Citrus Sinensis ID: 024166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEKRAPV
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHcccccc
Coil and Loop (DISEMBL)
MMNPWKTYVKLSAVLMgshgltkgslAFLNYPAQLMFKSTKVLPVMVMgafipglrrkypaHEYVSALLLVVGLILFTLadaqtspnfsMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTvvglpmlippmlltGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIftkplteqhgTGLLLIAMGITlkllpaddkpikrtatSSFKVNIRKlsfsereeadeekrapv
Flexible Loop (DISEMBL)
MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKllpaddkpikrtatssfkvnirklsfsereeadeekrapv
Low Complexity Region (SEG)
MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYvsalllvvglilftlADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEKRAPV
Disordered region (IsUnstruct)
****WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD***********************************
Disordered Region (DISOPRED)
*MNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL***************************************
Disordered Region (DISEMBL)
MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSF**************
Disordered Region (DISPRO)
MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD**********************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEKRAPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9LDX3	349	UDP-galactose/UDP-glucose	yes	no	0.981	0.762	0.809	1e-117
Q29Q28	345	UDP-galactose/UDP-glucose	no	no	0.985	0.773	0.783	1e-114
Q29EY2	392	Adenosine 3'-phospho 5'-p	yes	no	0.896	0.619	0.380	2e-39
Q9VVD9	396	Adenosine 3'-phospho 5'-p	yes	no	0.848	0.580	0.382	4e-38
Q9H1N7	401	Adenosine 3'-phospho 5'-p	yes	no	0.867	0.586	0.364	2e-36
Q17CE7	382	Adenosine 3'-phospho 5'-p	N/A	no	0.896	0.636	0.366	1e-35
Q5R831	401	Adenosine 3'-phospho 5'-p	yes	no	0.867	0.586	0.359	2e-35
Q922Q5	369	Adenosine 3'-phospho 5'-p	no	no	0.867	0.636	0.368	8e-35
Q7Q5D4	377	Adenosine 3'-phospho 5'-p	yes	no	0.911	0.655	0.345	4e-34
Q61LC0	363	Adenosine 3'-phospho 5'-p	N/A	no	0.841	0.628	0.35	2e-31

>sp|Q9LDX3|UTR4_ARATH UDP-galactose/UDP-glucose transporter 4 OS=Arabidopsis thaliana GN=UTR4 PE=2 SV=1

 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/268 (80%), Positives = 239/268 (89%), Gaps = 2/268 (0%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLS VLMGSHGLTKGSLA+LNYPAQ+MFKSTKVLPVMVMGAFIPGLRRKYP
Sbjct: 81  MVNPWKTYVKLSGVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYP 140

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEY+SA+LLV+GLILFTLADA TSPNFS+IGV+MISGALIMD+FLGNLQEAIFTMNPET
Sbjct: 141 VHEYISAMLLVIGLILFTLADAHTSPNFSIIGVMMISGALIMDAFLGNLQEAIFTMNPET 200

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCSTVVGLP L+ PM+LTGELF AWNSC+QH YVYGVLVFEAMATFIGQVSVLS
Sbjct: 201 TQMEMLFCSTVVGLPFLLAPMILTGELFTAWNSCAQHPYVYGVLVFEAMATFIGQVSVLS 260

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240
           LIALFGAATTAM+TTARKAVTLLLSYLIFTKPLTEQHGTGLLLI MGI LK++P  +   
Sbjct: 261 LIALFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGTGLLLIFMGIILKMVPDPNPNP 320

Query: 241 KRTATSSFKVNIRKLSFSEREEADEEKR 268
           K + +      + ++ F   +E DEE R
Sbjct: 321 KSSGSGQTPGKLERVKF--EKEDDEESR 346

Sugar transporter involved in the transport of nucleotide-sugars from cytoplasm into the Golgi and/or the endoplasmic reticulum.
Arabidopsis thaliana (taxid: 3702)

>sp|Q29Q28|UTR2_ARATH UDP-galactose/UDP-glucose transporter 2 OS=Arabidopsis thaliana GN=UTR2 PE=2 SV=1

 Score =  410 bits (1055), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/272 (78%), Positives = 242/272 (88%), Gaps = 5/272 (1%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           ++NP +TYVKLSAVLMGSHGLTKGSLA+LNYPAQ+MFKSTKVLPVM+MGAFIPGLRRKYP
Sbjct: 78  IVNPMRTYVKLSAVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYP 137

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEY+SA LLV+GLILFTLADAQ SPNFSMIG++MI+GALIMD+FLGNLQEAIFTMNPET
Sbjct: 138 VHEYISAFLLVLGLILFTLADAQMSPNFSMIGIMMITGALIMDAFLGNLQEAIFTMNPET 197

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCSTVVGLP L  PM+LTGE+F+AW +C+QH YVYGVLVFEAMATFIGQVSVLS
Sbjct: 198 TQMEMLFCSTVVGLPFLFVPMVLTGEVFRAWTACAQHPYVYGVLVFEAMATFIGQVSVLS 257

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK-P 239
           LIALFGAATTA++TTARK VTLLLSYLIFTKPLTEQHG+GLLLIAMGI LK++P D K P
Sbjct: 258 LIALFGAATTALITTARKGVTLLLSYLIFTKPLTEQHGSGLLLIAMGIVLKMVPMDSKAP 317

Query: 240 IKRTATSSFKVNIRKLSFSEREEADEEKRAPV 271
            K  A  + ++        +REE DEE+++ V
Sbjct: 318 AKIPARPAVRIAGGD---GDREE-DEERKSLV 345

Sugar transporter involved in the transport of UDP-galactose form the cytoplasm into the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q29EY2|S35B3_DROPS Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Drosophila pseudoobscura pseudoobscura GN=Papst2 PE=3 SV=2

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/247 (38%), Positives = 149/247 (60%), Gaps = 4/247 (1%)

Query: 4   PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
           P KTY+ L+A+ +G+ GL+  SL +LNYP Q++FK  K++PV+V    I G  ++Y   +
Sbjct: 131 PMKTYLVLAALTLGTMGLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQG--KRYGPLD 188

Query: 64  YVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
           + +A  + +GL  FTLAD+Q +PNF+++GV MISGAL+ D+ +GN+QE     +   +  
Sbjct: 189 FAAASCMCIGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKAMKEHKAPSS- 247

Query: 124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
           E++F S  +G   L   ML+TG  F  +  C +H L  +G     +++ ++G   VL+L+
Sbjct: 248 EVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPLQTFGYGFLFSLSGYLGIQFVLALV 307

Query: 183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKR 242
              GA   A VTTARKAVT+  S+++F+KP T Q+    L++ +GI L +    +K    
Sbjct: 308 RSSGAPIAATVTTARKAVTIAFSFVLFSKPFTVQYLWSGLIVVLGIYLNVYSKKNKLTFA 367

Query: 243 TATSSFK 249
              S FK
Sbjct: 368 DIRSRFK 374

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Essential for viability. Involved in glycosaminoglycan synthesis and the subsequent signaling. May be involved in hh and dpp signaling by controlling the sulfation of heparan sulfate (HS).

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VVD9|S35B3_DROME Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Drosophila melanogaster GN=Papst2 PE=1 SV=2

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 146/238 (61%), Gaps = 8/238 (3%)

Query: 4   PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
           P +TY+ L+A+ +G+ GL+  SL +LNYP Q++FK  K++PV+V    I G  ++Y   +
Sbjct: 135 PMRTYLILAALTLGTMGLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQG--KRYGLLD 192

Query: 64  YVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
           + +A  + +GL  FTLAD+Q +PNF+++GV MISGAL+ D+ +GN+QE       +    
Sbjct: 193 FAAATCMCIGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKA-MREFKAPSS 251

Query: 124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH---LYVYGVLVFEAMATFIGQVSVLS 180
           E++F S  +G   L   ML+TG  F  +  C +H    + YG L   +++ ++G   VL+
Sbjct: 252 EVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPVETFGYGFLF--SLSGYLGIQFVLA 309

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 238
           L+   GA   A VTTARKAVT+  S+++F+KP T Q+    L++ +GI L +    +K
Sbjct: 310 LVRSSGAPIAATVTTARKAVTIAFSFVLFSKPFTLQYLWSGLIVVLGIYLNVYSKRNK 367

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Essential for viability. Involved in glycosaminoglycan synthesis and the subsequent signaling. May be involved in hh and dpp signaling by controlling the sulfation of heparan sulfate (HS).

Drosophila melanogaster (taxid: 7227)

>sp|Q9H1N7|S35B3_HUMAN Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Homo sapiens GN=SLC35B3 PE=1 SV=1

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 144/239 (60%), Gaps = 4/239 (1%)

Query: 4   PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
           P KTY+ ++ + +G+ GL+  SL +LNYP Q++FK  K++PVM+ G FI G  ++Y   +
Sbjct: 142 PGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQG--KRYNVAD 199

Query: 64  YVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
             +A+ + +GLI FTLAD+ T+PNF++ GV++IS AL  D+ +GN+QE    ++   +  
Sbjct: 200 VSAAICMSLGLIWFTLADSTTAPNFNLTGVVLISLALCADAVIGNVQEKAMKLH-NASNS 258

Query: 124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
           EM+  S  +G   ++  +  T  L  A   C+++ +  YG     ++  + G   VL+LI
Sbjct: 259 EMVLYSYSIGFVYILLGLTCTSGLGPAVTFCAKNPVRTYGYAFLFSLTGYFGISFVLALI 318

Query: 183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 241
            +FGA     VTT RKA+T++LS++ F KP T Q+    LL+ +GI L +   +   I+
Sbjct: 319 KIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGIFLNVYSKNMDKIR 377

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Compensates for the insufficient expression of SLC35B2/PAPST1 during the synthesis of sulfated glycoconjugates in the colon.

Homo sapiens (taxid: 9606)

>sp|Q17CE7|S35B3_AEDAE Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Aedes aegypti GN=Papst2 PE=3 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/251 (36%), Positives = 149/251 (59%), Gaps = 8/251 (3%)

Query: 4   PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
           P KTYV L+ + +G+ GL+  SL +LNYP Q++FK  K++PV++    I G  +K+   +
Sbjct: 116 PMKTYVLLAFLTLGTMGLSNSSLGYLNYPTQVIFKCCKLVPVLIGSILIQG--KKHGPLD 173

Query: 64  YVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
           +++A+ + +GL LFTLAD+Q SPNF+  GV++IS AL+ D+ +GN+QE     + +    
Sbjct: 174 FLAAIAMCLGLTLFTLADSQVSPNFNPFGVLLISLALLCDAAIGNVQEKAMREH-KAPNN 232

Query: 124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
           E++  S  +G   L   MLLTG LF     C ++ +  +G     +++ ++G   VL+L+
Sbjct: 233 EVVIYSYGIGFVYLSVIMLLTGNLFSGITFCMKYPVETFGYAFLFSLSGYLGIQIVLTLV 292

Query: 183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK---- 238
              GA   A VTTARKAVT+ LS++ F+KP T  +    L++ +GI L +     K    
Sbjct: 293 RTCGAPLAATVTTARKAVTIALSFVFFSKPFTINYLWSGLIVVLGIYLNVYSKRSKLTFA 352

Query: 239 PIKRTATSSFK 249
            + RTA   ++
Sbjct: 353 DLNRTAERIYR 363

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Essential for viability. Involved in glycosaminoglycan synthesis and the subsequent signaling. May be involved in hh and dpp signaling by controlling the sulfation of heparan sulfate (HS).

Aedes aegypti (taxid: 7159)

>sp|Q5R831|S35B3_PONAB Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Pongo abelii GN=SLC35B3 PE=2 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 143/239 (59%), Gaps = 4/239 (1%)

Query: 4   PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
           P KTY+ ++ + +G+ GL+  SL +LNYP Q++FK  K++PVM+ G FI G  ++Y   +
Sbjct: 142 PGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQG--KRYNVAD 199

Query: 64  YVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
             +A+ + +GLI FTLAD+  +PNF++ GV++IS AL  D+ +GN+QE    ++   +  
Sbjct: 200 VSAAICMSLGLIWFTLADSTIAPNFNLTGVVLISLALCADAVIGNVQEKAMKLH-NASNS 258

Query: 124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
           EM+  S  +G   ++  +  T  L  A   C+++ +  YG     ++  + G   VL+LI
Sbjct: 259 EMVLYSYSIGFVYILLGLTCTSGLGPAVTFCAKNPVRTYGYAFLFSLTGYFGISFVLALI 318

Query: 183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 241
            +FGA     VTT RKA+T++LS++ F KP T Q+    LL+ +GI L +   +   I+
Sbjct: 319 KIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVFLGIFLNVYSKNMDKIR 377

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Compensates for the insufficient expression of SLC35B2/PAPST1 during the synthesis of sulfated glycoconjugates in the colon.

Pongo abelii (taxid: 9601)

>sp|Q922Q5|S35B3_MOUSE Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Mus musculus GN=Slc35b3 PE=2 SV=1

 Score =  147 bits (371), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 143/239 (59%), Gaps = 4/239 (1%)

Query: 4   PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
           P KTY+ ++ + +G+ GL+  SL +LNYP Q++FK  K++PVM+ G FI G  ++Y   +
Sbjct: 110 PGKTYMLIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQG--KRYNLAD 167

Query: 64  YVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
             +A+ + +GLI FTLAD+  +PNF++ GV++IS AL  D+ +GN+QE    ++   +  
Sbjct: 168 VSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVIGNVQEKAMKLH-NASNS 226

Query: 124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
           EM+  S  +G   ++  +  T  L  A   CS++ +  YG     ++  + G   VL+LI
Sbjct: 227 EMVLYSYSIGFVYILLGLSCTSGLGPAVAFCSKNPVGTYGYAFLFSLTGYFGISFVLALI 286

Query: 183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 241
            +FGA     VTT RKA+T++LS+L F KP T Q+    LL+ +GI L +   +   I+
Sbjct: 287 KIFGALLAVTVTTGRKAMTVVLSFLFFAKPFTFQYIWSGLLVVLGIFLNVYSKNMDKIR 345

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Compensates for the insufficient expression of SLC35B2/PAPST1 during the synthesis of sulfated glycoconjugates in the colon.

Mus musculus (taxid: 10090)

>sp|Q7Q5D4|S35B3_ANOGA Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Anopheles gambiae GN=Papst2 PE=3 SV=4

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 147/255 (57%), Gaps = 8/255 (3%)

Query: 4   PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
           P +TY  L+ + +G+ GL+  S+ +LNYP Q++FK  K++PV++    I G  +K+   +
Sbjct: 110 PLRTYALLAFLTLGTMGLSNSSVGYLNYPTQVIFKCCKLIPVLIGSVLIQG--KKHGPMD 167

Query: 64  YVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
           + +A  + +GLILFTLAD+Q  P+F+  GV +IS AL+ D+ +GN+QE     +      
Sbjct: 168 FFAATAMCLGLILFTLADSQVQPDFNRFGVFLISLALLCDAAIGNVQEKAMREH-RAPNN 226

Query: 124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
           E++  S  +G   L   MLL+G L +    C+++ +  YG     ++  ++G   VL+L+
Sbjct: 227 EVVIYSYGIGFVYLAVIMLLSGHLVQGVAFCARYPMETYGYAFLFSLTGYLGIQIVLTLV 286

Query: 183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK---- 238
              GA   A VTTARKAVT+ LS++ F+KP T Q+    L++  GI L +     K    
Sbjct: 287 RTCGAPLAATVTTARKAVTIALSFVFFSKPFTIQYLWSGLIVVFGIYLNVYSKRSKLTFA 346

Query: 239 PIKRTATSSFKVNIR 253
            + R A++ ++  +R
Sbjct: 347 DLGRMASTVYRWVLR 361

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi. Essential for viability. Involved in glycosaminoglycan synthesis and the subsequent signaling. May be involved in hh and dpp signaling by controlling the sulfation of heparan sulfate (HS).

Anopheles gambiae (taxid: 7165)

>sp|Q61LC0|S35B3_CAEBR Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Caenorhabditis briggsae GN=pst-2 PE=3 SV=1

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 140/240 (58%), Gaps = 12/240 (5%)

Query: 2   MNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPA 61
           M PW+ Y  ++   + + GL+  S+ +LNYP Q++FK  K++PV++ G  I G  ++Y  
Sbjct: 101 MIPWRIYGVIAFFTVATMGLSNASVGYLNYPTQVIFKCCKLIPVLIGGILIQG--KRYGW 158

Query: 62  HEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETT 121
            +  +A+L+ +G+I+FTLAD + SPNF   G IMISGAL+ D+ +GN+QE        ++
Sbjct: 159 IDISAAILMSLGIIMFTLADNKVSPNFDSRGYIMISGALLADAVIGNIQEKNMKKYGGSS 218

Query: 122 QMEMLFCSTVVGLPMLIPPMLLTGELFKAW-----NSCSQHLYVYGVLVFEAMATFIGQV 176
             E++  S  +G   +   ++L+GE+F A      NS     Y    L+F  +  ++G  
Sbjct: 219 N-EVVLYSYGIGSVFIFTYVVLSGEIFSAIPFFLENSWKTFGY---ALIFSFLG-YLGVN 273

Query: 177 SVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236
            VL+ I +FGA     VTT RKA+T++LS+L+F+KP T ++     ++ + I L L   +
Sbjct: 274 VVLTHIKVFGALVAVTVTTLRKALTIILSFLLFSKPFTIEYVYAGSVVMLAIYLNLYSKN 333

Mediates the transport of adenosine 3'-phospho 5'-phosphosulfate (PAPS), from cytosol into Golgi. PAPS is a universal sulfuryl donor for sulfation events that take place in the Golgi.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
225453883	348	PREDICTED: adenosine 3'-phospho 5'-phosp	0.985	0.767	0.858	1e-122
255541442	350	Adenosine 3'-phospho 5'-phosphosulfate t	0.981	0.76	0.844	1e-122
224127530	359	predicted protein [Populus trichocarpa]	0.985	0.743	0.835	1e-121
356532050	358	PREDICTED: adenosine 3'-phospho 5'-phosp	0.996	0.754	0.825	1e-120
356568332	358	PREDICTED: adenosine 3'-phospho 5'-phosp	0.992	0.751	0.825	1e-120
449432205	355	PREDICTED: UDP-galactose/UDP-glucose tra	0.981	0.749	0.826	1e-119
357507127	336	Adenosine 3'-phospho 5'-phosphosulfate t	0.988	0.797	0.799	1e-118
357507121	360	Adenosine 3'-phospho 5'-phosphosulfate t	0.988	0.744	0.799	1e-117
224074825	352	predicted protein [Populus trichocarpa]	0.988	0.761	0.797	1e-117
356532052	371	PREDICTED: adenosine 3'-phospho 5'-phosp	0.996	0.727	0.788	1e-117

>gi|225453883|ref|XP_002273090.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2 [Vitis vinifera] gi|296089139|emb|CBI38842.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/268 (85%), Positives = 244/268 (91%), Gaps = 1/268 (0%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP
Sbjct: 79  MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 138

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
           AHEYVSA+LLVVGLILFTLADA TSPNFS+IGV+M+SGAL+MDSFLGNLQEAIFT+NP+T
Sbjct: 139 AHEYVSAVLLVVGLILFTLADAHTSPNFSVIGVLMVSGALVMDSFLGNLQEAIFTLNPDT 198

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCSTV+GLP LIPPML TGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS
Sbjct: 199 TQMEMLFCSTVIGLPFLIPPMLFTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 258

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240
           LIA+FGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHG+GLLLIAMGI LKLLP D+KP 
Sbjct: 259 LIAIFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGSGLLLIAMGIVLKLLP-DNKPY 317

Query: 241 KRTATSSFKVNIRKLSFSEREEADEEKR 268
           K+ +  S         F   EE  EE R
Sbjct: 318 KKASLESPTTEKTANPFPREEEKSEEMR 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541442|ref|XP_002511785.1| Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis] gi|223548965|gb|EEF50454.1| Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/270 (84%), Positives = 250/270 (92%), Gaps = 4/270 (1%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQ+MFKSTKVLPVMVMGAFIPGLRR+YP
Sbjct: 79  MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRRYP 138

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEYVSALLLVVGLILFTLADA+TSPNF  IGV+MISGALIMD+FLGNLQEAIFT+NPET
Sbjct: 139 VHEYVSALLLVVGLILFTLADAKTSPNFHTIGVVMISGALIMDAFLGNLQEAIFTINPET 198

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCS+VVGLP LIPPM+LTGELF+AWNSCSQH YVYGVL+FEAMATF+GQVSVLS
Sbjct: 199 TQMEMLFCSSVVGLPFLIPPMILTGELFRAWNSCSQHPYVYGVLIFEAMATFVGQVSVLS 258

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240
           LIALFGAATTAMVTTARKAVTLLLSY+IFTKPLTEQHGTGLLLIAMGITLKLLP D+ P 
Sbjct: 259 LIALFGAATTAMVTTARKAVTLLLSYMIFTKPLTEQHGTGLLLIAMGITLKLLP-DNNPH 317

Query: 241 KRTATSSFKVNIRKLSFSERE---EADEEK 267
           KR +++S K  I K S ++++    + EEK
Sbjct: 318 KRNSSNSSKTKIHKSSSTDQQGTVNSQEEK 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127530|ref|XP_002320097.1| predicted protein [Populus trichocarpa] gi|222860870|gb|EEE98412.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/279 (83%), Positives = 251/279 (89%), Gaps = 12/279 (4%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQ+MFKSTKVLPVMVMGAFIPGLRRKYP
Sbjct: 79  MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYP 138

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
           AHEY SALLLV GLI+FTLADA+TSPNFS+IGV+MISGALIMD+FLGNLQEAIFT++PET
Sbjct: 139 AHEYASALLLVAGLIIFTLADAKTSPNFSIIGVLMISGALIMDAFLGNLQEAIFTLSPET 198

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCS+VVGLP LIPPM+LTGELFKAWNSCSQH YVY VLVFEAMATFIGQVSVLS
Sbjct: 199 TQMEMLFCSSVVGLPFLIPPMVLTGELFKAWNSCSQHPYVYVVLVFEAMATFIGQVSVLS 258

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240
           LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP D  P 
Sbjct: 259 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP-DKNPY 317

Query: 241 KRTATS-SFKVNIRKLSFSEREE----------ADEEKR 268
           KR+++S + K  I K S ++ E+           DEEKR
Sbjct: 318 KRSSSSITKKAKIEKPSTNDEEKRVFQLEIEAAEDEEKR 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532050|ref|XP_003534587.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2-like isoform 1 [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/280 (82%), Positives = 248/280 (88%), Gaps = 10/280 (3%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQ+MFKSTKVLPVM+MGAFIPGLRRKYP
Sbjct: 79  MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYP 138

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEY+SA+LLVVGLILFTLADAQTSPNFSMIGVIMISGAL+MDSFLGNLQEAIFTMNPET
Sbjct: 139 LHEYISAILLVVGLILFTLADAQTSPNFSMIGVIMISGALVMDSFLGNLQEAIFTMNPET 198

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCSTVVGLP LIPPML TGELFKAW SCSQH YVYGVLVFEAMATFIGQVSVLS
Sbjct: 199 TQMEMLFCSTVVGLPFLIPPMLFTGELFKAWTSCSQHPYVYGVLVFEAMATFIGQVSVLS 258

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK-- 238
           LIA+FGAATTAM+TTARKAVTLLLSYLIFTKPLTEQHG+GLLLIAMGITLK+LP D+K  
Sbjct: 259 LIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLIAMGITLKMLP-DNKFT 317

Query: 239 --PIKRTATSSFKVNIRKLSFSER-----EEADEEKRAPV 271
               KR  TSS + N  K +  E         + ++R P+
Sbjct: 318 STKTKRVLTSSARDNGAKSTSDEELGTLPNSGENDERRPL 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568332|ref|XP_003552365.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2-like isoform 1 [Glycine max]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/281 (82%), Positives = 249/281 (88%), Gaps = 12/281 (4%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQ+MFKSTKVLPVM+MGAFIPGLRRKYP
Sbjct: 79  MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYP 138

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEY+SA+LLVVGLILFTLADAQTSPNFSMIGVIMISGAL+MDSFLGNLQEAIFTMNPET
Sbjct: 139 LHEYISAILLVVGLILFTLADAQTSPNFSMIGVIMISGALVMDSFLGNLQEAIFTMNPET 198

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCSTVVGLP LIPPML TGELFKAW SCSQH YVYGVLVFEAMATFIGQVSVLS
Sbjct: 199 TQMEMLFCSTVVGLPFLIPPMLFTGELFKAWTSCSQHPYVYGVLVFEAMATFIGQVSVLS 258

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK-- 238
           LIA+FGAATTAM+TTARKAVTLLLSYLIFTKPLTEQHG+GLLLIAMGITLK+LP D K  
Sbjct: 259 LIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLIAMGITLKMLP-DSKFT 317

Query: 239 --PIKRTATSSFKVNIRKLSFSERE------EADEEKRAPV 271
               KR  TSS + NI   S ++ E        + ++R P+
Sbjct: 318 STKTKRVLTSSAR-NIGAKSTNDEELGTLPNSGENDERRPL 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432205|ref|XP_004133890.1| PREDICTED: UDP-galactose/UDP-glucose transporter 4-like [Cucumis sativus]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/276 (82%), Positives = 247/276 (89%), Gaps = 10/276 (3%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVM+MGAFIPGLRRKYP
Sbjct: 79  MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMIMGAFIPGLRRKYP 138

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEY+SA+LLVVGLI+FTLADAQTSPNFS++GV+MISGALIMDSFLGNLQEAIFTMNPET
Sbjct: 139 PHEYISAVLLVVGLIIFTLADAQTSPNFSILGVVMISGALIMDSFLGNLQEAIFTMNPET 198

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCSTVVGLP LIPPMLLTGELFKAW SCSQH YVYGVLVFEAMAT+IGQVSVLS
Sbjct: 199 TQMEMLFCSTVVGLPFLIPPMLLTGELFKAWTSCSQHKYVYGVLVFEAMATYIGQVSVLS 258

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240
           LIALFGAATTAM+TTARKAVTLLLSYLIFTKPL+EQH TGLLLI MGITLKLLP D KP 
Sbjct: 259 LIALFGAATTAMITTARKAVTLLLSYLIFTKPLSEQHATGLLLIGMGITLKLLP-DYKP- 316

Query: 241 KRTATSSFKVN--------IRKLSFSEREEADEEKR 268
           K  A+S+ + +          +++     E DEE+R
Sbjct: 317 KNKASSNVRTSKPPANNGKDNEMAHQIEIEKDEERR 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507127|ref|XP_003623852.1| Adenosine 3'-phospho 5'-phosphosulfate transporter [Medicago truncatula] gi|355498867|gb|AES80070.1| Adenosine 3'-phospho 5'-phosphosulfate transporter [Medicago truncatula]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/279 (79%), Positives = 245/279 (87%), Gaps = 11/279 (3%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQ+MFKSTKVLPVM+MGAFIPGLRRKYP
Sbjct: 55  MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYP 114

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEY+SA+LLVVGLILFTLADA TSPNFS++GV+MI+GAL+MDSFLGNLQEAIFTMNP+T
Sbjct: 115 IHEYISAILLVVGLILFTLADAHTSPNFSVVGVVMITGALVMDSFLGNLQEAIFTMNPDT 174

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCSTVVGLP LIPPML TGELFKAW SCSQH YVYGVLVFEAMATFIGQVSVLS
Sbjct: 175 TQMEMLFCSTVVGLPFLIPPMLFTGELFKAWTSCSQHPYVYGVLVFEAMATFIGQVSVLS 234

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240
           LIALFGAATTAM+TTARKAVTLLLSYLIFTKPLTEQHG+GL+LIAMGITLK+LP +   I
Sbjct: 235 LIALFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLILIAMGITLKMLPENKPAI 294

Query: 241 -KRTATSSFKVNIRKLSFSERE----------EADEEKR 268
            KR   SS + +  K +  + E            D+E+R
Sbjct: 295 PKRALNSSHRDSSAKSTTGDEELGMGTLHGSVGEDDERR 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507121|ref|XP_003623849.1| Adenosine 3'-phospho 5'-phosphosulfate transporter [Medicago truncatula] gi|124360233|gb|ABN08246.1| Solute carrier family 35 member B3, related [Medicago truncatula] gi|355498864|gb|AES80067.1| Adenosine 3'-phospho 5'-phosphosulfate transporter [Medicago truncatula]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/279 (79%), Positives = 245/279 (87%), Gaps = 11/279 (3%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQ+MFKSTKVLPVM+MGAFIPGLRRKYP
Sbjct: 79  MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYP 138

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEY+SA+LLVVGLILFTLADA TSPNFS++GV+MI+GAL+MDSFLGNLQEAIFTMNP+T
Sbjct: 139 IHEYISAILLVVGLILFTLADAHTSPNFSVVGVVMITGALVMDSFLGNLQEAIFTMNPDT 198

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQMEMLFCSTVVGLP LIPPML TGELFKAW SCSQH YVYGVLVFEAMATFIGQVSVLS
Sbjct: 199 TQMEMLFCSTVVGLPFLIPPMLFTGELFKAWTSCSQHPYVYGVLVFEAMATFIGQVSVLS 258

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240
           LIALFGAATTAM+TTARKAVTLLLSYLIFTKPLTEQHG+GL+LIAMGITLK+LP +   I
Sbjct: 259 LIALFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLILIAMGITLKMLPENKPAI 318

Query: 241 -KRTATSSFKVNIRKLSFSERE----------EADEEKR 268
            KR   SS + +  K +  + E            D+E+R
Sbjct: 319 PKRALNSSHRDSSAKSTTGDEELGMGTLHGSVGEDDERR 357

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074825|ref|XP_002304463.1| predicted protein [Populus trichocarpa] gi|222841895|gb|EEE79442.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/271 (79%), Positives = 244/271 (90%), Gaps = 3/271 (1%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTY KLSAVLMGSHGLTKGSLAFLNYPAQ+MFKSTKVLPVM+MGAFIPGLRRKYP
Sbjct: 79  MVNPWKTYWKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMLMGAFIPGLRRKYP 138

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEY+SALLLV+GLILFTLADAQTSPNFS+IGV+MISGALIMDS +GNLQEAIFTMNP+T
Sbjct: 139 VHEYISALLLVIGLILFTLADAQTSPNFSIIGVLMISGALIMDSLMGNLQEAIFTMNPDT 198

Query: 121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
           TQ+E+LFCST+VGLP L+PPM+LTGELFKAW SC+QH YVYGVLVFEAMATF+GQ+SVLS
Sbjct: 199 TQIEVLFCSTIVGLPFLLPPMILTGELFKAWKSCAQHPYVYGVLVFEAMATFVGQISVLS 258

Query: 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240
           LIA+FGAA TAM+TTARKAVTLLLSY+IFTKPLTEQHGTGLLL+AMGI LK++P D KP 
Sbjct: 259 LIAIFGAAATAMITTARKAVTLLLSYMIFTKPLTEQHGTGLLLLAMGIILKMVPVDYKPP 318

Query: 241 KRTATSSFKVNIRK---LSFSEREEADEEKR 268
            R+A    K + ++   L  S + E  EEKR
Sbjct: 319 TRSAARHGKSHFKEEISLGDSRKAEGAEEKR 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532052|ref|XP_003534588.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2-like isoform 2 [Glycine max]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/293 (78%), Positives = 248/293 (84%), Gaps = 23/293 (7%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
           M+NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQ+MFKSTKVLPVM+MGAFIPGLRRKYP
Sbjct: 79  MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYP 138

Query: 61  AHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
            HEY+SA+LLVVGLILFTLADAQTSPNFSMIGVIMISGAL+MDSFLGNLQEAIFTMNPET
Sbjct: 139 LHEYISAILLVVGLILFTLADAQTSPNFSMIGVIMISGALVMDSFLGNLQEAIFTMNPET 198

Query: 121 -------------TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE 167
                        TQMEMLFCSTVVGLP LIPPML TGELFKAW SCSQH YVYGVLVFE
Sbjct: 199 TQPYKISNTFSLLTQMEMLFCSTVVGLPFLIPPMLFTGELFKAWTSCSQHPYVYGVLVFE 258

Query: 168 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMG 227
           AMATFIGQVSVLSLIA+FGAATTAM+TTARKAVTLLLSYLIFTKPLTEQHG+GLLLIAMG
Sbjct: 259 AMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLIAMG 318

Query: 228 ITLKLLPADDK----PIKRTATSSFKVNIRKLSFSER-----EEADEEKRAPV 271
           ITLK+LP D+K      KR  TSS + N  K +  E         + ++R P+
Sbjct: 319 ITLKMLP-DNKFTSTKTKRVLTSSARDNGAKSTSDEELGTLPNSGENDERRPL 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2195032	349	AT1G12600 "AT1G12600" [Arabido	0.981	0.762	0.768	2.5e-104
UNIPROTKB|Q29EY2	392	Papst2 "Adenosine 3'-phospho 5	0.896	0.619	0.356	9.2e-36
ZFIN|ZDB-GENE-060312-46	386	slc35b3 "solute carrier family	0.907	0.637	0.34	1.7e-34
FB|FBgn0036695	396	Papst2 "PAPS transporter 2" [D	0.856	0.585	0.351	4.6e-34
UNIPROTKB|F1P4W7	387	SLC35B3 "Uncharacterized prote	0.915	0.640	0.343	1.2e-33
UNIPROTKB|F1RV99	369	SLC35B3 "Uncharacterized prote	0.867	0.636	0.343	2.9e-32
UNIPROTKB|Q9H1N7	401	SLC35B3 "Adenosine 3'-phospho	0.833	0.563	0.343	3.7e-32
UNIPROTKB|Q17CE7	382	Papst2 "Adenosine 3'-phospho 5	0.896	0.636	0.338	3.7e-32
UNIPROTKB|E2RJI8	369	SLC35B3 "Uncharacterized prote	0.833	0.612	0.347	4.7e-32
UNIPROTKB|E1BLS0	430	SLC35B3 "Uncharacterized prote	0.833	0.525	0.339	2e-31

TAIR|locus:2195032 AT1G12600 "AT1G12600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 206/268 (76%), Positives = 226/268 (84%)

Query:     1 MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 60
             M+NPWKTYVKLS VLMGSHGLTKGSLA+LNYPAQ+MFKSTKVLPVMVMGAFIPGLRRKYP
Sbjct:    81 MVNPWKTYVKLSGVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYP 140

Query:    61 AHEYXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 120
              HEY               ADA TSPNFS+IGV+MISGALIMD+FLGNLQEAIFTMNPET
Sbjct:   141 VHEYISAMLLVIGLILFTLADAHTSPNFSIIGVMMISGALIMDAFLGNLQEAIFTMNPET 200

Query:   121 TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 180
             TQMEMLFCSTVVGLP L+ PM+LTGELF AWNSC+QH YVYGVLVFEAMATFIGQVSVLS
Sbjct:   201 TQMEMLFCSTVVGLPFLLAPMILTGELFTAWNSCAQHPYVYGVLVFEAMATFIGQVSVLS 260

Query:   181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240
             LIALFGAATTAM+TTARKAVTLLLSYLIFTKPLTEQHGTGLLLI MGI LK++P  +   
Sbjct:   261 LIALFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGTGLLLIFMGIILKMVPDPNPNP 320

Query:   241 KRTATSSFKVNIRKLSFSEREEADEEKR 268
             K + +      + ++ F E+E+ DEE R
Sbjct:   321 KSSGSGQTPGKLERVKF-EKED-DEESR 346

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q29EY2 Papst2 "Adenosine 3'-phospho 5'-phosphosulfate transporter 2" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 88/247 (35%), Positives = 140/247 (56%)

Query:     4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
             P KTY+ L+A+ +G+ GL+  SL +LNYP Q++FK  K++PV+V    I G  ++Y   +
Sbjct:   131 PMKTYLVLAALTLGTMGLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQG--KRYGPLD 188

Query:    64 YXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
             +               AD+Q +PNF+++GV MISGAL+ D+ +GN+QE     + +    
Sbjct:   189 FAAASCMCIGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKAMKEH-KAPSS 247

Query:   124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
             E++F S  +G   L   ML+TG  F  +  C +H L  +G     +++ ++G   VL+L+
Sbjct:   248 EVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPLQTFGYGFLFSLSGYLGIQFVLALV 307

Query:   183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKR 242
                GA   A VTTARKAVT+  S+++F+KP T Q+    L++ +GI L +    +K    
Sbjct:   308 RSSGAPIAATVTTARKAVTIAFSFVLFSKPFTVQYLWSGLIVVLGIYLNVYSKKNKLTFA 367

Query:   243 TATSSFK 249
                S FK
Sbjct:   368 DIRSRFK 374

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0046963 "3'-phosphoadenosine 5'-phosphosulfate transport" evidence=ISS

GO:0046964 "3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity" evidence=ISS

ZFIN|ZDB-GENE-060312-46 slc35b3 "solute carrier family 35, member B3" [Danio rerio (taxid:7955)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 85/250 (34%), Positives = 140/250 (56%)

Query:     4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
             P KTY+ ++ + +G+ GL+  SL +LNYP Q++FK  K++PVM+ G FI G  ++Y   +
Sbjct:   127 PCKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMIGGVFIQG--KRYNVAD 184

Query:    64 YXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
                             AD++ +PNF++ GV++IS AL  D+ +GN+QE    ++   +  
Sbjct:   185 VSAALCMSLGLIWFTLADSKIAPNFNVTGVLLISLALCADAAIGNVQEKAMKLH-NGSNS 243

Query:   124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
             EM+  S  +G   ++  +L  G L  A + C+QH +  YG     ++  + G   VL+LI
Sbjct:   244 EMVLYSYSIGFVYILLGLLSLGGLGPAVSFCAQHPMTTYGYAFLFSLTGYFGISFVLALI 303

Query:   183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKR 242
              LFGA     VTT RKA+T++LS+L F+KP T Q+  G LL+  GI L +   +   +K 
Sbjct:   304 KLFGALVAVTVTTGRKAMTIVLSFLFFSKPFTFQYVWGGLLVVFGIFLNVYSKNKDKMKL 363

Query:   243 TATSSFKVNI 252
              + +  +  +
Sbjct:   364 PSLAELRKRV 373

GO:0055085 "transmembrane transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0036695 Papst2 "PAPS transporter 2" [Drosophila melanogaster (taxid:7227)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 83/236 (35%), Positives = 136/236 (57%)

Query:     4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
             P +TY+ L+A+ +G+ GL+  SL +LNYP Q++FK  K++PV+V    I G  ++Y   +
Sbjct:   135 PMRTYLILAALTLGTMGLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQG--KRYGLLD 192

Query:    64 YXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
             +               AD+Q +PNF+++GV MISGAL+ D+ +GN+QE       +    
Sbjct:   193 FAAATCMCIGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKAMR-EFKAPSS 251

Query:   124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
             E++F S  +G   L   ML+TG  F  +  C +H +  +G     +++ ++G   VL+L+
Sbjct:   252 EVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPVETFGYGFLFSLSGYLGIQFVLALV 311

Query:   183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 238
                GA   A VTTARKAVT+  S+++F+KP T Q+    L++ +GI L +    +K
Sbjct:   312 RSSGAPIAATVTTARKAVTIAFSFVLFSKPFTLQYLWSGLIVVLGIYLNVYSKRNK 367

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046964 "3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity" evidence=IDA

GO:0015012 "heparan sulfate proteoglycan biosynthetic process" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0000137 "Golgi cis cisterna" evidence=IDA

UNIPROTKB|F1P4W7 SLC35B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 87/253 (34%), Positives = 138/253 (54%)

Query:     4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
             P KTY+ ++ + +G+ GL+  SL +LNYP Q++FK  K++PVMV G FI G  ++Y   +
Sbjct:   128 PGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMVGGVFIQG--KRYNIAD 185

Query:    64 YXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
                             AD+  +PNF++ GV++IS AL  D+ +GN+QE    ++   +  
Sbjct:   186 VSAALCMSLGLIWFTLADSTVAPNFNLTGVVLISLALCADAVIGNVQEKAMKLH-NGSNS 244

Query:   124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
             EM+  S  +G   ++  +  T  L  A   CSQH +  YG     ++  + G   VL+LI
Sbjct:   245 EMVLYSYSIGFLYILLGLTCTSGLSPAVAFCSQHPIQTYGYAFLFSLTGYFGISFVLALI 304

Query:   183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKR 242
              +FGA     VTT RKA+T++LS+L F KP T Q+    LL+ +GI L +   +   IK 
Sbjct:   305 KIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQYVWSGLLVVLGIFLNVYSKNMDKIKL 364

Query:   243 TATSS-FKVNIRK 254
              +    +K N+ +
Sbjct:   365 PSLHGIWKKNVEE 377

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1RV99 SLC35B3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 82/239 (34%), Positives = 132/239 (55%)

Query:     4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
             P KTY+ ++ + +G+ GL+  SL +LNYP Q++FK  K++PVM+ G FI G  ++Y   +
Sbjct:   110 PGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQG--KRYNVAD 167

Query:    64 YXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
                             AD+  +PNF++ GVI+IS AL  D+ +GN+QE    ++   +  
Sbjct:   168 VSAALCMSLGLIWFTLADSTVAPNFNLTGVILISLALCADAVIGNVQEKAMKLH-NASNS 226

Query:   124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
             EM+  S  +G   ++  +  T  L  A   CS++ +  YG     ++  + G   VL+LI
Sbjct:   227 EMVLYSYSIGFVYILLGLTCTSGLGPAVTFCSKNPVRTYGYAFLFSLTGYFGISFVLALI 286

Query:   183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 241
              +FGA     VTT RKA+T++LS++ F KP T Q+    LL+ +GI L +   +   IK
Sbjct:   287 KIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGIFLNVYSKNMDKIK 345

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q9H1N7 SLC35B3 "Adenosine 3'-phospho 5'-phosphosulfate transporter 2" [Homo sapiens (taxid:9606)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 79/230 (34%), Positives = 130/230 (56%)

Query:     4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
             P KTY+ ++ + +G+ GL+  SL +LNYP Q++FK  K++PVM+ G FI G  ++Y   +
Sbjct:   142 PGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQG--KRYNVAD 199

Query:    64 YXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
                             AD+ T+PNF++ GV++IS AL  D+ +GN+QE    ++   +  
Sbjct:   200 VSAAICMSLGLIWFTLADSTTAPNFNLTGVVLISLALCADAVIGNVQEKAMKLH-NASNS 258

Query:   124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
             EM+  S  +G   ++  +  T  L  A   C+++ +  YG     ++  + G   VL+LI
Sbjct:   259 EMVLYSYSIGFVYILLGLTCTSGLGPAVTFCAKNPVRTYGYAFLFSLTGYFGISFVLALI 318

Query:   183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232
              +FGA     VTT RKA+T++LS++ F KP T Q+    LL+ +GI L +
Sbjct:   319 KIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGIFLNV 368

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|Q17CE7 Papst2 "Adenosine 3'-phospho 5'-phosphosulfate transporter 2" [Aedes aegypti (taxid:7159)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 85/251 (33%), Positives = 137/251 (54%)

Query:     4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
             P KTYV L+ + +G+ GL+  SL +LNYP Q++FK  K++PV++    I G  +K+   +
Sbjct:   116 PMKTYVLLAFLTLGTMGLSNSSLGYLNYPTQVIFKCCKLVPVLIGSILIQG--KKHGPLD 173

Query:    64 YXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
             +               AD+Q SPNF+  GV++IS AL+ D+ +GN+QE     + +    
Sbjct:   174 FLAAIAMCLGLTLFTLADSQVSPNFNPFGVLLISLALLCDAAIGNVQEKAMREH-KAPNN 232

Query:   124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
             E++  S  +G   L   MLLTG LF     C ++ +  +G     +++ ++G   VL+L+
Sbjct:   233 EVVIYSYGIGFVYLSVIMLLTGNLFSGITFCMKYPVETFGYAFLFSLSGYLGIQIVLTLV 292

Query:   183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK---- 238
                GA   A VTTARKAVT+ LS++ F+KP T  +    L++ +GI L +     K    
Sbjct:   293 RTCGAPLAATVTTARKAVTIALSFVFFSKPFTINYLWSGLIVVLGIYLNVYSKRSKLTFA 352

Query:   239 PIKRTATSSFK 249
              + RTA   ++
Sbjct:   353 DLNRTAERIYR 363

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0046963 "3'-phosphoadenosine 5'-phosphosulfate transport" evidence=ISS

GO:0046964 "3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity" evidence=ISS

UNIPROTKB|E2RJI8 SLC35B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 80/230 (34%), Positives = 129/230 (56%)

Query:     4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
             P KTY+ ++ + +G+ GL+  SL +LNYP Q++FK  K++PVM+ G FI G  ++Y   +
Sbjct:   110 PGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQG--KRYNIAD 167

Query:    64 YXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
                             AD+  +PNF++ GVI+IS AL  D+ +GN+QE    ++   +  
Sbjct:   168 VSAAVCMSLGLIWFTLADSTIAPNFNLTGVILISLALCADAVIGNVQEKAMKLH-NASNS 226

Query:   124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
             EM+  S  +G   ++  +  T  L  A   CS++ +  YG     ++  + G   VL+LI
Sbjct:   227 EMVLYSYSIGFVYILLGLTCTSGLGPAVTFCSKNPIQTYGYAFLFSLTGYFGISFVLALI 286

Query:   183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232
              +FGA     VTT RKA+T++LS++ F KP T Q+    LL+ +GI L +
Sbjct:   287 KIFGALLAVTVTTGRKAMTIVLSFMFFAKPFTFQYVWSGLLVVLGIFLNV 336

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E1BLS0 SLC35B3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 78/230 (33%), Positives = 127/230 (55%)

Query:     4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHE 63
             P KTY+ ++ + +G+ GL+  SL +LNYP Q++FK  K++PVM+ G FI G  ++Y   +
Sbjct:   171 PGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQG--KRYNVAD 228

Query:    64 YXXXXXXXXXXXXXXXADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 123
                             AD+  +PNF++ GV++IS AL  D+ +GN+QE    ++   +  
Sbjct:   229 VSAALCMSLGLIWFTLADSTVAPNFNLTGVVLISLALCADAVIGNVQEKAMKLH-NASNS 287

Query:   124 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH-LYVYGVLVFEAMATFIGQVSVLSLI 182
             EM+  S  +G   ++  +  T  L  A   CS+  +  YG     ++  + G   VL+LI
Sbjct:   288 EMVLYSYSIGFVYILLGLTCTSGLGPAVTFCSKDPIRTYGYAFLFSLTGYFGISFVLALI 347

Query:   183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232
              +FGA     VTT RKA+T++LS++ F KP T Q+     L+ +GI L +
Sbjct:   348 KIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGFLVVLGIFLNV 397

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LDX3	UTR4_ARATH	No assigned EC number	0.8097	0.9815	0.7621	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026335001 SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (348 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
pfam08449	303	pfam08449, UAA, UAA transporter family	3e-70
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	2e-08
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.003

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score =  218 bits (557), Expect = 3e-70
 Identities = 90/241 (37%), Positives = 139/241 (57%), Gaps = 11/241 (4%)

Query: 2   MNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPA 61
             P KTYV + A    S  L   +L +++YP  ++FKS K++PVM++G  I    ++Y +
Sbjct: 61  KIPLKTYVLIVATFFLSSVLNNEALKYISYPTHVIFKSCKLIPVMILGILI--YGKRYSS 118

Query: 62  HEYVSALLLVVGLILFTLADAQTSPNFS------MIGVIMISGALIMDSFLGNLQEAIFT 115
            +Y+SALL+ +G+I+FTLA A+ S N         +G+ ++ GAL+MD+  GN QE ++ 
Sbjct: 119 LQYLSALLITLGVIIFTLASAKDSKNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYK 178

Query: 116 MNPETTQMEMLFCSTVVGLPMLIPPMLLTGE--LFKAWNSCSQHLYVYGVLVFEAMATFI 173
              + +  EM+F S ++ LP  +  +L      LF A + C +H  V   L+  ++  ++
Sbjct: 179 KYGKHS-KEMMFYSHLLSLPFFLLGLLDIRTGLLFSAESFCLRHPSVLFYLLLNSLTQYV 237

Query: 174 GQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 233
           GQ  V  LI+ FGA T  +VTT RK V+LLLS L+F  PLT Q   G LL+ +GI L   
Sbjct: 238 GQFFVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAY 297

Query: 234 P 234
            
Sbjct: 298 L 298

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 28/146 (19%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 92  GVIMISGALIMDSFLGNLQEAIFTMNPETTQ--MEMLFCSTVVGLPMLIPPMLLTGELFK 149
           G I+   A  + +    L + +      T    +E+L+  + V   +L+P +L +     
Sbjct: 1   GFILALAASALFALRLILSQKLLKKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKL 60

Query: 150 AWNSCS-----QHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLL 204
                      +      +L+   +  F+  +S   L+      T+++  T ++ V ++L
Sbjct: 61  GKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVL 120

Query: 205 SYLIFTKPLTEQHGTGLLLIAMGITL 230
           S +IF  P+T  +  GL +  +G+ L
Sbjct: 121 SVIIFGDPVTFLNILGLAIAILGVVL 146

This family includes transporters with a specificity for triose phosphate. Length = 149

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 33/189 (17%), Positives = 73/189 (38%), Gaps = 9/189 (4%)

Query: 42  VLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALI 101
           +LP+      +  L  +  +   +  +LL +  +L  L         S++G+++   A +
Sbjct: 105 LLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL 164

Query: 102 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY 161
           + +    L + +  + P T     L    ++ L +L+   L          +    LY+ 
Sbjct: 165 LWALYTALVKRLSRLGPVTL---ALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLG 221

Query: 162 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGL 221
                   +T +  +     + L GA+  A+++        LL  L+  +PL+     G 
Sbjct: 222 ------VFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGA 275

Query: 222 LLIAMGITL 230
            L+ +G+ L
Sbjct: 276 ALVVLGVLL 284

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	100.0
KOG1580	337	consensus UDP-galactose transporter related protei	100.0
KOG1582	367	consensus UDP-galactose transporter related protei	100.0
KOG1581	327	consensus UDP-galactose transporter related protei	100.0
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.96
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.96
PLN00411	358	nodulin MtN21 family protein; Provisional	99.95
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.93
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.93
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.92
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.91
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.91
PRK11689	295	aromatic amino acid exporter; Provisional	99.9
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.9
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.9
PRK11272	292	putative DMT superfamily transporter inner membran	99.89
PRK15430	296	putative chloramphenical resistance permease RarD;	99.88
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.88
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.85
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.84
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.82
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.81
KOG2765	416	consensus Predicted membrane protein [Function unk	99.8
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.76
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.72
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.71
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.7
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.68
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.66
KOG2766	336	consensus Predicted membrane protein [Function unk	99.6
COG2962	293	RarD Predicted permeases [General function predict	99.57
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.5
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.42
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.16
COG2510	140	Predicted membrane protein [Function unknown]	99.04
PRK15430	296	putative chloramphenical resistance permease RarD;	98.98
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.98
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.91
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.88
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.83
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.79
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.76
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.76
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.66
PLN00411	358	nodulin MtN21 family protein; Provisional	98.4
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.39
COG2962	293	RarD Predicted permeases [General function predict	98.37
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.34
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.32
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.21
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.15
PRK11272	292	putative DMT superfamily transporter inner membran	98.14
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.09
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.09
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.09
PRK11689	295	aromatic amino acid exporter; Provisional	98.08
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.04
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.94
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.89
PRK13499	345	rhamnose-proton symporter; Provisional	97.88
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.86
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.8
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.8
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.72
COG2510	140	Predicted membrane protein [Function unknown]	97.63
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.61
PRK13499	345	rhamnose-proton symporter; Provisional	97.59
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.58
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.44
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.43
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.42
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.37
COG2076	106	EmrE Membrane transporters of cations and cationic	97.36
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	97.35
COG2076	106	EmrE Membrane transporters of cations and cationic	97.35
PRK11431	105	multidrug efflux system protein; Provisional	97.3
PRK11431	105	multidrug efflux system protein; Provisional	97.28
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.26
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.23
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.13
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.72
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.63
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.25
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.23
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.16
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.11
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	96.02
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.74
KOG2765	416	consensus Predicted membrane protein [Function unk	95.25
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.16
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	94.42
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	93.8
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	93.42
KOG3912	372	consensus Predicted integral membrane protein [Gen	93.04
KOG1580	337	consensus UDP-galactose transporter related protei	92.56
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	92.33
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	92.23
KOG1581	327	consensus UDP-galactose transporter related protei	91.93
PF08507	136	COPI_assoc: COPI associated protein; InterPro: IPR	91.63
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.9
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	89.63
KOG2922	335	consensus Uncharacterized conserved protein [Funct	87.53
PF14851	153	FAM176: FAM176 family	86.63
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	86.19
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	84.93
PF03605	364	DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra	84.84
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	83.53
PF12794	340	MscS_TM: Mechanosensitive ion channel inner membra	81.97

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=100.00  E-value=2.3e-34  Score=255.81  Aligned_cols=235  Identities=34%  Similarity=0.587  Sum_probs=214.0

Q ss_pred             CCchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166            2 MNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus         2 ~~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      ..|+++|++.+++++++..++|.|++|+|+|+++++|+++|++|++++.++  +|||++++|+++++++++|++++..+|
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~--~~k~y~~~~~~~v~li~~Gv~~~~~~~  138 (303)
T PF08449_consen   61 KIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLI--LGKRYSRRQYLSVLLITIGVAIFTLSD  138 (303)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHh--cCccccHHHHHHHHHHHhhHheeeecc
Confidence            468999999999999999999999999999999999999999999999999  999999999999999999999998876


Q ss_pred             CCCCCC------chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhh--cccHHHHHHH
Q 024166           82 AQTSPN------FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLL--TGELFKAWNS  153 (271)
Q Consensus        82 ~~~~~~------~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  153 (271)
                      .+...+      ++..|++++++|.+++|+..++|||++++++. ++.++++|++++++++.++....  .++..+...+
T Consensus       139 ~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~-~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f  217 (303)
T PF08449_consen  139 SSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGK-SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRF  217 (303)
T ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Confidence            543211      22349999999999999999999999998764 57899999999999988777666  7787777777


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166          154 CSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       154 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      ...+|..+..+.+.++++++++...+.+++++||++.+++.++|+++++++|+++|||++++.+|+|+++++.|..+|.+
T Consensus       218 ~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  218 ISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence            78889888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCc
Q 024166          234 PADDKP  239 (271)
Q Consensus       234 ~k~~~~  239 (271)
                      .|+|++
T Consensus       298 ~~~k~~  303 (303)
T PF08449_consen  298 AKKKKN  303 (303)
T ss_pred             hhccCC
Confidence            887653

; GO: 0055085 transmembrane transport

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.9e-33  Score=227.76  Aligned_cols=229  Identities=29%  Similarity=0.475  Sum_probs=208.8

Q ss_pred             chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166            4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ   83 (271)
Q Consensus         4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~   83 (271)
                      |-+.|+..++-|.++...+|.|+||+|+|++.+.||++|++|++++.++  .|++.+++++.+++.+++|++++.+.+++
T Consensus        84 ~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~--~~KsY~w~kY~cVL~IV~GValFmYK~~K  161 (337)
T KOG1580|consen   84 PTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF--AHKSYHWRKYCCVLMIVVGVALFMYKENK  161 (337)
T ss_pred             cchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh--hcccccHHHHHHHHHHHHHHHHhhccccc
Confidence            5567999999999999999999999999999999999999999999999  89999999999999999999999887654


Q ss_pred             CC---CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHH
Q 024166           84 TS---PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYV  160 (271)
Q Consensus        84 ~~---~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (271)
                      ..   +...-.|-++.++|..++|+....|+++.+.+++ +..+||+|.|+++.+.+...++++||+++...+..+||..
T Consensus       162 v~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~  240 (337)
T KOG1580|consen  162 VGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYV  240 (337)
T ss_pred             cCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHH
Confidence            32   2345789999999999999999999998776643 4568999999999988888888999999988888999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          161 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       161 ~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      |..+.+.++++++|+.+.|..+...||.++|++++.++.++++.|+++|+++++.+||+|..+++.|...-....
T Consensus       241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G  315 (337)
T KOG1580|consen  241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG  315 (337)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence            888888889999999999999999999999999999999999999999999999999999999999988776543

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.1e-33  Score=231.84  Aligned_cols=265  Identities=46%  Similarity=0.773  Sum_probs=232.8

Q ss_pred             CCCchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166            1 MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA   80 (271)
Q Consensus         1 ~~~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~   80 (271)
                      +++|||.|..++++..+...++|-++.|+++|++.++|+|+.++|++.+.++  =++|.++.++.+..+..+|+.++...
T Consensus       102 r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifI--qGkRY~v~d~~aA~lm~lGli~FTLA  179 (367)
T KOG1582|consen  102 RVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFI--QGKRYGVHDYIAAMLMSLGLIWFTLA  179 (367)
T ss_pred             eecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeee--ccccccHHHHHHHHHHHHHHHhhhhc
Confidence            4799999999999999999999999999999999999999999999999999  57889999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchH-
Q 024166           81 DAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-  159 (271)
Q Consensus        81 ~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (271)
                      |++.++|++..|+.++-.|.+++|....+||+.+++++. +..++++|+..++.++++....++|+++..+.++.+||. 
T Consensus       180 Ds~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~-ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~  258 (367)
T KOG1582|consen  180 DSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPA-SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVR  258 (367)
T ss_pred             ccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC-CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHh
Confidence            999889999999999999999999999999999998864 458999999999999988888899999999999999996 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166          160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP  239 (271)
Q Consensus       160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~  239 (271)
                      .+.+.++.++.+.+|+.++...++..||..++.+++.|+..++++|+++|..|+|.+..-|..++..|+++..+.|+.|.
T Consensus       259 tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~  338 (367)
T KOG1582|consen  259 TYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKI  338 (367)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCC
Confidence            67778888889999999999999999999999999999999999999999999999999999999999999998874333


Q ss_pred             ccccccCCCccceeccccccchhhhhhhcCCC
Q 024166          240 IKRTATSSFKVNIRKLSFSEREEADEEKRAPV  271 (271)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (271)
                      ..+.  -.++.+.+.. ++-|-|+|+|++++|
T Consensus       339 ~~~~--~~~r~~~~~~-g~~~~~~~r~~~~~V  367 (367)
T KOG1582|consen  339 PLAS--LIRRIVARAA-GKVDRSVDRKDPMLV  367 (367)
T ss_pred             chhh--HHhhhhhhhc-cccccccccccccCC
Confidence            3221  1222221222 444555566666654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.2e-32  Score=230.28  Aligned_cols=233  Identities=28%  Similarity=0.466  Sum_probs=215.9

Q ss_pred             CCchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166            2 MNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus         2 ~~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      ..||++|..+|+.+.++.++.+.||+|+++|++++.||++.+||++++.++  .|+|++..++++.+++..|+.++...+
T Consensus        80 ~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lv--y~~ky~~~eYl~~~LIs~GvsiF~l~~  157 (327)
T KOG1581|consen   80 VAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLV--YGRKYSSFEYLVAFLISLGVSIFSLFP  157 (327)
T ss_pred             CCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHH--hcCccCcHHHHHHHHHHhheeeEEEec
Confidence            469999999999999999999999999999999999999999999999999  899999999999999999999998764


Q ss_pred             CCC----C-CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhh
Q 024166           82 AQT----S-PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ  156 (271)
Q Consensus        82 ~~~----~-~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (271)
                      .+.    . ..+...|+.++..+..++|+.+..|++++++. +.+++++|++.|++++++...+++..|.+.+...+...
T Consensus       158 ~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~  236 (327)
T KOG1581|consen  158 NSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKE  236 (327)
T ss_pred             CCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHc
Confidence            432    1 24789999999999999999999999999865 46789999999999999888887888888888899999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166          157 HLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       157 ~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                      ||+.+..+.+.+.|+++||.+.++.+++.|+.+.+++.+.|+++++.+|.+.||+++++.||.|..+++.|+++-...|.
T Consensus       237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~  316 (327)
T KOG1581|consen  237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKK  316 (327)
T ss_pred             ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877665


Q ss_pred             C
Q 024166          237 D  237 (271)
Q Consensus       237 ~  237 (271)
                      +
T Consensus       317 ~  317 (327)
T KOG1581|consen  317 K  317 (327)
T ss_pred             h
Confidence            5

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=2.3e-28  Score=217.19  Aligned_cols=227  Identities=17%  Similarity=0.175  Sum_probs=180.3

Q ss_pred             chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166            4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ   83 (271)
Q Consensus         4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~   83 (271)
                      .|+.++++|++++.+..++|.+++|+++++++++++++|++++++++++  +|||++++++++++++++|+++...++. 
T Consensus        64 ~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~--~~e~~~~~~~~~l~l~~~Gv~l~~~~~~-  140 (302)
T TIGR00817        64 LLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFF--LGQEFPSTLWLSLLPIVGGVALASDTEL-  140 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHhhhcCCcc-
Confidence            4667899999998899999999999999999999999999999999999  9999999999999999999987653332 


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHH-HHhh----hch
Q 024166           84 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAW-NSCS----QHL  158 (271)
Q Consensus        84 ~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~  158 (271)
                         +++..|++++++|+++++++.++.||..++ ++.++.++.+|++..+++.++|.....++..... ....    ..+
T Consensus       141 ---~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~  216 (302)
T TIGR00817       141 ---SFNWAGFLSAMISNITFVSRNIFSKKAMTI-KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNV  216 (302)
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCc
Confidence               345789999999999999999999987663 2345678888999888877777655433221111 0100    011


Q ss_pred             -HHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166          159 -YVYGVLVFEA-MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       159 -~~~~~l~l~~-~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                       ..+......+ .+....+..++.+++++||+++++.++++|++++++|++++||++|+.+++|.++++.|+++|++.|.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~  296 (302)
T TIGR00817       217 TKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA  296 (302)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence             1222122222 23334456778899999999999999999999999999999999999999999999999999997654


Q ss_pred             C
Q 024166          237 D  237 (271)
Q Consensus       237 ~  237 (271)
                      +
T Consensus       297 ~  297 (302)
T TIGR00817       297 Q  297 (302)
T ss_pred             c
Confidence            3

specificities overlap.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.96  E-value=1.1e-27  Score=212.95  Aligned_cols=231  Identities=17%  Similarity=0.222  Sum_probs=192.8

Q ss_pred             CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166            3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA   82 (271)
Q Consensus         3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~   82 (271)
                      .||++|+.++++.+.++++.+.|++|++++..+++++++.++++++++++  +|+|+++.|++|++++++|++++...|.
T Consensus        77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~f--L~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIF--LKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            58899999999999999999999999999999999999999999999999  9999999999999999999999888764


Q ss_pred             CC-----CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHh-hcccHHHHHHHhhh
Q 024166           83 QT-----SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPML-LTGELFKAWNSCSQ  156 (271)
Q Consensus        83 ~~-----~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  156 (271)
                      ..     .+++...|+++++.|+.+||++++++|+..++.   +..+.+....++++++..+... ++.+   .....++
T Consensus       155 ~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~~---~i~~~~w  228 (334)
T PF06027_consen  155 LSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILERS---GIESIHW  228 (334)
T ss_pred             cccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheehh---hhhccCC
Confidence            32     234679999999999999999999999988764   3566676777777776655433 3322   2222233


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166          157 HLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       157 ~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                      ++..+.++....++.++.+.+....++..||+..++.....++.++++++++||+++++..++|.++++.|..+|+..++
T Consensus       229 ~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  229 TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            44445555555677777788889999999999999999999999999999999999999999999999999999997665


Q ss_pred             CCccc
Q 024166          237 DKPIK  241 (271)
Q Consensus       237 ~~~~~  241 (271)
                      +..++
T Consensus       309 ~~~~~  313 (334)
T PF06027_consen  309 PEEEA  313 (334)
T ss_pred             ccccc
Confidence            44433

Some of the sequences in this family are annotated as putative membrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.96  E-value=9.9e-27  Score=210.53  Aligned_cols=225  Identities=15%  Similarity=0.191  Sum_probs=177.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC
Q 024166            5 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT   84 (271)
Q Consensus         5 ~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~   84 (271)
                      ||.+.++|+++.......+.|++++++++++++|++.|++++++++++  +|||++++++++++++++|+.+.+.++.  
T Consensus       114 ~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~--l~ek~s~~~~l~l~l~v~Gv~l~~~~~~--  189 (350)
T PTZ00343        114 LKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILF--LKQFLNLYAYLSLIPIVGGVALASVKEL--  189 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHheecccc--
Confidence            567899999998877788999999999999999999999999999999  9999999999999999999999876543  


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCC----CCChhhHHHHHHHhhHHHHHHHHh-hcccH-HHHHHHh-hh-
Q 024166           85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNP----ETTQMEMLFCSTVVGLPMLIPPML-LTGEL-FKAWNSC-SQ-  156 (271)
Q Consensus        85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~-  156 (271)
                        +.++.|++++++|++++++++++.|+.+++.+    +.++.+...++.+++.++++|... .++.- ...+... .. 
T Consensus       190 --~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~  267 (350)
T PTZ00343        190 --HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANM  267 (350)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc
Confidence              35688999999999999999999999887542    233444555667778777777644 32211 1111100 00 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166          157 HLYVYGVLVFEAMATFIGQVSVL----SLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL  232 (271)
Q Consensus       157 ~~~~~~~l~l~~~~~~~~~~~~~----~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~  232 (271)
                      ....+..+....+.+.+.+.+++    +++++++|.++++.+++||++++++|++++||++|+.+++|.++++.|+++|+
T Consensus       268 ~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        268 TNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            11111111222344456665555    69999999999999999999999999999999999999999999999999998


Q ss_pred             ccC
Q 024166          233 LPA  235 (271)
Q Consensus       233 ~~k  235 (271)
                      +.|
T Consensus       348 ~~k  350 (350)
T PTZ00343        348 LFK  350 (350)
T ss_pred             hcC
Confidence            764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.95  E-value=3.9e-26  Score=206.51  Aligned_cols=226  Identities=12%  Similarity=0.094  Sum_probs=167.9

Q ss_pred             hHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhccc------ccccChhhHHHHHHHHHHHHHHhcc
Q 024166            7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGL------RRKYPAHEYVSALLLVVGLILFTLA   80 (271)
Q Consensus         7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l------~e~~~~~~~l~~~l~~~Gv~v~~~~   80 (271)
                      .+..++++.+....+.+.+++|++.+.+.++.++.|++++++++++  +      |||.+++++++++++++|+.++..+
T Consensus        80 ~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~--~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         80 KIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIF--RMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH--HhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            3555555554455688999999999999999999999999999999  4      8999999999999999999987653


Q ss_pred             CCC---------------------CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHh-hHHHHH
Q 024166           81 DAQ---------------------TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVV-GLPMLI  138 (271)
Q Consensus        81 ~~~---------------------~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  138 (271)
                      +..                     ...+....|+++++.|+++|+++++++++..++++.  .....++...+ +.+...
T Consensus       158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~  235 (358)
T PLN00411        158 HGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSM  235 (358)
T ss_pred             cCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHH
Confidence            211                     001123669999999999999999999998777542  23334444433 333333


Q ss_pred             HHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhh
Q 024166          139 PPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHG  218 (271)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~  218 (271)
                      +....+++-...+. ...+...+..++.+ +++.+++.+|++++++.||..++++.++.|++++++|++++||++++.++
T Consensus       236 ~~l~~~~~~~~~~~-~~~~~~~~~i~y~~-i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~  313 (358)
T PLN00411        236 IGLVVEKNNPSVWI-IHFDITLITIVTMA-IITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCL  313 (358)
T ss_pred             HHHHHccCCcccce-eccchHHHHHHHHH-HHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHH
Confidence            33333321011110 11122333334433 44568999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccCCCC
Q 024166          219 TGLLLIAMGITLKLLPADDK  238 (271)
Q Consensus       219 ~G~~lvl~Gv~l~~~~k~~~  238 (271)
                      +|.++++.|+++..+.|+++
T Consensus       314 iG~~LIl~Gv~l~~~~~~~~  333 (358)
T PLN00411        314 IGGILITLGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHHHHHHHHHhhhhhh
Confidence            99999999999988654433

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.93  E-value=7.8e-27  Score=205.18  Aligned_cols=232  Identities=19%  Similarity=0.323  Sum_probs=196.2

Q ss_pred             CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166            3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA   82 (271)
Q Consensus         3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~   82 (271)
                      .+|++.+++|+.++++.++.|.|+.|+++++++++|+++|+++.++++++  .+|+.++..+++++++..|+.+.+.+|.
T Consensus        81 ~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~--~~~~~s~~~~lsL~piv~GV~ias~~e~  158 (316)
T KOG1441|consen   81 LPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLL--LGKTYSSMTYLSLLPIVFGVAIASVTEL  158 (316)
T ss_pred             cchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHH--hCCCCcceEEEEEEEeeeeEEEeeeccc
Confidence            47899999999999999999999999999999999999999999999999  8999999999999999999999998775


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhh-CCCCChhhHHHHHHHhhHHHHH-HHHh-hcccHHHHHHHhhhchH
Q 024166           83 QTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTM-NPETTQMEMLFCSTVVGLPMLI-PPML-LTGELFKAWNSCSQHLY  159 (271)
Q Consensus        83 ~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~  159 (271)
                          ++++.|.+.++++.+..++++++.++++++ ..+.++++++.|.+.++..+++ |... .+++....+. ...+..
T Consensus       159 ----~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~-~~~~~~  233 (316)
T KOG1441|consen  159 ----SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFL-TAPWFV  233 (316)
T ss_pred             ----cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeee-ccccch
Confidence                478999999999999999999999999964 3455788999999998888777 6433 2332210000 001111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166          160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP  239 (271)
Q Consensus       160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~  239 (271)
                      ....+.++.++.+.-+...|.++++++|++.++.++.|.++.+..|+++|++++|+.+..|.++.+.|+++|++.|.+++
T Consensus       234 ~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~  313 (316)
T KOG1441|consen  234 TFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK  313 (316)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            11223334488788889999999999999999999999999999999999999999999999999999999999887776


Q ss_pred             cc
Q 024166          240 IK  241 (271)
Q Consensus       240 ~~  241 (271)
                      ++
T Consensus       314 ~~  315 (316)
T KOG1441|consen  314 KG  315 (316)
T ss_pred             cc
Confidence            54

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.93  E-value=4.6e-23  Score=182.96  Aligned_cols=230  Identities=13%  Similarity=0.241  Sum_probs=170.4

Q ss_pred             chhhHHHHHHHHH-HHHHhhhHhhcC-cchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166            4 PWKTYVKLSAVLM-GSHGLTKGSLAF-LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus         4 ~~~~~~~~~~l~~-~~~~l~~~al~~-~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      +++.....+++.. ....+.+.+++| ++.+.+.++.++.|+++.++++++  +|||++++++++++++++|+.++..++
T Consensus        57 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~--l~e~~~~~~~~~~~l~~~Gv~ll~~~~  134 (299)
T PRK11453         57 PLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFT--FGERLQGKQLAGIALAIFGVLVLIEDS  134 (299)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHhHHHhcccc
Confidence            3444555555443 344566788888 688899999999999999999999  999999999999999999999887543


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHH-HHHHHHhhcccHHHHHHHhhhchH-
Q 024166           82 AQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLP-MLIPPMLLTGELFKAWNSCSQHLY-  159 (271)
Q Consensus        82 ~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-  159 (271)
                      .+ ..+.++.|+++++.++++++.+.+++|+..++.+........++....+.. +.......+++..........++. 
T Consensus       135 ~~-~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (299)
T PRK11453        135 LN-GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTT  213 (299)
T ss_pred             CC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHH
Confidence            22 123356799999999999999999999875544322223333444444322 222212223321100111112333 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166          160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                      ++..+++..+++++++.+|++++++.+|.+++++..++|+++.+++++++||++++.+++|.++++.|+++..+.++
T Consensus       214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            34566777899999999999999999999999999999999999999999999999999999999999998887664

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.8e-25  Score=187.04  Aligned_cols=232  Identities=24%  Similarity=0.430  Sum_probs=198.2

Q ss_pred             CCchhhHHHHHHHHHHHHHhhhHhhcC-cchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166            2 MNPWKTYVKLSAVLMGSHGLTKGSLAF-LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA   80 (271)
Q Consensus         2 ~~~~~~~~~~~~l~~~~~~l~~~al~~-~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~   80 (271)
                      ++|.|.|+.....++..+.++|+++++ ++.|...++||-+++.++++++++  .|+|.+.+|+.+++.+.+|+.+.+..
T Consensus        61 kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il--~~k~Ys~~Qy~Sv~~iTiGiiIcTl~  138 (330)
T KOG1583|consen   61 KIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWIL--LGKRYSLRQYSSVLMITIGIIICTLF  138 (330)
T ss_pred             CCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHh--ccceeehhhhhhHHhhhhhheeEEee
Confidence            579999999999999999999999999 999999999999999999999999  89999999999999999999988764


Q ss_pred             CCCC---------CC------CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcc
Q 024166           81 DAQT---------SP------NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG  145 (271)
Q Consensus        81 ~~~~---------~~------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (271)
                      ..+.         .+      ..+..|+.+..++.+..+...++||+.++|++++ +-+.+||+...++|.++   ++.+
T Consensus       139 s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh-~~EalFytH~LsLP~Fl---f~~~  214 (330)
T KOG1583|consen  139 SSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH-WKEALFYTHFLSLPLFL---FMGD  214 (330)
T ss_pred             cCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhccchHH---Hhcc
Confidence            3211         00      1357899999999999999999999999999875 67899999999988764   4555


Q ss_pred             cHHHHHHHhhhc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 024166          146 ELFKAWNSCSQH------------LYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPL  213 (271)
Q Consensus       146 ~~~~~~~~~~~~------------~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~  213 (271)
                      |+.+.+.....+            |..|.++..+++.+.+..--++....++++++++++-++|+.++.++|.+.|.+++
T Consensus       215 div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npf  294 (330)
T KOG1583|consen  215 DIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPF  294 (330)
T ss_pred             hHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCC
Confidence            666555443332            45577777777777777777788889999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166          214 TEQHGTGLLLIAMGITLKLLPADDKP  239 (271)
Q Consensus       214 s~~~~~G~~lvl~Gv~l~~~~k~~~~  239 (271)
                      |+.+|+|..+|+.|-.+|.....+++
T Consensus       295 t~~h~lGa~lVF~Gt~~fa~~~~~~~  320 (330)
T KOG1583|consen  295 TPWHWLGAALVFFGTLLFANVWNHPK  320 (330)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            99999999999999999976655444

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.91  E-value=2.2e-22  Score=174.59  Aligned_cols=213  Identities=15%  Similarity=0.113  Sum_probs=170.5

Q ss_pred             chhhHHHHHHHH-HHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166            4 PWKTYVKLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA   82 (271)
Q Consensus         4 ~~~~~~~~~~l~-~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~   82 (271)
                      +++.+...+.+. .++..+.+.|++|++.+...++.++.|+++++++.++  +|||++++++.+++++++|+.++..++.
T Consensus        45 ~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~--~~e~~~~~~~~gi~i~~~Gv~li~~~~~  122 (260)
T TIGR00950        45 RLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLM--GKERPRKLVLLAAVLGLAGAVLLLSDGN  122 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHhHHhhccCCc
Confidence            345566666654 5678899999999999999999999999999999999  9999999999999999999998865432


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-
Q 024166           83 QTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-  161 (271)
Q Consensus        83 ~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  161 (271)
                         .+.+..|+++.+.++++++.+.++.|+..++.+. ++.....+...++.+++.+.....++..      ..++..| 
T Consensus       123 ---~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~  192 (260)
T TIGR00950       123 ---LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAWFLGPNP------QALSLQWG  192 (260)
T ss_pred             ---ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCCC------CcchHHHH
Confidence               2346789999999999999999999887654321 2233333556666666665544433211      0122233 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHH
Q 024166          162 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGI  228 (271)
Q Consensus       162 ~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv  228 (271)
                      ..+++..+++.+++.++++++++.++.+++++..++|+++.+++++++||++++.+++|..+++.|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       193 ALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            4556666778899999999999999999999999999999999999999999999999999999986

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.91  E-value=1e-23  Score=180.11  Aligned_cols=227  Identities=20%  Similarity=0.304  Sum_probs=182.7

Q ss_pred             CCchhhHH----HHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHH
Q 024166            2 MNPWKTYV----KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF   77 (271)
Q Consensus         2 ~~~~~~~~----~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~   77 (271)
                      +..|++|+    +.+++..+.+.++|++++|++++.|++.||++++|+.+++..++  -||+++.-.+.++++.+|++++
T Consensus        77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~--lEk~~w~L~l~v~lI~~Glflf  154 (349)
T KOG1443|consen   77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFK--LEKFRWALVLIVLLIAVGLFLF  154 (349)
T ss_pred             CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHH--hHHHHHHHHHHHHHHhhheeEE
Confidence            34677666    99999999999999999999999999999999999999999993  5999999999999999999999


Q ss_pred             hccCCCCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCC--CCChhhHHHHHHHhhHHHHHHH-HhhcccHHHHH--H
Q 024166           78 TLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNP--ETTQMEMLFCSTVVGLPMLIPP-MLLTGELFKAW--N  152 (271)
Q Consensus        78 ~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~  152 (271)
                      ++.+.    +++..|..+++.|+++.|+++++.++++++++  +.+|..++++.+.+....++|. +.++|......  .
T Consensus       155 t~KsT----qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~  230 (349)
T KOG1443|consen  155 TYKST----QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSI  230 (349)
T ss_pred             Eeccc----ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhH
Confidence            88653    47899999999999999999999999998875  3467888888777665555543 45666532211  1


Q ss_pred             Hhhhch-HHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHH
Q 024166          153 SCSQHL-YVYGV---LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGI  228 (271)
Q Consensus       153 ~~~~~~-~~~~~---l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv  228 (271)
                      +....+ ..+..   +.+.+..+++-..+-+....+++..+.++++..|.+.+.+++..+.+|++|..+|+|..+++.|+
T Consensus       231 f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi  310 (349)
T KOG1443|consen  231 FRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGI  310 (349)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHH
Confidence            111122 33433   33333333333455688899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcc
Q 024166          229 TLKLLP  234 (271)
Q Consensus       229 ~l~~~~  234 (271)
                      .++...
T Consensus       311 ~~~~~~  316 (349)
T KOG1443|consen  311 LLHRNE  316 (349)
T ss_pred             HHhccC
Confidence            999443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.90  E-value=4.9e-22  Score=176.07  Aligned_cols=215  Identities=13%  Similarity=0.038  Sum_probs=158.3

Q ss_pred             HHHHHHH-HHHHHHhhhHhhcC----cchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166            8 YVKLSAV-LMGSHGLTKGSLAF----LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA   82 (271)
Q Consensus         8 ~~~~~~l-~~~~~~l~~~al~~----~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~   82 (271)
                      ....+.+ +++...+.+.+++|    ++.....++.++.|++++++++++  +|||++++++++++++++|++++..++.
T Consensus        63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~--~~e~~~~~~~~g~~l~~~Gv~li~~~~~  140 (295)
T PRK11689         63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLF--NGQKANWLLIPGLLLALAGVAWVLGGDN  140 (295)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHH--hcCCccHHHHHHHHHHHHhHhheecCCc
Confidence            3444444 34556666777654    566777889999999999999999  8999999999999999999998875543


Q ss_pred             CCC-------CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhh
Q 024166           83 QTS-------PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS  155 (271)
Q Consensus        83 ~~~-------~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (271)
                      ...       ...+..|+++++.++++++.+.++.||..++.   ++....+   ..+...+.+.....++. .    ..
T Consensus       141 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~---~~~~~~~---~~~~~~l~~~~~~~~~~-~----~~  209 (295)
T PRK11689        141 GLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK---NGITLFF---ILTALALWIKYFLSPQP-A----MV  209 (295)
T ss_pred             cchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC---CchhHHH---HHHHHHHHHHHHHhcCc-c----cc
Confidence            110       01245799999999999999999998864433   2333221   11222222221222221 0    11


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          156 QHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       156 ~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      .+++.|..+...++++.+++.+|++++++.+|.++++..+++|+++++++++++||++++.+++|.++++.|+++..+..
T Consensus       210 ~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        210 FSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            23344544445557889999999999999999999999999999999999999999999999999999999998876543

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.3e-25  Score=188.90  Aligned_cols=242  Identities=15%  Similarity=0.140  Sum_probs=210.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC
Q 024166            5 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT   84 (271)
Q Consensus         5 ~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~   84 (271)
                      .|+..++++.+.+++..+|+.|+|+++++|.+.|+.+.+|++++++++  +|+|-+.....++++++.|-.+=+-.++. 
T Consensus       102 ~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvl--lkqkTs~~~~~~C~lIi~GF~lGvdqE~~-  178 (347)
T KOG1442|consen  102 ARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVL--LKQKTSFFALGCCLLIILGFGLGVDQEGS-  178 (347)
T ss_pred             HHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhh--cccccccccceeehhheehheeccccccc-
Confidence            467889999999999999999999999999999999999999999999  99999999999999999998765433322 


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhh-chHHHHH
Q 024166           85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ-HLYVYGV  163 (271)
Q Consensus        85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  163 (271)
                      .+...+.|.++.+.|+++-++..++.||......+ ..+.+.+|+|+.++++++|.++++||+.+.+.+.+. ..+.|..
T Consensus       179 ~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~  257 (347)
T KOG1442|consen  179 TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWIL  257 (347)
T ss_pred             cCccchhhhHHHHHHHHHHHHHHHhhheecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHH
Confidence            23468999999999999999999998876554332 357888999999999999999999998877765444 2356788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCccccc
Q 024166          164 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRT  243 (271)
Q Consensus       164 l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~~~  243 (271)
                      +.+++++++.-.....+-+|.+||.+.++.++.|.+..++++..+++|..+...|.|.++++.|...|.+.|+++++|++
T Consensus       258 mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~  337 (347)
T KOG1442|consen  258 MTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS  337 (347)
T ss_pred             HHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence            88888888877777888899999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ccCCCcc
Q 024166          244 ATSSFKV  250 (271)
Q Consensus       244 ~~~~~~~  250 (271)
                      ++++++.
T Consensus       338 ~~~s~~~  344 (347)
T KOG1442|consen  338 AQRSPAT  344 (347)
T ss_pred             cCCCccc
Confidence            7776654

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.4e-22  Score=173.61  Aligned_cols=232  Identities=19%  Similarity=0.221  Sum_probs=197.0

Q ss_pred             chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166            4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ   83 (271)
Q Consensus         4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~   83 (271)
                      ..|+++|++++++++...+..+++|+++++++++|..+|+.+++....+  +|+++++..|.++..+.+|......+|.+
T Consensus        76 ~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf--~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s  153 (314)
T KOG1444|consen   76 TAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLF--FGKRPSNKVWASVFAMIIGSVAAAFTDLS  153 (314)
T ss_pred             HHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhh--cCcCchhhHHHHHHHHHHHHHhhccccce
Confidence            3578999999999999999999999999999999999999999999999  89999999999999999999998887753


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHh---hhchHH
Q 024166           84 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSC---SQHLYV  160 (271)
Q Consensus        84 ~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  160 (271)
                          .+..|+.+++.+++..+.+.++.|+..+.. +...+++++|.+++++|.+....+.+||+. .....   ...+..
T Consensus       154 ----f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~  227 (314)
T KOG1444|consen  154 ----FNLRGYSWALANCLTTAAFVVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSV  227 (314)
T ss_pred             ----ecchhHHHHHHHHHHHHHHHHHHHHhhccc-cccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhH
Confidence                456799999999999999999988766543 335688999999999998877777888865 22211   112346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCcc
Q 024166          161 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI  240 (271)
Q Consensus       161 ~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~  240 (271)
                      +..+.++|++++.-.++.+.|.+..||++.++++......+.+...+++|+++++.+.+|+.+-+.|-.+|.+.+.++++
T Consensus       228 ~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~  307 (314)
T KOG1444|consen  228 LVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK  307 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence            77888999999888899999999999999999996566666666666666799999999999999999999998877766


Q ss_pred             ccc
Q 024166          241 KRT  243 (271)
Q Consensus       241 ~~~  243 (271)
                      .++
T Consensus       308 ~~~  310 (314)
T KOG1444|consen  308 QPP  310 (314)
T ss_pred             CCC
Confidence            654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.89  E-value=2.4e-21  Score=171.42  Aligned_cols=217  Identities=14%  Similarity=0.086  Sum_probs=166.8

Q ss_pred             hhHHHHHHHH-HHHHHhhhHhh-cCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166            6 KTYVKLSAVL-MGSHGLTKGSL-AFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ   83 (271)
Q Consensus         6 ~~~~~~~~l~-~~~~~l~~~al-~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~   83 (271)
                      +.....+.+. .....+.+.+. ++++.+..+++.++.|+++++++. +  +|||+++++++++.++++|+.++..++..
T Consensus        69 ~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~-~--~~e~~~~~~~~~~~la~~Gv~ll~~~~~~  145 (292)
T PRK11272         69 LNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSR-L--FGIRTRKLEWLGIAIGLAGIVLLNSGGNL  145 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH-H--hcccCchhHHHHHHHHHHhHHHHhcCccc
Confidence            3445556654 34567778888 999999999999999999999997 5  58999999999999999999988654221


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-H
Q 024166           84 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-G  162 (271)
Q Consensus        84 ~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  162 (271)
                         +....|+++.+.++++++.+.+..||..++    ++.....+....+.+.+.+.....++..+    ...++..| .
T Consensus       146 ---~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  214 (292)
T PRK11272        146 ---SGNPWGAILILIASASWAFGSVWSSRLPLP----VGMMAGAAEMLAAGVVLLIASLLSGERLT----ALPTLSGFLA  214 (292)
T ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHHHHHHHHcCCccc----ccCCHHHHHH
Confidence               235679999999999999999998774322    12334455555555554443333322110    01122333 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166          163 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       163 ~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                      .++++.+++.+++.+|++++++.++...++...++|+++.+++++++||++|+.+++|.++++.|+++..+.++
T Consensus       215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            56666678899999999999999999999999999999999999999999999999999999999998876544

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.88  E-value=6.1e-21  Score=169.12  Aligned_cols=208  Identities=13%  Similarity=0.150  Sum_probs=153.3

Q ss_pred             HHH-HHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCCCch
Q 024166           11 LSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFS   89 (271)
Q Consensus        11 ~~~-l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~~~~   89 (271)
                      .+. +...+..+.++|+++++++...++.++.|++++++++++  +|||+++++|++++++++|++++..+++    +..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~--l~E~~~~~~~~g~~l~~~Gv~li~~~~~----~~~  151 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIF--LGERFRRMQWLAVILAICGVLVQLWTFG----SLP  151 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHcC----Ccc
Confidence            443 345678899999999999999999999999999999999  9999999999999999999998864322    111


Q ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchH-HHHHHHHHH
Q 024166           90 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEA  168 (271)
Q Consensus        90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~  168 (271)
                          .+.+.++++|+.+.+++|+..+ +..........+...++.+...+  ...... .   .....+. .+..++..+
T Consensus       152 ----~~~l~aa~~~a~~~i~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~---~~~~~~~~~~~~~~~~g  220 (296)
T PRK15430        152 ----IIALGLAFSFAFYGLVRKKIAV-EAQTGMLIETMWLLPVAAIYLFA--IADSST-S---HMGQNPMSLNLLLIAAG  220 (296)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHHHHHHHH--HccCCc-c---cccCCcHHHHHHHHHHH
Confidence                4577788999999988876432 11111122222333333222111  111110 0   0011222 234455555


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      +++.+++.++++++++.+|..++++.+++|+++++++++++||++++.+++|.++++.|+.+.....
T Consensus       221 ~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        221 IVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6778999999999999999999999999999999999999999999999999999988888776543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.88  E-value=3.6e-20  Score=164.00  Aligned_cols=216  Identities=13%  Similarity=0.079  Sum_probs=161.3

Q ss_pred             hhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC
Q 024166            5 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT   84 (271)
Q Consensus         5 ~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~   84 (271)
                      |+.....++++.....+.+++++|++.+.++++..+.|+++++++      +|+..+  ...+.++++|+.++...+.+ 
T Consensus        71 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~------~~~~~~--~~~~~i~~~Gv~li~~~~~~-  141 (293)
T PRK10532         71 RLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS------SRRPVD--FVWVVLAVLGLWFLLPLGQD-  141 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh------cCChHH--HHHHHHHHHHHheeeecCCC-
Confidence            345667777777778889999999999999999999999987654      244443  44567789999877633222 


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-HH
Q 024166           85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-GV  163 (271)
Q Consensus        85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  163 (271)
                      .++.+..|+++.+.++++++.+.++.|+..+++   ++... .+...++...+.|.....+.  +    ...++..| ..
T Consensus       142 ~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~--~----~~~~~~~~~~~  211 (293)
T PRK10532        142 VSHVDLTGAALALGAGACWAIYILSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAG--E----ALWHWSILPLG  211 (293)
T ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccC--c----ccCCHHHHHHH
Confidence            123456899999999999999999998875543   23333 34445555444443333221  0    01122333 34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166          164 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP  239 (271)
Q Consensus       164 l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~  239 (271)
                      ++++.+++++++.++++++++.+|.+++++..++|+++.+++++++||++++.+++|.++++.|+..+.+..++++
T Consensus       212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~  287 (293)
T PRK10532        212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP  287 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            5677788999999999999999999999999999999999999999999999999999999999999986654443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.85  E-value=8.9e-20  Score=160.52  Aligned_cols=213  Identities=12%  Similarity=0.075  Sum_probs=157.4

Q ss_pred             HHHHHH-HHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCC
Q 024166            8 YVKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSP   86 (271)
Q Consensus         8 ~~~~~~-l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~   86 (271)
                      ....+. .......+.+.|+++.+.+...++.++.|++++++++++  +|||+++++|++++++++|+.++...+..   
T Consensus        65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~--~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~---  139 (281)
T TIGR03340        65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT--LGETLSPLAWLGILIITLGLLVLGLSRFA---  139 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccccc---
Confidence            333344 346678899999999999999999999999999999999  99999999999999999999988754322   


Q ss_pred             CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCC-ChhhHHHHHHHhh-HHHHHHHHhhcccHHHHHHHhhhchHHHHHH
Q 024166           87 NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET-TQMEMLFCSTVVG-LPMLIPPMLLTGELFKAWNSCSQHLYVYGVL  164 (271)
Q Consensus        87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  164 (271)
                      +.+..|+.+.+.++++++.+.++.|+..++.+.. +......+..... .++..+. ...++.  ..  .......+..+
T Consensus       140 ~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~--~~~~~~~~~~~  214 (281)
T TIGR03340       140 QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLY-LKRHGR--SM--FPYARQILPSA  214 (281)
T ss_pred             ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHH-HHHhcc--ch--hhhHHHHHHHH
Confidence            2345788899999999999998776543222111 1111112222211 2221111 111110  00  00112334556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHH
Q 024166          165 VFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITL  230 (271)
Q Consensus       165 ~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l  230 (271)
                      +...+++.+++.+|++++++.++..++....+.|+++.+++++++||+++..+++|.++++.|+.+
T Consensus       215 ~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       215 TLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            777788899999999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.84  E-value=4.1e-19  Score=152.73  Aligned_cols=212  Identities=17%  Similarity=0.259  Sum_probs=166.6

Q ss_pred             hhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCC
Q 024166            6 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS   85 (271)
Q Consensus         6 ~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~   85 (271)
                      .++++.+++|.+.+.+.+.++++++.+++++++.++.++|+++++++  +|||.+++||+++++.++|+.++..++....
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~--L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~   95 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL--LKRRLSRRQWLALFLLVAGVVLVQLSSSQSS   95 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH--HHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence            36788899999999999999999999999999999999999999999  9999999999999999999999887654320


Q ss_pred             -------------CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcc-cHHHHH
Q 024166           86 -------------PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG-ELFKAW  151 (271)
Q Consensus        86 -------------~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  151 (271)
                                   ..+...|+++++.++++.|+.+++.||++|+.+ .+.+........+++++.++.....+ +.....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~  174 (244)
T PF04142_consen   96 DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSDGSAISES  174 (244)
T ss_pred             ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence                         123589999999999999999999999999864 33444444555566665544433221 110001


Q ss_pred             HHhhh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHH
Q 024166          152 NSCSQ-HLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI  224 (271)
Q Consensus       152 ~~~~~-~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lv  224 (271)
                      .+++. ++..|.    ..+..+++.+.....+|+.+...-+....+..+++.++++++||.++|....+|..+|
T Consensus       175 g~f~G~~~~~~~----~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  175 GFFHGYSWWVWI----VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             CchhhcchHHHH----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            11111 222222    2355677888888999999999999999999999999999999999999999998754

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.82  E-value=3.2e-18  Score=150.16  Aligned_cols=223  Identities=18%  Similarity=0.188  Sum_probs=174.4

Q ss_pred             hhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC-
Q 024166            6 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT-   84 (271)
Q Consensus         6 ~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~-   84 (271)
                      .+..+.+++|.+.+-+.+.++.|++.+++++....+.+.|++++.++  +|||.+++||.++++.++|+.+...+..+. 
T Consensus        93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~--L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~  170 (345)
T KOG2234|consen   93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLI--LRRKLSRLQWMALVLLFAGVALVQLPSLSPT  170 (345)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            46777888999988899999999999999999999999999999999  999999999999999999999998432211 


Q ss_pred             ------CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHH--HHHhhh
Q 024166           85 ------SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKA--WNSCSQ  156 (271)
Q Consensus        85 ------~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  156 (271)
                            ...+.+.|....+.+++.+|+.+++.||++|+.+ .+.+-.......++.++.+...+.. |....  ..+++.
T Consensus       171 ~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~-~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G  248 (345)
T KOG2234|consen  171 GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN-VSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYG  248 (345)
T ss_pred             CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcccc
Confidence                  1246799999999999999999999999998754 3333333344455555555443333 21111  112233


Q ss_pred             chH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          157 HLY-VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       157 ~~~-~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      +.. .|..+    +..+++.++....+|+.+...-.....+..+++.+.|+.+||.++|....+|..+|+.++.+|...+
T Consensus       249 ~s~~vw~vV----l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P  324 (345)
T KOG2234|consen  249 YSSIVWLVV----LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP  324 (345)
T ss_pred             ccHHHHHHH----HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence            332 34333    3345667778888999999999999999999999999999999999999999999999999999443


Q ss_pred             C
Q 024166          236 D  236 (271)
Q Consensus       236 ~  236 (271)
                      +
T Consensus       325 ~  325 (345)
T KOG2234|consen  325 A  325 (345)
T ss_pred             c
Confidence            3

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.81  E-value=1.3e-17  Score=146.03  Aligned_cols=214  Identities=15%  Similarity=0.194  Sum_probs=161.7

Q ss_pred             hHHHHHHHH-HHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHH-hhcccccccChhhHHHHHHHHHHHHHHhccCCCC
Q 024166            7 TYVKLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGA-FIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT   84 (271)
Q Consensus         7 ~~~~~~~l~-~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~-ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~   84 (271)
                      .....+.+. .....+.+.+++|++.+..+++.++.|+++.++++ ++  +|||++++++.++.+.++|+.++...+...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLL--LGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            344444444 55678899999999999999999999999999997 66  799999999999999999999998766532


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHH-HHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-H
Q 024166           85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF-CSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-G  162 (271)
Q Consensus        85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  162 (271)
                      ... ...|+.+.+.++++++++.+++|+.. +.   ++..... +... ............ +. +    .......| .
T Consensus       149 ~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~----~~~~~~~~~~  216 (292)
T COG0697         149 GIL-SLLGLLLALAAALLWALYTALVKRLS-RL---GPVTLALLLQLL-LALLLLLLFFLS-GF-G----APILSRAWLL  216 (292)
T ss_pred             hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC---ChHHHHHHHHHH-HHHHHHHHHHhc-cc-c----ccCCHHHHHH
Confidence            211 47999999999999999999998776 32   2333333 2222 111111100111 00 0    01122223 3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166          163 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       163 ~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~  234 (271)
                      ....+.+++.+++.++++.+++.++...++...++|+.+++++++++||+++..+++|..+++.|+.+....
T Consensus       217 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            444555666689999999999999999999999999999999999999999999999999999999988866

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.80  E-value=4.1e-19  Score=155.82  Aligned_cols=224  Identities=12%  Similarity=0.203  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC----
Q 024166            9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT----   84 (271)
Q Consensus         9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~----   84 (271)
                      +.++.+.+.++...|.||+|++++..+++.|++-+||+.++.++  ..||++..|.+++++.+.|+++++.+|...    
T Consensus       163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if--~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~  240 (416)
T KOG2765|consen  163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIF--PVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDL  240 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHc--CcchhhHHHHHHHHHhhccEEEEEeccccccccC
Confidence            34455668899999999999999999999999999999999999  689999999999999999999999886532    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCC-CCChhhHHH-HHHHhhHHHHHHHHhhcccH-HHHHHHhhhchHHH
Q 024166           85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNP-ETTQMEMLF-CSTVVGLPMLIPPMLLTGEL-FKAWNSCSQHLYVY  161 (271)
Q Consensus        85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  161 (271)
                      .+.....|.+++++++..||.|.++.||-..+++ +.+ +++.| |..++.++++.|.+++..-+ .+.+. .....+..
T Consensus       241 ~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvd-i~lffGfvGLfnllllwP~l~iL~~~~~e~F~-lP~~~q~~  318 (416)
T KOG2765|consen  241 PASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVD-IQLFFGFVGLFNLLLLWPPLIILDFFGEERFE-LPSSTQFS  318 (416)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-HHHHHHHHHHHHHHHHhHHHHHHHHhccCccc-CCCCceeE
Confidence            2345699999999999999999999887666553 333 45544 78888888887764432111 01111 01122233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166          162 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       162 ~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                      ..++.+++.+++.-.+|.+++-.++|+.+.+...+...++++...++-|.++|+.+.+|.+.|+.|.+..++..+
T Consensus       319 ~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  319 LVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             eeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            345667788899999999999999999999999999999999999999999999999999999999988876543

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.76  E-value=2.9e-18  Score=140.80  Aligned_cols=234  Identities=15%  Similarity=0.169  Sum_probs=187.5

Q ss_pred             chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166            4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ   83 (271)
Q Consensus         4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~   83 (271)
                      ..|.+++++++-...+..+.-+|||+++|.|+++|..+.+.++....++  ||.|.+.....+-.++++-..+..++|.+
T Consensus        67 ~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~--Fgg~vtsl~l~SFilMvlSS~va~w~D~q  144 (309)
T COG5070          67 KAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLF--FGGRVTSLELLSFILMVLSSVVATWGDQQ  144 (309)
T ss_pred             hhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHH--hcCccchhhHHHHHHHHHHHHHhccchhh
Confidence            3578999999999999999999999999999999999999999999999  99999999999999999999999998874


Q ss_pred             CC---CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhh-hchH
Q 024166           84 TS---PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS-QHLY  159 (271)
Q Consensus        84 ~~---~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  159 (271)
                      ..   ...--.|++|+...++..+.+-...++..+-. +-..++.+||.|+.+.|+++...++.+|..+ -+... .++.
T Consensus       145 ~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~lt-Nf~d~dtmfYnNllslPiL~~~s~~~edws~-~n~annl~~d  222 (309)
T COG5070         145 ASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT-NFKDFDTMFYNNLLSLPILLSFSFLFEDWSP-GNLANNLSVD  222 (309)
T ss_pred             HHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccc-ccchhhHHHHhhhHHHHHHHHHHHHhccCCc-chhhcCCChH
Confidence            32   11224699999998888777655444433321 1124788999999999988766555554211 11111 1334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166          160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP  239 (271)
Q Consensus       160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~  239 (271)
                      ....+++.++|++.-..+..++++.++.++.++++.+.+....+.|.++||++.+......+.+-..+-.+|...|.+++
T Consensus       223 ~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~  302 (309)
T COG5070         223 SLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ  302 (309)
T ss_pred             HHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567788888766678889999999999999999999999999999999999999999999998887788888776655


Q ss_pred             cc
Q 024166          240 IK  241 (271)
Q Consensus       240 ~~  241 (271)
                      ++
T Consensus       303 q~  304 (309)
T COG5070         303 QN  304 (309)
T ss_pred             hc
Confidence            44

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.72  E-value=4.1e-16  Score=124.68  Aligned_cols=142  Identities=17%  Similarity=0.313  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHhhC----CCCChhhHHHHHHHhhHHHHHHHHhhcccHH--HHHHHhhh-----chHH
Q 024166           92 GVIMISGALIMDSFLGNLQEAIFTMN----PETTQMEMLFCSTVVGLPMLIPPMLLTGELF--KAWNSCSQ-----HLYV  160 (271)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~  160 (271)
                      |+++++.|.++.+++++++|+.+++.    ++.++.++++|.+..++++++|..++.++..  +.......     .+..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            78899999999999999999999884    4567899999999999888887765544322  11111111     2345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166          161 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       161 ~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      +..+...++..++.+...+.+++++||++.++.+.+|.+.++++|+++|||++|+.+++|+++.+.|+++|++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            5667777788888889999999999999999999999999999999999999999999999999999999975

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00688 rarD rarD protein

Probab=99.71  E-value=9.5e-16  Score=133.04  Aligned_cols=182  Identities=9%  Similarity=0.044  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCCC
Q 024166            8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPN   87 (271)
Q Consensus         8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~~   87 (271)
                      ....+++..++..+.++|++|++++.++++.++.|++++++++++  +|||++++++++++++++|++++..++.    +
T Consensus        73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~--l~Ek~~~~~~l~~~~~~~Gv~li~~~~~----~  146 (256)
T TIGR00688        73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVF--LKERISRFQFIAVIIATLGVISNIVLKG----S  146 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHcC----C
Confidence            344455667788899999999999999999999999999999999  9999999999999999999998764321    1


Q ss_pred             chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhch-HHHHHHHH
Q 024166           88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL-YVYGVLVF  166 (271)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l  166 (271)
                      ..    .+.+.++++++.+.+..|+..++    +..+...+ .....+...+.....+. .+ .  ...++ ..|..++.
T Consensus       147 ~~----~~~l~aa~~~a~~~i~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~l~~  213 (256)
T TIGR00688       147 LP----WEALVLAFSFTAYGLIRKALKNT----DLAGFCLE-TLSLMPVAIYYLLQTDF-AT-V--QQTNPFPIWLLLVL  213 (256)
T ss_pred             ch----HHHHHHHHHHHHHHHHHhhcCCC----CcchHHHH-HHHHHHHHHHHHHHhcc-Cc-c--cccCchhHHHHHHH
Confidence            11    35677899999999988774332    12222221 22222332221111111 00 0  01122 24555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024166          167 EAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLI  208 (271)
Q Consensus       167 ~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~  208 (271)
                      .++++.+++.++++++++.+|..+++..+++|+++.+++.+.
T Consensus       214 ~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       214 AGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            556688999999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.70  E-value=5.6e-16  Score=131.36  Aligned_cols=224  Identities=16%  Similarity=0.175  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC----
Q 024166            8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ----   83 (271)
Q Consensus         8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~----   83 (271)
                      .++.++|...+..+.|.+|.+++.+.++++|-...+||.+++..+  ++++++.+||++++...+|++++...|.-    
T Consensus        89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~--Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~  166 (372)
T KOG3912|consen   89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMF--LNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD  166 (372)
T ss_pred             ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHH--HhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence            456789999999999999999999999999999999999999999  99999999999999999999988765421    


Q ss_pred             --CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHH----Hhh-cc-----------
Q 024166           84 --TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPP----MLL-TG-----------  145 (271)
Q Consensus        84 --~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-----------  145 (271)
                        .+-++.+.|+++.+++-+.-|+++++.||.+++++ .+|.+.+.|..+++..++...    .++ .+           
T Consensus       167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n-V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~  245 (372)
T KOG3912|consen  167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN-VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVL  245 (372)
T ss_pred             CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcch
Confidence              12246799999999999999999999999998863 567888878777775543221    111 11           


Q ss_pred             -cHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHH
Q 024166          146 -ELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI  224 (271)
Q Consensus       146 -~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lv  224 (271)
                       |..+.+......|.....+....++-++.++.-....|..||++-.++-.+|..+..+++.....|.+...|+.|..+.
T Consensus       246 eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliL  325 (372)
T KOG3912|consen  246 EDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLIL  325 (372)
T ss_pred             hhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence             1122222223344432222222233233345556788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 024166          225 AMGITLKLLP  234 (271)
Q Consensus       225 l~Gv~l~~~~  234 (271)
                      +.|+.+|+-.
T Consensus       326 i~Gi~lY~~i  335 (372)
T KOG3912|consen  326 IMGIILYNQI  335 (372)
T ss_pred             HHHHHHHHHH
Confidence            9999999743

>TIGR00803 nst UDP-galactose transporter

Probab=99.68  E-value=7.8e-16  Score=130.89  Aligned_cols=192  Identities=18%  Similarity=0.268  Sum_probs=141.2

Q ss_pred             cchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC-----------------------CC
Q 024166           29 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ-----------------------TS   85 (271)
Q Consensus        29 ~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~-----------------------~~   85 (271)
                      +++|.++..++.+++++++.++.+  .++|.+..|+++.++...|+......|.+                       ..
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~--~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~   79 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLA--AGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM   79 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccc--cceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc
Confidence            578999999999999999999999  89999999999999999998864433221                       01


Q ss_pred             CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHH-----Hhhc-ccHHHHHHHhhhchH
Q 024166           86 PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPP-----MLLT-GELFKAWNSCSQHLY  159 (271)
Q Consensus        86 ~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~  159 (271)
                      .++.+.|..+.+.++.++++..+++|+.+++++ .     ++|.+.+.+++..+.     .... ++......+.+.+|.
T Consensus        80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~-~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (222)
T TIGR00803        80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGD-T-----MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPT  153 (222)
T ss_pred             cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCC-C-----chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCch
Confidence            135688988899999999999999999765432 1     244433333332221     1111 111111111223343


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHH
Q 024166          160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK  231 (271)
Q Consensus       160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~  231 (271)
                      ....   ..+.+++++.+..+++|+.|+.+.++...++++++.++|+++|||++|..+++|..+++.|+++|
T Consensus       154 ~~~~---~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       154 AVWI---VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHH---HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            2222   22445778888999999999999999999999999999999999999999999999999998765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.66  E-value=1.2e-14  Score=128.51  Aligned_cols=203  Identities=12%  Similarity=0.148  Sum_probs=153.8

Q ss_pred             HHHHHHhhhHhhcCcchhHHHHHhh-cchHHHHHHHHhhcccccccChhh----HHHHHHHHHHHHHHhccCCCCCC---
Q 024166           15 LMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHE----YVSALLLVVGLILFTLADAQTSP---   86 (271)
Q Consensus        15 ~~~~~~l~~~al~~~~~~~~~i~~s-~~pi~v~~~~~ll~~l~e~~~~~~----~l~~~l~~~Gv~v~~~~~~~~~~---   86 (271)
                      +..++.+.+.+.++++++.+..+.+ ..++++.+.+.++  +|||.++++    +++++++++|+.+....+.+...   
T Consensus        69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~--f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~  146 (290)
T TIGR00776        69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIV--FGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKS  146 (290)
T ss_pred             HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhHheEEecccccccccc
Confidence            5667899999999999999987777 7888999999999  999999999    99999999999988765433211   


Q ss_pred             -CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHH---HHHHh-hHHHHHHHHhhcccHHHHHHHhhhchHHH
Q 024166           87 -NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF---CSTVV-GLPMLIPPMLLTGELFKAWNSCSQHLYVY  161 (271)
Q Consensus        87 -~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (271)
                       .+...|+++.++|.++|+.+....|+.  +.   ++....+   +.... +..+..+. ....+        ......|
T Consensus       147 ~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~---~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~--------~~~~~~~  212 (290)
T TIGR00776       147 EFNFKKGILLLLMSTIGYLVYVVVAKAF--GV---DGLSVLLPQAIGMVIGGIIFNLGH-ILAKP--------LKKYAIL  212 (290)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHc--CC---CcceehhHHHHHHHHHHHHHHHHH-hcccc--------hHHHHHH
Confidence             223789999999999999999888753  22   3444422   22222 22222221 00011        0111234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhh----hHHHHHHHHHHHHhcc
Q 024166          162 GVLVFEAMATFIGQVSVLSLIA-LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHG----TGLLLIAMGITLKLLP  234 (271)
Q Consensus       162 ~~l~l~~~~~~~~~~~~~~~i~-~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~----~G~~lvl~Gv~l~~~~  234 (271)
                      ..+. .++...+++.+++...+ +.++.++++++.++|+.+++++++++||+.++.++    +|.++++.|+.+....
T Consensus       213 ~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       213 LNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            3444 44446899999999999 99999999999999999999999999999999999    9999999999887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.60  E-value=1.8e-17  Score=138.69  Aligned_cols=250  Identities=14%  Similarity=0.169  Sum_probs=184.1

Q ss_pred             CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166            3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA   82 (271)
Q Consensus         3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~   82 (271)
                      ..||+|.++++...-++.+--.|.||++......+.+....-+++++|++  +|-|.++.|+.|++++++|+++++..|.
T Consensus        76 ~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~f--LktrYrlmki~gV~iCi~GvvmvV~sDV  153 (336)
T KOG2766|consen   76 AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFF--LKTRYRLMKISGVVICIVGVVMVVFSDV  153 (336)
T ss_pred             HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHH--HHHHHhhheeeeEEeEecceEEEEEeee
Confidence            45888888888888888888899999999999999998888899999999  9999999999999999999998887663


Q ss_pred             CC----CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhch
Q 024166           83 QT----SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL  158 (271)
Q Consensus        83 ~~----~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (271)
                      -.    .+.+...|+++.+.++-+||..++.+|.+.++-   +..+++....++++.+..+=.+.+.  .+ ....+++.
T Consensus       154 ~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i~~~--~~-~~tl~w~~  227 (336)
T KOG2766|consen  154 HAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFIFER--HH-VSTLHWDS  227 (336)
T ss_pred             ccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHhhhc--cc-eeeEeehH
Confidence            21    234678999999999999999999999887764   4567887778877766543211111  00 11111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCC
Q 024166          159 YVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK  238 (271)
Q Consensus       159 ~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~  238 (271)
                      ....++. ...+-++-+.+.-..+|..||+..++.....+..+++.  ..||-+++|...+..+.+..|.++|..+.+.+
T Consensus       228 ~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~  304 (336)
T KOG2766|consen  228 AIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDE  304 (336)
T ss_pred             HHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCc
Confidence            1112222 44555677777788999999999999999999999988  78888899999999999999999995444333


Q ss_pred             cccc-cccCCCccceeccccccchhh
Q 024166          239 PIKR-TATSSFKVNIRKLSFSEREEA  263 (271)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~~~~~  263 (271)
                      .+.+ +|..+--.+.+|..+||||++
T Consensus       305 ~e~r~~~v~~~~~~~~~L~~eed~~~  330 (336)
T KOG2766|consen  305 EELRKGQVVSEVRRPRKLLDEEDEQS  330 (336)
T ss_pred             HhhccCccccccccCccccCcccccc
Confidence            3322 211121123356666555544

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.57  E-value=5.6e-13  Score=114.35  Aligned_cols=206  Identities=13%  Similarity=0.145  Sum_probs=152.1

Q ss_pred             HHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHH
Q 024166           18 SHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMIS   97 (271)
Q Consensus        18 ~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~~~~~~G~~l~l   97 (271)
                      +.+..-+|..+=.+-.+......+|++.++++.++  +|||+++.||+++.++.+||..-.+...    +..+....+++
T Consensus        85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lf--lkErls~~Q~iAV~lA~~GV~~~~~~~g----~lpwval~la~  158 (293)
T COG2962          85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLF--LKERLSRLQWIAVGLAAAGVLIQTWLLG----SLPWVALALAL  158 (293)
T ss_pred             HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHH--HHhhccHHHHHHHHHHHHHHHHHHHHcC----CCcHHHHHHHH
Confidence            34455666666555556677778999999999999  9999999999999999999999887653    34566666665


Q ss_pred             HHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhh-hchHHHHHHHHHHHHHHHHHH
Q 024166           98 GALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS-QHLYVYGVLVFEAMATFIGQV  176 (271)
Q Consensus        98 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~~~~~~~~~  176 (271)
                          .+++|....|++ +    .+..+=.+.-.++-+|..+.+++..++-.+   +.. .++..+..+...+..|++...
T Consensus       159 ----sf~~Ygl~RK~~-~----v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~vTavpL~  226 (293)
T COG2962         159 ----SFGLYGLLRKKL-K----VDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGLVTAVPLL  226 (293)
T ss_pred             ----HHHHHHHHHHhc-C----CchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhHHHHHHHH
Confidence                688887654331 1    222332333333333443333333222111   122 344566677778888899999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCccc
Q 024166          177 SVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK  241 (271)
Q Consensus       177 ~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~  241 (271)
                      ++..+-|+.+=.+.++..+++|....+++++++||+++..+++..+++-.|+.+|.+..-++++|
T Consensus       227 lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~  291 (293)
T COG2962         227 LFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK  291 (293)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999998876554444

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.50  E-value=3.8e-15  Score=125.60  Aligned_cols=218  Identities=12%  Similarity=0.114  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC-----C
Q 024166            9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA-----Q   83 (271)
Q Consensus         9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~-----~   83 (271)
                      ..-++..+.+..+.++|++|.+.+-++++..++|++|++++|.+  +|||++..+.++....+.|++++...+.     .
T Consensus       101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~--LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t  178 (346)
T KOG4510|consen  101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAF--LKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTT  178 (346)
T ss_pred             EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHH--HcCCCcHHHHHHHHHhhheEEEEecCCcccCCCc
Confidence            34466777888999999999999999999999999999999999  9999999999999999999998865331     1


Q ss_pred             C----CC-CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhch
Q 024166           84 T----SP-NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL  158 (271)
Q Consensus        84 ~----~~-~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (271)
                      .    .. +.+..|....+.+++.-+-..++-+++ .|.  .+..-.+-|..+++++..++.+..-|+.    ...+ ..
T Consensus       179 ~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i-Gk~--~h~~msvsyf~~i~lV~s~I~~~~ig~~----~lP~-cg  250 (346)
T KOG4510|consen  179 EGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYI-GKN--AHAIMSVSYFSLITLVVSLIGCASIGAV----QLPH-CG  250 (346)
T ss_pred             cccccccccccCCchHHHHHhHhhhhhHHHHHHHh-hcc--ccEEEEehHHHHHHHHHHHHHHhhccce----ecCc-cc
Confidence            0    11 345778888887777665555555443 222  2222223344444544443332222321    1101 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166          159 YVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       159 ~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                      ..|..+...++.++++|++..+++++=-|...++..+..-+++.++-+++|||.+|++.|+|+++++.+..+....|-
T Consensus       251 kdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw  328 (346)
T KOG4510|consen  251 KDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW  328 (346)
T ss_pred             cceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence            123334444577899999999999999999999999999999999999999999999999999999999888775543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.42  E-value=8.9e-11  Score=98.71  Aligned_cols=215  Identities=13%  Similarity=0.049  Sum_probs=160.2

Q ss_pred             chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166            4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ   83 (271)
Q Consensus         4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~   83 (271)
                      .|+..+..|.+-...+.+.|.+++.+|.+.+..+-.+-|+.++++   -   .|  +.++.+.+.+.+.|+.+......+
T Consensus        70 ~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~---~---sR--r~~d~vwvaLAvlGi~lL~p~~~~  141 (292)
T COG5006          70 QRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL---S---SR--RLRDFVWVALAVLGIWLLLPLGQS  141 (292)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHH---h---cc--chhhHHHHHHHHHHHHhheeccCC
Confidence            456777888888889999999999999999999999999865543   2   12  234556677888898877543322


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-H
Q 024166           84 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-G  162 (271)
Q Consensus        84 ~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  162 (271)
                       ....+..|..+++.+..||+.|-+.-+|.-+.   .+.-+-+.....++.++.+|.-.....    ..  ..+|... .
T Consensus       142 -~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~---~~g~~g~a~gm~vAaviv~Pig~~~ag----~~--l~~p~ll~l  211 (292)
T COG5006         142 -VWSLDPVGVALALGAGACWALYIVLGQRAGRA---EHGTAGVAVGMLVAALIVLPIGAAQAG----PA--LFSPSLLPL  211 (292)
T ss_pred             -cCcCCHHHHHHHHHHhHHHHHHHHHcchhccc---CCCchHHHHHHHHHHHHHhhhhhhhcc----hh--hcChHHHHH
Confidence             22457899999999999999998887775432   122333445555555555554332211    11  1355543 3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166          163 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       163 ~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                      -+.++.+++++.|.+--..+++.++-+.++...++|.++.+.+++++||.+|+.||+|++.|+.+..-..+.-+
T Consensus       212 aLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~  285 (292)
T COG5006         212 ALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR  285 (292)
T ss_pred             HHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence            45666788899999999999999999999999999999999999999999999999999999999875555433

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.16  E-value=3.7e-10  Score=86.29  Aligned_cols=123  Identities=11%  Similarity=0.162  Sum_probs=93.1

Q ss_pred             HHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHH
Q 024166          102 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEAMATFIGQVSVLS  180 (271)
Q Consensus       102 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~  180 (271)
                      ++|.+.++.|+..++   .++....++....+.+ .++.........    ....++. ....+..+.+++.+++.++++
T Consensus         2 ~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (126)
T PF00892_consen    2 SWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFY   73 (126)
T ss_pred             eeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHH
Confidence            578888888887766   3567788887777765 333322222211    1112222 234455555667899999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166          181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL  232 (271)
Q Consensus       181 ~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~  232 (271)
                      ++++.++..++++..+.|+++.++++++++|++++.+++|+++++.|+.+..
T Consensus        74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.04  E-value=7.4e-10  Score=83.85  Aligned_cols=134  Identities=16%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024166           93 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF  172 (271)
Q Consensus        93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~  172 (271)
                      .++++.|+.++++..++.|.-.+..   +|..-.+-.++....++....+..|......   ..++..|.++.++++.+.
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v---dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~---~~~~k~~lflilSGla~g   78 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV---DPDFATTIRTIVILIFLLIVLLVTGNWQAGG---EIGPKSWLFLILSGLAGG   78 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHHHHHHHHhcCceeccc---ccCcceehhhhHHHHHHH
Confidence            5678899999999988876554432   2222233344444444444445566532111   124556778888999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166          173 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL  232 (271)
Q Consensus       173 ~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~  232 (271)
                      ++-.+||+.++.=.+..+..+.-..+++++++|++++||++|..+|+|..++..|..+..
T Consensus        79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999999999999999999987654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.98  E-value=5.9e-08  Score=86.08  Aligned_cols=140  Identities=10%  Similarity=0.032  Sum_probs=106.7

Q ss_pred             chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHH
Q 024166           88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE  167 (271)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  167 (271)
                      +...|.++.+.+++++|...+..|. ..   +.++.++.++...++.+++++.....++..+... ..+++..+......
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~-~~---~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   79 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKL-IY---YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT-LIQTPQKIFMLAVS   79 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH-hc---CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-HHcCHHHHHHHHHH
Confidence            3568999999999999999998854 32   2467888899888887766654444333211111 11123333333345


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166          168 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL  232 (271)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~  232 (271)
                      +++.+..+.++++++++.++..++++..+.|+++.++++++++|+++..+|+|+++.+.|+.+..
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            55566778999999999999999999999999999999999999999999999999999998765

>TIGR00688 rarD rarD protein

Probab=98.98  E-value=4.7e-08  Score=84.73  Aligned_cols=138  Identities=7%  Similarity=0.061  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhh--chHHHHHHHHHH
Q 024166           91 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ--HLYVYGVLVFEA  168 (271)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~l~~  168 (271)
                      .|.++.+++++++|...+..|. ..+   .++.++.++-.+++.+++++.....+...+.......  ..+.+..+.+.+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   77 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG   77 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence            4889999999999999999875 332   4688999998888877665543333322111111111  112233344445


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166          169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL  232 (271)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~  232 (271)
                      +..++.+.+++.++++.++..++++..+.|+++.++++++++|+++..+++|..+.+.|+.+..
T Consensus        78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            5566778999999999999999999999999999999999999999999999999999988654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.91  E-value=3.5e-09  Score=86.18  Aligned_cols=218  Identities=15%  Similarity=0.168  Sum_probs=156.9

Q ss_pred             hHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCC
Q 024166            7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSP   86 (271)
Q Consensus         7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~   86 (271)
                      ...+.++++.+++++.-.||..++.+.++.+..+.-.||.+++++.  +|+|+...++++..+++.|++++++.|+..  
T Consensus        55 ~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IV--L~D~~~~~kIlaailAI~GiVmiay~DN~~--  130 (290)
T KOG4314|consen   55 RTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIV--LGDRFMGFKILAAILAIGGIVMIAYADNEH--  130 (290)
T ss_pred             eecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHH--hccchhhhhHHHHHHHhCcEEEEEeccchh--
Confidence            4456677788889999999999999999999999999999999999  999999999999999999999999877643  


Q ss_pred             CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhH---HHHHHHhhHHHHHHHH--hhcccHHHHHHHhhhchHHH
Q 024166           87 NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEM---LFCSTVVGLPMLIPPM--LLTGELFKAWNSCSQHLYVY  161 (271)
Q Consensus        87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  161 (271)
                      ...+.|+..+..|+...++|-++.|+......--+.-..   +-+.+++  ...+|.+  .+++.  +.++.+...|  |
T Consensus       131 a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~--~~~~~~lIL~~T~V--E~~qsFA~~P--W  204 (290)
T KOG4314|consen  131 ADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLC--FISFPALILAFTGV--EHLQSFAAAP--W  204 (290)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH--HHhhhHHHHHHhch--HHHHHHhhCC--c
Confidence            347999999999999999999998876654211011111   1122221  1122322  34442  3333222233  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166          162 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       162 ~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~  234 (271)
                      ..+--...-+...+...+.++....|...|+-..+..........++-+-.++...+.|..+++.|..+....
T Consensus       205 G~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP  277 (290)
T KOG4314|consen  205 GCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP  277 (290)
T ss_pred             hhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence            2222111222233455677888889999888888888888888888888788999999999999998776543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.88  E-value=2.8e-08  Score=88.16  Aligned_cols=214  Identities=14%  Similarity=0.176  Sum_probs=125.8

Q ss_pred             HHHHHHH-HHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCC
Q 024166            8 YVKLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSP   86 (271)
Q Consensus         8 ~~~~~~l-~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~   86 (271)
                      ....|++ +.++..++..|+.+.|.+..+-+.+...++.++++..+  +|||++++++.|++++++|..++....++..+
T Consensus        52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~--l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~  129 (300)
T PF05653_consen   52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFF--LGEKLTRRDIVGCALIILGSVLIVIFAPKEEP  129 (300)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHH--hcccchHhHHhhHHHHHhhheeeEEeCCCCCC
Confidence            3444443 45677899999999999999999999999999999999  99999999999999999999877653332211


Q ss_pred             Cc------------hHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHH----HHHh----hccc
Q 024166           87 NF------------SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLI----PPML----LTGE  146 (271)
Q Consensus        87 ~~------------~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~  146 (271)
                      ..            .+..+........+     .+.-...+|+++.+..--...+++++..-.+    ....    +.|+
T Consensus       130 ~~t~~~l~~~~~~~~fl~y~~~~~~~~~-----~L~~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~  204 (300)
T PF05653_consen  130 IHTLDELIALLSQPGFLVYFILVLVLIL-----ILIFFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGD  204 (300)
T ss_pred             cCCHHHHHHHhcCcceehhHHHHHHHHH-----HHHHhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCc
Confidence            11            11112111111111     1111111222211111000111222211100    0001    1111


Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHhCC--Cchh----hhh
Q 024166          147 LFKAWNSCSQHLYVYGVLVFEAMATFIGQ-VSVLSLIALFGAATTA-MVTTARKAVTLLLSYLIFTK--PLTE----QHG  218 (271)
Q Consensus       147 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~i~~~~a~~~s-i~~~l~~v~~~lls~~~f~e--~~s~----~~~  218 (271)
                           + ...+|..|..+.....| .+.| ...+++++++++.... +....-...+++-|.++|+|  ..++    ...
T Consensus       205 -----~-~f~~~~~y~l~~~~v~~-~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~  277 (300)
T PF05653_consen  205 -----N-QFTYPLTYLLLLVLVVT-AVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFL  277 (300)
T ss_pred             -----h-hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence                 0 11355556555555445 4555 5568899999998643 34444666888889999997  5566    345


Q ss_pred             hHHHHHHHHHHHHhccC
Q 024166          219 TGLLLIAMGITLKLLPA  235 (271)
Q Consensus       219 ~G~~lvl~Gv~l~~~~k  235 (271)
                      .|..+++.|+++-...|
T Consensus       278 ~G~~~ii~GV~lL~~~~  294 (300)
T PF05653_consen  278 CGFLIIIIGVFLLSSSK  294 (300)
T ss_pred             HHHHHHHHhhheeeccC
Confidence            67777888988776444

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.83  E-value=2e-08  Score=76.33  Aligned_cols=78  Identities=14%  Similarity=0.252  Sum_probs=68.4

Q ss_pred             CchhhHHHHHHHHH-HHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166            3 NPWKTYVKLSAVLM-GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus         3 ~~~~~~~~~~~l~~-~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      ++++.....+.+.. .+..+.++|++|.+ +...++.++.|++++++++++  +|||++++++++++++++|++++.++|
T Consensus        32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~--~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF--FKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            45555566677775 78889999999999 578899999999999999999  999999999999999999999999887


Q ss_pred             CC
Q 024166           82 AQ   83 (271)
Q Consensus        82 ~~   83 (271)
                      .+
T Consensus       109 ~~  110 (113)
T PF13536_consen  109 LT  110 (113)
T ss_pred             cc
Confidence            54

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.79  E-value=1.6e-07  Score=82.55  Aligned_cols=133  Identities=12%  Similarity=0.142  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024166           93 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF  172 (271)
Q Consensus        93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~  172 (271)
                      +++.+.++++++...+.+|+..++.   ++.  .++.....++.+.|........ ..+  ...+...|..+.+.+++..
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~   74 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE---PDF--LWWALLAHSVLLTPYGLWYLAQ-VGW--SRLPATFWLLLAISAVANM   74 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch---hHH--HHHHHHHHHHHHHHHHHHhccc-CCC--CCcchhhHHHHHHHHHHHH
Confidence            4577889999999999987655442   222  3444444555555433321100 000  0011234445556666777


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166          173 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       173 ~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      ..+.++++++++.++...+++....|+++.++++++++|+++..+|+|+++++.|+.+...
T Consensus        75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            8888999999999999999999999999999999999999999999999999999987664

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.76  E-value=6e-07  Score=69.68  Aligned_cols=121  Identities=12%  Similarity=0.136  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHH
Q 024166           91 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA  170 (271)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~  170 (271)
                      .|+++.+.+.++.+...++-|+-.++.++.+   .... ..   ..+.               ...+|.  ..++++.++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~---~~~~-~~---~~~~---------------~~~~p~--~~i~lgl~~   57 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLS---HAWD-FI---AALL---------------AFGLAL--RAVLLGLAG   57 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhH-HH---HHHH---------------HHhccH--HHHHHHHHH
Confidence            4788999998888888887776655543221   1100 10   0000               001231  235556678


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          171 TFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYL--IFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       171 ~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~--~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      .++++.+|.+.+++.+...+..+..+.+....+.++.  +|||++|+.+++|+++++.|+++..+.+
T Consensus        58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            8899999999999999999999888888888888885  8999999999999999999999977543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.76  E-value=1.4e-06  Score=75.43  Aligned_cols=206  Identities=14%  Similarity=0.138  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHhhhHhhcCcchhHHHHHh-hcchHHHHHHHHhhcccccccChhhHH----HHHHHHHHHHHHhccCCC
Q 024166            9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFK-STKVLPVMVMGAFIPGLRRKYPAHEYV----SALLLVVGLILFTLADAQ   83 (271)
Q Consensus         9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~-s~~pi~v~~~~~ll~~l~e~~~~~~~l----~~~l~~~Gv~v~~~~~~~   83 (271)
                      +.-++++.+++..++.|.+++.++...-+. ....+.+.+++.++  |+|-.+.++++    +++++++|+.+.++.|.+
T Consensus        49 ~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~--fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~  126 (269)
T PF06800_consen   49 FLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLF--FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK  126 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhh--cCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence            444556678889999999988775444332 24556688999999  99988877774    889999999999987765


Q ss_pred             CC----CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHH-HhhcccHHHHHHHhhhch
Q 024166           84 TS----PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPP-MLLTGELFKAWNSCSQHL  158 (271)
Q Consensus        84 ~~----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  158 (271)
                      ..    ..+...|++..+++.+.|..|.+..+.     .+.+++...+ ....++.+.... ......   .  .  .+.
T Consensus       127 ~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-----~~~~~~~~~l-PqaiGm~i~a~i~~~~~~~---~--~--~~k  193 (269)
T PF06800_consen  127 SDKSSSKSNMKKGILALLISTIGYWIYSVIPKA-----FHVSGWSAFL-PQAIGMLIGAFIFNLFSKK---P--F--FEK  193 (269)
T ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHHHHh-----cCCChhHhHH-HHHHHHHHHHHHHhhcccc---c--c--ccc
Confidence            43    224577999999999999888877543     2234454443 233333322111 111111   0  0  111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhh----hhhHHHHHHHHHHH
Q 024166          159 YVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQ----HGTGLLLIAMGITL  230 (271)
Q Consensus       159 ~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~----~~~G~~lvl~Gv~l  230 (271)
                      ..|..++-+ +.=.+++.+++...++.|..+.=.++-+..+++.+.+.+++||+=+..    .++|.++++.|..+
T Consensus       194 ~~~~nil~G-~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  194 KSWKNILTG-LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             chHHhhHHH-HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            223333322 232588888999999999999999999999999999999999976654    55688888777653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.66  E-value=1.4e-06  Score=66.11  Aligned_cols=103  Identities=17%  Similarity=0.278  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024166          132 VGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTK  211 (271)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e  211 (271)
                      ++.+++.......+...+.......++..| .+..+.++...++..++++.++.++ .++++..+.|+++.+++.++++|
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~e   84 (113)
T PF13536_consen    7 FSVLFLLIILLIRGRLRDLFRALRRKPWLW-LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKE   84 (113)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence            344444444344455444443333444333 2222333334778899999999995 77799999999999999999999


Q ss_pred             CchhhhhhHHHHHHHHHHHHhccCC
Q 024166          212 PLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       212 ~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                      +++..+++|..+++.|+.+..+.+.
T Consensus        85 r~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   85 RLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999887654

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.40  E-value=1.5e-05  Score=72.51  Aligned_cols=136  Identities=10%  Similarity=0.118  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 024166           95 MISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIG  174 (271)
Q Consensus        95 l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~  174 (271)
                      .++.--++|+-.+++.|..++..  .++..+.+|-..++.++++|..+..... ....  ..+...|..+.+.++++++.
T Consensus        17 ~~~~~q~~~~~~~~~~k~a~~~G--~~~~~~~~~R~~iA~l~Ll~~~~~~~~~-~~~~--~~~~~~~~~l~l~g~~g~~~   91 (358)
T PLN00411         17 AMLATETSVVGISTLFKVATSKG--LNIYPFLGYSYLLASLLLLPSLFFTNRS-RSLP--PLSVSILSKIGLLGFLGSMY   91 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHHHHHHHHHHHHh-cccC--cchHHHHHHHHHHHHHHHHH
Confidence            33444566777778887777543  3466777888777776666543322110 0000  01112333444444554556


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------hCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          175 QVSVLSLIALFGAATTAMVTTARKAVTLLLSYLI------FTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       175 ~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~------f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      +.+++.++++++|..++++..+.|+++.++++++      ++|+++..+++|+++.+.|+.+....+
T Consensus        92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~  158 (358)
T PLN00411         92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH  158 (358)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence            6788999999999999999999999999999999      699999999999999999998776543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.39  E-value=1e-05  Score=69.93  Aligned_cols=118  Identities=14%  Similarity=0.067  Sum_probs=85.6

Q ss_pred             HhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024166          104 SFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIA  183 (271)
Q Consensus       104 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~  183 (271)
                      |...+..|..++.  ..++....++..+.+.+++.+.....          ....+....+..+.++..+.+.+++.+++
T Consensus         2 g~~~~~~k~~~~~--~~~~~~~~~~r~~~~~l~l~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~   69 (260)
T TIGR00950         2 GTTGVVIGQYLEG--QVPLYFAVFRRLIFALLLLLPLLRRR----------PPLKRLLRLLLLGALQIGVFYVLYFVAVK   69 (260)
T ss_pred             cchHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhc----------cCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555554443  23566777776666665554432211          01112233455555666778889999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166          184 LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       184 ~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      +.++..++++..+.|+++.+++.++++|+++..+++|+.+.+.|+.+...
T Consensus        70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            99999999999999999999999999999999999999999999988753

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.37  E-value=1.8e-05  Score=68.56  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHH
Q 024166           89 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA  168 (271)
Q Consensus        89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~  168 (271)
                      ...|+++.+.|-+.+|+...+.+. .+.   .++.++..|-.+++.++.+..+.......+..+ ..++|..+..+.+.+
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a   79 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKL-LEP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTA   79 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHH-Hcc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHH
Confidence            457999999999999999988754 343   246788889888888877665555444333333 345776554444333


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      .--..--..+.+...+=....+|.--.+.|++.+++|.++++|++|..||+..++...||....+..
T Consensus        80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            2212223556788888889999999999999999999999999999999999999999998877654

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.4e-06  Score=76.18  Aligned_cols=212  Identities=14%  Similarity=0.126  Sum_probs=126.8

Q ss_pred             HHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCC--------
Q 024166           14 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS--------   85 (271)
Q Consensus        14 l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~--------   85 (271)
                      .+.++...++.|+.|.|.+..+-+-+.+.+..++++..+  +|||++..-.+|++++++|-.+++...++..        
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~--L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el  150 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFF--LKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEV  150 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHH--HHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHH
Confidence            345678899999999999999999999999999999999  9999999999999999999888877654432        


Q ss_pred             ----CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHh---hcccHHHHHH--Hhhh
Q 024166           86 ----PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPML---LTGELFKAWN--SCSQ  156 (271)
Q Consensus        86 ----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~  156 (271)
                          .+..+..+.....-.++     ++.-....+++.   -.++.|..+.+..-.+-.+-   +...+.....  .-..
T Consensus       151 ~~~~~~~~Fliy~~~iil~~~-----il~~~~~p~~g~---tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~  222 (335)
T KOG2922|consen  151 WELATEPGFLVYVIIIILIVL-----ILIFFYAPRYGQ---TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLF  222 (335)
T ss_pred             HHHhcCccHHHHHHHHHHHHH-----HHheeecccccc---cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccc
Confidence                11222222222221111     110011112221   12334544433321110000   0000111110  0012


Q ss_pred             chHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhCC--Cchh----hhhhHHHHHHHHH
Q 024166          157 HLYVYGVLVFEAMATFIGQ-VSVLSLIALFGAATTAMVT-TARKAVTLLLSYLIFTK--PLTE----QHGTGLLLIAMGI  228 (271)
Q Consensus       157 ~~~~~~~l~l~~~~~~~~~-~~~~~~i~~~~a~~~si~~-~l~~v~~~lls~~~f~e--~~s~----~~~~G~~lvl~Gv  228 (271)
                      +|..|..+.....| +..| .-.+++++.+++..++.+. ..-..++++-|.++|+|  ..+.    ....|...++.|+
T Consensus       223 ~~~ty~~~l~~~~~-~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~  301 (335)
T KOG2922|consen  223 YPLTWIFLLVVATC-VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGI  301 (335)
T ss_pred             cHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhee
Confidence            45555544444344 3444 4458999999888755444 44777888999999997  3343    4567788899998


Q ss_pred             HHHhccCC
Q 024166          229 TLKLLPAD  236 (271)
Q Consensus       229 ~l~~~~k~  236 (271)
                      ++....|.
T Consensus       302 flL~~~kd  309 (335)
T KOG2922|consen  302 FLLHRTKD  309 (335)
T ss_pred             eEeeeecc
Confidence            88754443

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.32  E-value=1.5e-06  Score=66.14  Aligned_cols=71  Identities=11%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             hhHHHHHHH-HHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHh
Q 024166            6 KTYVKLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT   78 (271)
Q Consensus         6 ~~~~~~~~l-~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~   78 (271)
                      ......+++ ..++..+.+.++++++++..+++..+.|+++.++++++  +||++++++++++.++++|+.++.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~--~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   54 LWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLF--LGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHH
Confidence            345555665 46788999999999999999999999999999999999  999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.21  E-value=7.8e-06  Score=61.82  Aligned_cols=65  Identities=11%  Similarity=0.043  Sum_probs=59.7

Q ss_pred             HHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhc
Q 024166           13 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL   79 (271)
Q Consensus        13 ~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~   79 (271)
                      +++..+..+...+++.+|.+.+..+-++.+++++++++++  +|||++.+|++++.++++|+.++..
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~--f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL--WHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3456788899999999999999999999999999999999  9999999999999999999988753

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.15  E-value=3.5e-05  Score=58.25  Aligned_cols=64  Identities=14%  Similarity=0.122  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166          169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL  232 (271)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~  232 (271)
                      ++-.+++.++...+++.+...+.....+.++.+.++|+++|||++|+.+++|+.+++.|+.+..
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4445678889999999999998888889999999999999999999999999999999998754

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.14  E-value=0.00015  Score=64.08  Aligned_cols=128  Identities=16%  Similarity=0.043  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHH-HHHHHHHHHHHH
Q 024166           96 ISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYG-VLVFEAMATFIG  174 (271)
Q Consensus        96 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~~~~~~~~  174 (271)
                      .+.-.+.||...+..|...+   +.++.+..++-..++.+++++.....+..     .  .+...|. ....+.+....+
T Consensus        13 ~~~~~~iWg~~~~~~K~~~~---~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~--~~~~~~~~~~~~g~~~~~~~   82 (292)
T PRK11272         13 LFALYIIWGSTYLVIRIGVE---SWPPLMMAGVRFLIAGILLLAFLLLRGHP-----L--PTLRQWLNAALIGLLLLAVG   82 (292)
T ss_pred             HHHHHHHHhhHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----C--CcHHHHHHHHHHHHHHHHHH
Confidence            34446788998888875444   34678888888887776665543332210     0  0111222 233333333455


Q ss_pred             HHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166          175 QVSVLSLI-ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       175 ~~~~~~~i-~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~  234 (271)
                      +.+++... ++.++..+++...+.|+++.+++.+ ++|+++..+++|..+.+.|+.+....
T Consensus        83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            66667777 8889999999999999999999985 79999999999999999999877543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.09  E-value=0.00014  Score=66.14  Aligned_cols=139  Identities=14%  Similarity=0.066  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHH
Q 024166           90 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAM  169 (271)
Q Consensus        90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~  169 (271)
                      +.-..+++.--.+......++|.+++..+  .|+.+..+..+++.++..+.... +- .+... .......|..++..++
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~--~P~~l~~~~~~~~~l~~~~~~~~-~~-~~~~~-~~~~~~~~~~llp~gl  122 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALNMLP--LPWTISSLQLFVGWLFALLYWAT-GF-RKIPR-IKSLKLFLKNFLPQGL  122 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hhHHHHHHHHHHHHHHHHHHHHh-CC-CCCCC-CCCHHHHHHHHHHHHH
Confidence            33333343333344555677888776642  26777766666654443322111 10 00000 0001123444555556


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166          170 ATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       170 ~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      ++..++...+.+++..++..++++..+.|++++++++++++|+++..++.|+++++.|+.+...
T Consensus       123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            6666676677999999999999999999999999999999999999999999999999998763

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.09  E-value=0.00012  Score=64.99  Aligned_cols=120  Identities=15%  Similarity=0.118  Sum_probs=82.6

Q ss_pred             hHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024166          106 LGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALF  185 (271)
Q Consensus       106 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~  185 (271)
                      .+.++|..++..  ..|..+.+.....+.....+. ...+. .+.   ...+...|..+...+++.++.+.+.+.+++++
T Consensus        17 ~~~~NK~~l~~~--~~P~~~~~~~~~~~~~~~~~~-~~~~~-~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~   89 (302)
T TIGR00817        17 FNIYNKKLLNVF--PYPYFKTLISLAVGSLYCLLS-WSSGL-PKR---LKISSALLKLLLPVAIVHTIGHVTSNVSLSKV   89 (302)
T ss_pred             HHHHHHHHHhhC--ChhHHHHHHHHHHHHHHHHHH-HHhCC-CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            346777777643  235655555555544333221 00110 000   00112234445555556677788899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166          186 GAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL  232 (271)
Q Consensus       186 ~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~  232 (271)
                      ++...+++..+.|+++.++++++++|+++..++.|.++.+.|+.+..
T Consensus        90 s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        90 AVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             cHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999998654

specificities overlap.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.09  E-value=0.00013  Score=64.92  Aligned_cols=131  Identities=15%  Similarity=0.165  Sum_probs=89.5

Q ss_pred             HhhHhHHHHHHhhCCCC-ChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024166          104 SFLGNLQEAIFTMNPET-TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLI  182 (271)
Q Consensus       104 a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i  182 (271)
                      ..+..+||++.++.... .+.-+.+.+....+....+.......     ......| ...+ ...+++..++..+.+..+
T Consensus        13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~-~~~~~~~~~~~~~~~~al   85 (303)
T PF08449_consen   13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-----PKSRKIP-LKKY-AILSFLFFLASVLSNAAL   85 (303)
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-----cCCCcCh-HHHH-HHHHHHHHHHHHHHHHHH
Confidence            34557899998876443 23444444444444443332222220     0001122 1222 233455567778888999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCccc
Q 024166          183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK  241 (271)
Q Consensus       183 ~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~  241 (271)
                      ++.+-.+..+....+++.+++++.++++++.+..++++..++..|+.+....+.+.+++
T Consensus        86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~  144 (303)
T PF08449_consen   86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS  144 (303)
T ss_pred             HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence            99999999999999999999999999999999999999999999999998776544443

; GO: 0055085 transmembrane transport

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.08  E-value=0.00014  Score=64.53  Aligned_cols=130  Identities=15%  Similarity=0.054  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHH
Q 024166           91 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA  170 (271)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~  170 (271)
                      .++++++.++++||......|...+.   .+|....++-...+.+++++.  . . .++    ..+++  +..+...++.
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~---~~P~~~~~~R~~~a~l~l~~~--~-~-~~~----~~~~~--~~~~~~~~l~   70 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSES---LGPVGGAAMIYSVSGLLLLLT--V-G-FPR----LRQFP--KRYLLAGGLL   70 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHHHH--c-c-ccc----ccccc--HHHHHHHhHH
Confidence            45777888899999999888765544   357777776666665554432  1 1 111    01111  2222333333


Q ss_pred             HHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166          171 TFIGQVSVLSLIA----LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       171 ~~~~~~~~~~~i~----~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      ....+.+.+..++    ..++..++++..+.|+++.++++++++|+++..+++|+++.+.|+.+...
T Consensus        71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689         71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence            2233344455554    45777889999999999999999999999999999999999999987664

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.04  E-value=0.00029  Score=62.52  Aligned_cols=124  Identities=10%  Similarity=0.039  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHH-
Q 024166           94 IMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF-  172 (271)
Q Consensus        94 ~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-  172 (271)
                      ++.+.++++||...+..|...++   .++....++-..++.+.+++.  ....         +.+  +..+...++... 
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~---~~p~~~~~~R~~~a~~~l~~~--~~~~---------~~~--~~~~~~~g~~~~~   70 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHN---MPPLMLAGLRFMLVAFPAIFF--VARP---------KVP--LNLLLGYGLTISF   70 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH--hcCC---------CCc--hHHHHHHHHHHHH
Confidence            45677888999999998765543   467888887776654433332  1110         111  111222222222 


Q ss_pred             HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166          173 IGQVSVLSLIAL-FGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       173 ~~~~~~~~~i~~-~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      ..+.+++...++ .++..++++..+.|+++.++++++++|+++..+++|.++.+.|+.+...
T Consensus        71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            233456677776 5778899999999999999999999999999999999999999987764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.94  E-value=6.4e-05  Score=58.35  Aligned_cols=72  Identities=14%  Similarity=0.103  Sum_probs=60.8

Q ss_pred             HHHHHH-HHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHh--hcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166            8 YVKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAF--IPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus         8 ~~~~~~-l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~l--l~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      +..+++ ++.++..+.+.+++..+.+.+.-+.+..++.+.+.++.  +  +||+++.++++|++++++|+.++..++
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~--~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPW--FNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            334444 66778999999999999999998888888888888885  7  899999999999999999999987543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.89  E-value=0.00038  Score=61.59  Aligned_cols=131  Identities=15%  Similarity=0.114  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHH
Q 024166           92 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMAT  171 (271)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~  171 (271)
                      |++++++++++||...+..|+.. .   .++.+.+ . ..++..+..........   . .  ...+..+..-.+.++.=
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g---~~~~~~~-~-~~~g~l~~~~~~~~~~~---~-~--~~~~~~~~~g~l~G~~w   69 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-G---GPYSQTL-G-TTFGALILSIAIAIFVL---P-E--FWALSIFLVGLLSGAFW   69 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-C---CHHHHHH-H-HHHHHHHHHHHHHHHhC---C-c--ccccHHHHHHHHHHHHH
Confidence            67899999999999999887653 1   2233333 2 22232222221111110   0 0  01133333223333333


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhCCCchhhh----hhHHHHHHHHHHHHhcc
Q 024166          172 FIGQVSVLSLIALFGAATTAMVTT-ARKAVTLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLP  234 (271)
Q Consensus       172 ~~~~~~~~~~i~~~~a~~~si~~~-l~~v~~~lls~~~f~e~~s~~~----~~G~~lvl~Gv~l~~~~  234 (271)
                      .+++.+++.++++.|...+-.+.+ +.++...+++.++|||+.+..+    ++|.++++.|+.+....
T Consensus        70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            578899999999999999877766 8888999999999999999999    99999999998887544

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.88  E-value=0.00062  Score=61.34  Aligned_cols=139  Identities=14%  Similarity=0.074  Sum_probs=92.8

Q ss_pred             chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhH--HHHHH---HHhhcccHHHHHHHhhhchHHHH
Q 024166           88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGL--PMLIP---PMLLTGELFKAWNSCSQHLYVYG  162 (271)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  162 (271)
                      +...|+++++++.+|+|...+-+|| .++++    +|.. |- ..+.  .++.|   ..+..+++.+...  +.++..+.
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~----wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~--~~~~~~~~   74 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS----WETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYS--SFSGSTLL   74 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc----hhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHH--hcCHHHHH
Confidence            4678999999999999999988876 34332    4433 32 1111  11122   2223344333322  13444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCc-------hhhhhhHHHHHHHHHHHHhcc
Q 024166          163 VLVFEAMATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPL-------TEQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       163 ~l~l~~~~~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~-------s~~~~~G~~lvl~Gv~l~~~~  234 (271)
                      .-.+.++.=.+++..++..+++.|-+. ..+..-+.-+.+++++.+++||--       ....++|+++++.|+.+..+.
T Consensus        75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555689999999999999775 667777888999999999998622       245788999999999999874


Q ss_pred             C
Q 024166          235 A  235 (271)
Q Consensus       235 k  235 (271)
                      -
T Consensus       155 g  155 (345)
T PRK13499        155 G  155 (345)
T ss_pred             h
Confidence            3

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.86  E-value=0.0012  Score=57.26  Aligned_cols=142  Identities=13%  Similarity=0.094  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHH
Q 024166           89 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA  168 (271)
Q Consensus        89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~  168 (271)
                      ...+....+...+.++......+...+.  ..+.....++......+...+......    ........+ .+..+....
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~   77 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEP----RGLRPALRP-WLLLLLLAL   77 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhc----ccccccccc-hHHHHHHHH
Confidence            4567777777777888877776654433  123344444444444333221111100    000001111 233444555


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhhhhHHHHHHHHHHHHhccCCC
Q 024166          169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSY-LIFTKPLTEQHGTGLLLIAMGITLKLLPADD  237 (271)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~-~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~  237 (271)
                      ++.......++..+++.++..++++....|+++.+++. ++++|+++..++.|..+.+.|+.+.......
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            66677889999999999999999999999999999997 7779999999999999999999988866544

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.80  E-value=0.00029  Score=53.84  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          169 MATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      ++-++++.++...+++.+-.. .++...+..+.+.+.++++|||++|+.+++|+.+++.|+.......
T Consensus        38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            333567777888888877665 5666778889999999999999999999999999999998775443

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.80  E-value=0.00084  Score=60.41  Aligned_cols=78  Identities=10%  Similarity=0.203  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCC
Q 024166          160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK  238 (271)
Q Consensus       160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~  238 (271)
                      +|.+++++ ++=+-++.++..+.+.++.+...++.....++++++|++++++++++.+++|+++++.|+.+........
T Consensus        79 ~w~y~lla-~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~  156 (334)
T PF06027_consen   79 WWKYFLLA-LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS  156 (334)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence            45556554 6668899999999999999999999999999999999999999999999999999999999887665443

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.72  E-value=0.00056  Score=51.54  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          170 ATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       170 ~~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      +-.+++.++..++++.+-.. .++-..+..+.+.+.++++|||++|+.+++|+.+++.|+...+...
T Consensus        39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            33466677778888877665 6666778889999999999999999999999999999999886544

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.63  E-value=4e-05  Score=58.39  Aligned_cols=71  Identities=20%  Similarity=0.250  Sum_probs=60.4

Q ss_pred             hHHHHHHHH-HHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhc
Q 024166            7 TYVKLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL   79 (271)
Q Consensus         7 ~~~~~~~l~-~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~   79 (271)
                      .++.+|.+- ..+..+.+.|++.=+++-..-+..++|++++++++++  +|||++..+|+|+.++++|+.+++.
T Consensus        68 lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lf--L~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          68 LFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILF--LGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHH--hcCCCCHHHHHHHHHHHhCeeeEec
Confidence            345555554 4466788999999888888889999999999999999  9999999999999999999887653

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.61  E-value=0.00096  Score=57.56  Aligned_cols=71  Identities=17%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166          169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP  239 (271)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~  239 (271)
                      +.-++.+.+.+.++++.+|.+..+....|.+++.++++++++.+++..||+++.+...|+.+........+
T Consensus        25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~   95 (244)
T PF04142_consen   25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS   95 (244)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence            34456778889999999999999999999999999999999999999999999999999998887655443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.59  E-value=0.022  Score=51.47  Aligned_cols=221  Identities=9%  Similarity=0.019  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhccccccc-------ChhhHHHHHHHHHHHHHHhc--
Q 024166           10 KLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKY-------PAHEYVSALLLVVGLILFTL--   79 (271)
Q Consensus        10 ~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~-------~~~~~l~~~l~~~Gv~v~~~--   79 (271)
                      +-+++...++.....+.+|+.++...-+ .-...+...++..++  ++|=.       ...-.++++++++|+.+...  
T Consensus        78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~--~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag  155 (345)
T PRK13499         78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPII--NGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG  155 (345)
T ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH--ccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455567788899999999888666532 335566677777777  66432       23345799999999999988  


Q ss_pred             --cCCCC-----CCCchHHHHHHHHHHHHHHHhhH-------hHHHHHHhhCCCCChhhHHH-H-HHHhhHHH-HHHHHh
Q 024166           80 --ADAQT-----SPNFSMIGVIMISGALIMDSFLG-------NLQEAIFTMNPETTQMEMLF-C-STVVGLPM-LIPPML  142 (271)
Q Consensus        80 --~~~~~-----~~~~~~~G~~l~l~s~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~  142 (271)
                        .|.+.     .+.+.-.|+++++++.+.++.++       ...+...+. +..+++..+. + ..+.+..+ .+....
T Consensus       156 ~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~-g~~~~~~~lp~~~~~~~G~~~~n~~~~~  234 (345)
T PRK13499        156 QLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAAL-GVDPLYAALPSYVVIMGGGAITNLGFCF  234 (345)
T ss_pred             hhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc-CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence              54421     12356899999999999998888       443322111 1111221111 1 11111111 111111


Q ss_pred             h---cccHHHHHHHhh-hchHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHH---HH-HHHHHHHHHHHHHHhCC
Q 024166          143 L---TGELFKAWNSCS-QHLYVYGVL---VFEAMATFIGQVSVLSLIALFGAATTAM---VT-TARKAVTLLLSYLIFTK  211 (271)
Q Consensus       143 ~---~~~~~~~~~~~~-~~~~~~~~l---~l~~~~~~~~~~~~~~~i~~~~a~~~si---~~-~l~~v~~~lls~~~f~e  211 (271)
                      .   .++-.+...... ..+..+...   .+.++.=.+++.++...-++.|.....+   ++ .+.-+++.+.+. ++||
T Consensus       235 ~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE  313 (345)
T PRK13499        235 IRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKE  313 (345)
T ss_pred             HHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhh
Confidence            0   111000000000 111123222   2222332345566666667765444333   44 666688999999 4999


Q ss_pred             Cch------hhhhhHHHHHHHHHHHHhcc
Q 024166          212 PLT------EQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       212 ~~s------~~~~~G~~lvl~Gv~l~~~~  234 (271)
                      .=+      ...++|.++++.|..+....
T Consensus       314 ~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        314 WKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             ccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            666      66789999999998876643

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.58  E-value=0.00054  Score=52.37  Aligned_cols=73  Identities=8%  Similarity=0.148  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166            7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus         7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      .....-+++..+..+...+++++|.+.+..+ ...-.+.+.+.+.++  +||+++..+++++.++++|+..+...+
T Consensus        32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~--f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLL--FDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            4455566778889999999999999777655 457888899999999  999999999999999999999886644

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.44  E-value=0.01  Score=46.60  Aligned_cols=131  Identities=21%  Similarity=0.294  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024166           93 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF  172 (271)
Q Consensus        93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~  172 (271)
                      .++.+.+-++-+++..++.++-++.+  +++.-.+.+...+...+....++.++.  ........|+ |.  +++++.++
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~-w~--~lGG~lG~   75 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPW-WA--YLGGLLGV   75 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCCh-HH--hccHHHHH
Confidence            34555555566666666666655533  356555566666665555444444432  1111222233 33  33667777


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHH-Hh---CCCchhhhhhHHHHHHHHHHH
Q 024166          173 IGQVSVLSLIALFGAATTAMVTTARKA-VTLLLSYL-IF---TKPLTEQHGTGLLLIAMGITL  230 (271)
Q Consensus       173 ~~~~~~~~~i~~~~a~~~si~~~l~~v-~~~lls~~-~f---~e~~s~~~~~G~~lvl~Gv~l  230 (271)
                      +.-.+....+.+.|+..+........+ .+.++..+ +|   ++++++.+.+|.++++.|+.+
T Consensus        76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            777778889999999998888777554 45555664 23   368999999999999999864

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.43  E-value=0.0027  Score=56.42  Aligned_cols=120  Identities=18%  Similarity=0.145  Sum_probs=86.2

Q ss_pred             chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHH
Q 024166           88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE  167 (271)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  167 (271)
                      ....|..+++.++++.+...++||+-..|.++.+ ..--  ..                   .... .++|.||.=+.+.
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~-~~~~--~~-------------------~~~~-l~~~~W~~G~~~~   60 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS-LRAG--SG-------------------GRSY-LRRPLWWIGLLLM   60 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccc--ch-------------------hhHH-HhhHHHHHHHHHH
Confidence            4688999999999999999999998776653211 1100  00                   0001 1244444322222


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166          168 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~  234 (271)
                          .++....+..+...+++..+.++.+.-+++.+++..+++|+++...++|..+++.|..+....
T Consensus        61 ----~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   61 ----VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             ----hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence                244455556777788888999999999999999999999999999999999999998876544

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.42  E-value=0.00052  Score=54.35  Aligned_cols=69  Identities=9%  Similarity=0.136  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHh
Q 024166            8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT   78 (271)
Q Consensus         8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~   78 (271)
                      ...-+++.+..+...+..+++++.-++++....+.+.+.++++++  ++|+++.+++.|++++++|+.+..
T Consensus        84 ~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~--f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   84 LILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF--FGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh--cCCcCCHHHHHHHHHHHHHHheee
Confidence            344455567778899999999999999999999999999999999  999999999999999999998754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.37  E-value=0.0017  Score=48.94  Aligned_cols=71  Identities=13%  Similarity=0.185  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhhhHhhcCcchhHHHHHhh-cchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166            9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus         9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s-~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      ...-+++.++..+...+++.+|.+.+...-+ ...+.+.+.++++  |||+.+..+++++.++++|+..+...+
T Consensus        34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~--f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3445567778888899999999987776644 5777889999999  999999999999999999999886543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.36  E-value=0.0026  Score=47.26  Aligned_cols=63  Identities=21%  Similarity=0.097  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166          172 FIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       172 ~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~  234 (271)
                      .+++.+....+|+.+-.. .++-+-+..+.+.+.++++|+|++++.+++|+.+++.|+..-+..
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            466677778888877654 788899999999999999999999999999999999999876654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=97.35  E-value=0.001  Score=57.48  Aligned_cols=133  Identities=11%  Similarity=0.019  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHH-HHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHH
Q 024166           92 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPM-LIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA  170 (271)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~  170 (271)
                      |++.+++|++++|...+=.||    .++.+.+-...+.+. +..+ .+...++.+           .|..+..-.+++..
T Consensus         1 G~~a~~va~~~fGs~~vPvK~----~~~gDg~~fQw~~~~-~i~~~g~~v~~~~~-----------~p~f~p~amlgG~l   64 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKK----FDTGDGFFFQWVMCS-GIFLVGLVVNLILG-----------FPPFYPWAMLGGAL   64 (254)
T ss_pred             CchhHHHHHHHhcccceeeEe----ccCCCcHHHHHHHHH-HHHHHHHHHHHhcC-----------CCcceeHHHhhhhh
Confidence            677888899999988776543    333333322222222 1111 111111111           12221111222222


Q ss_pred             HHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHH-HhCC-----CchhhhhhHHHHHHHHHHHHhccCCCCcc
Q 024166          171 TFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYL-IFTK-----PLTEQHGTGLLLIAMGITLKLLPADDKPI  240 (271)
Q Consensus       171 ~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~-~f~e-----~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~  240 (271)
                      =+.|+.+..-+++..|-.. ..+-+...-+..-..|-+ +||.     .-.+.+.+|+++++.|..++...|..+++
T Consensus        65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~  141 (254)
T PF07857_consen   65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKE  141 (254)
T ss_pred             hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCC
Confidence            2344444455555555332 222222233333333332 4543     34789999999999999999988776644

The region concerned is approximately 280 residues long.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.0017  Score=48.22  Aligned_cols=75  Identities=11%  Similarity=0.096  Sum_probs=60.2

Q ss_pred             chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHH-HhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166            4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLM-FKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA   80 (271)
Q Consensus         4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i-~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~   80 (271)
                      ++++....-+++..+..+...|++++|.+.+.. ---.-.+.+.+.++++  |||+.+..+++++.++++|+...-..
T Consensus        29 ~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~--f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          29 RLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLL--FGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHh--cCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            344555666677888999999999999966553 3335667788999999  99999999999999999999977543

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.30  E-value=0.0038  Score=46.60  Aligned_cols=64  Identities=16%  Similarity=0.089  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166          170 ATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       170 ~~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      +-.+++.+....+|+.+-.. .++-..+..+.+.+.++++|||++|+.+++|+.+++.|+..-+.
T Consensus        38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            33466777778888877654 78888899999999999999999999999999999999987643

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.28  E-value=0.002  Score=48.08  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhh-cchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhc
Q 024166            7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL   79 (271)
Q Consensus         7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s-~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~   79 (271)
                      +....-+++..+..+...+++.+|.+.+..+=+ .-.+.+.+.+.++  +||+.+..+++++.++++|+.....
T Consensus        31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~--f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVL--LGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            344556677788899999999999976654433 6777888999999  9999999999999999999997643

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.26  E-value=0.0043  Score=46.60  Aligned_cols=61  Identities=16%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166          172 FIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL  232 (271)
Q Consensus       172 ~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~  232 (271)
                      .+++.+....+|+.+-.. .++-..+..+.+.+.++++|||++|+.+++|+.+++.|+...+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            466677778888877664 7888888999999999999999999999999999999998753

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.23  E-value=0.0024  Score=47.92  Aligned_cols=68  Identities=7%  Similarity=0.234  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHH
Q 024166            8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF   77 (271)
Q Consensus         8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~   77 (271)
                      ....-+++..+..+...+++++|.+.+..+ -..-.+.+.+.+.++  +||+.+..|++++.++++|+...
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~--f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWIL--FGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHh
Confidence            444556667788899999999999766543 335667788999999  99999999999999999999875

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.13  E-value=0.0017  Score=57.39  Aligned_cols=70  Identities=13%  Similarity=0.008  Sum_probs=61.4

Q ss_pred             HHHHHH-HHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166           10 KLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus        10 ~~~~l~-~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      .++++. .++..+.++++++++.+...++....|++.+++++++  ++|+++..+++|.+++++|+.......
T Consensus       213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~--lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        213 AVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIF--LGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            344443 4567788999999999999999999999999999999  999999999999999999999886543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.72  E-value=0.0087  Score=43.63  Aligned_cols=55  Identities=15%  Similarity=0.054  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHH
Q 024166          170 ATFIGQVSVLSLIALFGAATT-AMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI  224 (271)
Q Consensus       170 ~~~~~~~~~~~~i~~~~a~~~-si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lv  224 (271)
                      +-.+++.++...+|+.+...+ ++...+..+.+.+.|.++|||++|+.+++|+.++
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            445667788899999877764 6777789999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.63  E-value=0.0011  Score=57.06  Aligned_cols=72  Identities=18%  Similarity=0.422  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          164 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       164 l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      +++=++.++.|....++..++.+-..+.+++...|++++++++.+++|++|....+|..+.+.|+.+..+..
T Consensus       100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            344556667777888899999999999999999999999999999999999999999999999999887554

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.25  E-value=0.0053  Score=46.28  Aligned_cols=69  Identities=12%  Similarity=0.088  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHH
Q 024166            7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF   77 (271)
Q Consensus         7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~   77 (271)
                      +|...=.+|..+....++.+...+.+.+.-+ .+++-++|++.++++  .+|..+++.++|++++++|+.+.
T Consensus        43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~l--ge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLL--GEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHh--cCcccchhHHHHHHHHHcCeeee
Confidence            4555555677778888999999998887755 699999999999999  67888889999999999998753

Many members are annotated as potential transmembrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.23  E-value=0.012  Score=42.82  Aligned_cols=57  Identities=12%  Similarity=0.144  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhhhHhhcCcchhHHH-HHhhcchHHHHHHHHhhcccccccChhhHHHHHHH
Q 024166           12 SAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLL   70 (271)
Q Consensus        12 ~~l~~~~~~l~~~al~~~~~~~~~-i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~   70 (271)
                      -.++..+..+...+++++|.+.+. +......+.+.+.+.++  +||+++..|++++.++
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~--f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFF--FGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--H--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHhheeeC
Confidence            346778889999999999997765 44557888999999999  9999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.16  E-value=0.28  Score=38.92  Aligned_cols=138  Identities=18%  Similarity=0.189  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHH
Q 024166           90 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAM  169 (271)
Q Consensus        90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~  169 (271)
                      +...++.+.+-++-.++...+.++.+..+  +|.--.+.+...+...+....++.... +.+......|+ |.+  +.++
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pw-W~~--~GG~   77 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPW-WAW--IGGL   77 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCch-HHH--Hccc
Confidence            44555666666666777777766655433  234334445555555444333332221 11111222333 332  2334


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHhC----CCchhhhhhHHHHHHHHHHHHhc
Q 024166          170 ATFIGQVSVLSLIALFGAATTAMVTTARK-AVTLLLSYLIFT----KPLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       170 ~~~~~~~~~~~~i~~~~a~~~si~~~l~~-v~~~lls~~~f~----e~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      .+++.-..-.....+.|+.++..+..... +.++++..+=+.    .+++...++|+.+++.|+++...
T Consensus        78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            44444344456677888887766665544 344444444333    58899999999999999655543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.11  E-value=0.066  Score=46.67  Aligned_cols=79  Identities=20%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhCCCchhhhh----hHHHHHHHHHHHHhccC
Q 024166          161 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVT-TARKAVTLLLSYLIFTKPLTEQHG----TGLLLIAMGITLKLLPA  235 (271)
Q Consensus       161 ~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~-~l~~v~~~lls~~~f~e~~s~~~~----~G~~lvl~Gv~l~~~~k  235 (271)
                      +..-++.+++=.+++..++...++.|-+.+-.++ .+.-+.+.++++++|||.-+..++    +++++++.|+++..+.+
T Consensus        45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~  124 (269)
T PF06800_consen   45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD  124 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence            3333445555568999999999999988766655 456667899999999996665554    37788999998888665


Q ss_pred             CCCc
Q 024166          236 DDKP  239 (271)
Q Consensus       236 ~~~~  239 (271)
                      ++.+
T Consensus       125 ~~~~  128 (269)
T PF06800_consen  125 KKSD  128 (269)
T ss_pred             cccc
Confidence            4444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=96.02  E-value=0.19  Score=45.04  Aligned_cols=141  Identities=11%  Similarity=0.077  Sum_probs=85.5

Q ss_pred             CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHH-HHHHhhHHHHHHH---HhhcccHHHHHHHhhhch-HHH
Q 024166           87 NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF-CSTVVGLPMLIPP---MLLTGELFKAWNSCSQHL-YVY  161 (271)
Q Consensus        87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~  161 (271)
                      +..+.|+++..++.++.|.+.+=.||+ |++    .+|..= ...+++-++ +|.   .+..+++.+..   ...| ..+
T Consensus         3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~W----sWEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~---~~~~~~~l   73 (344)
T PF06379_consen    3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGW----SWESYWLVQGIFSWLI-VPWLWALLAIPDFFSIY---SATPASTL   73 (344)
T ss_pred             chHHHHHHHHHHHHHHhhhhccchhhc-CCc----cHHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHH---HhCChhHH
Confidence            356899999999999888887766654 333    244321 123333222 221   22334444433   2333 233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhCC-------CchhhhhhHHHHHHHHHHHHhc
Q 024166          162 GVLVFEAMATFIGQVSVLSLIALFGAA-TTAMVTTARKAVTLLLSYLIFTK-------PLTEQHGTGLLLIAMGITLKLL  233 (271)
Q Consensus       162 ~~l~l~~~~~~~~~~~~~~~i~~~~a~-~~si~~~l~~v~~~lls~~~f~e-------~~s~~~~~G~~lvl~Gv~l~~~  233 (271)
                      ...++.++.=.++...+-..+|+.|-. ..++..-+..++..++--++.|+       +-....++|.++++.|+.+..+
T Consensus        74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~  153 (344)
T PF06379_consen   74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK  153 (344)
T ss_pred             HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence            333334444457778888999998865 46666666667777766665442       3345788999999999999987


Q ss_pred             cCC
Q 024166          234 PAD  236 (271)
Q Consensus       234 ~k~  236 (271)
                      .-.
T Consensus       154 AG~  156 (344)
T PF06379_consen  154 AGS  156 (344)
T ss_pred             HHH
Confidence            643

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.74  E-value=0.94  Score=40.77  Aligned_cols=63  Identities=22%  Similarity=0.289  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          173 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       173 ~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      +-+.+++....+.+|.+..+...+|...+.+++.++++++++..||...++...|+.+.....
T Consensus       104 lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~  166 (345)
T KOG2234|consen  104 LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS  166 (345)
T ss_pred             HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence            444678899999999999999999999999999999999999999999999999999988443

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.25  E-value=0.041  Score=49.61  Aligned_cols=74  Identities=14%  Similarity=0.216  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166          166 FEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP  239 (271)
Q Consensus       166 l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~  239 (271)
                      ..|..=+++++.++..++.++....++++...-+++..++.++-+|++|+...++.++.++|+++....+.+..
T Consensus       164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~  237 (416)
T KOG2765|consen  164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN  237 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence            33444467889999999999999999999999999999999999999999999999999999999988765543

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.16  E-value=0.083  Score=39.84  Aligned_cols=60  Identities=18%  Similarity=0.222  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHH
Q 024166          172 FIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK  231 (271)
Q Consensus       172 ~~~~~~~~~~i~~~~a~~~si~-~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~  231 (271)
                      ..|...|+..+++.+-+.+..+ ..+.=+++.+.++++.+|..+...++|+++++.|+.+.
T Consensus        52 q~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   52 QSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            3556677788888887776666 47788899999988888888999999999999998753

Many members are annotated as potential transmembrane proteins.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=94.42  E-value=0.0053  Score=52.21  Aligned_cols=206  Identities=13%  Similarity=0.201  Sum_probs=129.3

Q ss_pred             HHHHHHHhhhHhhcCcchhHHHHHhh-cchHHHHHHHHhhcccccccChhhH----HHHHHHHHHHHHHhccCCCC----
Q 024166           14 VLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTLADAQT----   84 (271)
Q Consensus        14 l~~~~~~l~~~al~~~~~~~~~i~~s-~~pi~v~~~~~ll~~l~e~~~~~~~----l~~~l~~~Gv~v~~~~~~~~----   84 (271)
                      +...+...++-|.++..++.+.-+.+ ...+-+.+++.+.  |||=.+..+.    .+++++++|+.+-++.|.++    
T Consensus        68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~--f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~  145 (288)
T COG4975          68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFV--FHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEE  145 (288)
T ss_pred             HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEE--EeccCcchhHHHHHHHHHHHHHhheEeeeecccccccc
Confidence            34566778888888887765543333 3445566889999  8987776665    57888999999888876422    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHH-hhcccHHHHHHHhhhchHHHHH
Q 024166           85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPM-LLTGELFKAWNSCSQHLYVYGV  163 (271)
Q Consensus        85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  163 (271)
                      ++++.-.|+...+.|.+-|-.|.+..+. .+    .+.+.... ....++++..... ....+.  .     .+-..|..
T Consensus       146 ~~~n~kkgi~~L~iSt~GYv~yvvl~~~-f~----v~g~saiL-PqAiGMv~~ali~~~~~~~~--~-----~~K~t~~n  212 (288)
T COG4975         146 NPSNLKKGIVILLISTLGYVGYVVLFQL-FD----VDGLSAIL-PQAIGMVIGALILGFFKMEK--R-----FNKYTWLN  212 (288)
T ss_pred             ChHhhhhheeeeeeeccceeeeEeeecc-cc----ccchhhhh-HHHHHHHHHHHHHhhccccc--c-----hHHHHHHH
Confidence            2235578888888888888777665532 22    12222222 2223333322211 111110  0     01112332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh----hhHHHHHHHHHHHHhccC
Q 024166          164 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       164 l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~----~~G~~lvl~Gv~l~~~~k  235 (271)
                      +.-+ +.=++|+..++..-++.|-.+.=.++-+.-+.+++-+.++++|+=|...    ++|+++++.|..+....|
T Consensus       213 ii~G-~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K  287 (288)
T COG4975         213 IIPG-LIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK  287 (288)
T ss_pred             HhhH-HHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence            3222 2225788888888888887776667777788999999999999887765    467788888877665544

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=93.80  E-value=0.14  Score=43.93  Aligned_cols=59  Identities=14%  Similarity=0.014  Sum_probs=53.2

Q ss_pred             HHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhc
Q 024166           19 HGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL   79 (271)
Q Consensus        19 ~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~   79 (271)
                      -.+...++..++-..+.++-|..|.+-++.++++  ++|+.+..||+++..++++..=...
T Consensus       224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~--L~e~ls~~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIF--LGETLTLIQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhcccc
Confidence            3478899999999999999999999999999999  9999999999999999988774444

>TIGR00803 nst UDP-galactose transporter

Probab=93.42  E-value=0.06  Score=45.46  Aligned_cols=65  Identities=11%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHH
Q 024166           10 KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL   76 (271)
Q Consensus        10 ~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v   76 (271)
                      .+.++......+-++.++|.+..+..+..+..++++.+++.++  ++++++..+++++.+.+.|+.+
T Consensus       157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~--f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRL--FDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHeeeEe
Confidence            3344555666778888999999999999999999999999999  9999999999999999988653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=93.04  E-value=0.34  Score=42.29  Aligned_cols=67  Identities=18%  Similarity=0.263  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166          168 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~  234 (271)
                      ..|-..|..+.+.++..++|+...+.-....+++-++|.-+++++++..||+|+..+..|+......
T Consensus        93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            3566778888899999999999999999999999999999999999999999999999999887655

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.56  E-value=0.16  Score=43.24  Aligned_cols=74  Identities=5%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166            5 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA   80 (271)
Q Consensus         5 ~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~   80 (271)
                      |+++..++++.+++.++.+.-..+-+.-+-.++..+.-+|+++.+.++  ++.+.+.+||++..+.+.|...-..+
T Consensus       241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVll--f~npls~rQwlgtvlVF~aL~~D~~~  314 (337)
T KOG1580|consen  241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLL--FNNPLSGRQWLGTVLVFSALTADVVD  314 (337)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence            567778888888888887777766555444556667888999999999  99999999999999999998876654

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=92.33  E-value=4.5  Score=37.26  Aligned_cols=7  Identities=14%  Similarity=-0.111  Sum_probs=3.1

Q ss_pred             ccccChh
Q 024166           56 RRKYPAH   62 (271)
Q Consensus        56 ~e~~~~~   62 (271)
                      .||..++
T Consensus        14 e~~~~~~   20 (378)
T PF05684_consen   14 EQKTKWG   20 (378)
T ss_pred             hcchhhh
Confidence            3444444

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=92.23  E-value=0.082  Score=47.25  Aligned_cols=71  Identities=11%  Similarity=0.034  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166            9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus         9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      ...+++++..+...+..+..++.-++++..-.+-+.+++.++++  |+++.+..+.+|.+++++|++....-.
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~i--F~~pvt~~n~~G~~iai~Gv~~Y~~~k  309 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLI--FGNPVTFLNALGYAIAILGVFLYSRAK  309 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeee--ecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence            34456777788999999999999999999988888899999999  899999999999999999999887543

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.93  E-value=1.9  Score=38.19  Aligned_cols=73  Identities=10%  Similarity=0.196  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCC
Q 024166          166 FEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK  238 (271)
Q Consensus       166 l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~  238 (271)
                      ..+++..++..+.+-.+|+++=-+..+....|-+-.++++.++++.+.++...+-..+|-.|+.++...+...
T Consensus        88 ~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~  160 (327)
T KOG1581|consen   88 LISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD  160 (327)
T ss_pred             HHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence            3446667777888899999999999999999999999999999999999999999999999999998875444

>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []

Probab=91.63  E-value=0.31  Score=38.04  Aligned_cols=12  Identities=42%  Similarity=0.667  Sum_probs=6.0

Q ss_pred             hhHHHHHHHHHH
Q 024166          218 GTGLLLIAMGIT  229 (271)
Q Consensus       218 ~~G~~lvl~Gv~  229 (271)
                      .+|..+.+.|+.
T Consensus        90 i~g~~~~~~G~~  101 (136)
T PF08507_consen   90 IIGLLLFLVGVI  101 (136)
T ss_pred             HHHHHHHHHHHH
Confidence            445555555544

In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.90  E-value=0.076  Score=45.38  Aligned_cols=133  Identities=17%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHH
Q 024166           91 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA  170 (271)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~  170 (271)
                      .+++.++.-++.||.......|    .+. .|.++..-+.+-++.+.+...++..+.        .++..+..-++.+..
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k----~GG-~p~qQ~lGtT~GALifaiiv~~~~~p~--------~T~~~~iv~~isG~~   68 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANK----FGG-KPYQQTLGTTLGALIFAIIVFLFVSPE--------LTLTIFIVGFISGAF   68 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeee----cCC-ChhHhhhhccHHHHHHHHHHheeecCc--------cchhhHHHHHHhhhH
Confidence            3566777778888887665433    211 245554443332222222211121110        122222222223333


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhCCCchhhhh----hHHHHHHHHHHHHhccCC
Q 024166          171 TFIGQVSVLSLIALFGAATTAMVTT-ARKAVTLLLSYLIFTKPLTEQHG----TGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       171 ~~~~~~~~~~~i~~~~a~~~si~~~-l~~v~~~lls~~~f~e~~s~~~~----~G~~lvl~Gv~l~~~~k~  236 (271)
                      =.+|+...++.++..|.+.+..+++ ..-+-+.+++++.|||--++.+.    +.+++++.|+++..+.++
T Consensus        69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            3478899999999999887666554 46677889999999997766554    345678888877766544

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=89.63  E-value=0.35  Score=40.09  Aligned_cols=63  Identities=11%  Similarity=0.160  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166          174 GQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD  236 (271)
Q Consensus       174 ~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~  236 (271)
                      ++..|...+++.+|+.++-+......+.-+++++++||++.....+..++.+.|+.+..+...
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN  128 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN  128 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence            456677889999999999999999999999999999999999999999999999987765543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.53  E-value=0.35  Score=42.94  Aligned_cols=126  Identities=12%  Similarity=0.130  Sum_probs=83.7

Q ss_pred             chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHH
Q 024166           88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE  167 (271)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  167 (271)
                      .+..|.++...|.++-|....++||-.+|.... ..+   +              -.|.    ..+. .++.+|.=++..
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~-~~r---a--------------~~gg----~~yl-~~~~Ww~G~ltm   74 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGAS-GLR---A--------------GEGG----YGYL-KEPLWWAGMLTM   74 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHHHhhh-ccc---c--------------cCCC----cchh-hhHHHHHHHHHH
Confidence            467899999999988888888887766553210 000   0              0111    0111 234445433333


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCcc
Q 024166          168 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI  240 (271)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~  240 (271)
                      .    +|...-|..-.-.+++-.+.++.+.-+.+.+++..+++|++++...+|.++++.|.........++.+
T Consensus        75 ~----vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~  143 (335)
T KOG2922|consen   75 I----VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE  143 (335)
T ss_pred             H----HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence            2    33344444444577788888999999999999999999999999999999999998776655444433

>PF14851 FAM176: FAM176 family

Probab=86.63  E-value=0.75  Score=36.60  Aligned_cols=13  Identities=31%  Similarity=0.580  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHh
Q 024166          220 GLLLIAMGITLKL  232 (271)
Q Consensus       220 G~~lvl~Gv~l~~  232 (271)
                      |+++.++-+..-.
T Consensus        33 GLlLtLcllV~ri   45 (153)
T PF14851_consen   33 GLLLTLCLLVIRI   45 (153)
T ss_pred             HHHHHHHHHHhhh
Confidence            4444444444333

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=86.19  E-value=3.3  Score=32.36  Aligned_cols=72  Identities=13%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhc-chHHHHHHHHh--hcccccccChhhHHHHHHHHHHHH
Q 024166            3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKST-KVLPVMVMGAF--IPGLRRKYPAHEYVSALLLVVGLI   75 (271)
Q Consensus         3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~-~pi~v~~~~~l--l~~l~e~~~~~~~l~~~l~~~Gv~   75 (271)
                      .||+.|. =+++......+...+...+.++..+.+.-+ ..+..+++..+  +..-|++++.+|.+++.++++|+.
T Consensus        63 ~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   63 VPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             CChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            4677666 466777778888888888888666654443 44445556654  111478999999999999999986

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.93  E-value=12  Score=33.33  Aligned_cols=138  Identities=4%  Similarity=-0.010  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHH
Q 024166           92 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMAT  171 (271)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~  171 (271)
                      ....++..++++.+..+.+|.++..++-...+.++.++++.+++..... =..+- .+...+-...+..|..+-+..+. 
T Consensus        13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~l-k~~~l-v~~~~l~~~~~kk~~P~~~lf~~-   89 (314)
T KOG1444|consen   13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVL-KRLGL-VNFRPLDLRTAKKWFPVSLLFVG-   89 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-HHhce-eecCCcChHHHHHHccHHHHHHH-
Confidence            3444555555555556677777666542223344557777665443221 01110 00000001122223211111111 


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166          172 FIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       172 ~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~  234 (271)
                        ....-...+++.+-....++..+.++++.+...++++..++...|.......+|...+...
T Consensus        90 --~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~  150 (314)
T KOG1444|consen   90 --MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFT  150 (314)
T ss_pred             --HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccc
Confidence              1112236678888888999999999999999999999999999999999999988776543

>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family

Probab=84.84  E-value=31  Score=31.49  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=18.5

Q ss_pred             CchHHHHHHHHHHHHH--H---Hh--hHhHHHHHHhhCCCC
Q 024166           87 NFSMIGVIMISGALIM--D---SF--LGNLQEAIFTMNPET  120 (271)
Q Consensus        87 ~~~~~G~~l~l~s~~~--~---a~--~~v~~~~~~~~~~~~  120 (271)
                      ..+...+++..+++..  .   |+  .--+.||++||+++.
T Consensus        43 PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~   83 (364)
T PF03605_consen   43 PIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKY   83 (364)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCc
Confidence            3455666665554332  1   11  112678999998764

Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=83.53  E-value=2  Score=36.43  Aligned_cols=71  Identities=13%  Similarity=0.092  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166            8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA   80 (271)
Q Consensus         8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~   80 (271)
                      .++-|+|.++-..++.+.+.-++.+++.+.-...-.+.++.+.++  |.++.++..+.++++.....++...+
T Consensus       227 m~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvf--fdap~nf~si~sillGflsg~iYava  297 (309)
T COG5070         227 MFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVF--FDAPVNFLSIFSILLGFLSGAIYAVA  297 (309)
T ss_pred             HHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhh--cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            344455666777888999999999999999888888888889888  88999988888888777766666554

>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1

Probab=81.97  E-value=29  Score=31.44  Aligned_cols=35  Identities=26%  Similarity=0.155  Sum_probs=18.4

Q ss_pred             HHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166          200 VTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP  234 (271)
Q Consensus       200 ~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~  234 (271)
                      ...+.|+++--..+.........+++.-..+|...
T Consensus       213 ~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~  247 (340)
T PF12794_consen  213 VLALLGYYYTALQLLERLILSLYLLLGWLLVYQLI  247 (340)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555555566666666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 51/318 (16%), Positives = 87/318 (27%), Gaps = 88/318 (27%)

Query: 1   MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQL--MFKSTKVLPVMVMGAFIPGLRRK 58
           +M+P KT  +            + S+    Y  Q   ++   +V         +    R 
Sbjct: 94  LMSPIKTEQR------------QPSMMTRMYIEQRDRLYNDNQVFAKY----NVS---RL 134

Query: 59  YPAHEYVSAL--------LLVVG--------LILFTLADAQTSPNFSMIGV--IMISGAL 100
            P  +   AL        +L+ G        + L      +         +  + +    
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCN 193

Query: 101 IMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNS--CSQHL 158
             ++ L  LQ+ ++ ++P  T            + + I          +A          
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSR----SDHSSNIKLRI-------HSIQAELRRLLKSKP 242

Query: 159 YVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFT-------- 210
           Y   +LV          V        F  +   ++TT  K VT  LS    T        
Sbjct: 243 YENCLLVLL-------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 211 KPLTEQHGTGLLLIAMGITLKLLPADDKPI-------------KRTATSSF--KVNIRKL 255
             LT      LLL  +    + LP +                    AT      VN  KL
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 256 -----SFSEREEADEEKR 268
                S     E  E ++
Sbjct: 356 TTIIESSLNVLEPAEYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.98
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.52
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.39
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.2

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.98  E-value=8.7e-10  Score=85.34  Aligned_cols=71  Identities=17%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          165 VFEAMATFIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       165 ~l~~~~~~~~~~~~~~~i~~~~a~~~si~-~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      ++..+++++++.++.+++++.++..+..+ ..+.|++++++|+++|||++|+.+++|+++++.|+++....+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34456778999999999999999988887 899999999999999999999999999999999999887543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.52  E-value=9.2e-07  Score=65.74  Aligned_cols=70  Identities=16%  Similarity=0.144  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166          166 FEAMATFIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA  235 (271)
Q Consensus       166 l~~~~~~~~~~~~~~~i~~~~a~~~si~-~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k  235 (271)
                      +..++..+++.++.+++|+.+...+..+ ..+.|+.+.++++++|||++|+.+++|+.+++.|+......+
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3445667888899999999999998777 899999999999999999999999999999999999887543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.39  E-value=1.4e-06  Score=64.82  Aligned_cols=72  Identities=11%  Similarity=0.187  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166            8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus         8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      .....+++.++..+...++++.|.+.+..+ ....|+.++++++++  +||++++.+++++.++++|+.++...+
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~--~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            334444667788899999999999998877 899999999999999  999999999999999999999987654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.20  E-value=1.6e-06  Score=66.90  Aligned_cols=70  Identities=10%  Similarity=0.185  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166           10 KLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD   81 (271)
Q Consensus        10 ~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~   81 (271)
                      .-.+++.++..+.+.++++++.+.+..+ ....|++++++++++  ++|+++..+++|++++++|+.++...+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~--lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3345677889999999999999977777 899999999999999  999999999999999999999987644

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00