCCCCCCCTTH
T ss_pred             cccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcc--cCCCCeEEeccCceeccch
Confidence               3999999999999999999999999999999999999  999997 556888877654

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.74  E-value=1.8e-17  Score=137.98  Aligned_cols=116  Identities=21%  Similarity=0.228  Sum_probs=101.7

Q ss_pred             CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE----eceeeCCCcEE
Q 024153           70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL----HGCTVEDEAFV  145 (271)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i----~~~~Ig~~~~I  145 (271)
                      ...||+++.|++++.|.+ ..++.||++|.|+++|.|..          +++||++|.|++++.|    ++++||++|+|
T Consensus        32 ~~~ig~~~~I~~~~~i~~-~~~v~IG~~~~I~~~~~I~~----------~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I  100 (205)
T 3vbi_A           32 FLSVGKNVLISKKASIYN-PGVISIGNNVRIDDFCILSG----------KVTIGSYSHIAAYTALYGGEVGIEMYDFANI  100 (205)
T ss_dssp             CSEECSSEEEBTTSEEES-GGGEEECSSEEECTTCEEEE----------EEEECSSEEECTTCEEEEEEEEEEECTTCEE
T ss_pred             CeEECCCCEECCCeEEcc-CCeeEECCCCEECCCCEEcc----------ceEECCCCEECCCeEEEcCCccEEECCCCEE
Confidence            456778888888888874 24599999999999999974          7999999999999999    44999999999


Q ss_pred             ccCcEE-------------------------ccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          146 GMGATL-------------------------LDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       146 g~~~~I-------------------------~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ++++.|                         .++++||++|+||++++|.++++|+++++++ ..+.+.+++++..+
T Consensus       101 g~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig-~gsvV~~~v~~~~v  176 (205)
T 3vbi_A          101 SSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVG-AMSMVKESLDDWYI  176 (205)
T ss_dssp             CTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEEC-TTCEECSCBCTTEE
T ss_pred             CCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEc-CCCEECCccCCCeE
Confidence            999999                         5889999999999999999999999999985 55888888887665

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.74  E-value=1.8e-17  Score=143.92  Aligned_cols=58  Identities=24%  Similarity=0.432  Sum_probs=53.5

Q ss_pred             ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHH
Q 024153          136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEE  195 (271)
Q Consensus       136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~  195 (271)
                      .++||++|+||++++|.++++||++|+||++|+|.++  ||+++++.|+||++++...+.
T Consensus       216 ~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~kd--Vp~~svvvG~PAkii~~~~~~  273 (287)
T 3mc4_A          216 HPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKS--VPHNVTVAGVPARIIGETGCT  273 (287)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC--
T ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCCEEccc--cCCCCEEEccCCEEeCcCCCc
Confidence            4799999999999999999999999999999999998  999999999999999877643

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.74  E-value=3.7e-18  Score=149.42  Aligned_cols=106  Identities=19%  Similarity=0.295  Sum_probs=94.3

Q ss_pred             ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153           53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA  132 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~  132 (271)
                      ..+++++.|+|.+.|..++.||+++.|++++.|..+   +.||++|.|+.++.+            .+.||++|.|++++
T Consensus       179 ~vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~n---a~IGdg~iI~~~a~i------------gv~IGdnv~IgpGa  243 (347)
T 3r5d_A          179 YVVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFN---AGTEGPGMIEGRVSA------------GVFVGKGSDLGGGC  243 (347)
T ss_dssp             TCCCTTEEESSGGGBBTTEEECTTEEECTTCEECTT---EEESSSEEECSEECT------------TCEECTTEEECTTC
T ss_pred             eeccCCcEECCcCEECCCCEECCCCEECCCCEECCC---CEECCCcEEcCCceE------------eEEECCCCEECCCC
Confidence            347788999999999999999999999999988755   778888888776543            38999999999999


Q ss_pred             EEec---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee
Q 024153          133 VLHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI  175 (271)
Q Consensus       133 ~i~~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I  175 (271)
                      .|.+         ++||++|+||++++|  +++||++|+||+|++|.+++.|
T Consensus       244 ~IgG~~~~~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          244 STMGTLSGGGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             EECC------CCCCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTCEE
T ss_pred             EEccccCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence            9976         899999999999999  8999999999999999999877

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.71  E-value=4.3e-17  Score=143.23  Aligned_cols=58  Identities=24%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCH
Q 024153          135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE  194 (271)
Q Consensus       135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~  194 (271)
                      ..++||++|+||++|+|.++++||++|+||++|+|.++  ||+++++.|+||+..+...+
T Consensus       250 ~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~d--Vp~~svv~GnPAk~~~~~~~  307 (310)
T 3f1x_A          250 RHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTEN--VPAGSRIVQRKNKDELEHHH  307 (310)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECSSCEECSC--BCTTCEECCCCCC-------
T ss_pred             CCCEECCCcEEcCCCEECCCcEECCCCEECCCCEECCc--cCCCcEEECCCcccCCcccc
Confidence            34799999999999999999999999999999999998  99999999999998876543

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.71  E-value=7.8e-17  Score=135.02  Aligned_cols=120  Identities=23%  Similarity=0.348  Sum_probs=104.2

Q ss_pred             hcCCCceECCCCEECCCcEEec----CeEECCCCEEccCcEEecCCC-----------ceEECCCCEECCCCEEecCCcC
Q 024153           48 IFDKAPVVNKDVFLAPSASIIG----DVQVGRGSSIWYGCVLRGDVN-----------SISIGSGTNIQDNSLVHVAKSN  112 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~-----------~~~IG~~~~I~~~~~I~~~~~~  112 (271)
                      .+...+.|++++.|++++.|.+    .+.||++|.|+++++|.+...           .+.||++|.|++++.|..    
T Consensus        53 ~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~----  128 (213)
T 3kwd_A           53 NLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHG----  128 (213)
T ss_dssp             EEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEE----
T ss_pred             EEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcC----
Confidence            3445678889999999999975    489999999999999985321           389999999999999984    


Q ss_pred             CCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcE
Q 024153          113 LAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV  180 (271)
Q Consensus       113 ~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~v  180 (271)
                            +++||++|+|+.++.|.+++||++|+||++++| .+++|++++.|+++++|.++  .|+..+
T Consensus       129 ------~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V-~~~~i~~~~~v~~~~vv~~g--~pa~~i  187 (213)
T 3kwd_A          129 ------PAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI-QDVEIPPGKYVPSGMVITTQ--QQADRL  187 (213)
T ss_dssp             ------EEEECTTCEECTTCEEEEEEECTTCEECSSCEE-ESCEECTTBEECTTCEECSH--HHHTTC
T ss_pred             ------CCEECCCCEECCCCEEeCcEECCCCEEcCCCEE-CCcEeCCCCEECCCcEEcCC--CCcccc
Confidence                  699999999999999999999999999999999 58999999999999999876  665544

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.71  E-value=5.2e-17  Score=141.28  Aligned_cols=57  Identities=28%  Similarity=0.453  Sum_probs=53.5

Q ss_pred             eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153          135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~  193 (271)
                      ..++||++|+||++++|.++++||++|+||++|+|.++  ||+++++.|+||++++...
T Consensus       208 ~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d--Vp~~s~v~G~PAr~i~~~~  264 (289)
T 1t3d_A          208 RHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAGVPARIVGKPD  264 (289)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEETTTTEEEECCS
T ss_pred             CCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccC--CCCCCEEEecCCEEeCcCC
Confidence            35799999999999999999999999999999999998  9999999999999998654

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.70  E-value=1.1e-16  Score=138.05  Aligned_cols=56  Identities=27%  Similarity=0.380  Sum_probs=51.3

Q ss_pred             ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153          136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~  193 (271)
                      +++||++|+||++++|.++++||++|+||++|+|.++  ||+++++.|+||++++...
T Consensus       189 ~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~d--Vp~~~~v~G~PAr~i~~~~  244 (267)
T 1ssq_A          189 HPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAAGVPARIVSQDK  244 (267)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEETTTTEECC---
T ss_pred             CeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccC--CCCCCEEEecCcEEeccCC
Confidence            4799999999999999999999999999999999998  9999999999999998654

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.70  E-value=1.3e-16  Score=131.59  Aligned_cols=119  Identities=15%  Similarity=0.212  Sum_probs=99.9

Q ss_pred             EecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe------ceeeC
Q 024153           67 IIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH------GCTVE  140 (271)
Q Consensus        67 i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~------~~~Ig  140 (271)
                      +...+.||+++.|++++.|.++   +.||++|.|++++.|....       ..+.||++|.|++++.|.      +++||
T Consensus        30 ~~~~~~ig~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~-------~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig   99 (191)
T 3ixc_A           30 AGVSPSVDSTAFIAGNARIIGD---VCIGKNASIWYGTVLRGDV-------DKIEVGEGTNIQDNTVVHTDSMHGDTVIG   99 (191)
T ss_dssp             TTBCCEECTTSEECTTCEEEEE---EEECTTCEECTTCEEEEEE-------EEEEECTTCEECTTCEECC----CCEEEC
T ss_pred             cCCCCEECCCCEECCCCEEeCC---cEECCCCEECCCCEEecCC-------CCeEECCCCEECCCCEEeecCCcCCeEEC
Confidence            3456778888888888888865   8999999999999997422       257999999999999997      89999


Q ss_pred             CCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc--cCCCHHHH
Q 024153          141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL--RKLTEEEM  197 (271)
Q Consensus       141 ~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~--~~~~~~~~  197 (271)
                      ++|+|+.++.|.+ ++||++|+|+++++|.+++.|++++++.. .+.+.  +++++..+
T Consensus       100 ~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~-gsvV~~~~~i~~~~~  156 (191)
T 3ixc_A          100 KFVTIGHSCILHA-CTLGNNAFVGMGSIVMDRAVMEEGSMLAA-GSLLTRGKIVKSGEL  156 (191)
T ss_dssp             TTCEECTTCEECS-CEECTTCEECTTCEECTTCEECTTCEECT-TCEECTTCEECTTEE
T ss_pred             CCCEECCCCEEEC-CEECCCCEECCCCEEeCCeEECCCCEECC-CCEECCCcCcCCCeE
Confidence            9999999998865 99999999999999999999999998854 36666  45665443

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.69  E-value=3.8e-16  Score=133.85  Aligned_cols=116  Identities=24%  Similarity=0.376  Sum_probs=102.0

Q ss_pred             CceECCCCEECCCcEEecCe----EECCCCEEccCcEEecCC--------------------CceEECCCCEECCCCEEe
Q 024153           52 APVVNKDVFLAPSASIIGDV----QVGRGSSIWYGCVLRGDV--------------------NSISIGSGTNIQDNSLVH  107 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v----~IG~~~~I~~~~~I~~~~--------------------~~~~IG~~~~I~~~~~I~  107 (271)
                      .+.|+++++|++++.|.++.    .||++|.|+++++|....                    ..+.||++|.|+++|.|.
T Consensus        77 ~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~  156 (247)
T 1qre_A           77 EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH  156 (247)
T ss_dssp             SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEE
T ss_pred             CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEc
Confidence            56778889999999888754    999999999999998542                    248999999999999998


Q ss_pred             cCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcE
Q 024153          108 VAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV  180 (271)
Q Consensus       108 ~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~v  180 (271)
                      .          +++||++|+|+.++.|.+++||++|+||++++| +++.|+++++|+++++|..+  +|+..+
T Consensus       157 ~----------~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV-~~~~I~~~~~v~~g~vv~~~--~pa~~i  216 (247)
T 1qre_A          157 G----------PAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA-IGVTIPDGRYIPAGMVVTSQ--AEADKL  216 (247)
T ss_dssp             E----------EEEECTTCEECTTCEEEEEEECTTCEECTTCEE-ESCEECTTBEECTTCEECSH--HHHHTC
T ss_pred             C----------CcEECCCCEECCCCEEeceEECCCCEECCCCEE-CCeEeCCCCEECCCCEEecC--cchhhh
Confidence            4          599999999999999988999999999999999 99999999999999999875  565544

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.67  E-value=9.3e-16  Score=126.63  Aligned_cols=119  Identities=17%  Similarity=0.296  Sum_probs=97.2

Q ss_pred             EecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-----------
Q 024153           67 IIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-----------  135 (271)
Q Consensus        67 i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-----------  135 (271)
                      +..++.|++++.|.+++.|.++   +.||++|.|+++|.|....       +++.||++|.|++++.|.           
T Consensus         9 ~~~~v~I~~~a~I~~~a~I~g~---V~IG~~~~I~~~~~I~~~~-------g~i~IG~~~~I~~~~~I~~~~~~~~~~~~   78 (194)
T 3tv0_A            9 TQKSVKIAPGAVVCVESEIRGD---VTIGPRTVIHPKARIIAEA-------GPIVIGEGNLIEEQALIINAYPDNITPDT   78 (194)
T ss_dssp             ---CEEECTTCEECTTSEEESS---EEECTTCEECTTCEEEESS-------SCEEECTTCEECTTCEEEECCCSCC----
T ss_pred             cCCCCEECCCCEEcCCCEEeCC---CEECCCCEECCCCEEccCC-------CCeEECCCccccCCccccccccccccccc
Confidence            4557778888888888888876   8999999999999998633       368999999999999983           


Q ss_pred             ------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC--CCHHHH
Q 024153          136 ------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK--LTEEEM  197 (271)
Q Consensus       136 ------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~--~~~~~~  197 (271)
                            ++.||++++|+.++.+. ++.||++++|++++.|.++++|+++++++ ..+.+.++  ++++.+
T Consensus        79 ~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~gv~IG~~~~Ig-agsvV~~~~~Ip~~sv  146 (194)
T 3tv0_A           79 EDPEPKPMIIGTNNVFEVGCYSQ-AMKMGDNNVIESKAYVGRNVILTSGCIIG-ACCNLNTFEVIPENTV  146 (194)
T ss_dssp             -----CCEEECSSCEECTTCEEC-CSEECSSCEECTTCEECTTEEECSSCEEC-TTCEECCCEEECTTEE
T ss_pred             ccCcCCceEECCcceEecceeEe-eeeecccceecceeeECCeEEECCCCEEC-CCCEECCCcEECCCCE
Confidence                  37899999999999885 58899999999999999999999998884 44777766  666654

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.67  E-value=6.1e-16  Score=126.91  Aligned_cols=116  Identities=15%  Similarity=0.222  Sum_probs=98.3

Q ss_pred             CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec------------e
Q 024153           70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG------------C  137 (271)
Q Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~------------~  137 (271)
                      ...||+++.|++++.|.++   +.||++|.|++++.|....       ..+.||++|.|++++.|..            +
T Consensus        19 ~~~ig~~~~I~~~~~i~~~---v~IG~~~~I~~~~~i~~~~-------~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~   88 (189)
T 3r1w_A           19 SPKLGERVFVDRSSVIIGD---VELGDDCSVWPLAVIRGDM-------HHIRIGARTSVQDGSVLHITHASDYNPGGYPL   88 (189)
T ss_dssp             CCEECTTCEECTTCEEEEE---EEECTTCEECTTCEEEEEE-------EEEEECTTCEECTTCEEECBCCSSSSTTCBCE
T ss_pred             CCEECCCcEECCCCEEeee---eEECCCCEECCCCEEecCC-------CceEECCCCEECCCCEEecCCcccCCCCCCCe
Confidence            4568888889999988765   9999999999999997421       2579999999999999964            5


Q ss_pred             eeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc--cCCCHHHH
Q 024153          138 TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL--RKLTEEEM  197 (271)
Q Consensus       138 ~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~--~~~~~~~~  197 (271)
                      +||++|+|+.++.|.+ ++||++|+||++++|.++++|+++++++.. +.+.  +++++..+
T Consensus        89 ~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~-s~V~~g~~i~~~~v  148 (189)
T 3r1w_A           89 IIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDGAIVEDEVIVAAG-ATVSPGKVLESGFV  148 (189)
T ss_dssp             EECSSEEECTTCEEES-CEECSSEEECTTCEECTTCEECSSCEECTT-CEECTTCEECTTEE
T ss_pred             EECCCCEECCCCEEeC-cEECCCcEECCCCEEcCCCEECCCCEEccC-CEECCCCEeCCCCE
Confidence            9999999999999976 999999999999999999999999988543 7776  55665443

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.67  E-value=7e-16  Score=126.40  Aligned_cols=117  Identities=16%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE------------ec
Q 024153           69 GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL------------HG  136 (271)
Q Consensus        69 ~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i------------~~  136 (271)
                      ....||+++.|++++.|.++   +.||++|.|++++.|....       ..+.||++|.|++++.|            ++
T Consensus        14 ~~~~ig~~~~I~~~~~i~~~---v~IG~~~~I~~~~~i~~~~-------~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~   83 (187)
T 3r3r_A           14 LFPGIGQRVMIDTSSVVIGD---VRLADDVGIWPLVVIRGDV-------NYVAIGARTNIQDGSVLHVTHKSSSNPHGNP   83 (187)
T ss_dssp             BCCEECTTCEECTTCEEEEE---EEECTTCEECTTCEEEEEE-------EEEEECTTCEECTTCEEECBCCBTTBC-CBC
T ss_pred             cCcccCCCeEECCCCEEECc---eEECCCCEECCCcEEEcCC-------ccEEECCCCEECCCCEEecCCccccCCCCCC
Confidence            35678899999999998765   9999999999999997521       14699999999999999            66


Q ss_pred             eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc--cCCCHHHH
Q 024153          137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL--RKLTEEEM  197 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~--~~~~~~~~  197 (271)
                      ++||++|+|+.++.|.+ ++||++|+||++++|.+++.|+++++++ ..+.+.  +++++..+
T Consensus        84 ~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig-~~s~V~~~~~i~~~~v  144 (187)
T 3r3r_A           84 LIIGEDVTVGHKVMLHG-CTIGNRVLVGMGSIVLDGAIIEDDVMIG-AGSLVPQHKRLESGYL  144 (187)
T ss_dssp             EEECSSCEECTTCEEES-CEECSSEEECTTCEECTTCEECSSEEEC-TTCEECTTCEECTTEE
T ss_pred             eEECCCCEECCCCEEeC-cEECCCCEECCCCEECCCCEECCCCEEC-CCCEECCCcCcCCCcE
Confidence            99999999999999965 9999999999999999999999999885 447776  56665544

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.67  E-value=4.1e-16  Score=144.45  Aligned_cols=129  Identities=16%  Similarity=0.270  Sum_probs=83.5

Q ss_pred             EEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC------CCCCccceEEcCCcEECcCcEEe----
Q 024153           66 SIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN------LAGKVLPTIIGDNVTVGHSAVLH----  135 (271)
Q Consensus        66 ~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~------~~~~~~~~~Ig~~~~i~~~~~i~----  135 (271)
                      .+.+++.||+++.|++++.|.++   +.||++|.|+++|.|....-.      .....+++.||++|.|++++.|.    
T Consensus       264 ~~~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~  340 (459)
T 4fce_A          264 DLRGELTHGRDITIDTNVIIEGH---VILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAE  340 (459)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEE---EEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCE
T ss_pred             EEeCcEEECCCcEECCCeeeccc---eEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcE
Confidence            35556666666666666666644   666666666666666521000      00011233445555444444442    


Q ss_pred             -------------------------------ceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCC
Q 024153          136 -------------------------------GCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPC  177 (271)
Q Consensus       136 -------------------------------~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~  177 (271)
                                                     +++||++|+||+++.+..       +++||++|+||++++|.++++|++
T Consensus       341 ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~  420 (459)
T 4fce_A          341 LAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVAN  420 (459)
T ss_dssp             ECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECT
T ss_pred             ECCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECC
Confidence                                           125666666666666654       689999999999999999999999


Q ss_pred             CcEEeccCceEccCCCHHHHH
Q 024153          178 GEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       178 ~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      ++++++ .+.+.++++++.+.
T Consensus       421 ~~~iga-gsvV~~~v~~~~~~  440 (459)
T 4fce_A          421 GATIGA-GTTVTRDVAENELV  440 (459)
T ss_dssp             TCEECT-TCEECSCBCTTCEE
T ss_pred             CCEECC-CCEEccccCCCCEE
Confidence            999955 49999999887653

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.67  E-value=8.2e-16  Score=124.69  Aligned_cols=112  Identities=24%  Similarity=0.353  Sum_probs=97.8

Q ss_pred             CCCceECCCCEECCCcEEecC---eEECCCCEEccCcEEecC-CCceEECCCCEECCCCEEecCCcCCCCCccceEEcCC
Q 024153           50 DKAPVVNKDVFLAPSASIIGD---VQVGRGSSIWYGCVLRGD-VNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN  125 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~-~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~  125 (271)
                      ...+.|++++.|++++.|.++   +.||++|.|++++.|... ...+.||++|.|++++.|.           +++||++
T Consensus        26 ~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----------~~~Ig~~   94 (173)
T 1v3w_A           26 IGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVH-----------GAKVGNY   94 (173)
T ss_dssp             EEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEE-----------SCEECSS
T ss_pred             eCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEEC-----------CCEECCC
Confidence            346778999999999999875   999999999999999853 2358999999999999996           6899999


Q ss_pred             cEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEE-ccCcEecCC
Q 024153          126 VTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMV-AAGALVRQN  172 (271)
Q Consensus       126 ~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I-g~~svV~~~  172 (271)
                      |+|+.++.+. +++||++|+|+++++|.+++.|++++++ |..+.+.++
T Consensus        95 ~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~  143 (173)
T 1v3w_A           95 VIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQ  143 (173)
T ss_dssp             EEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEE
T ss_pred             CEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcCCEEecc
Confidence            9999999976 5999999999999999999999999999 556666554

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.66  E-value=9.4e-16  Score=124.29  Aligned_cols=119  Identities=24%  Similarity=0.364  Sum_probs=100.3

Q ss_pred             EecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-----ceeeCC
Q 024153           67 IIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-----GCTVED  141 (271)
Q Consensus        67 i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-----~~~Ig~  141 (271)
                      +.....||+++.|++++.|.++   +.||++|.|++++.|....       ..+.||++|.|++++.|.     +++||+
T Consensus         9 ~~~~~~ig~~~~I~~~~~i~~~---v~IG~~~~I~~~~~i~~~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~   78 (173)
T 1xhd_A            9 KEKKPKIASSAFIADYVTITGD---VYVGEESSIWFNTVIRGDV-------SPTIIGDRVNVQDQCTLHQSPQYPLILED   78 (173)
T ss_dssp             TTBCCEECTTCEECTTCEEEEE---EEECTTCEECTTCEEEEEE-------EEEEECTTCEECTTCEEECCTTCCEEECT
T ss_pred             CCCCCEECCCcEECCCCEEECC---EEECCCcEEcCCcEEecCC-------CeEEECCCCEECCCCEEEeCCCCCeEECC
Confidence            3456778999999999999865   9999999999999997521       248999999999999997     799999


Q ss_pred             CcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc--cCCCHHHH
Q 024153          142 EAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL--RKLTEEEM  197 (271)
Q Consensus       142 ~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~--~~~~~~~~  197 (271)
                      +|+|+.++.|.+ ++||++|+|++++.|.++++|++++++... +.+.  +++++..+
T Consensus        79 ~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~-s~V~~~~~i~~~~v  134 (173)
T 1xhd_A           79 DVTVGHQVILHS-CHIKKDALIGMGSIILDGAEIGEGAFIGAG-SLVSQGKKIPPNTL  134 (173)
T ss_dssp             TCEECTTCEEES-CEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECTTEE
T ss_pred             CCEECCCCEEeC-CEECCCCEEcCCCEEcCCCEECCCCEECCC-CEECCCcEeCCCCE
Confidence            999999999964 999999999999999999999999988543 6666  45665543

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.66  E-value=3.2e-16  Score=134.64  Aligned_cols=120  Identities=15%  Similarity=0.243  Sum_probs=105.0

Q ss_pred             cCeEECCCCEEccCcEE-ecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe----ceeeCCCc
Q 024153           69 GDVQVGRGSSIWYGCVL-RGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH----GCTVEDEA  143 (271)
Q Consensus        69 ~~v~IG~~~~I~~~~~I-~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~----~~~Ig~~~  143 (271)
                      +++.|++++.|..++.+ .++...+.||++|.|++++.|...        ..+.||++|.|++++.|.    +++||++|
T Consensus        62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g--------~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~  133 (252)
T 3jqy_B           62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKG--------SKVIIGRRTTIGAGFEVVTDKCNVTIGHDC  133 (252)
T ss_dssp             CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESS--------CEEEECTTCEECTTCEEECSSSEEEECTTC
T ss_pred             CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccC--------CEEEECCCCEECCCcEEEeCCCCeEECCCC
Confidence            56899999998886665 555567999999999999999642        368999999999999998    79999999


Q ss_pred             EEccCcEEccC-------------------cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          144 FVGMGATLLDG-------------------VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       144 ~Ig~~~~I~~~-------------------v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      .||+++.|...                   ++||++|+||+++.|.++++|+++++++ ..+.+.+++++..+
T Consensus       134 ~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~Ig-agsvV~~~vp~~~~  205 (252)
T 3jqy_B          134 MIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIG-YGSIVTKDVPSMCA  205 (252)
T ss_dssp             EECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEEC-TTCEECSCBCTTEE
T ss_pred             EEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEEC-CCCEECcccCCCCE
Confidence            99999999876                   8999999999999999999999999985 44888888887654

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.66  E-value=9.5e-16  Score=134.92  Aligned_cols=138  Identities=20%  Similarity=0.259  Sum_probs=89.2

Q ss_pred             cCCCceECCCCEECCCcEEec-----CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEc
Q 024153           49 FDKAPVVNKDVFLAPSASIIG-----DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG  123 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~~-----~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig  123 (271)
                      +.+.+.|+++++|++++.|.+     ++.||++|.|.++++|..+   +.||++|.|+.++.|....++  ...++++||
T Consensus       132 I~p~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~---~~IG~~v~I~~~~~i~~~~~~--~~~~~v~IG  206 (304)
T 3eg4_A          132 AVPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSC---AQIGKNVHLSGGVGIGGVLEP--MQAGPTIIE  206 (304)
T ss_dssp             ECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTT---CEECTTCEECTTCEECCCCSS--TTCCCCEEC
T ss_pred             EcCCEEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCC---CccCCCcEECCCCEECCcccc--CccCCeEEc
Confidence            344455555555555555544     5555555555555555433   566666666666666543221  234579999


Q ss_pred             CCcEECcCcEE-eceeeCCCcEEccCcEEccCc-------------EECCCcEEccCcEecCCceeCC--CcEEeccCce
Q 024153          124 DNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGV-------------YVEKHAMVAAGALVRQNTKIPC--GEVWGGNPAR  187 (271)
Q Consensus       124 ~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v-------------~Ig~~~~Ig~~svV~~~~~I~~--~~vv~G~pa~  187 (271)
                      ++|+|++++.| .+++||++|+||++++|.+++             .|+++++|+++|+|.++..=.|  +++..+.+.+
T Consensus       207 d~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~kd~~G~P~g~~~~~A~iik  286 (304)
T 3eg4_A          207 DNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPGKNVPGENWGPSLYCAVIVK  286 (304)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECCCCTTSSCCCEEEEEEEEE
T ss_pred             CCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccceeeeccCEeCCCCEEecCcEecCCCCCCcCcccccceEEEE
Confidence            99999999976 569999999999999999876             6777888888888877621112  4455555555


Q ss_pred             EccC
Q 024153          188 FLRK  191 (271)
Q Consensus       188 ~~~~  191 (271)
                      .+..
T Consensus       287 ~~~~  290 (304)
T 3eg4_A          287 RADE  290 (304)
T ss_dssp             ECCH
T ss_pred             Eccc
Confidence            5543

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.66  E-value=6.1e-16  Score=143.22  Aligned_cols=144  Identities=12%  Similarity=0.147  Sum_probs=97.4

Q ss_pred             ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCCC-------CCccceEEc
Q 024153           53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNLA-------GKVLPTIIG  123 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~Ig  123 (271)
                      +.+++++.|++++.|.+++.|+.++.|++++.|....  .++.||++|.|++++.|....-...       .....+.||
T Consensus       260 ~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig  339 (456)
T 2v0h_A          260 FDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELA  339 (456)
T ss_dssp             EEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEEC
T ss_pred             cEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEEC
Confidence            3556666666677776677776667777777766442  2344677777777766642110000       001133344


Q ss_pred             CCcEECcCcEEe-----------------ceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCCCc
Q 024153          124 DNVTVGHSAVLH-----------------GCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPCGE  179 (271)
Q Consensus       124 ~~~~i~~~~~i~-----------------~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~~~  179 (271)
                      ++|.|++++.+.                 +++||++|+||+++.+..       +++||++|+||++++|.++++|++++
T Consensus       340 ~~~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~  419 (456)
T 2v0h_A          340 AETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGA  419 (456)
T ss_dssp             TTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTC
T ss_pred             CCCEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCC
Confidence            444444333331                 258999999999999986       89999999999999999999999999


Q ss_pred             EEeccCceEccCCCHHHH
Q 024153          180 VWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       180 vv~G~pa~~~~~~~~~~~  197 (271)
                      +++++ +.+.+++++..+
T Consensus       420 ~ig~~-s~v~~~v~~~~~  436 (456)
T 2v0h_A          420 TIGAG-TTITRDVGENEL  436 (456)
T ss_dssp             EECTT-CEECSCBCTTCE
T ss_pred             EECCC-CEECCCcCCCCE
Confidence            99765 889888886654

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.65  E-value=9.9e-16  Score=143.91  Aligned_cols=149  Identities=16%  Similarity=0.238  Sum_probs=108.1

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC------------CceEECCCCEECCCCEEecCCcCCC-
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV------------NSISIGSGTNIQDNSLVHVAKSNLA-  114 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~------------~~~~IG~~~~I~~~~~I~~~~~~~~-  114 (271)
                      .+...+.|++++.|++++.+.+++.+|.+|.|++++.+....            ....+|+++.|++++.+.......+ 
T Consensus       279 ~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~  358 (501)
T 3st8_A          279 WIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGAD  358 (501)
T ss_dssp             EECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTT
T ss_pred             cccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccc
Confidence            455677899999999999999999999999988888775311            0112222222222222221110000 


Q ss_pred             ------CCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCCCcEE
Q 024153          115 ------GKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPCGEVW  181 (271)
Q Consensus       115 ------~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~~~vv  181 (271)
                            -...+++||+++.|++.+.+.+++||++|.||+++++..       .++||++|+||+++.+.++++|++++++
T Consensus       359 v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i  438 (501)
T 3st8_A          359 GKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYT  438 (501)
T ss_dssp             CEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEE
T ss_pred             cccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEE
Confidence                  012357788888888888888899999999999998854       4899999999999999999999999998


Q ss_pred             eccCceEccCCCHHHH
Q 024153          182 GGNPARFLRKLTEEEM  197 (271)
Q Consensus       182 ~G~pa~~~~~~~~~~~  197 (271)
                      ++ .+.+.+++|+..+
T Consensus       439 ~a-gs~v~~dvp~~~l  453 (501)
T 3st8_A          439 GA-GTVVREDVPPGAL  453 (501)
T ss_dssp             CT-TCEECSCBCTTCE
T ss_pred             CC-CCEECcccCCCCe
Confidence            54 4899999998864

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.63  E-value=2e-15  Score=131.31  Aligned_cols=116  Identities=22%  Similarity=0.245  Sum_probs=88.0

Q ss_pred             CCCceECCCCEECCCcEE-----ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153           50 DKAPVVNKDVFLAPSASI-----IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD  124 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i-----~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (271)
                      .+.+.|+++++|++++.|     ..++.||++|.|+++++|..+   +.||++|.|++++.|.+..++  ...++++||+
T Consensus       108 ~p~a~I~~~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~---~~IG~~v~I~~~~~i~g~~~~--~~~~~v~IGd  182 (276)
T 3gos_A          108 VPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSC---AQIGKNVHLSGGVGIGGVLEP--LQANPTIIED  182 (276)
T ss_dssp             CTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTT---CEECTTCEECTTCEECCCCSS--TTSCCCEECT
T ss_pred             CCCcEECCCCEECCCCEEcCCEEcCCeEECCCCEECCCCEECCC---CEECCCCEECCCCEECCcccc--CCCCCeEECC
Confidence            444445555555555554     447777777777777777654   788888888888888543221  1235799999


Q ss_pred             CcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCc-------EEccCcEec
Q 024153          125 NVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHA-------MVAAGALVR  170 (271)
Q Consensus       125 ~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~-------~Ig~~svV~  170 (271)
                      +|+||+++.|. +++||++|+||++++|.++++|++++       .|.++++|.
T Consensus       183 ~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv  236 (276)
T 3gos_A          183 NCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVV  236 (276)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEE
Confidence            99999999885 69999999999999999999999988       888888884

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.61  E-value=4.7e-15  Score=124.33  Aligned_cols=120  Identities=15%  Similarity=0.233  Sum_probs=100.8

Q ss_pred             CeEECCCCEEccC-cEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE----eceeeCCCcE
Q 024153           70 DVQVGRGSSIWYG-CVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL----HGCTVEDEAF  144 (271)
Q Consensus        70 ~v~IG~~~~I~~~-~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i----~~~~Ig~~~~  144 (271)
                      .+.||+++.|.+. +.|.++...+.||++|.|++++.|....       ..+.||++|.|++++.+    .+++||++|.
T Consensus        36 ~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~-------~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~  108 (215)
T 2wlg_A           36 SVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSD-------CSLQIQAKTTMGNGEITIAEKGKISIGKDCM  108 (215)
T ss_dssp             EEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTT-------CEEEECTTCEECSEEEEECTTCEEEECTTCE
T ss_pred             EEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCC-------ceEEEcCCCEECCEEEEEeCCCCEEECCCCE
Confidence            4778888888877 5677655579999999999999997421       25999999999996665    5699999999


Q ss_pred             EccCcEEccC-------------------cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          145 VGMGATLLDG-------------------VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       145 Ig~~~~I~~~-------------------v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      |++++.|...                   ++||++|+||++++|.++++|+++++++. .+.+.+++++..+
T Consensus       109 Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIga-gsvV~~~vp~~~i  179 (215)
T 2wlg_A          109 LAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGS-HTVLYKSFKEPNC  179 (215)
T ss_dssp             ECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECT-TCEECSCCCCCSC
T ss_pred             EcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECC-CCEEcCccCCCeE
Confidence            9999999864                   79999999999999999999999999854 4888888876653

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.60  E-value=8.8e-15  Score=123.01  Aligned_cols=106  Identities=22%  Similarity=0.385  Sum_probs=94.4

Q ss_pred             CEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCc
Q 024153           77 SSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGV  155 (271)
Q Consensus        77 ~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v  155 (271)
                      +.+++.+.+.+.   +.||++|.|++++.|..          ++.||++|.|+.++.|. +++||++|+|++++.|.+++
T Consensus       100 ~~i~~~a~i~~~---v~IG~g~~I~~~~~i~~----------~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v  166 (220)
T 4ea9_A          100 NAIHPSAVVSPS---VRLGEGVAVMAGVAINA----------DSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGV  166 (220)
T ss_dssp             CEECTTCEECTT---CEECSSCEECTTCEECT----------TCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSC
T ss_pred             CcCCCCCEECCC---CEECCCCEEcCCCEECC----------CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC
Confidence            567777777655   78999999999999974          78999999999999996 59999999999999999999


Q ss_pred             EECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          156 YVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       156 ~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      +||++|+||++++|.++++|++++++ |..+.+.+++++..
T Consensus       167 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~i-gagsvv~~~v~~~~  206 (220)
T 4ea9_A          167 SVGERAFLGVGARVIPGVTIGADTIV-GAGGVVVRDLPDSV  206 (220)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEE-CTTCEECSCBCTTC
T ss_pred             EECCCCEECCCCEEcCCcEECCCCEE-CCCCEEccccCCCc
Confidence            99999999999999999999999998 45588988887654

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.59  E-value=1.6e-14  Score=128.43  Aligned_cols=143  Identities=15%  Similarity=0.091  Sum_probs=98.0

Q ss_pred             hcCC-CceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCC-----C--CCccc
Q 024153           48 IFDK-APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL-----A--GKVLP  119 (271)
Q Consensus        48 ~~~~-~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~-----~--~~~~~  119 (271)
                      ++.. .+.+++++.|.+++.|.+++.||++|.|++++.|. +   +.||+++.|++++.|..+.-..     .  -...+
T Consensus        60 ~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~---~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~  135 (334)
T 2pig_A           60 WIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-R---ADISDGARISDNVTIQSSSVREECAIYGDARVLNQ  135 (334)
T ss_dssp             EECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEE-S---CEEESSCEECTTCEEESCEEESSEEECTTCEEESS
T ss_pred             EEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEE-e---EEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCC
Confidence            4555 67778888888888888889999999999999887 4   6888888888888876432100     0  00111


Q ss_pred             eEEcC----------CcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC----ceeCCCcEEeccC
Q 024153          120 TIIGD----------NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN----TKIPCGEVWGGNP  185 (271)
Q Consensus       120 ~~Ig~----------~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~----~~I~~~~vv~G~p  185 (271)
                      +.|.+          ++.|++++.+.++.|+++|.|+++|.|. +++|++++.|+++++|..+    ..|++++.+.|+ 
T Consensus       136 s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~-  213 (334)
T 2pig_A          136 SEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGH-  213 (334)
T ss_dssp             CEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECCSSCCEEECTTCEECTT-
T ss_pred             EEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCceeccEEECCCcEEeee-
Confidence            22211          1334555555566677777777777775 6777777777777777665    348999999888 


Q ss_pred             ceEccCCCHHH
Q 024153          186 ARFLRKLTEEE  196 (271)
Q Consensus       186 a~~~~~~~~~~  196 (271)
                      |++.|...+++
T Consensus       214 a~V~R~~~~~E  224 (334)
T 2pig_A          214 ARVIAGTEEDA  224 (334)
T ss_dssp             CEEECCSSTTC
T ss_pred             EEEeccCCHHH
Confidence            99988876653

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.58  E-value=1.2e-14  Score=128.41  Aligned_cols=116  Identities=19%  Similarity=0.272  Sum_probs=81.4

Q ss_pred             CCCceECCCCEECCCcEE-----ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153           50 DKAPVVNKDVFLAPSASI-----IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD  124 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i-----~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (271)
                      .+.+.|+.++.|++++.|     ..++.||++|.|..+++|..+   +.||++|.|++++.|....++.  ...+++||+
T Consensus       149 ~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~---~~IG~~v~I~~~~~I~~~~~~~--~~~~v~IGd  223 (316)
T 3tk8_A          149 VPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSC---AQIGKNVHLSGGVGIGGVLEPL--QANPVIIED  223 (316)
T ss_dssp             CTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTT---CEECTTCEECTTCEECCCCSST--TSCCCEECT
T ss_pred             eCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCC---CEECCCCEEcCCCEECCCcccc--cCCCcEECC
Confidence            344444444555555544     345566666666666666544   5677777777777766433322  234799999


Q ss_pred             CcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCc-------EEccCcEec
Q 024153          125 NVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHA-------MVAAGALVR  170 (271)
Q Consensus       125 ~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~-------~Ig~~svV~  170 (271)
                      +|+||.++.| .+++||++|+||++++|..+++|++.+       .|.++++|.
T Consensus       224 ~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvVv  277 (316)
T 3tk8_A          224 NCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVV  277 (316)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEE
T ss_pred             CCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEEE
Confidence            9999999987 469999999999999999999888777       778887774

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.56  E-value=3.4e-14  Score=117.26  Aligned_cols=105  Identities=17%  Similarity=0.292  Sum_probs=91.4

Q ss_pred             CEEccCcEEecCCCceEEC--CCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEcc
Q 024153           77 SSIWYGCVLRGDVNSISIG--SGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLD  153 (271)
Q Consensus        77 ~~I~~~~~I~~~~~~~~IG--~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~  153 (271)
                      +.|++.+.+..+   +.||  ++|.|++++.|..          ++.||++|.|+.++.+. ++.||++|+|+.++.|.+
T Consensus        76 ~~i~~~a~i~~~---~~Ig~~~g~~I~~~~~I~~----------~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~  142 (194)
T 3bfp_A           76 NLIHKSALISPS---AIVEENAGILIMPYVVINA----------KAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAG  142 (194)
T ss_dssp             CEECTTCEECTT---CEECTTSCCEECTTCEECT----------TCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             cccCCeEEECCC---ceeCCCCCcEEcCCCEECC----------CCEECCCCEECCCCEEcCCCEECCCCEECCCCEECC
Confidence            567777777644   7888  8999999998874          68999999999999995 699999999999999999


Q ss_pred             CcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHH
Q 024153          154 GVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEE  195 (271)
Q Consensus       154 ~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~  195 (271)
                      +++||++|+|+++++|.++++|++++++ |..+.+.+++++.
T Consensus       143 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~I-gagsvv~~~v~~~  183 (194)
T 3bfp_A          143 NVKIGKNCFLGINSCVLPNLSLADDSIL-GGGATLVKNQDEK  183 (194)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEE-CTTCEECSCBCSC
T ss_pred             CcEECCCCEEcCCCEECCCCEECCCCEE-CCCCEEccccCCC
Confidence            9999999999999999999999999998 5558888887653

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.56  E-value=3.5e-14  Score=131.94  Aligned_cols=144  Identities=17%  Similarity=0.288  Sum_probs=101.4

Q ss_pred             CceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCC-----C--CCccceEE
Q 024153           52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNL-----A--GKVLPTII  122 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~-----~--~~~~~~~I  122 (271)
                      .+.+++++.|++++.|.+++.|+.++.|+++|.|....  .++.||++|.|+ ++.|....-..     .  -...++.|
T Consensus       268 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~i  346 (468)
T 1hm9_A          268 ATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSL  346 (468)
T ss_dssp             GCEECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEE
T ss_pred             eeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEE
Confidence            45688889999999999999999999999999997542  234566666665 55554211000     0  00113444


Q ss_pred             cCCcEECcCcEEe-----------------ceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCCC
Q 024153          123 GDNVTVGHSAVLH-----------------GCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPCG  178 (271)
Q Consensus       123 g~~~~i~~~~~i~-----------------~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~~  178 (271)
                      |+++.|++++.+.                 ++.||++|+||+++.+..       +++||++|+||++++|.++++|+++
T Consensus       347 g~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~  426 (468)
T 1hm9_A          347 GAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDN  426 (468)
T ss_dssp             CTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTT
T ss_pred             CCccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCC
Confidence            4444443333321                 246788888888888865       7999999999999999999999999


Q ss_pred             cEEeccCceEccCCCHHHH
Q 024153          179 EVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       179 ~vv~G~pa~~~~~~~~~~~  197 (271)
                      +++++. +.+.+++++..+
T Consensus       427 ~~i~~~-s~v~~~v~~~~~  444 (468)
T 1hm9_A          427 SLVGAG-STITKDVPADAI  444 (468)
T ss_dssp             CEECTT-CEECSCBCTTCE
T ss_pred             CEECCC-CEECCCCCCCCE
Confidence            998654 899999887664

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.56  E-value=4.3e-14  Score=120.42  Aligned_cols=110  Identities=25%  Similarity=0.370  Sum_probs=92.3

Q ss_pred             CCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEc
Q 024153           74 GRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLL  152 (271)
Q Consensus        74 G~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~  152 (271)
                      +.++.|++++.|.+.   +.||++|.|++++.|..          ++.||++|.|+.++.|. +++||++|.|++++.+.
T Consensus        89 ~~~~~I~~~a~I~~~---v~Ig~~~~I~~~s~I~~----------~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  155 (240)
T 3r8y_A           89 GIKARIEPGAIIRDH---VEIGDNAVIMMNATINI----------GAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLA  155 (240)
T ss_dssp             TCSSEECTTCEEBSS---CEECTTCEECTTCEECT----------TCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CCCCEECCCCEECCC---cEECCCCEECCCCEECC----------CCEECCCCEECCCCEECCCCEECCCcEECCCcEEC
Confidence            566777888887755   78999999999999864          68999999999999996 59999999999999997


Q ss_pred             cC--------cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          153 DG--------VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       153 ~~--------v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ..        ++||++|+||++++|.++++|++++++. ..+.+.+++++..+
T Consensus       156 ~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~-~gsvV~~~vp~~~v  207 (240)
T 3r8y_A          156 GVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVA-AGAVVTEDVPPYTV  207 (240)
T ss_dssp             CCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEEC-TTCEECSCBCTTEE
T ss_pred             CCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEEC-CCCEECCCcCCCcE
Confidence            64        8999999999999999999999999875 44777778776654

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.55  E-value=6.7e-15  Score=137.08  Aligned_cols=125  Identities=15%  Similarity=0.247  Sum_probs=108.2

Q ss_pred             CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153           51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH  130 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~  130 (271)
                      ..+.|++++.|++++.| +++.||++|.|+++|+|. +   +.||++|.|++++.|.           .++||++|+||+
T Consensus       290 g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~-~---~vIG~~~~Ig~~a~I~-----------gv~IGd~v~IG~  353 (496)
T 3c8v_A          290 GDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYII-N---SRLERNCVTAHGGKII-----------NAHLGDMIFTGF  353 (496)
T ss_dssp             SSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEE-E---EEEEESCEECTTCEEE-----------SEEEEETCEECT
T ss_pred             CCeEECCCCEECCCcEE-eceEecCCCEECCCceEe-c---eEeCCCCEECCCcEEc-----------CceECCCcEECC
Confidence            46778889999999988 789999999999999998 3   8999999999999997           599999999999


Q ss_pred             CcEEec-----eeeCCCcEEccCcEEc--cCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153          131 SAVLHG-----CTVEDEAFVGMGATLL--DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT  193 (271)
Q Consensus       131 ~~~i~~-----~~Ig~~~~Ig~~~~I~--~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~  193 (271)
                      ++.|.+     ++||++|+||++|.|.  .++.|+++++++ ++ +.....++.+.+..|.|+++.+.+.
T Consensus       354 ~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~-G~-v~~~~~l~~~~~~~~~~~~i~~~~~  421 (496)
T 3c8v_A          354 NSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVW-GY-IRNKADLAAHSISFEEFAKVDGEVT  421 (496)
T ss_dssp             TCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEEC-SE-ESSHHHHHHSEEEHHHHTTCEEEEE
T ss_pred             CCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEEE-EE-eccCccccccccccccHHHHHhHhc
Confidence            999976     4999999999999999  899999999998 44 5455557788888888888776544

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.54  E-value=1.2e-14  Score=130.48  Aligned_cols=103  Identities=19%  Similarity=0.342  Sum_probs=85.4

Q ss_pred             CCCEECCCcEEecCeEECCCCEEccC-cEEecCCCceE-ECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153           57 KDVFLAPSASIIGDVQVGRGSSIWYG-CVLRGDVNSIS-IGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL  134 (271)
Q Consensus        57 ~~~~I~~~~~i~~~v~IG~~~~I~~~-~~I~~~~~~~~-IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i  134 (271)
                      ++++|++++.|.+++.||+++.|+++ ++|..+   +. ||+ |.|+.  .|.          ++++||++|.|++++.|
T Consensus       216 ~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~n---v~vIG~-~~I~~--~Ig----------~~vvIGdnv~Ig~ga~I  279 (387)
T 2rij_A          216 DNTRILESSKVRMGASLAAGTTIMPGASYVNFN---AGTTGA-CMVEG--RIS----------SSAIVGEGSDVGGGASI  279 (387)
T ss_dssp             TTCEESCGGGBBTTCBCCTTCEECSSSCEECTT---CEESSC-CEECS--EEC----------TTCEECTTCEECTTCEE
T ss_pred             CCEEEcCCCEECCCeEEcCCCEEeCCeeEECCC---cEEECC-EEEee--EEC----------CCCEECCCCEECCCceE
Confidence            47888888888888999999999986 887644   44 777 77764  554          37899999999999964


Q ss_pred             ----ec-----eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCC
Q 024153          135 ----HG-----CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPC  177 (271)
Q Consensus       135 ----~~-----~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~  177 (271)
                          ++     ++||++||||++++  .+++||++|+||++++|.+++.+.+
T Consensus       280 ~g~l~g~~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv~i~~  329 (387)
T 2rij_A          280 LGVLSGTSGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGTKFLL  329 (387)
T ss_dssp             CCBCSSTTCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTCEEEE
T ss_pred             cceecCCCccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCceeee
Confidence                33     89999999999999  8999999999999999999955433

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.54  E-value=1.9e-14  Score=133.29  Aligned_cols=117  Identities=15%  Similarity=0.401  Sum_probs=86.6

Q ss_pred             cCCCceECCCCEECCCcEEe----cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153           49 FDKAPVVNKDVFLAPSASII----GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD  124 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~----~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (271)
                      +.+.+.|++++.|+|++.|.    .++.||++|.|+. +.|. +   +.||++|.|+++|.|..          .+.+++
T Consensus       305 ~~~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~-~---~~Ig~~~~Ig~~~~I~~----------~~~~~~  369 (451)
T 1yp2_A          305 YDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-H---SVVGLRSCISEGAIIED----------SLLMGA  369 (451)
T ss_dssp             CCSSSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEE-S---CEECTTCEECTTCEEES----------CEECCC
T ss_pred             cCCCCeeccCCccCCCeEEcceEEeCeEECCCCEEcc-eEEe-c---cEECCCCEECCCCEEcC----------ceEECC
Confidence            34455667777777776551    2466677776664 5555 3   79999999999999985          445555


Q ss_pred             C------------------cEECcCcEEeceeeCCCcEEccCcEEccC------cEECCCcEEccCc-EecCCceeCCCc
Q 024153          125 N------------------VTVGHSAVLHGCTVEDEAFVGMGATLLDG------VYVEKHAMVAAGA-LVRQNTKIPCGE  179 (271)
Q Consensus       125 ~------------------~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~------v~Ig~~~~Ig~~s-vV~~~~~I~~~~  179 (271)
                      +                  +.|++++.+.+++||++|+||++++|..+      .+||++++||+++ +|++++.|++++
T Consensus       370 ~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~ags  449 (451)
T 1yp2_A          370 DYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGI  449 (451)
T ss_dssp             SSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTC
T ss_pred             CCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCc
Confidence            3                  89999999999999999999999999876      3788888898887 355555555554


Q ss_pred             E
Q 024153          180 V  180 (271)
Q Consensus       180 v  180 (271)
                      +
T Consensus       450 v  450 (451)
T 1yp2_A          450 I  450 (451)
T ss_dssp             B
T ss_pred             c
Confidence            3

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.50  E-value=9e-14  Score=120.91  Aligned_cols=108  Identities=17%  Similarity=0.235  Sum_probs=79.8

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------CceEECCCCEECCCCEEecCCcCCCCCccce
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------NSISIGSGTNIQDNSLVHVAKSNLAGKVLPT  120 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~  120 (271)
                      .+...+.|++.++|.+++.|+.++.||.+++|..++.+....       ..+.||++|.|+++++|.+..++  +..+.+
T Consensus       157 vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~--~~~~~V  234 (332)
T 3fsy_A          157 VVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSG--GGTHVI  234 (332)
T ss_dssp             CCCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC-----CCBC
T ss_pred             ecCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCC--CCccce
Confidence            355666677776666666666666666666555554443210       12789999999999999764332  234579


Q ss_pred             EEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEEC
Q 024153          121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVE  158 (271)
Q Consensus       121 ~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig  158 (271)
                      +||++|+||.+++| +++||++|+||++++|..+++|-
T Consensus       235 ~IGDnv~IGanAtI-gVtIGd~~iIGAGSVVtkdt~I~  271 (332)
T 3fsy_A          235 SIGKRCLLGANSGL-GISLGDDCVVEAGLYVTAGTRVT  271 (332)
T ss_dssp             EECTTCEECTTCEE-CSCBCSSCEECTTCEECTTCEEE
T ss_pred             EECCCCEECCCCEE-eeEECCCCEECCCCEECCCCEEE
Confidence            99999999999999 99999999999999999998773

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.50  E-value=7.1e-14  Score=115.47  Aligned_cols=116  Identities=18%  Similarity=0.188  Sum_probs=85.5

Q ss_pred             EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcE
Q 024153           72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGAT  150 (271)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~  150 (271)
                      .+|+++.|.+...+. -..++.||++|.|+.+|+|...        ..++||++|.|++++.|.. ....+.+....++.
T Consensus        58 ~ig~~~~I~~p~~~~-ig~~v~IG~~~~I~~~~~i~~~--------~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~  128 (195)
T 3nz2_A           58 HLGHKSCVQPPFHCE-FGKTIRIGDHTFINMNVVMLDG--------APITIGDHVLIGPSTQFYTASHSLDYRRRQAWET  128 (195)
T ss_dssp             EECTTCEECSSEEES-CSTTEEECTTCEECTTEEEECS--------SCEEECTTCEECTTCEEECEECCSSGGGTTTCCC
T ss_pred             hcCCCcEEcCCeEEE-eCCCeEECCCcEECcCCEEecC--------ceEEECCCCEECCCCEEecCCCCcccccccccce
Confidence            366666666643221 1124788888888888888642        2578999999999988855 66777777777777


Q ss_pred             EccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          151 LLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       151 I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      +..+++||++|+||++++|.++++|+++++++ ..+.+.+++++..+
T Consensus       129 ~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIg-agsvV~~dvp~~~v  174 (195)
T 3nz2_A          129 ICKPIVIEDDVWIGGNVVINQGVTIGARSVVA-ANSVVNQDVPPDTL  174 (195)
T ss_dssp             EECCEEECTTCEECTTCEECTTCEECTTCEEC-TTCEECSCBCSSEE
T ss_pred             ecCCeEECCCCEEcCCCEECCCCEECCCCEEC-CCCEEccccCCCcE
Confidence            88888888888888888888888888888874 44788888776543

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.50  E-value=5.4e-14  Score=123.76  Aligned_cols=117  Identities=14%  Similarity=0.147  Sum_probs=79.8

Q ss_pred             CCceECCCCEECCCcEE--ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEE
Q 024153           51 KAPVVNKDVFLAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTV  128 (271)
Q Consensus        51 ~~~~i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i  128 (271)
                      ..+.|++++.|++++.|  +.++.||++|.|+++|+|...   ++||+++.+++++++.....      ..++||++|+|
T Consensus       162 ~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~---vtIG~~~~ig~~~~i~~~~~------~~~~IGd~v~I  232 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQS---VTLGAMHFQEEGGVIKRGTK------RHPTVGDYVTI  232 (313)
T ss_dssp             HCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTT---CEEECCCCCCTTCCCCCCSS------CSCEECSSCEE
T ss_pred             CCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCC---cEEeCCcEECCCceEcCCCc------cCCEECCCCEE
Confidence            34567777777777777  456778888888888887754   67778888877777764332      35799999999


Q ss_pred             CcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEE-ccCcEecCCceeCCC
Q 024153          129 GHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMV-AAGALVRQNTKIPCG  178 (271)
Q Consensus       129 ~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I-g~~svV~~~~~I~~~  178 (271)
                      |+++.|.+ ++||++|+||++++|..++..+..+++ |..+.+.++  +++.
T Consensus       233 Gaga~Ilggv~IG~~a~IGagsvV~~dVp~gs~vvi~G~PAkvik~--~~~~  282 (313)
T 3q1x_A          233 GTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFVKP--CTTK  282 (313)
T ss_dssp             CTTCEEESSCEECSSEEECTTCEECSCBCSSEEC------------------
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCcCCCCEEEEcCCCcEEEee--Cccc
Confidence            99998865 999999999999999998766666655 677777665  4444

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.49  E-value=5.5e-14  Score=123.11  Aligned_cols=63  Identities=21%  Similarity=0.367  Sum_probs=45.9

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEE
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYV  157 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~I  157 (271)
                      +.||++|.|+++|+|.+..+.  +..+.++||++|+||.+++| +++||++|+||++++|..+++|
T Consensus       231 v~IGdnv~IgpGa~IgG~~~~--~~~~~V~IGdnv~IGAnAtI-GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          231 VFVGKGSDLGGGCSTMGTLSG--GGNIVISVGEGCLIGANAGI-GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             CEECTTEEECTTCEECC--------CCCCEECTTCEECTTCEE-CSCBCTTCEECTTCEECTTCEE
T ss_pred             EEECCCCEECCCCEEccccCC--CCccceEECCCCEECCCCEE-eeEECCCCEECCCCEECCCCEE
Confidence            678888888888888653221  12345888888888888888 8888888888888888877766

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.46  E-value=5.4e-13  Score=109.66  Aligned_cols=114  Identities=13%  Similarity=0.063  Sum_probs=86.2

Q ss_pred             ECC-CCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcE
Q 024153           73 VGR-GSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGAT  150 (271)
Q Consensus        73 IG~-~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~  150 (271)
                      +|+ ++.|.+.+.+. -..++.||+++.|+++|+|...        ..++||++|.|++++.|.. ...++.+....++.
T Consensus        60 ~~~~~~~I~~~~~~~-~g~~v~IG~~~~I~~~~~i~~~--------~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~  130 (190)
T 3hjj_A           60 SADGKAQINPDFRCD-YGYNIHVGKSFFANFNCVILDV--------CEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKE  130 (190)
T ss_dssp             ESSSCCEECSSCEES-SSTTEEECTTCEECTTCEEECS--------SCEEECTTCEECTTCEEECEECCSSHHHHTSSEE
T ss_pred             cCCCCcEECCCEEEE-eCCceEECCceeeCCCeEEEeC--------CCeEECCceEEcCCcEEecCCccCchhhcccccc
Confidence            566 67777766653 1134888999999999988732        2578999999999998855 66667777777777


Q ss_pred             EccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          151 LLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       151 I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      +..+++||++|+||++++|.++++|++++++ |..+.+.+++++..
T Consensus       131 ~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vI-gagsvV~~dvp~~~  175 (190)
T 3hjj_A          131 YGKPVKIGNNVWVGGGAIINPGVSIGDNAVI-ASGAVVTKDVPNNV  175 (190)
T ss_dssp             EECCEEECTTCEECTTCEECTTCEECTTCEE-CTTCEECSCBCTTE
T ss_pred             ccCCeEECCCCEECCCCEECCCCEECCCCEE-CCCCEECcccCCCC
Confidence            7888888888888888888888888888887 44577878777543

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.44  E-value=3.2e-13  Score=111.85  Aligned_cols=35  Identities=26%  Similarity=0.511  Sum_probs=16.7

Q ss_pred             ceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEcc
Q 024153          119 PTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLD  153 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~  153 (271)
                      +++||++|+||.+++|. +++||++|+||++++|..
T Consensus       130 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~  165 (199)
T 3ftt_A          130 PIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTK  165 (199)
T ss_dssp             CEEECSSEEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECc
Confidence            44455555555544443 344444444444444444

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.41  E-value=1.3e-12  Score=108.45  Aligned_cols=115  Identities=14%  Similarity=0.126  Sum_probs=82.7

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEece-eeCCCcEEccCcEE
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGC-TVEDEAFVGMGATL  151 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~-~Ig~~~~Ig~~~~I  151 (271)
                      +|+++.|.+...+. -..++.||++|.|+.+|+|...        ..++||++|.|++++.|... ...+......+..+
T Consensus        58 ig~~~~I~~~~~~~-~g~~i~IG~~~~I~~~~~i~~~--------~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~  128 (203)
T 1krr_A           58 VGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVDD--------YTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMY  128 (203)
T ss_dssp             CCSSCEECSCEEES-CSTTEEECSSCEECSCEEEECS--------SCEEECSSCEECSSCEEESEECCSSTTTCTTCCBE
T ss_pred             cCCCcEEcCCeEEE-eCCCeEECCeeEECCccEEecc--------cceEECCCCEECCCCEEecCCcccchhhcccCcee
Confidence            56666666665443 1245889999999999888742        35889999999999988642 22334444455566


Q ss_pred             ccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          152 LDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       152 ~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ..+++||++|+||++++|.++++|+++++++ ..+.+.+++++..+
T Consensus       129 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIg-agsvV~~dvp~~~v  173 (203)
T 1krr_A          129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIG-AGSIVTKDIPPNVV  173 (203)
T ss_dssp             ECCEEECTTCEECTTCEECTTCEECTTCEEC-TTCEECSCBCTTEE
T ss_pred             CCCcEECCCeEECCCCEEeCCeEECCCCEEC-CCCEECCCcCCCcE
Confidence            7778888888888888888888888888874 45888888876654

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.39  E-value=1.2e-12  Score=121.16  Aligned_cols=92  Identities=23%  Similarity=0.386  Sum_probs=74.0

Q ss_pred             CEECCCcEEec----CeEECCCCEEccCcEEecCCCceEECCC------------------CEECCCCEEecCCcCCCCC
Q 024153           59 VFLAPSASIIG----DVQVGRGSSIWYGCVLRGDVNSISIGSG------------------TNIQDNSLVHVAKSNLAGK  116 (271)
Q Consensus        59 ~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~~  116 (271)
                      +.|+++|.|.+    ++.||++|.|++++.|.+.   +.+|++                  +.|++++.|.         
T Consensus       331 ~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~---------  398 (451)
T 1yp2_A          331 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDS---LLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK---------  398 (451)
T ss_dssp             EEECTTCEEEEEEEESCEECTTCEECTTCEEESC---EECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEE---------
T ss_pred             eEECCCCEEcceEEeccEECCCCEECCCCEEcCc---eEECCCCcccccccccccccCceeEEECCCCEEe---------
Confidence            45555555544    8999999999999999966   677774                  9999999986         


Q ss_pred             ccceEEcCCcEECcCcEEec-------eeeCCCcEEccCcEEccCcEECCCcEEccCcEe
Q 024153          117 VLPTIIGDNVTVGHSAVLHG-------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV  169 (271)
Q Consensus       117 ~~~~~Ig~~~~i~~~~~i~~-------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV  169 (271)
                        +++||++|+||+++.+.+       .+||++|+||+++     ++||++++|+++|+|
T Consensus       399 --~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~a~i~agsvv  451 (451)
T 1yp2_A          399 --RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGIII  451 (451)
T ss_dssp             --SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCBC
T ss_pred             --ccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCCcEECCCccC
Confidence              689999999999998864       2677777777766     789999999999876

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.38  E-value=1.5e-12  Score=106.84  Aligned_cols=112  Identities=14%  Similarity=0.140  Sum_probs=62.9

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEE
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATL  151 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I  151 (271)
                      +|+++.|.+...+. -..++.||+++.|+.+|+|...        ..++||++|.|++++.|.. ....+......++.+
T Consensus        59 ig~~~~I~~~~~~~-~g~~~~IG~~~~i~~~~~i~~~--------~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~  129 (188)
T 3srt_A           59 VGKQINVEQNIRCD-YGYNIHVGENFFANYDCIFLDV--------CKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEY  129 (188)
T ss_dssp             CCSCEEECSCEEES-SSTTEEECTTEEECTTEEEECS--------SCEEECSSCEECTTCEEECEECCSSHHHHHTTEEE
T ss_pred             cCCCCEEcCCEEEE-eCCCeEECCcccccCceEEecC--------CceEECCeeEECCCcEEeeCCccCchhhccccceE
Confidence            44555555554442 1124667777777777777532        2456777777777766633 333333333444455


Q ss_pred             ccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCH
Q 024153          152 LDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE  194 (271)
Q Consensus       152 ~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~  194 (271)
                      ...++||++|+||++++|.++++|+++++++ ..+.+.+++++
T Consensus       130 ~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIg-agsvV~~dvp~  171 (188)
T 3srt_A          130 GSPVKIGDNVWIGGGVIITPGITIGDNVVIG-AGSVVTKDIPP  171 (188)
T ss_dssp             ECCEEECSSCEECTTCEECTTCEECSSEEEC-TTCEECSCBCS
T ss_pred             CCCcEECCCcEEcCCCEECCCcEECCCCEEC-CCCEECcccCC
Confidence            5566666666666666666666666666653 33566565554

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.36  E-value=1.9e-12  Score=108.77  Aligned_cols=44  Identities=9%  Similarity=0.129  Sum_probs=20.7

Q ss_pred             ccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          152 LDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       152 ~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      .++++||++|+||++++|.++++|+++++++ ..+.+.++++++.
T Consensus       117 ~g~v~IG~~v~IG~~a~I~~gv~IG~gavIg-agsvV~~dVp~~~  160 (220)
T 4hur_A          117 KGDIEIGNDVWIGRDVTIMPGVKIGDGAIIA-AEAVVTKNVAPYS  160 (220)
T ss_dssp             CCCEEECSSCEECTTCEECTTCEECTTCEEC-TTCEECSCBCTTE
T ss_pred             cCCeEECCCcEECCCCEEeCCCEECCCCEEc-CCCEEcccCCCCc
Confidence            3444555555555555555555555555442 2244444444433

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.34  E-value=7.9e-12  Score=111.13  Aligned_cols=45  Identities=16%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             eeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEecc
Q 024153          138 TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGN  184 (271)
Q Consensus       138 ~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~  184 (271)
                      .|++++.|+ ++.|..+|+|+.+|.|+ +|+|..++.|++++++.+.
T Consensus       153 ~I~~~a~I~-~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~  197 (334)
T 2pig_A          153 QIYDRATVN-HSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGD  197 (334)
T ss_dssp             EECTTCEEE-SCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECC
T ss_pred             EECCCCEEe-ccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCc
Confidence            344444444 25556666677777776 6777777777888777665

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.34  E-value=2.6e-12  Score=105.13  Aligned_cols=106  Identities=25%  Similarity=0.340  Sum_probs=72.5

Q ss_pred             cCCCceECCCCEECCCcEEe--cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCc
Q 024153           49 FDKAPVVNKDVFLAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV  126 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~  126 (271)
                      ++..+.||++++|.+++.|.  +++.||++|.|++++.|......   .+......+..+.          ++++||++|
T Consensus        71 ~g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~---~~~~~~~~~~~~~----------~~v~IGd~v  137 (185)
T 2p2o_A           71 YGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHP---LDPHERNSGLEYG----------KPVVIGHNV  137 (185)
T ss_dssp             CSTTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECC---SSHHHHHTCCBEE----------CCEEECSSC
T ss_pred             ecCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCc---CChhhcccCcccc----------CCeEEcCCe
Confidence            45666777777777777775  56788888888888877632100   0000001122222          478899999


Q ss_pred             EECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEccC-cEe
Q 024153          127 TVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAAG-ALV  169 (271)
Q Consensus       127 ~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~-svV  169 (271)
                      +|++++.|. +++||++|+||++++|.++  |+++++++++ +.+
T Consensus       138 ~IG~~~~I~~gv~IG~~~vIgagsvV~~~--vp~~~vv~G~Pa~v  180 (185)
T 2p2o_A          138 WIGGRAVINPGVTIGDNAVIASGAVVTKD--VPANAVVGGNPAKV  180 (185)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEE
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEcccCEE
Confidence            999999886 6999999999999999886  7788888766 444

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.32  E-value=9.8e-12  Score=109.14  Aligned_cols=72  Identities=19%  Similarity=0.197  Sum_probs=48.4

Q ss_pred             EECCCCEECCCCEEecCCcCCC-------CCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153           93 SIGSGTNIQDNSLVHVAKSNLA-------GKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus        93 ~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      .||++|.|+++|+|....+..+       .....++||++|+||+++.|. +++||++|+||++++|..+  |++++++.
T Consensus       218 ~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~d--Vp~~svv~  295 (310)
T 3f1x_A          218 IIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTEN--VPAGSRIV  295 (310)
T ss_dssp             EECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEESSCEECTTCEECSSCEECSC--BCTTCEEC
T ss_pred             EEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECCCcEECCCCEECCCCEECCc--cCCCcEEE
Confidence            4555555555555554432211       123456999999999999887 6999999999999999875  46666655


Q ss_pred             cC
Q 024153          165 AG  166 (271)
Q Consensus       165 ~~  166 (271)
                      ++
T Consensus       296 Gn  297 (310)
T 3f1x_A          296 QR  297 (310)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.29  E-value=1.1e-11  Score=101.21  Aligned_cols=112  Identities=17%  Similarity=0.109  Sum_probs=73.5

Q ss_pred             ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEecee-eCCCcEEccCcEE
Q 024153           73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCT-VEDEAFVGMGATL  151 (271)
Q Consensus        73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~-Ig~~~~Ig~~~~I  151 (271)
                      +| ++.|++...+. -..++.||++|.|+.+|+|...        ..++||++|.|++++.|.... --+...-..+..+
T Consensus        56 ~g-~~~I~~~~~~~-~g~~v~IG~~~~I~~~~~i~~~--------~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~  125 (182)
T 1ocx_A           56 VT-EAYIEPTFRCD-YGYNIFLGNNFFANFDCVMLDV--------CPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAEL  125 (182)
T ss_dssp             CS-SEEECSCEEES-SSTTEEECSSEEECSSEEEECS--------SCEEECTTCEECTTCEEECEECCSSHHHHTTTCBE
T ss_pred             cC-CEEEeCCEEEE-eCCCEEECCCcEEeCCeEEEec--------cceEEcCCcEEeCCcEEEeCCCccChhhcccCccc
Confidence            56 67777765432 1245899999999999999732        368889888888888885311 0000000123334


Q ss_pred             ccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHH
Q 024153          152 LDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEE  195 (271)
Q Consensus       152 ~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~  195 (271)
                      ..+++||++|+||++++|.++++|++++++ |..+.+.+++++.
T Consensus       126 ~~~v~IG~~v~Ig~~a~I~~gv~IG~~~vI-gagsvV~~dip~~  168 (182)
T 1ocx_A          126 GKPVTIGNNVWIGGRAVINPGVTIGDNVVV-ASGAVVTKDVPDN  168 (182)
T ss_dssp             ECCEEECTTCEECTTCEECTTCEECTTCEE-CTTCEECSCBCSS
T ss_pred             cCCeEEeCCeEECCCCEECCCcEECCCCEE-CCCCEECCcCCCC
Confidence            566777777778888887777788888777 4457777776654

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.27  E-value=1.5e-11  Score=110.41  Aligned_cols=66  Identities=18%  Similarity=0.312  Sum_probs=49.7

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKH  160 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~  160 (271)
                      +.||++|.|+++++|.+...  .....+++||++|+||.++. .+++||++|.||++++|..++.+.+.
T Consensus       265 vvIGdnv~Ig~ga~I~g~l~--g~~~~~VvIGdnv~IGagAv-~GV~IGdgavIGAGsVVt~dv~i~~~  330 (387)
T 2rij_A          265 AIVGEGSDVGGGASILGVLS--GTSGNAISVGKACLLGANSV-TGIPLGDNCIVDAGIAVLEGTKFLLK  330 (387)
T ss_dssp             CEECTTCEECTTCEECCBCS--STTCCBCEECTTCEECTTCE-ECSCBCTTCEECTTCEECTTCEEEEC
T ss_pred             CEECCCCEECCCceEcceec--CCCccCeEEeCCCEECCCCc-CCcEECCCCEECCCCEECCCceeeec
Confidence            56666666666665432111  11223589999999999999 99999999999999999999988765

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.24  E-value=3.2e-11  Score=104.61  Aligned_cols=68  Identities=16%  Similarity=0.188  Sum_probs=47.1

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEE
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                      +.||++|.|+++++|......  .....++||++|+||+++.|.+ ++||++|+||++++|...  |.+++++
T Consensus       191 ~~IGd~v~I~~gvtIg~~~~~--~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~kd--Vp~~svv  259 (287)
T 3mc4_A          191 AVVEDNVSILHGVTLGGTGKS--SGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKS--VPHNVTV  259 (287)
T ss_dssp             CEECSSCEEETTCEEEC-------CCCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             eEECCCCEEcCCCEEcCCccc--CCCcCCEECCCCEECCCCEECCCcEECCCCEECCCCEEccc--cCCCCEE
Confidence            456666666666666643221  1123589999999999998865 999999999999999874  3454444

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.22  E-value=8.3e-11  Score=101.26  Aligned_cols=69  Identities=17%  Similarity=0.162  Sum_probs=52.2

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      +.||++|.|+++++|.+....  .....++||++|+||+++.|. +++||++|+||++++|..+  |.+++++.
T Consensus       164 ~~IG~~v~I~~gvtig~~~~~--~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~d--Vp~~~~v~  233 (267)
T 1ssq_A          164 SVIENDVSILQGVTLGGTGKE--SGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAA  233 (267)
T ss_dssp             CEECTTCEECTTCEEECCSSS--CSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEE
T ss_pred             eEECCCCEEcCCcEECCCccc--CCCCCeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccC--CCCCCEEE
Confidence            567788888888888754321  112358999999999999885 5999999999999999885  45666543

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.21  E-value=1.3e-10  Score=101.07  Aligned_cols=68  Identities=21%  Similarity=0.246  Sum_probs=50.2

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                      +.||++|.|+++|+|.+....  ...+.++||++|+|++++.|. +++||++|+||++++|..+  |.+++++
T Consensus       184 ~~IG~~v~I~~gvtLg~~~~~--~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d--Vp~~s~v  252 (289)
T 1t3d_A          184 AVIENDVSILQSVTLGGTGKS--GGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTA  252 (289)
T ss_dssp             CEECSSCEECTTCEEECCSSS--CSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEE
T ss_pred             cEECCCCEEcCCcEECCCccc--cCCCCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccC--CCCCCEE
Confidence            456777777777777653221  113468999999999999886 5999999999999999886  4555544

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.19  E-value=1.1e-11  Score=103.44  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             cCCCceECCCCEEC----------------CCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCc-
Q 024153           49 FDKAPVVNKDVFLA----------------PSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKS-  111 (271)
Q Consensus        49 ~~~~~~i~~~~~I~----------------~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~-  111 (271)
                      +.+++.||++++|.                |.+.+.+++.||++|.|+++++|.........++++.+.+.+.+..... 
T Consensus        21 ~~~~v~IG~~t~I~~~~~~~~~~~~~~~i~~~~~i~~~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~~  100 (212)
T 3eev_A           21 TNPNIIVGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFA  100 (212)
T ss_dssp             CCTTEEECSSCEECCGGGCSCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGGT
T ss_pred             eCCCeEECCCeEEccccCccccccceeEECCCccccCCcEECCCCEECCCCEEEeCCCCcccccceeeccceeecccccc
Confidence            44556666666654                2333446788888888888887753321123444444433332211100 


Q ss_pred             ---CCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153          112 ---NLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus       112 ---~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                         ......++++||++|+||.++.|. +++||++|+||++++|...  |+++++++
T Consensus       101 ~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~d--Vp~~~vv~  155 (212)
T 3eev_A          101 DARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKD--VAPYEVVG  155 (212)
T ss_dssp             TCCCCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEE
T ss_pred             cccCCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEE
Confidence               001124578899999999988886 4888888888888888764  45555543

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.14  E-value=4.3e-11  Score=100.37  Aligned_cols=78  Identities=12%  Similarity=0.085  Sum_probs=56.2

Q ss_pred             ceEEcCCcEECcCcEEec-----eee---------CCC----cEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcE
Q 024153          119 PTIIGDNVTVGHSAVLHG-----CTV---------EDE----AFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV  180 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~~-----~~I---------g~~----~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~v  180 (271)
                      .++||++|.|++++.|..     ..+         +++    +.+..+..+.++++||++|+||++++|.++++|+++++
T Consensus        65 ~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~  144 (219)
T 4e8l_A           65 KLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAI  144 (219)
T ss_dssp             CEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTTSCCCCCEEECSSCEECTTCEECTTCEECTTCE
T ss_pred             CEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCcccccccccccccccCCcEECCCeEECCCCEEcCCCEECCCCE
Confidence            678888888888887731     222         222    22333455667789999999999999999999999988


Q ss_pred             EeccCceEccCCCHHHH
Q 024153          181 WGGNPARFLRKLTEEEM  197 (271)
Q Consensus       181 v~G~pa~~~~~~~~~~~  197 (271)
                      ++. .+.+.+++++..+
T Consensus       145 Iga-gsvV~~dv~~~~~  160 (219)
T 4e8l_A          145 IAA-EAVVTKNVAPYSI  160 (219)
T ss_dssp             ECT-TCEECSCBCTTEE
T ss_pred             ECC-CCEEcccCCCCeE
Confidence            854 4888888877654

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.14  E-value=1.5e-10  Score=106.14  Aligned_cols=72  Identities=14%  Similarity=0.249  Sum_probs=61.9

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ  171 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~  171 (271)
                      +.||++|.| +++.|.           +++||++|.|++++.|++++||++|+||.+|.|.+ ++||++|+|+++++|.+
T Consensus       325 ~~ig~~~~I-~~~~i~-----------~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~~i~~  391 (420)
T 3brk_X          325 SVVSGDCII-SGAALN-----------RSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGE  391 (420)
T ss_dssp             CEECSSCEE-ESCEEE-----------SCEECTTCEECTTCEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEESS
T ss_pred             CEECCCCEE-cCCEEe-----------CcEEcCCCEECCCCEEcceEEcCCCEECCCCEEec-eEECCCCEECCCCEEeC
Confidence            578888888 788875           58899999999999999999999999999999986 99999999999999988


Q ss_pred             CceeC
Q 024153          172 NTKIP  176 (271)
Q Consensus       172 ~~~I~  176 (271)
                      +...|
T Consensus       392 ~~~~~  396 (420)
T 3brk_X          392 DPELD  396 (420)
T ss_dssp             CHHHH
T ss_pred             CCCCC
Confidence            75444

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.12  E-value=3.2e-10  Score=103.92  Aligned_cols=86  Identities=15%  Similarity=0.205  Sum_probs=71.4

Q ss_pred             eECCCCEECCCcEEec----------CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEc
Q 024153           54 VVNKDVFLAPSASIIG----------DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG  123 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~----------~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig  123 (271)
                      .+...+.++|++.|+.          ++.||++|.| +++.|. +   +.||++|.|+++|.|.           +++||
T Consensus       298 ~i~~~~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~-~---~~ig~~~~I~~~~~i~-----------~~~i~  361 (420)
T 3brk_X          298 PIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALN-R---SLLFTGVRANSYSRLE-----------NAVVL  361 (420)
T ss_dssp             CCCCCCCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEE-S---CEECTTCEECTTCEEE-----------EEEEC
T ss_pred             ceeeccccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEe-C---cEEcCCCEECCCCEEc-----------ceEEc
Confidence            3445555666666655          7888888888 788885 2   7999999999999997           69999


Q ss_pred             CCcEECcCcEEeceeeCCCcEEccCcEEccCc
Q 024153          124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGV  155 (271)
Q Consensus       124 ~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v  155 (271)
                      ++|.|++++.|.+++||++|.|+++++|.+..
T Consensus       362 ~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~~~  393 (420)
T 3brk_X          362 PSVKIGRHAQLSNVVIDHGVVIPEGLIVGEDP  393 (420)
T ss_dssp             TTCEECTTCEEEEEEECTTCEECTTCEESSCH
T ss_pred             CCCEECCCCEEeceEECCCCEECCCCEEeCCC
Confidence            99999999999999999999999999987653

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.05  E-value=7.7e-11  Score=98.21  Aligned_cols=78  Identities=9%  Similarity=0.122  Sum_probs=55.5

Q ss_pred             ceEEcCCcEECcCcEEe--c------------eeeCCC----cEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcE
Q 024153          119 PTIIGDNVTVGHSAVLH--G------------CTVEDE----AFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV  180 (271)
Q Consensus       119 ~~~Ig~~~~i~~~~~i~--~------------~~Ig~~----~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~v  180 (271)
                      .++||++|.|++++.|.  +            +.++++    +.+..++.+.++++||++|+||++++|.++++|+++++
T Consensus        60 ~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~  139 (209)
T 1mr7_A           60 KLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAI  139 (209)
T ss_dssp             CEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCE
T ss_pred             CEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccccccccCCcEECCCCEEcCCCEEcCCCEECCCCE
Confidence            56777777777777652  1            122222    33445566777889999999999999999999999988


Q ss_pred             EeccCceEccCCCHHHH
Q 024153          181 WGGNPARFLRKLTEEEM  197 (271)
Q Consensus       181 v~G~pa~~~~~~~~~~~  197 (271)
                      +++ .+.+.+++++..+
T Consensus       140 Iga-gs~V~~~v~~~~i  155 (209)
T 1mr7_A          140 VAA-NSVVVKDIAPYML  155 (209)
T ss_dssp             ECT-TCEECSCBCTTEE
T ss_pred             EcC-CCEEcCCCCCCeE
Confidence            854 4888888877654

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.97  E-value=2.7e-09  Score=88.92  Aligned_cols=104  Identities=20%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             cCCCceECCCCEECC--------CcEE--------ecCeEECCCCEEccCcEEecCCCceEECCC---------------
Q 024153           49 FDKAPVVNKDVFLAP--------SASI--------IGDVQVGRGSSIWYGCVLRGDVNSISIGSG---------------   97 (271)
Q Consensus        49 ~~~~~~i~~~~~I~~--------~~~i--------~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~---------------   97 (271)
                      ..+++.||++++|.+        .+.+        .+.+.||++|.|+++++|..........++               
T Consensus        19 ~~~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~   98 (212)
T 1xat_A           19 SNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAF   98 (212)
T ss_dssp             CCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGG
T ss_pred             ccCCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccc
Confidence            356788999999886        2444        368999999999999998521100011111               


Q ss_pred             CEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153           98 TNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus        98 ~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      +.+++++.+          .++++||++|+||.++.|. +++||++|.||++++|...  |.++++++
T Consensus        99 ~~i~~~~~~----------~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~--vp~~~~~~  154 (212)
T 1xat_A           99 AGAVNGYQP----------AGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIVG  154 (212)
T ss_dssp             GGCCCCCCC----------CCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEE
T ss_pred             cccccCcee----------cCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--CCCCcEEE
Confidence            222222222          2479999999999999997 5999999999999999875  56666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	2e-30
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	3e-28
d1xhda_	172	b.81.1.5 (A:) Putative acetyltransferase/acyltrans	2e-25
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	2e-15
d1ocxa_	182	b.81.1.3 (A:) Maltose O-acetyltransferase {Escheri	4e-14
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	4e-13
d1krra_	200	b.81.1.3 (A:) Galactoside acetyltransferase {Esche	3e-11
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	4e-10
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	0.001
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	1e-09
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	1e-04
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	5e-07
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	6e-07
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	2e-06
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	7e-06
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	3e-04
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	0.001

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  110 bits (274), Expect = 2e-30
 Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 9/175 (5%)

Query: 46  MNIF---DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQD 102
           M I+    K P ++   F+  +A +IGDV +   +S+W   VLRGD+  I +G  +N+QD
Sbjct: 1   MAIYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQD 60

Query: 103 NSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAM 162
           N  +H +         PT IG+ VT+GH+A++HG  V +   +G+ + +LDG  +  H +
Sbjct: 61  NVSIHTSHGY------PTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVI 114

Query: 163 VAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAE 217
           + AGA+V  N +IP   +  G P + +R+LTEEE+ +  ++A  Y  LA  H   
Sbjct: 115 IGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKHIKG 169

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score =  105 bits (262), Expect = 3e-28
 Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 20/192 (10%)

Query: 43  RTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISIGSGTNIQ 101
            T  N    APV++   ++ P AS+IG+V +G    +     +R D    I +G  +N+Q
Sbjct: 13  VTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQ 72

Query: 102 DNSLVH-------------VAKSNLAGKVLPTIIGDNV-TVGHSAVLHGCTVEDEAFVGM 147
           D  ++H                  + GK     IG+NV     S V     V D+ F+GM
Sbjct: 73  DGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGM 132

Query: 148 GATLLDGVY----VEKHAMVAAGALVRQNTKIPCGEVWGGN-PARFLRKLTEEEMAFISQ 202
            A +         V +    A G  +     IP G V      A  L ++T++     + 
Sbjct: 133 QAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 192

Query: 203 SAINYSNLARVH 214
            A+ Y N+    
Sbjct: 193 EAVVYVNVHLAE 204

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} Length = 172

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

 Score = 97.0 bits (240), Expect = 2e-25
 Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 6/165 (3%)

Query: 50  DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA 109
           +K P +    F+A   +I GDV VG  SSIW+  V+RGDV+   IG   N+QD   +H  
Sbjct: 10  EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQ- 68

Query: 110 KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169
                    P I+ D+VTVGH  +LH C ++ +A +GMG+ +LDG  + + A + AG+LV
Sbjct: 69  -----SPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLV 123

Query: 170 RQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVH 214
            Q  KIP   +  G PA+ +R+LT E+   + +    Y    + +
Sbjct: 124 SQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIRTQYVEKGQYY 168

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 16/183 (8%)

Query: 56  NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAG 115
           +   +L P    +  + +G   SI  G            G+  +  + +           
Sbjct: 40  DCARYLMPDRDDVDKLVIGSFCSIGSGAAFIM------AGNQGHRAEWASTFPFHFMHEE 93

Query: 116 KVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI 175
                 +      G         +  E ++G  A  + GV V   A++ + ALV  +  +
Sbjct: 94  PAFAGAVNGYQPAGD------TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--V 145

Query: 176 PCGEVWGGNPARFLRK-LTEEEMAFISQSAINYSNLARVHAAENAKSFDEIE-FEKLLRK 233
               + GGNPAR +RK  ++ ++  + + A     LA + AA       +I    +  ++
Sbjct: 146 EPYAIVGGNPARTIRKRFSDGDIQNLLEMAWWDWPLADIEAAMPLLCTGDIPALYQHWKQ 205

Query: 234 KFA 236
           + A
Sbjct: 206 RQA 208

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} Length = 182

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 20/169 (11%)

Query: 27  CRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPS--ASIIGDVQVGRGSSIWYGCV 84
                +   +E   R + L ++F +      + ++ P+       ++ +G      + CV
Sbjct: 31  IHRYNHSLAEEHTLRQQILADLFGQVT----EAYIEPTFRCDYGYNIFLGNNFFANFDCV 86

Query: 85  LRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEA 143
           +  DV  I IG    +     ++            T   D V     A L    T+ +  
Sbjct: 87  ML-DVCPIRIGDNCMLAPGVHIYT----------ATHPIDPVARNSGAELGKPVTIGNNV 135

Query: 144 FVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL 192
           ++G  A +  GV +  + +VA+GA+V ++  +P   V GGNPAR ++KL
Sbjct: 136 WIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL 182

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 64.5 bits (156), Expect = 4e-13
 Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 24/162 (14%)

Query: 55  VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSIS----IGSGTNIQDNSLVHVAK 110
                F+ P    + +V+VG  S          D   +     +     I       +  
Sbjct: 14  NKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKF--CSIGP 71

Query: 111 SNLAGKVLPTIIGDNVTVGHSA----------------VLHGCTVEDEAFVGMGATLLDG 154
                        D  T   +                 +     + ++ ++G    ++ G
Sbjct: 72  GVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPG 131

Query: 155 VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE 196
           V +   A+VAA ++V ++  I    + GGNPA  +++  +++
Sbjct: 132 VKIGDGAIVAANSVVVKD--IAPYMLAGGNPANEIKQRFDQD 171

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 59.1 bits (142), Expect = 3e-11
 Identities = 26/176 (14%), Positives = 68/176 (38%), Gaps = 17/176 (9%)

Query: 27  CRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASII--GDVQVGRGSSIWYGCV 84
                + +  E   R   +  +F     V ++ ++ P        ++ +GR     +   
Sbjct: 32  MYEFNHSHPSEVEKRESLIKEMFAT---VGENAWVEPPVYFSYGSNIHIGRNFYANFNLT 88

Query: 85  LRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAF 144
           +  D  +++IG   N+     V ++ +          +   +           T+ +  +
Sbjct: 89  IV-DDYTVTIGD--NVLIAPNVTLSVTG-------HPVHHELRKNGEMYSFPITIGNNVW 138

Query: 145 VGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFI 200
           +G    +  GV +  ++++ AG++V ++  IP   V  G P R +R++ + +  + 
Sbjct: 139 IGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREINDRDKHYY 192

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 56.3 bits (135), Expect = 4e-10
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL 189
               V +   +G GA +L  + V K+A + A ++V     +P      G PAR +
Sbjct: 188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAAGVPARIV 240

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 12  GFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDV 71
           G         +      ++ +    + ++   T     D+ P V + V +   A I+G++
Sbjct: 149 GIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNI 208

Query: 72  QVGRGSSIWYGCVLRGDV--NSISIGS 96
           +VG+ + I    V+   V   + + G 
Sbjct: 209 EVGKYAKIGANSVVLNPVPEYATAAGV 235

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 14/80 (17%)

Query: 67  IIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV 126
           + G +  GR   I    ++ G+V   ++G    I    ++             ++IGD+ 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNV---TLGHRVKIGTGCVIK-----------NSVIGDDC 56

Query: 127 TVGHSAVLHGCTVEDEAFVG 146
            +    V+    +     +G
Sbjct: 57  EISPYTVVEDANLAAACTIG 76

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 55  VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA 114
             +DV +  +  I G+V +G    I  GCV++  V    IG    I   ++V  A     
Sbjct: 17  HGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSV----IGDDCEISPYTVVEDA----- 67

Query: 115 GKVLPTIIGDNVTVG 129
                  +    T+G
Sbjct: 68  ------NLAAACTIG 76

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 25/145 (17%)

Query: 46  MNIFDKAPV----VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSIS--IGSGTN 99
              +DK P+     ++  F      ++    V +G+ I    VL     +I   +  GT 
Sbjct: 80  TRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTM 139

Query: 100 IQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG---------CTVEDEAFVGMGAT 150
           +  ++   V             IG NV +     + G           +ED  F+G  + 
Sbjct: 140 V--DTWATVGSC--------AQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSE 189

Query: 151 LLDGVYVEKHAMVAAGALVRQNTKI 175
           +++GV VE+ ++++ G  + Q+T+I
Sbjct: 190 VVEGVIVEEGSVISMGVYLGQSTRI 214

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 47.5 bits (112), Expect = 6e-07
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 120 TIIGDNVTVGHSAVL--HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPC 177
            ++G +  V    +L      +E  A +     +   V +   A V A      +  +  
Sbjct: 248 VLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIH--LRG 305

Query: 178 GEVWGGNPA 186
            +V  G   
Sbjct: 306 PKVINGEDR 314

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 10/56 (17%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR 190
           +   + +  FVG  +T++  V +  +++V AG+ + ++  +P   +  G   +  +
Sbjct: 141 YKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKD--VPADAIAIGRGRQINK 194

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 13/141 (9%)

Query: 54  VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL 113
           +++K  F+ P+A +     +G  + I   C++   V    IG GT ++ + +V+      
Sbjct: 1   MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHV---EIGEGTVLKSHVVVNGHTKIG 57

Query: 114 AGKVLPTIIGDNVTVGH-------SAVLHGCTVEDEAFVGMGATLLDG---VYVEKHAMV 163
               +                   + V  G        V +    + G     V    ++
Sbjct: 58  RDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLL 117

Query: 164 AAGALVRQNTKIPCGEVWGGN 184
              A +  +  +    +   N
Sbjct: 118 MINAHIAHDCTVGNRCILANN 138

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 80  WYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTV 139
                   ++    +G G+     + +  A+    G  +    G        A      +
Sbjct: 90  GAHVGNFVEMKKARLGKGSKAGHLTYLGDAEI---GDNVNIGAGTITCNYDGANKFKTII 146

Query: 140 EDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPAR 187
            D+ FVG    L+  V V K A +AAG  V +N            P  
Sbjct: 147 GDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVG-ENALAISRVPQT 193

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 26/122 (21%)

Query: 62  APSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTI 121
           A +A I    ++ +G  I   CV         IG G  + +                   
Sbjct: 4   AKTAIISPKAEINKGVEIGEFCV---------IGDGVKLDEG----------------VK 38

Query: 122 IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW 181
           + +NVT+     +     E   F  +G    D  Y  +++ +  G               
Sbjct: 39  LHNNVTLQGHTFVG-KNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGT 97

Query: 182 GG 183
            G
Sbjct: 98  EG 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.97
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.97
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.94
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.93
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.93
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.92
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.89
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.89
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.89
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.88
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.86
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.86
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.85
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.8
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.73
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.68
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.67
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.66
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.62
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.59
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.54
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.5
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.47
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.43
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.43
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.42
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.38
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.37
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.33
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.28
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.12
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.12
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.1
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.92

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.97  E-value=1e-29  Score=205.09  Aligned_cols=164  Identities=37%  Similarity=0.658  Sum_probs=152.0

Q ss_pred             hhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153           45 LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD  124 (271)
Q Consensus        45 ~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (271)
                      ++.+.+..++|+++++|+|++.|.+++.||++|.|+++++|.++...+.||+++.+++++.+.....      ++++||+
T Consensus         5 i~~~~~~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~------~~~~ig~   78 (172)
T d1xhda_           5 IYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQ------YPLILED   78 (172)
T ss_dssp             EECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTT------CCEEECT
T ss_pred             EEecCCcCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCc------CCeeeee
Confidence            4556788899999999999999999999999999999999987767789999999999999986433      5799999


Q ss_pred             CcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHH
Q 024153          125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSA  204 (271)
Q Consensus       125 ~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~  204 (271)
                      ++.+..++.++++.|+++++|+.+++|.++++||++|+|+++|+|.+++.||++++++|+||++++++++++.+.+++.+
T Consensus        79 ~~~~~~~~~~~~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~~G~Pak~i~~~~~~~~~~~~~~~  158 (172)
T d1xhda_          79 DVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIR  158 (172)
T ss_dssp             TCEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred             eeeeeeeecccccccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCeEEEecCcEEECCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999988888


Q ss_pred             HHHHHHHHHH
Q 024153          205 INYSNLARVH  214 (271)
Q Consensus       205 ~~~~~~~~~~  214 (271)
                      +.|.++.+.+
T Consensus       159 ~~y~~~~k~y  168 (172)
T d1xhda_         159 TQYVEKGQYY  168 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877655

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=2.4e-29  Score=202.98  Aligned_cols=168  Identities=36%  Similarity=0.638  Sum_probs=154.6

Q ss_pred             hhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153           45 LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD  124 (271)
Q Consensus        45 ~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (271)
                      ++.+.+..++|+++++|+|++.|.+++.||++|.|+++++|.+....+.||++|.++..+.+.....      +.+.++.
T Consensus         3 ~y~~~g~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~------~~~~~~~   76 (173)
T d1v3wa_           3 IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHG------YPTEIGE   76 (173)
T ss_dssp             EECBTTBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTT------BCEEECS
T ss_pred             cEECCCCCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccC------CCcccCc
Confidence            3567788899999999999999999999999999999999997767799999999999999986433      5788999


Q ss_pred             CcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHH
Q 024153          125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSA  204 (271)
Q Consensus       125 ~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~  204 (271)
                      ++.+......+.+.||++||||.+|+|.++++||++|+|+++|+|.+++.||++++++|+||++++++++++++++++.+
T Consensus        77 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~~~~~~~~~~~~~~  156 (173)
T d1v3wa_          77 YVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNA  156 (173)
T ss_dssp             SCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred             ceeeeeeeeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecCCCHHHHHHHHHHH
Confidence            99998888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 024153          205 INYSNLARVHAAEN  218 (271)
Q Consensus       205 ~~~~~~~~~~~~~~  218 (271)
                      +.|.++...++++.
T Consensus       157 ~~y~~~~~~~~k~~  170 (173)
T d1v3wa_         157 EIYVELAEKHIKGR  170 (173)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999998876544

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.94  E-value=4.6e-26  Score=195.29  Aligned_cols=156  Identities=19%  Similarity=0.306  Sum_probs=122.4

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC---------------------------CCceEECCCC
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD---------------------------VNSISIGSGT   98 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------------------------~~~~~IG~~~   98 (271)
                      .+.+++.+.|++++.|+|+|+|+++++||++|.|+++++|.++                           .+.+.||+++
T Consensus        11 ~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v~IG~~v   90 (262)
T d2jf2a1          11 TAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRN   90 (262)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSC
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceEEECCee
Confidence            3466777888888888888888888888888888888888632                           1347899999


Q ss_pred             EECCCCEEecCCcCCC---------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcE
Q 024153           99 NIQDNSLVHVAKSNLA---------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAM  162 (271)
Q Consensus        99 ~I~~~~~I~~~~~~~~---------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~  162 (271)
                      .|+++|+|..+.....               ...|++.||+++.+.+++.+.+ ++||++|+||.++.|.++++||++++
T Consensus        91 ~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~  170 (262)
T d2jf2a1          91 RIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVM  170 (262)
T ss_dssp             EECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             eecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhce
Confidence            9999999987643210               1245666666666666666655 99999999999999999999999999


Q ss_pred             EccCcEecCCceeCCCcEEeccCceEcc---------CCCHHHHHHHHHH
Q 024153          163 VAAGALVRQNTKIPCGEVWGGNPARFLR---------KLTEEEMAFISQS  203 (271)
Q Consensus       163 Ig~~svV~~~~~I~~~~vv~G~pa~~~~---------~~~~~~~~~~~~~  203 (271)
                      |+++|+|++|  |||++++.|+||+..+         .+.++.+..+++.
T Consensus       171 igagS~Vtkd--vp~~~~~~G~PA~~~~~n~~gl~R~g~~~e~i~~lk~~  218 (262)
T d2jf2a1         171 VGGCSGVAQD--VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA  218 (262)
T ss_dssp             ECSSCEECSB--BCTTEEEEEBTEEEEEECHHHHHHTTCCHHHHHHHHHH
T ss_pred             eeccceEeec--CCcccccCCCCceeeeeeccchhhcCCCHHHHHHHHHH
Confidence            9999999999  9999999999999863         3555555554433

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.93  E-value=4.5e-25  Score=188.79  Aligned_cols=140  Identities=20%  Similarity=0.226  Sum_probs=109.7

Q ss_pred             hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC-----------
Q 024153           46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA-----------  114 (271)
Q Consensus        46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~-----------  114 (271)
                      .+.+++.+.|++++.|+|+|+|+++++||++|.|+++++|.++   +.||++|.|.+++.|...++...           
T Consensus         6 sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~---t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig   82 (259)
T d1j2za_           6 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGH---TFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG   82 (259)
T ss_dssp             TCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSE---EEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCC---CEEeeecccCCccEECCCCcccccccccceEEec
Confidence            3567788888888888888888888999999999999888865   88888888888888855433211           


Q ss_pred             ----------------CCccceEEcCCcEECcCcEE-------------------eceeeCCCcEEccCcEEccCcEECC
Q 024153          115 ----------------GKVLPTIIGDNVTVGHSAVL-------------------HGCTVEDEAFVGMGATLLDGVYVEK  159 (271)
Q Consensus       115 ----------------~~~~~~~Ig~~~~i~~~~~i-------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~  159 (271)
                                      +....+.||+++.|.+++.+                   .+++||++||||.++.|.++++||+
T Consensus        83 ~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~  162 (259)
T d1j2za_          83 EDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAK  162 (259)
T ss_dssp             SSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred             cccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEecc
Confidence                            00123444444444333333                   2389999999999999999999999


Q ss_pred             CcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153          160 HAMVAAGALVRQNTKIPCGEVWGGNPARFLR  190 (271)
Q Consensus       160 ~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~  190 (271)
                      +|+||++|+|.+|  ||+++++.|+||++..
T Consensus       163 ~a~IgagSvV~kd--Vp~~~i~~G~PA~~~g  191 (259)
T d1j2za_         163 GCMIAGKSALGKD--VPPYCTVEGNRAFIRG  191 (259)
T ss_dssp             TCEECTTCEECSB--BCTTEEEETTBTEEEE
T ss_pred             ceeeeeeeeeccc--cccceeEEeccccccc
Confidence            9999999999999  9999999999999864

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.9e-26  Score=185.97  Aligned_cols=132  Identities=18%  Similarity=0.361  Sum_probs=112.3

Q ss_pred             eECCCCEECCCcEE--ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153           54 VVNKDVFLAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS  131 (271)
Q Consensus        54 ~i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~  131 (271)
                      .||++++|+|++++  +.++.||++|+|+++|+|. +.+.+.||++|.|+++|+|....+          ..+......+
T Consensus        56 ~iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~-~~~~i~IG~~v~Ig~~v~I~~~~~----------~~~~~~~~~~  124 (200)
T d1krra_          56 TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYTVTIGDNVLIAPNVTLSVTGH----------PVHHELRKNG  124 (200)
T ss_dssp             BCCSSCEECSCEEESCSTTEEECSSCEECSCEEEE-CSSCEEECSSCEECSSCEEESEEC----------CSSTTTCTTC
T ss_pred             cCCCCCEEcCCEEEecCCccEECCccEECceEEEe-cCCCcEeCCCccccceeEEecccc----------cceecccccc
Confidence            48999999999888  5689999999999999997 446799999999999999986433          2333333344


Q ss_pred             cEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          132 AVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       132 ~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      ..+ .+++||++||||.+|+|.++++||++|+||++|+|.++  ||++++++|+|||++|++++.+.+
T Consensus       125 ~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kd--vp~~~iv~G~PArvik~~~~~~~~  190 (200)
T d1krra_         125 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREINDRDKH  190 (200)
T ss_dssp             CBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECCGGGTT
T ss_pred             eeecceEEEccCcccceeeecccccccCCCcEEeCCCEEeeE--cCCCcEEEEeCCEEEEeCCHHHHh
Confidence            433 45899999999999999999999999999999999998  999999999999999998876543

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.92  E-value=2.2e-24  Score=178.86  Aligned_cols=158  Identities=27%  Similarity=0.441  Sum_probs=131.4

Q ss_pred             hhhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-CceEECCCCEECCCCEEecCCcCCC--------
Q 024153           44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-NSISIGSGTNIQDNSLVHVAKSNLA--------  114 (271)
Q Consensus        44 ~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-~~~~IG~~~~I~~~~~I~~~~~~~~--------  114 (271)
                      ..+......+.|+++++|+|+|.|.+++.||++|.|+++|+|+++. ..+.||++|.|+++|+|+.......        
T Consensus        14 ~~~~~~~~~p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~   93 (210)
T d1qrea_          14 TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDN   93 (210)
T ss_dssp             BTTBSSCCCCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGG
T ss_pred             CCCCCCCCCCccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCc
Confidence            3455667778999999999999999999999999999999998764 4799999999999999976543211        


Q ss_pred             -----CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcE-----ecCCceeCCCcEEec
Q 024153          115 -----GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGAL-----VRQNTKIPCGEVWGG  183 (271)
Q Consensus       115 -----~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~sv-----V~~~~~I~~~~vv~G  183 (271)
                           ...+++.||++|+|++++.|++ |+||++|+||++++|.+ ++||++|+|+++++     +.+++.||+++++.|
T Consensus        94 ~~~~~~~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv~g~~i~~g~~I~~g~~v~g  172 (210)
T d1qrea_          94 IVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTS  172 (210)
T ss_dssp             CEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEECTTCEECS
T ss_pred             cccccccccceeeccccccccccccccCCcccCCcEeeCCccccc-cccccCcEEecCcEecCcEeCCCcEECCCcEEeC
Confidence                 2257899999999999999975 99999999999999986 57999999876655     456788999999998


Q ss_pred             c-CceEccCCCHHHHHHHHH
Q 024153          184 N-PARFLRKLTEEEMAFISQ  202 (271)
Q Consensus       184 ~-pa~~~~~~~~~~~~~~~~  202 (271)
                      + |++.++.++++.......
T Consensus       173 ~~~~~~i~~~~~~~~~~~~~  192 (210)
T d1qrea_         173 QAEADKLPEVTDDYAYSHTN  192 (210)
T ss_dssp             HHHHHTCCBCCTTSTTTTHH
T ss_pred             CCcccccccCCHHHHHHHHH
Confidence            5 888888887766544333

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.89  E-value=8.3e-23  Score=166.57  Aligned_cols=138  Identities=18%  Similarity=0.318  Sum_probs=100.1

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEE----------------CCCCEEecCCc
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNI----------------QDNSLVHVAKS  111 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I----------------~~~~~I~~~~~  111 (271)
                      ++++.++|+++++|+|++.|.++++||++|.|+++++|..    ..||++|.|                ++++.+.....
T Consensus        10 ~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~----~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~   85 (196)
T d1g97a1          10 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVD----STIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSS   85 (196)
T ss_dssp             EECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEES----CEECTTCEECSCEEESCEECTTCEECSSCEECSSCE
T ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeee----eecccCccccccceeeccccCcceeecceecccccc
Confidence            5888999999999999999999999999999999999863    244444443                33333322110


Q ss_pred             CCCC------------------------CccceEEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEECC
Q 024153          112 NLAG------------------------KVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEK  159 (271)
Q Consensus       112 ~~~~------------------------~~~~~~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig~  159 (271)
                      -...                        ....+.++.++.+++++..        +++.||++||||.++.|.++++||+
T Consensus        86 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~  165 (196)
T d1g97a1          86 LGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGD  165 (196)
T ss_dssp             ECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCEECT
T ss_pred             cccceeecccccceeeecCcceEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECC
Confidence            0000                        0111222222222222222        2378999999999999999999999


Q ss_pred             CcEEccCcEecCCceeCCCcEEeccCceEccC
Q 024153          160 HAMVAAGALVRQNTKIPCGEVWGGNPARFLRK  191 (271)
Q Consensus       160 ~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~  191 (271)
                      +++||++|+|.++  ||+++++.|+||+++|+
T Consensus       166 ~s~IgagsvVtkd--vp~~~i~~G~Pak~~k~  195 (196)
T d1g97a1         166 NSLVGAGSTITKD--VPADAIAIGRGRQINKD  195 (196)
T ss_dssp             TCEECTTCEECSC--BCTTCEECCCCCCCCCC
T ss_pred             CCEECCCCEECcC--cCCCCEEEecCCEEecC
Confidence            9999999999998  99999999999999875

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.89  E-value=2.5e-23  Score=170.25  Aligned_cols=117  Identities=21%  Similarity=0.307  Sum_probs=106.1

Q ss_pred             CCEECCCcEEecCeEE--CCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe
Q 024153           58 DVFLAPSASIIGDVQV--GRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH  135 (271)
Q Consensus        58 ~~~I~~~~~i~~~v~I--G~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~  135 (271)
                      ...|+|++.|..++.|  |.++.|+++++|..+   +.||++|.|+.++.|.          |++.||++|.+++++.+.
T Consensus        74 ~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~----------~~~~Ig~~~~i~~~~~i~  140 (193)
T d3bswa1          74 VNLIHKSALISPSAIVEENAGILIMPYVVINAK---AKIEKGVILNTSSVIE----------HECVIGEFSHVSVGAKCA  140 (193)
T ss_dssp             CCEECTTCEECTTSEECTTSCCEECTTCEECTT---CEECTTCEECTTCEEC----------TTCEECTTCEECTTCEEC
T ss_pred             ceecCCCcEEeeeeEEccccCceEeeeeeecCC---ceeeeccccccccccc----------eeeecccccccccccccc
Confidence            4578888888888777  447899999998866   8999999999999986          489999999999999997


Q ss_pred             c-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          136 G-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       136 ~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                      + +.||++||||++++|.++++||++|+|+++|+|.++  +|+++++.|+|||.+
T Consensus       141 g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~d--v~~~~~~~G~PAk~i  193 (193)
T d3bswa1         141 GNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN--QDEKGVFVGVPAKRM  193 (193)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSCCEECCCCCCCC
T ss_pred             ccceeeccccCCceeeEcCCeEECCCCEECCCCEECcC--CCCCcEEEEeCCEEC
Confidence            7 999999999999999999999999999999999998  999999999999864

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.6e-23  Score=168.38  Aligned_cols=121  Identities=28%  Similarity=0.437  Sum_probs=105.0

Q ss_pred             CEECCCcE--EecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec
Q 024153           59 VFLAPSAS--IIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG  136 (271)
Q Consensus        59 ~~I~~~~~--i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~  136 (271)
                      ++|.++..  ++.++.||+++.|+++|+|. +.+.++||++|.|+++|.|..          .+.+++.+....++.+.+
T Consensus        59 ~~i~~p~~~~~G~ni~IG~~~~I~~~~~I~-d~~~I~IG~~~~Ig~~v~I~~----------~~~~~~~~~~~~~~~~~~  127 (182)
T d1ocxa_          59 AYIEPTFRCDYGYNIFLGNNFFANFDCVML-DVCPIRIGDNCMLAPGVHIYT----------ATHPIDPVARNSGAELGK  127 (182)
T ss_dssp             EEECSCEEESSSTTEEECSSEEECSSEEEE-CSSCEEECTTCEECTTCEEEC----------EECCSSHHHHTTTCBEEC
T ss_pred             eEEECCEEEEeccceeECCccEECCCcEEe-cCCeEEECCCeEECcCceEee----------cccccceeeeeccceEcc
Confidence            46777654  46789999999999999997 456799999999999999986          444566666677776654


Q ss_pred             -eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153          137 -CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL  192 (271)
Q Consensus       137 -~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~  192 (271)
                       ++||++||||.+|+|.++++||++|+||++|+|.++  ||+++++.|+|||++|.+
T Consensus       128 ~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kd--vp~~~i~~G~PAk~ir~i  182 (182)
T d1ocxa_         128 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL  182 (182)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEEEC
T ss_pred             eeEECceEeeCceeeccCcEEECCCCEECCCCEEccC--CCCCeEEEeeCCEEEeeC
Confidence             899999999999999999999999999999999998  999999999999999864

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.88  E-value=2.6e-24  Score=184.01  Aligned_cols=49  Identities=12%  Similarity=0.121  Sum_probs=42.4

Q ss_pred             cEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          149 ATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       149 ~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      +.+.++++||++|+||+++.|.++++|++++++++. +.+.+|+|++.+.
T Consensus       134 ~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~Igag-SvV~kdVp~~~i~  182 (259)
T d1j2za_         134 VTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGK-SALGKDVPPYCTV  182 (259)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTCEECTT-CEECSBBCTTEEE
T ss_pred             ccccccccccccceecceeeeecccEeccceeeeee-eeeccccccceeE
Confidence            334567889999999999999999999999999765 9999999987753

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=2.6e-22  Score=165.92  Aligned_cols=123  Identities=19%  Similarity=0.258  Sum_probs=91.8

Q ss_pred             CceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc---------------C-cEEeceeeCCCcEEccCcEEcc
Q 024153           90 NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH---------------S-AVLHGCTVEDEAFVGMGATLLD  153 (271)
Q Consensus        90 ~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~---------------~-~~i~~~~Ig~~~~Ig~~~~I~~  153 (271)
                      .++.||++|.|+++|+|....+.       +.+.+++.+.+               + ...++++|||+||||.+|+|.+
T Consensus        53 ~~v~IG~~~~I~~g~~I~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~  125 (208)
T d1xata_          53 DKLVIGSFCSIGSGAAFIMAGNQ-------GHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMP  125 (208)
T ss_dssp             CCEEECSSCEECTTCEEECSTTT-------TCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECT
T ss_pred             CeeEECCCCEECCCCEEeccCCC-------cccccceeecccccccccccccccccCccccCCEEEcCCeEECccccccC
Confidence            45888888888888888654331       22222222221               1 1223499999999999999999


Q ss_pred             CcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 024153          154 GVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFISQSAINYSNLARVHAAENAKSFD  223 (271)
Q Consensus       154 ~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (271)
                      +++||++|+||++|+|+++  +|++++++|+||+++|. ++++.+..+.+.  .||++....+++....+.
T Consensus       126 gv~IG~~~vIgagSvVtkd--vp~~si~~G~PAk~ik~R~~~~~i~~l~~~--~w~~~~~~~~~~~~~~~~  192 (208)
T d1xata_         126 GVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTIRKRFSDGDIQNLLEM--AWWDWPLADIEAAMPLLC  192 (208)
T ss_dssp             TCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEESSCHHHHHHHHHH--CGGGSCHHHHHHSHHHHT
T ss_pred             CeEeCCCCEEeCceEEeec--CCcCcEEEecCCEEEeccCCHHHHHHHHHh--ccccCCHHHHHHHHHHHh
Confidence            9999999999999999998  99999999999999976 677777766654  355566666666666664

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.86  E-value=5.3e-21  Score=163.44  Aligned_cols=176  Identities=22%  Similarity=0.269  Sum_probs=105.0

Q ss_pred             ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecC------------------CcCC--C
Q 024153           55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA------------------KSNL--A  114 (271)
Q Consensus        55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~------------------~~~~--~  114 (271)
                      |+++++|+|+|.|.++++||++|.|+++|+|..+   +.||++|.|+++|+|...                  ..++  .
T Consensus         2 i~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~---v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~   78 (262)
T d2jf2a1           2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPH---VEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYA   78 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTT---EEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCC
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCC---CEECCCCEEeCCEEEcCCccccccceeeeecccceeecccccc
Confidence            4455555555555555555555555555555533   555555555555555422                  1111  1


Q ss_pred             CCccceEEcCCcEECcCc-------------------------EE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcE
Q 024153          115 GKVLPTIIGDNVTVGHSA-------------------------VL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGAL  168 (271)
Q Consensus       115 ~~~~~~~Ig~~~~i~~~~-------------------------~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~sv  168 (271)
                      .....+.||+++.|++++                         .| |+|.||++|++++++.+.++++||++|+||+++.
T Consensus        79 ~~~~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~  158 (262)
T d2jf2a1          79 GEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTA  158 (262)
T ss_dssp             SCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             ccCceEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCce
Confidence            112234455554444444                         44 4477777888888888889999999999999999


Q ss_pred             ecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhc
Q 024153          169 VRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFA  236 (271)
Q Consensus       169 V~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (271)
                      |.++++|++++++++. +.+.+++|+..+..  ..++.+..++...++++....+.+...+.+++.+.
T Consensus       159 i~~~v~IG~~a~igag-S~Vtkdvp~~~~~~--G~PA~~~~~n~~gl~R~g~~~e~i~~lk~~~k~L~  223 (262)
T d2jf2a1         159 VHQFCIIGAHVMVGGC-SGVAQDVPPYVIAQ--GNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIY  223 (262)
T ss_dssp             ECTTCEECTTCEECSS-CEECSBBCTTEEEE--EBTEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             eccccEeehhceeecc-ceEeecCCcccccC--CCCceeeeeeccchhhcCCCHHHHHHHHHHHHHHH
Confidence            9999999999999665 99999999877532  22222223333333333333334444444444443

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.85  E-value=1.5e-22  Score=166.85  Aligned_cols=140  Identities=14%  Similarity=0.165  Sum_probs=97.3

Q ss_pred             CceECCCCEECCCcEEec-CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCC-------ccceEEc
Q 024153           52 APVVNKDVFLAPSASIIG-DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGK-------VLPTIIG  123 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~-~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~-------~~~~~Ig  123 (271)
                      .+.+++++.|+++++|.+ ...+++.+.+++++.|.+.   +.||++|.|+++|+|......+...       .....++
T Consensus        23 ~v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~---v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~   99 (203)
T d1mr7a_          23 ILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDK---LKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWE   99 (203)
T ss_dssp             HHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCC---EEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGG
T ss_pred             CeEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCc---cEECCCeEECCCCcEeeecCcEeccCceEeeeeeccccc
Confidence            344555556666666554 3444566677777777654   8999999999999986533211100       0011112


Q ss_pred             CCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          124 DNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       124 ~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      +++.+...+.+ +++.||++||||.+|+|+++++||++|+||++|+|.++  +|++++++|+|||++|.+.+++
T Consensus       100 ~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kd--v~~~~i~~G~PAk~ik~r~~~e  171 (203)
T d1mr7a_         100 KHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGNPANEIKQRFDQD  171 (203)
T ss_dssp             GGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEESSCHH
T ss_pred             CcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeee--CCCCEEEEEeCCEEEeccCCHH
Confidence            22222222323 34999999999999999999999999999999999998  9999999999999998654443

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.1e-19  Score=144.66  Aligned_cols=143  Identities=24%  Similarity=0.342  Sum_probs=103.2

Q ss_pred             hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------------CceEECCCCEECCCCEEecCCcCCC
Q 024153           48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISIGSGTNIQDNSLVHVAKSNLA  114 (271)
Q Consensus        48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~~~IG~~~~I~~~~~I~~~~~~~~  114 (271)
                      .+...+.|++++.|+|++.|.+++.||++|.|+++++|....             ....++++|.++.++.+........
T Consensus        10 ~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~   89 (201)
T d2oi6a1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLE   89 (201)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECT
T ss_pred             EECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeee
Confidence            466778999999999999999999999999999999997431             1233455555554444432211100


Q ss_pred             C-------Cccce-----------------EEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEECCCcE
Q 024153          115 G-------KVLPT-----------------IIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAM  162 (271)
Q Consensus       115 ~-------~~~~~-----------------~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~  162 (271)
                      .       ....+                 .+++++.++.++..        .++.||++||||.++.|.++++||++|+
T Consensus        90 ~~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~  169 (201)
T d2oi6a1          90 GAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGAT  169 (201)
T ss_dssp             TCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCE
T ss_pred             eeeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCE
Confidence            0       01123                 33444444444332        2479999999999999999999999999


Q ss_pred             EccCcEecCCceeCCCcEEe-ccCceEccCC
Q 024153          163 VAAGALVRQNTKIPCGEVWG-GNPARFLRKL  192 (271)
Q Consensus       163 Ig~~svV~~~~~I~~~~vv~-G~pa~~~~~~  192 (271)
                      ||++|+|.+|  ||+++++. |.|++.++.|
T Consensus       170 IgagsvV~kd--Vp~~si~vg~~~~~~~~~~  198 (201)
T d2oi6a1         170 IAAGTTVTRN--VGENALAISRVPQTQKEGW  198 (201)
T ss_dssp             ECTTCEECSC--BCTTCEECCCCCCCCCTTC
T ss_pred             ECCCCEEeee--cCCCCEEEecccceEccCc
Confidence            9999999999  99999855 5899888765

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.73  E-value=1e-17  Score=140.86  Aligned_cols=52  Identities=29%  Similarity=0.425  Sum_probs=50.1

Q ss_pred             ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153          136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL  189 (271)
Q Consensus       136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~  189 (271)
                      .++|||+||||+|++|.++++||++++||+||+|+++  ||++++++|+|||++
T Consensus       189 ~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kd--Vp~~~vv~G~PAr~I  240 (241)
T d1ssqa_         189 HPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAAGVPARIV  240 (241)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEETTTTEEC
T ss_pred             CCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCC--CCCCCEEEecCcEEe
Confidence            3789999999999999999999999999999999999  999999999999986

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.68  E-value=2.6e-16  Score=131.38  Aligned_cols=126  Identities=21%  Similarity=0.380  Sum_probs=105.0

Q ss_pred             CCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-
Q 024153           58 DVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-  136 (271)
Q Consensus        58 ~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-  136 (271)
                      +.++-|++.+..++.|++|++++| +.+.-.   .+||++|.|..+++|..          .+.||++|+|+.++.|.+ 
T Consensus       102 g~RvvPga~VR~GayI~~~vVlmp-s~VNig---A~ig~~~midt~a~vgs----------~aqIG~~vhis~g~~igGv  167 (274)
T d3tdta_         102 GFRVVPPATVRQGAFIARNTVLMP-SYVNIG---AYVDEGTMVDTWATVGS----------CAQIGKNVHLSGGVGIGGV  167 (274)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECS-EEECTT---CEECTTCEECTTEEECT----------TCEECTTCEECTTCEECCS
T ss_pred             CEEeCCCceeccCcEECCCcEEee-eEeccc---cEEcCCcEEcccceecc----------eeEECCCeEECCCcEEEec
Confidence            568899999999999999998776 566544   78999999999999874          789999999999999965 


Q ss_pred             --------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCc-------------eeCCCcEEec--cCc-------
Q 024153          137 --------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT-------------KIPCGEVWGG--NPA-------  186 (271)
Q Consensus       137 --------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~-------------~I~~~~vv~G--~pa-------  186 (271)
                              ++|+|+|+||++|.|.+++.||++++|++|+++++++             .||+++++..  .|+       
T Consensus       168 lep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i~d~~~g~~~~g~vP~~svvv~gs~p~~~~~~~l  247 (274)
T d3tdta_         168 LEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPSKDGSYSL  247 (274)
T ss_dssp             BTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEESSEECTTEEEEEEEEECTTSSCEE
T ss_pred             cccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEeccccceeccCCcEeccccCCCCEEecCceecCCCCcCC
Confidence                    6799999999999999999999999999999999853             4899998863  233       


Q ss_pred             ---eEccCCCHHHH
Q 024153          187 ---RFLRKLTEEEM  197 (271)
Q Consensus       187 ---~~~~~~~~~~~  197 (271)
                         .+++++++...
T Consensus       248 ~cavIvk~~d~~t~  261 (274)
T d3tdta_         248 YCAVIVKKVDAKTR  261 (274)
T ss_dssp             EEEEEEEECCHHHH
T ss_pred             cceEEEEeccCccc
Confidence               35677766554

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.67  E-value=2.6e-16  Score=129.64  Aligned_cols=110  Identities=25%  Similarity=0.408  Sum_probs=96.6

Q ss_pred             CceECCCCEECCCcEEec----CeEECCCCEEccCcEEecCC--------------------CceEECCCCEECCCCEEe
Q 024153           52 APVVNKDVFLAPSASIIG----DVQVGRGSSIWYGCVLRGDV--------------------NSISIGSGTNIQDNSLVH  107 (271)
Q Consensus        52 ~~~i~~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~--------------------~~~~IG~~~~I~~~~~I~  107 (271)
                      .+.||++++|+|+|.|.+    ++.||++|.|+++++|....                    ..+.||++|.|+.++.|.
T Consensus        40 ~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~  119 (210)
T d1qrea_          40 EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH  119 (210)
T ss_dssp             SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEE
T ss_pred             ceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeeccccccccccccc
Confidence            468999999999999953    78999999999999996321                    248899999999999997


Q ss_pred             cCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153          108 VAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN  172 (271)
Q Consensus       108 ~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~  172 (271)
                      +          +++||++++||.++.+.+++||++|+|++++.+. +++|++++.|.+++++..+
T Consensus       120 g----------~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~-g~~i~~g~~I~~g~~v~g~  173 (210)
T d1qrea_         120 G----------PAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAI-GVTIPDGRYIPAGMVVTSQ  173 (210)
T ss_dssp             E----------EEEECTTCEECTTCEEEEEEECTTCEECTTCEEE-SCEECTTBEECTTCEECSH
T ss_pred             c----------CCcccCCcEeeCCccccccccccCcEEecCcEec-CcEeCCCcEECCCcEEeCC
Confidence            4          7999999999999999999999999999998874 6889999999998888775

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.66  E-value=4.5e-16  Score=125.97  Aligned_cols=139  Identities=13%  Similarity=0.203  Sum_probs=80.6

Q ss_pred             eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153           54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV  133 (271)
Q Consensus        54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~  133 (271)
                      .|++++.|++++.|++++.|+.++.|+++|.|...   ++|+ +|.|++++.|.............+.||+++.++.++.
T Consensus        10 ~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~---~~i~-~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~   85 (196)
T d1g97a1          10 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNG---TYVV-DSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSS   85 (196)
T ss_dssp             EECTTCEECTTCEECTTCEEESSCEECTTCEECTT---CEEE-SCEECTTCEECSCEEESCEECTTCEECSSCEECSSCE
T ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCceEcCc---eEee-eeecccCccccccceeeccccCcceeecceecccccc
Confidence            46666666666666666666666666666666543   4553 3666666666432110000011233333333322222


Q ss_pred             E------------e-----------------ceeeCCCcEEccCcEE-------ccCcEECCCcEEccCcEecCCceeCC
Q 024153          134 L------------H-----------------GCTVEDEAFVGMGATL-------LDGVYVEKHAMVAAGALVRQNTKIPC  177 (271)
Q Consensus       134 i------------~-----------------~~~Ig~~~~Ig~~~~I-------~~~v~Ig~~~~Ig~~svV~~~~~I~~  177 (271)
                      +            .                 .+.+++++.+++++..       ..++.||++|+||.++.+.++++|++
T Consensus        86 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~  165 (196)
T d1g97a1          86 LGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGD  165 (196)
T ss_dssp             ECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCEECT
T ss_pred             cccceeecccccceeeecCcceEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECC
Confidence            2            0                 1222223333333322       24678999999999999999999999


Q ss_pred             CcEEeccCceEccCCCHHHH
Q 024153          178 GEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       178 ~~vv~G~pa~~~~~~~~~~~  197 (271)
                      ++++++. +.+.++++++.+
T Consensus       166 ~s~Igag-svVtkdvp~~~i  184 (196)
T d1g97a1         166 NSLVGAG-STITKDVPADAI  184 (196)
T ss_dssp             TCEECTT-CEECSCBCTTCE
T ss_pred             CCEECCC-CEECcCcCCCCE
Confidence            9998654 899999987653

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=2.9e-15  Score=119.36  Aligned_cols=126  Identities=23%  Similarity=0.372  Sum_probs=100.9

Q ss_pred             CCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-
Q 024153           58 DVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-  136 (271)
Q Consensus        58 ~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-  136 (271)
                      |+.|+|.  .+..++||++|+|+++++|.++   +.||++|.|+++|+|....       ..+.||+++.++.++.++. 
T Consensus         2 ~a~i~~~--~~~~~~Ig~~~~I~~~a~I~~~---v~IG~~~~Ig~~~~I~~~~-------~~i~IG~~~~i~~~~~~~~~   69 (172)
T d1xhda_           2 NAMIYPY--KEKKPKIASSAFIADYVTITGD---VYVGEESSIWFNTVIRGDV-------SPTIIGDRVNVQDQCTLHQS   69 (172)
T ss_dssp             CCEEECB--TTBCCEECTTCEECTTCEEEEE---EEECTTCEECTTCEEEEEE-------EEEEECTTCEECTTCEEECC
T ss_pred             CcEEEec--CCcCCEECCCcEECCCCEEeCC---EEECCCcEecCCccccccc-------ccccccceeeeeeeceeccC
Confidence            4555553  2445789999999999999976   9999999999999997532       2589999999999999865 


Q ss_pred             ----eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc--cCCCHHHH
Q 024153          137 ----CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL--RKLTEEEM  197 (271)
Q Consensus       137 ----~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~--~~~~~~~~  197 (271)
                          ++||+++.+..++.+. +++|+++++|+.++.|.++++|+++++++.. +.+.  +++++..+
T Consensus        70 ~~~~~~ig~~~~~~~~~~~~-~~~i~~~~~ig~~~~i~~gv~IG~~~~Igag-svV~~~~~i~~~~v  134 (172)
T d1xhda_          70 PQYPLILEDDVTVGHQVILH-SCHIKKDALIGMGSIILDGAEIGEGAFIGAG-SLVSQGKKIPPNTL  134 (172)
T ss_dssp             TTCCEEECTTCEECTTCEEE-SCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECTTEE
T ss_pred             CcCCeeeeeeeeeeeeeccc-ccccccceEEecccEeeCCcEEcCcccccce-EEEeeCeEECCCeE
Confidence                8999999999999884 5788888888888888888888888887543 6665  34555544

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.3e-15  Score=122.80  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=98.3

Q ss_pred             EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcE
Q 024153           72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGAT  150 (271)
Q Consensus        72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~  150 (271)
                      .||++|.|++++.+. ...++.||++|.|+.+|+|...        +.++||++|.|+++++|.. ....+......+..
T Consensus        56 ~iG~~~~I~p~~~i~-~G~nv~IG~~~~I~~~~~I~~~--------~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~  126 (200)
T d1krra_          56 TVGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVDD--------YTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEM  126 (200)
T ss_dssp             BCCSSCEECSCEEES-CSTTEEECSSCEECSCEEEECS--------SCEEECSSCEECSSCEEESEECCSSTTTCTTCCB
T ss_pred             cCCCCCEEcCCEEEe-cCCccEECCccEECceEEEecC--------CCcEeCCCccccceeEEecccccceeccccccee
Confidence            477888888887774 2345899999999999999742        4689999999999999966 66777777778888


Q ss_pred             EccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153          151 LLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA  198 (271)
Q Consensus       151 I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~  198 (271)
                      +...++||++|+||++++|.++++|+++++++ ..+.+.+++++..+.
T Consensus       127 ~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIg-agSvV~kdvp~~~iv  173 (200)
T d1krra_         127 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIG-AGSIVTKDIPPNVVA  173 (200)
T ss_dssp             EECCEEECTTCEECTTCEECTTCEECTTCEEC-TTCEECSCBCTTEEE
T ss_pred             ecceEEEccCcccceeeecccccccCCCcEEe-CCCEEeeEcCCCcEE
Confidence            88899999999999999999999999999984 558999999877653

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.54  E-value=3.4e-14  Score=115.23  Aligned_cols=90  Identities=19%  Similarity=0.328  Sum_probs=78.5

Q ss_pred             CCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCc
Q 024153           95 GSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT  173 (271)
Q Consensus        95 G~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~  173 (271)
                      |.++.|+++++|..          ++.||++|.|..++.|. ++.||++|.+++++.+.++++||++|+||++|+|.+++
T Consensus        92 g~g~~I~~~~~I~~----------~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v  161 (193)
T d3bswa1          92 NAGILIMPYVVINA----------KAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNL  161 (193)
T ss_dssp             TSCCEECTTCEECT----------TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             ccCceEeeeeeecC----------CceeeeccccccccccceeeeccccccccccccccccceeeccccCCceeeEcCCe
Confidence            45677777777764          67888899998998884 59999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeccCceEccCCCHH
Q 024153          174 KIPCGEVWGGNPARFLRKLTEE  195 (271)
Q Consensus       174 ~I~~~~vv~G~pa~~~~~~~~~  195 (271)
                      +|++++++ |..+.+.+++++.
T Consensus       162 ~Ig~~~~I-gagsvV~~dv~~~  182 (193)
T d3bswa1         162 SLADDSIL-GGGATLVKNQDEK  182 (193)
T ss_dssp             EECTTCEE-CTTCEECSCBCSC
T ss_pred             EECCCCEE-CCCCEECcCCCCC
Confidence            99999998 4558888888754

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=4.9e-14  Score=97.31  Aligned_cols=68  Identities=18%  Similarity=0.437  Sum_probs=51.3

Q ss_pred             EEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEE
Q 024153           66 SIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFV  145 (271)
Q Consensus        66 ~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~I  145 (271)
                      .|.+++.||++|.|+++++|.++   ++||++|.|+++|.|.           ++.||+++.|++++.|+++.||++|.|
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~---~~IG~~v~Ig~~~~i~-----------~~~Ig~~~~I~~~s~i~~~~Ig~~~~I   75 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGN---VTLGHRVKIGTGCVIK-----------NSVIGDDCEISPYTVVEDANLAAACTI   75 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEE---EEECTTCEECTTCEEE-----------SCEECTTCEECTTCEEESEEECTTCEE
T ss_pred             EEeccEEECCCCEECCccEEeCC---cEECCCCEECCCeEEe-----------cCEECCCCEEcCCcEEECCEECCCCEE
Confidence            46677788888888888888765   7788888888888776           577777777777777777777777777


Q ss_pred             cc
Q 024153          146 GM  147 (271)
Q Consensus       146 g~  147 (271)
                      |+
T Consensus        76 GP   77 (78)
T d1fxja1          76 GP   77 (78)
T ss_dssp             SC
T ss_pred             Cc
Confidence            64

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=2.3e-13  Score=110.46  Aligned_cols=129  Identities=15%  Similarity=0.232  Sum_probs=90.3

Q ss_pred             cEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC------CCccceEEcCCcEECcCcEE----
Q 024153           65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA------GKVLPTIIGDNVTVGHSAVL----  134 (271)
Q Consensus        65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~------~~~~~~~Ig~~~~i~~~~~i----  134 (271)
                      +.|.+.+.||+++.|+++++|.+.   +.||++|.|+++|+|........      .....+.+++++.++.++.+    
T Consensus         9 ~~i~~~v~IG~~v~Ig~~vvI~~~---v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~   85 (201)
T d2oi6a1           9 FDLRGTLTHGRDVEIDTNVIIEGN---VTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGA   85 (201)
T ss_dssp             EEEEEEEEECSSCEECTTEEEEEE---EEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTC
T ss_pred             EEECceEEECCCCEECCCCEECCc---eEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccce
Confidence            468889999999999999999866   89999999999999975433211      01122333333333332222    


Q ss_pred             --------------ece-----------------eeCCCcEEccCcEEc-------cCcEECCCcEEccCcEecCCceeC
Q 024153          135 --------------HGC-----------------TVEDEAFVGMGATLL-------DGVYVEKHAMVAAGALVRQNTKIP  176 (271)
Q Consensus       135 --------------~~~-----------------~Ig~~~~Ig~~~~I~-------~~v~Ig~~~~Ig~~svV~~~~~I~  176 (271)
                                    ..+                 .+++++.+++++...       .++.||++++||.++.+.++++|+
T Consensus        86 ~~~~~~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG  165 (201)
T d2oi6a1          86 ELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVG  165 (201)
T ss_dssp             EECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEEC
T ss_pred             eeeeeeeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEEC
Confidence                          223                 344444444444322       357999999999999999999999


Q ss_pred             CCcEEeccCceEccCCCHHHH
Q 024153          177 CGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       177 ~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      +++++++. +.+.+++|++.+
T Consensus       166 ~~s~Igag-svV~kdVp~~si  185 (201)
T d2oi6a1         166 KGATIAAG-TTVTRNVGENAL  185 (201)
T ss_dssp             TTCEECTT-CEECSCBCTTCE
T ss_pred             CCCEECCC-CEEeeecCCCCE
Confidence            99999655 999999988754

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2e-13  Score=109.48  Aligned_cols=98  Identities=16%  Similarity=0.154  Sum_probs=85.4

Q ss_pred             CceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcE
Q 024153           90 NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGAL  168 (271)
Q Consensus        90 ~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~sv  168 (271)
                      .++.||++|.|+.+|+|...        ..++||++|.|++++.|.. +.+++.+....++.+...++||++|+||+++.
T Consensus        71 ~ni~IG~~~~I~~~~~I~d~--------~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~  142 (182)
T d1ocxa_          71 YNIFLGNNFFANFDCVMLDV--------CPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAV  142 (182)
T ss_dssp             TTEEECSSEEECSSEEEECS--------SCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCE
T ss_pred             cceeECCccEECCCcEEecC--------CeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceee
Confidence            45789999999999999742        3689999999999998865 77888888999999999999999999999999


Q ss_pred             ecCCceeCCCcEEeccCceEccCCCHHH
Q 024153          169 VRQNTKIPCGEVWGGNPARFLRKLTEEE  196 (271)
Q Consensus       169 V~~~~~I~~~~vv~G~pa~~~~~~~~~~  196 (271)
                      |.++++|++++++ |..+.+.+++++..
T Consensus       143 I~~Gv~IG~~~vI-gagsvV~kdvp~~~  169 (182)
T d1ocxa_         143 INPGVTIGDNVVV-ASGAVVTKDVPDNV  169 (182)
T ss_dssp             ECTTCEECTTCEE-CTTCEECSCBCSSE
T ss_pred             ccCcEEECCCCEE-CCCCEEccCCCCCe
Confidence            9999999999998 45589999988654

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=6.7e-13  Score=105.40  Aligned_cols=117  Identities=13%  Similarity=0.210  Sum_probs=83.1

Q ss_pred             cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-----eeeCCCc
Q 024153           69 GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-----CTVEDEA  143 (271)
Q Consensus        69 ~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-----~~Ig~~~  143 (271)
                      .+.+||++|+|+++++|.++   +.||++|.|+++|.|....       +.+.|++++.+...+.++.     +.+++++
T Consensus         9 ~~~~I~~~~~I~~~a~I~g~---v~IG~~~~Ig~~~~I~~~~-------~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~   78 (173)
T d1v3wa_           9 KKPRIHPSAFVDENAVVIGD---VVLEEKTSVWPSAVLRGDI-------EQIYVGKYSNVQDNVSIHTSHGYPTEIGEYV   78 (173)
T ss_dssp             BCCEECTTCEECTTSEEEEE---EEECTTCEECTTCEEEEEE-------EEEEECTTCEECTTCEEECBTTBCEEECSSC
T ss_pred             CCCEECcCcEECCCCEEeCc---eEECCCCEECCCccccccc-------cccccccccccccccccccccCCCcccCcce
Confidence            45678899999999999866   9999999999999997532       3688999999999998853     5666666


Q ss_pred             EEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc--cCCCHHHH
Q 024153          144 FVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL--RKLTEEEM  197 (271)
Q Consensus       144 ~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~--~~~~~~~~  197 (271)
                      .+..... ...+.||++++||+++.|.+++.|+++++++ .-+.+.  +++++..+
T Consensus        79 ~~~~~~~-~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIg-agsvV~~~~~i~~~~i  132 (173)
T d1v3wa_          79 TIGHNAM-VHGAKVGNYVIIGISSVILDGAKIGDHVIIG-AGAVVPPNKEIPDYSL  132 (173)
T ss_dssp             EECTTCE-EESCEECSSEEECTTCEECTTCEECSSEEEC-TTCEECTTCEECTTEE
T ss_pred             eeeeeee-eeeeecCCcccccceeeecCCEEEcceeEEc-CCcEEeCCeEeCCCCE
Confidence            6554333 3346666666666666666666666666653 335554  24455444

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=2.8e-13  Score=93.42  Aligned_cols=68  Identities=16%  Similarity=0.337  Sum_probs=60.8

Q ss_pred             EEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153           84 VLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMV  163 (271)
Q Consensus        84 ~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I  163 (271)
                      .|.++   +.||++|.|+++++|.+          +++||++|.|+++|.|++++||+++.|++++.|. +++||++|.|
T Consensus        10 ~I~g~---v~IG~~~~I~~~~~i~g----------~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~-~~~Ig~~~~I   75 (78)
T d1fxja1          10 DLRGT---LTHGRDVEIDTNVIIEG----------NVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVE-DANLAAACTI   75 (78)
T ss_dssp             EEEEE---EEECSSCEECTTEEEEE----------EEEECTTCEECTTCEEESCEECTTCEECTTCEEE-SEEECTTCEE
T ss_pred             EEecc---EEECCCCEECCccEEeC----------CcEECCCCEECCCeEEecCEECCCCEEcCCcEEE-CCEECCCCEE
Confidence            35555   89999999999999985          7999999999999999999999999999999995 5899999888


Q ss_pred             cc
Q 024153          164 AA  165 (271)
Q Consensus       164 g~  165 (271)
                      |+
T Consensus        76 GP   77 (78)
T d1fxja1          76 GP   77 (78)
T ss_dssp             SC
T ss_pred             Cc
Confidence            85

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.38  E-value=2.7e-14  Score=116.77  Aligned_cols=119  Identities=7%  Similarity=0.001  Sum_probs=77.4

Q ss_pred             EEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe---ceeeCCC
Q 024153           66 SIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH---GCTVEDE  142 (271)
Q Consensus        66 ~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~---~~~Ig~~  142 (271)
                      .|.+.+.+++++.|+++++|.+.  ...+++.+.+++++.|..          ++.||++|.|++++.|.   ...++++
T Consensus        19 ~I~~~v~i~~nV~IG~~~~I~~~--~~~~~~~~~i~~~~~I~~----------~v~IG~~~~Ig~gv~I~~~~~~~i~d~   86 (203)
T d1mr7a_          19 FIKPILEKLENVEVGEYSYYDSK--NGETFDKQILYHYPILND----------KLKIGKFCSIGPGVTIIMNGANHRMDG   86 (203)
T ss_dssp             EHHHHHTTSTTEEECTTCEEECS--SSCCGGGGEESCCGGGCC----------CEEECSSCEECTTCEEECGGGCCCCSS
T ss_pred             EECCCeEECCCEEECCCcEEcCC--cCcccCceEEeeeCEECC----------ccEECCCeEECCCCcEeeecCcEeccC
Confidence            33333444444444444444322  123344555555555542          57778888888888762   2444444


Q ss_pred             cEE---------------ccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153          143 AFV---------------GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM  197 (271)
Q Consensus       143 ~~I---------------g~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~  197 (271)
                      +.+               ..++.+..+++||++|+||++++|.++++|+++++++ ..+.+.++++++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~Ig-agSvV~kdv~~~~i  155 (203)
T d1mr7a_          87 STYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVA-ANSVVVKDIAPYML  155 (203)
T ss_dssp             CCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEEC-TTCEECSCBCTTEE
T ss_pred             ceEeeeeecccccCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEe-cCeEEeeeCCCCEE
Confidence            443               3444566789999999999999999999999999985 45888899888775

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.37  E-value=1.2e-13  Score=105.47  Aligned_cols=61  Identities=15%  Similarity=0.311  Sum_probs=37.2

Q ss_pred             eEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCC------cEEccC-cEecCCceeCCCcE
Q 024153          120 TIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKH------AMVAAG-ALVRQNTKIPCGEV  180 (271)
Q Consensus       120 ~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~------~~Ig~~-svV~~~~~I~~~~v  180 (271)
                      +.+++++.|+++|.|.+++|+++|.||+++.+..++.+.++      +++..+ ++|.+++.||++++
T Consensus        67 ~~i~~~v~Ig~~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~v  134 (135)
T d1yp2a1          67 AKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGII  134 (135)
T ss_dssp             TTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred             eEcCCCCEECcceEeccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcC
Confidence            34566677777777777778888888777777666544444      444444 23444444554443

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.33  E-value=1.1e-11  Score=103.24  Aligned_cols=102  Identities=21%  Similarity=0.254  Sum_probs=75.8

Q ss_pred             CCCceECCCCEECCCcEE-----ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153           50 DKAPVVNKDVFLAPSASI-----IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD  124 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i-----~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~  124 (271)
                      -+...+-.+++|++++.+     .-+++||++|.|..+++|..+   +.||++|.|+.++.|.+...+..  ..+++|++
T Consensus       106 vPga~VR~GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~---aqIG~~vhis~g~~igGvlep~~--~~p~iIed  180 (274)
T d3tdta_         106 VPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSC---AQIGKNVHLSGGVGIGGVLEPLQ--ANPTIIED  180 (274)
T ss_dssp             CTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTT---CEECTTCEECTTCEECCSBTTBC--SSCCEECT
T ss_pred             CCCceeccCcEECCCcEEeeeEeccccEEcCCcEEcccceecce---eEECCCeEECCCcEEEeccccCC--CCCcEEec
Confidence            344445555666666544     446777777777777777755   78888888888888876544322  35899999


Q ss_pred             CcEECcCcEE-eceeeCCCcEEccCcEEccCcE
Q 024153          125 NVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVY  156 (271)
Q Consensus       125 ~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~  156 (271)
                      +|+||+++.+ .++.||+++.|++|++|...+.
T Consensus       181 ~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~  213 (274)
T d3tdta_         181 NCFIGARSEVVEGVIVEEGSVISMGVYLGQSTR  213 (274)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCC
T ss_pred             CcEeccCceEecCEEecCceEeccceEEecccc
Confidence            9999999976 6799999999999999988643

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.28  E-value=9.2e-13  Score=100.48  Aligned_cols=104  Identities=21%  Similarity=0.302  Sum_probs=66.3

Q ss_pred             ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC---------------CceEECCCCEECCCCEEecCCcCCCCCc
Q 024153           53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------------NSISIGSGTNIQDNSLVHVAKSNLAGKV  117 (271)
Q Consensus        53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------------~~~~IG~~~~I~~~~~I~~~~~~~~~~~  117 (271)
                      ..|+++++|. ++.+ .++.||++|.|++++.|....               ..+.+++++.|+++|.|.          
T Consensus        15 s~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~----------   82 (135)
T d1yp2a1          15 SVIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK----------   82 (135)
T ss_dssp             EEECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEE----------
T ss_pred             CEECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEec----------
Confidence            3455555553 2222 245566666666666665330               012344557778888776          


Q ss_pred             cceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccC-cEECCCcEEccCcEe
Q 024153          118 LPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG-VYVEKHAMVAAGALV  169 (271)
Q Consensus       118 ~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~-v~Ig~~~~Ig~~svV  169 (271)
                       ++.|+++|.|++++.+.+ +.+.+++.++.++.+..+ ++||++++|+++++|
T Consensus        83 -~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI  135 (135)
T d1yp2a1          83 -RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII  135 (135)
T ss_dssp             -SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred             -cceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence             578888888888888744 667777777777777766 567888888877764

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.12  E-value=9.6e-11  Score=95.55  Aligned_cols=94  Identities=21%  Similarity=0.152  Sum_probs=63.5

Q ss_pred             cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC-----CCCCccceEEcCCcEECcCcEEec-eeeCCC
Q 024153           69 GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN-----LAGKVLPTIIGDNVTVGHSAVLHG-CTVEDE  142 (271)
Q Consensus        69 ~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~-----~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~  142 (271)
                      +++.||++|.|+++++|........+.+++.+.+.+........     .....++++||++|+||.++.|.+ ++||++
T Consensus        53 ~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~  132 (208)
T d1xata_          53 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHG  132 (208)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTT
T ss_pred             CeeEECCCCEECCCCEEeccCCCcccccceeecccccccccccccccccCccccCCEEEcCCeEECccccccCCeEeCCC
Confidence            46889999999999988644333445555555444433222110     012345799999999999998865 999999


Q ss_pred             cEEccCcEEccCcEECCCcEEc
Q 024153          143 AFVGMGATLLDGVYVEKHAMVA  164 (271)
Q Consensus       143 ~~Ig~~~~I~~~v~Ig~~~~Ig  164 (271)
                      |+||++++|..++  .++++++
T Consensus       133 ~vIgagSvVtkdv--p~~si~~  152 (208)
T d1xata_         133 AIIGSRALVTGDV--EPYAIVG  152 (208)
T ss_dssp             CEECTTCEECSCB--CTTEEEE
T ss_pred             CEEeCceEEeecC--CcCcEEE
Confidence            9999999998764  4554443

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.12  E-value=2.8e-10  Score=98.63  Aligned_cols=51  Identities=14%  Similarity=0.194  Sum_probs=28.1

Q ss_pred             CCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCC
Q 024153           50 DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNS  104 (271)
Q Consensus        50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~  104 (271)
                      ...+.|++++.|++++.|.++++||+++.|+ ++.|.++   +.|+++|.|++++
T Consensus        67 ~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~---a~I~~n~~i~~~~  117 (320)
T d2f9ca1          67 FAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDG---ARISDNVTIQSSS  117 (320)
T ss_dssp             CSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSS---EEECSSCEEESCE
T ss_pred             CCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcC---cEEeeeeeecCcc
Confidence            3445555556666666666666666665554 4555433   5566665555444

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.10  E-value=3.9e-10  Score=93.80  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=51.6

Q ss_pred             eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEcc
Q 024153           92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAA  165 (271)
Q Consensus        92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~  165 (271)
                      +.||++|.|..++++....+.  ......+||++|+||.|+.| .+++||+++.||+|++|..+  +.+++++++
T Consensus       164 ~~ig~~~~i~~~v~~~~~~~~--~~~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kd--Vp~~~vv~G  234 (241)
T d1ssqa_         164 SVIENDVSILQGVTLGGTGKE--SGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAAG  234 (241)
T ss_dssp             CEECTTCEECTTCEEECCSSS--CSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEET
T ss_pred             ceecCCeeecccccccccccC--CCCCCCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCC--CCCCCEEEe
Confidence            345666666677776654332  12346889999999999966 55999999999999999986  467766653

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.92  E-value=1.6e-09  Score=93.70  Aligned_cols=46  Identities=17%  Similarity=0.064  Sum_probs=20.6

Q ss_pred             eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEecc
Q 024153          137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGN  184 (271)
Q Consensus       137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~  184 (271)
                      +.|+++++|+.++.|.+++.|++++.|++.+....+  +.+..++.|+
T Consensus       267 ~~I~~~a~I~g~~~I~~~v~i~~~a~v~a~~~~~~~--l~g~~~i~G~  312 (320)
T d2f9ca1         267 VLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIH--LRGPKVINGE  312 (320)
T ss_dssp             EEECSSCEEESSEEECSEEEECSSCEEECCSSCCEE--ECSSEEECSS
T ss_pred             eEECCCcEEcccCEEeCCCEECCCeEEEEecCCeEE--ccCCcEEcCc
Confidence            444444444444444444444444444444433322  4444444443