Citrus Sinensis ID: 024168

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFCGQSSEAESTRNARDGHEDMKSTQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEEccccccccccccccccccEEEcccEEEEEEcccccccccccccEEEEEEEccccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccEEcccccccccccccccccccccccccccccccccEEEccccccHcHccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEEEEcccccccccccccEEcccEEccccEEEEEHHHHHHcHHHHccccEEEEEEEEccccEcccccEEEEcccccccHHcc
Coil and Loop (DISEMBL)
masyslgasnikipkgnlgrarvgdlqprsdvrkwmgrkpfqyaglamsqPLEKAFTVFCgqsseaestrnardghedmkstqlipdssevESLVTDICNTTSVAEFELKLDGFRLYVtrdiagdsipplppsspapvtvnkpadrpdsngsvptsslaitkpvsssggiqTLLDKAAdeglvilespkvgyfrrsrtikgkrappsckekqtvrEGQVLCYIEQlggeipiesdiAGEVIKILRkdgdpigygdplivilpsfpgikllq
Flexible Loop (DISEMBL)
masyslgasnikipkgnlgrarvgdlQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFCGQSSEAEStrnardghedmkstqlipdsseveSLVTDICNTTSVAEFELKLDGFRLYVTRDIAGdsipplppsspaPVTVNKPADRPDSNGSVPTsslaitkpvsssgGIQTLLDKAAdeglvilespkvgyfrrsrtikgkrappsckekqtvreGQVLCYIEQLggeipiesdIAGEVIKILRKDGDPIGYGDPlivilpsfpgikllq
Low Complexity Region (SEG)
MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFCGQSSEAESTRNARDGHEDMKSTQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDsipplppsspapVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ
Disordered region (IsUnstruct)
********************************RKWMGRKPFQYAGLAMSQPLEKAFTVFC********************************SLVTDICNTTSVAEFELKLDGFRLYVTRDIA************************************************TLLDKAADEGLVILESPKVGYFRR******************VREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIK***
Disordered Region (DISOPRED)
****************************************************************************************SEVESLVTDICNTTSVAEFELKLDGFRLYVTRDI***********************************************************LVILESPKVGYFRRSR*********SCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLL*
Disordered Region (DISEMBL)
MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFCG**********************LIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPS**********************SSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTI**************VREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ
Disordered Region (DISPRO)
***YSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGL**S**********************************LIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDI*********************************************************EGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFCGQSSEAESTRNARDGHEDMKSTQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q06881	182	Biotin carboxyl carrier p	yes	no	0.608	0.906	0.312	6e-10
Q42533	280	Biotin carboxyl carrier p	no	no	0.287	0.278	0.382	2e-06
Q9LLC1	255	Biotin carboxyl carrier p	no	no	0.276	0.294	0.371	3e-06
Q42783	262	Biotin carboxyl carrier p	no	no	0.309	0.320	0.344	7e-05
P0ABE1	156	Biotin carboxyl carrier p	yes	no	0.542	0.942	0.253	0.0001
P0ABD8	156	Biotin carboxyl carrier p	N/A	no	0.542	0.942	0.253	0.0001
P0ABD9	156	Biotin carboxyl carrier p	yes	no	0.542	0.942	0.253	0.0001
P0ABE0	156	Biotin carboxyl carrier p	N/A	no	0.542	0.942	0.253	0.0001
P49786	159	Biotin carboxyl carrier p	yes	no	0.291	0.496	0.317	0.0002
P43874	155	Biotin carboxyl carrier p	yes	no	0.273	0.477	0.376	0.0007

>sp|Q06881|BCCP_NOSS1 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accB PE=1 SV=2

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 24/189 (12%)

Query: 87  DSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDI-AGDSIPPLP------------PS 133
           D +E+  L+T I  T  +AE  LK D F L V + +   +S+ P+             PS
Sbjct: 4   DFNEIRQLLTTIAQT-DIAEVTLKSDDFELTVRKAVGVNNSVVPVVTAPLSGVVGSGLPS 62

Query: 134 SPAPVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYF 193
           +   V    P+  P+     P +S A    V+SSG       K  D+ L  + SP VG F
Sbjct: 63  AIPIVAHAAPSPSPE-----PGTSRAADHAVTSSGSQPGA--KIIDQKLAEVASPMVGTF 115

Query: 194 RRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGY 253
            R+    G+       ++  +R+GQ +C IE +     IE+D++G+VI+IL ++G+P+ Y
Sbjct: 116 YRAPA-PGEAVFVEVGDR--IRQGQTVCIIEAMKLMNEIEADVSGQVIEILVQNGEPVEY 172

Query: 254 GDPLIVILP 262
             PL+ I P
Sbjct: 173 NQPLMRIKP 181

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q42533|BCCP1_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVI 241
           L  ++SP  G F RS        PP  K    V++GQVLC +E +     IESD  G V+
Sbjct: 203 LPTVKSPMAGTFYRS---PAPGEPPFIKVGDKVQKGQVLCIVEAMKLMNEIESDHTGTVV 259

Query: 242 KILRKDGDPIGYGDPLIVILP 262
            I+ +DG P+    PL V+ P
Sbjct: 260 DIVAEDGKPVSLDTPLFVVQP 280

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LLC1|BCCP2_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 185 LESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL 244
           L+SP  G F RS    G   PP  K    V++GQ++C IE +     IE++ +G ++++L
Sbjct: 181 LKSPMAGTFYRS---PGPGEPPFVKVGDKVQKGQIVCIIEAMKLMNEIEAEKSGTIMELL 237

Query: 245 RKDGDPIGYGDPLIVILP 262
            +DG P+    PL VI P
Sbjct: 238 AEDGKPVSVDTPLFVIAP 255

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42783|BCCP_SOYBN Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic OS=Glycine max GN=ACCB-1 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 176 KAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESD 235
           K+A   L  L+SP  G F RS        P   K    V++GQV+C IE +     IE+D
Sbjct: 179 KSAKSSLPPLKSPMAGTFYRS---PAPGEPSFVKVGDKVKKGQVVCIIEAMKLMNEIEAD 235

Query: 236 IAGEVIKILRKDGDPIGYGDPLIVILP 262
            +G +++I+ +D   +    PL VI P
Sbjct: 236 QSGTIVEIVAEDAKSVSVDTPLFVIQP 262

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Glycine max (taxid: 3847)

>sp|P0ABE1|BCCP_SHIFL Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Shigella flexneri GN=accB PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)

Query: 95  VTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVP 154
           + ++   + ++E E+      + ++R     S P +  +  AP+ + +PA    SN + P
Sbjct: 9   LIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPM-MQQPAQ---SNAAAP 64

Query: 155 TSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTV 214
            +  ++  P             AA+    I+ SP VG F R+ +   K      +  Q V
Sbjct: 65  ATVPSMEAPA------------AAEISGHIVRSPMVGTFYRTPSPDAKA---FIEVGQKV 109

Query: 215 REGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
             G  LC +E +     IE+D +G V  IL + G P+ + +PL+VI
Sbjct: 110 NVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Shigella flexneri (taxid: 623)

>sp|P0ABD8|BCCP_ECOLI Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli (strain K12) GN=accB PE=1 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)

Query: 95  VTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVP 154
           + ++   + ++E E+      + ++R     S P +  +  AP+ + +PA    SN + P
Sbjct: 9   LIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPM-MQQPAQ---SNAAAP 64

Query: 155 TSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTV 214
            +  ++  P             AA+    I+ SP VG F R+ +   K      +  Q V
Sbjct: 65  ATVPSMEAPA------------AAEISGHIVRSPMVGTFYRTPSPDAKA---FIEVGQKV 109

Query: 215 REGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
             G  LC +E +     IE+D +G V  IL + G P+ + +PL+VI
Sbjct: 110 NVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0ABD9|BCCP_ECOL6 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=accB PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)

Query: 95  VTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVP 154
           + ++   + ++E E+      + ++R     S P +  +  AP+ + +PA    SN + P
Sbjct: 9   LIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPM-MQQPAQ---SNAAAP 64

Query: 155 TSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTV 214
            +  ++  P             AA+    I+ SP VG F R+ +   K      +  Q V
Sbjct: 65  ATVPSMEAPA------------AAEISGHIVRSPMVGTFYRTPSPDAKA---FIEVGQKV 109

Query: 215 REGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
             G  LC +E +     IE+D +G V  IL + G P+ + +PL+VI
Sbjct: 110 NVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P0ABE0|BCCP_ECO57 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O157:H7 GN=accB PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)

Query: 95  VTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVP 154
           + ++   + ++E E+      + ++R     S P +  +  AP+ + +PA    SN + P
Sbjct: 9   LIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPM-MQQPAQ---SNAAAP 64

Query: 155 TSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTV 214
            +  ++  P             AA+    I+ SP VG F R+ +   K      +  Q V
Sbjct: 65  ATVPSMEAPA------------AAEISGHIVRSPMVGTFYRTPSPDAKA---FIEVGQKV 109

Query: 215 REGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
             G  LC +E +     IE+D +G V  IL + G P+ + +PL+VI
Sbjct: 110 NVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Escherichia coli O157:H7 (taxid: 83334)

>sp|P49786|BCCP_BACSU Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Bacillus subtilis (strain 168) GN=accB PE=3 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 179 DEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAG 238
           DE L  + SP VG F  S +     A P       V E  V+C +E +     IE+++ G
Sbjct: 78  DENLHKITSPMVGTFYASSS---PEAGPYVTAGSKVNENTVVCIVEAMKLFNEIEAEVKG 134

Query: 239 EVIKILRKDGDPIGYGDPLIVI 260
           E++++L ++G  + YG PL ++
Sbjct: 135 EIVEVLVENGQLVEYGQPLFLV 156

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P43874|BCCP_HAEIN Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=accB PE=1 SV=1

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
           ++ SP VG F RS +     A    +  Q+V+ G  LC +E +     IE+D AG V  I
Sbjct: 81  LVRSPMVGTFYRSPS---PEAKAFVEVGQSVKVGDALCIVEAMKMMNRIEADKAGVVKAI 137

Query: 244 LRKDGDPIGYGDPLIVI 260
           L  DG+ + + +PLIVI
Sbjct: 138 LINDGNAVEFDEPLIVI 154

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
225442857	274	PREDICTED: biotin carboxyl carrier prote	0.996	0.985	0.625	9e-81
124359176	282	Biotin/lipoyl attachment [Medicago trunc	0.977	0.939	0.555	4e-77
356550600	298	PREDICTED: biotin carboxyl carrier prote	0.981	0.892	0.553	2e-76
388522641	277	unknown [Medicago truncatula]	0.977	0.956	0.547	7e-76
357455143	284	Biotin carboxyl carrier protein of acety	0.977	0.933	0.551	1e-75
356555612	269	PREDICTED: biotin carboxyl carrier prote	0.944	0.951	0.535	8e-73
15232664	263	putative acetyl-CoA carboxylase biotin-c	0.959	0.988	0.532	5e-70
297830152	263	hypothetical protein ARALYDRAFT_479023 [	0.959	0.988	0.521	8e-70
224058691	206	predicted protein [Populus trichocarpa]	0.701	0.922	0.707	9e-70
449436116	277	PREDICTED: uncharacterized protein LOC10	0.996	0.974	0.539	2e-69

>gi|225442857|ref|XP_002285378.1| PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vitis vinifera] gi|297743403|emb|CBI36270.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 172/275 (62%), Positives = 204/275 (74%), Gaps = 5/275 (1%)

Query: 1   MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFC 60
           MAS  LGA +IKI   +L R R+G LQ R  +R      P   +GL +SQ  +KA  +  
Sbjct: 1   MASCGLGAPSIKISNLDLVRTRLGVLQSRFSIRTSTAWTPLNNSGLVISQRSQKAIILCR 60

Query: 61  GQSSEAESTRNARDGHEDMKST----QLIPDSSEVESLVTDICNTTSVAEFELKLDGFRL 116
           G SSEAES  N  DG E+ KS+    QL P++ EVESL+++IC+TTS+AEFELKL GFRL
Sbjct: 61  GSSSEAESAVNLEDGSEETKSSGLTSQLTPNAYEVESLLSEICDTTSIAEFELKLGGFRL 120

Query: 117 YVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDK 176
           Y+ RD+AG  I P PP S  PVTV+   + P  NGS   SSL I+K     G  QTLLD+
Sbjct: 121 YMMRDLAGK-IEPTPPPSSTPVTVSLNDEAPKLNGSASMSSLPISKSALLLGQSQTLLDR 179

Query: 177 AADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDI 236
           AADEGL+IL+SPKVG+FRRSRTIKGKRAPPSCKEKQ V+EGQVLCYIEQLGGEIPIESD+
Sbjct: 180 AADEGLMILQSPKVGFFRRSRTIKGKRAPPSCKEKQIVKEGQVLCYIEQLGGEIPIESDV 239

Query: 237 AGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
           +GEVIKILR+DG+P+GYGD LI ILPSFPGIK LQ
Sbjct: 240 SGEVIKILREDGEPVGYGDALIAILPSFPGIKKLQ 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359176|gb|ABD28385.2| Biotin/lipoyl attachment [Medicago truncatula]

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 151/272 (55%), Positives = 193/272 (70%), Gaps = 7/272 (2%)

Query: 5   SLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFCGQSS 64
           SLG  N+K+   + G+ R  +       R W+ RK  QYA L  S+   ++ T    QS+
Sbjct: 12  SLGTQNVKVLNLHFGQER-AEFSQHFGTRSWISRKSLQYARLVASKQTVRSLTPSNDQSA 70

Query: 65  EAESTRNARDGHEDMKST----QLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTR 120
           E +S   + DG E+ KS+    QL P+ ++VE L+T++C+T S+ E ELKLDGF L V R
Sbjct: 71  EIQSVSRSEDGSEESKSSGLTNQLFPNFNDVEFLLTNLCDTASIGELELKLDGFHLRVVR 130

Query: 121 DIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPT-SSLAITKPVSSSGGIQTLLDKAAD 179
           D+   S   LPPS PAPV++N PA+ P  NGSV T ++LAI+KP  SS  I+  L+KAAD
Sbjct: 131 DLTEKS-KTLPPSIPAPVSINTPAEAPKPNGSVSTLTTLAISKPAPSSLSIEGFLEKAAD 189

Query: 180 EGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGE 239
           EGLVI+ SP VG FRRSRTIKGKRAPPSC+E Q V EG+V+CYIEQLGG++P+ESD++GE
Sbjct: 190 EGLVIIHSPTVGIFRRSRTIKGKRAPPSCQEMQNVEEGKVICYIEQLGGQLPVESDVSGE 249

Query: 240 VIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
           VIKILR+DGDP+GYGD LI ILPSFPGIK LQ
Sbjct: 250 VIKILREDGDPVGYGDTLIAILPSFPGIKKLQ 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550600|ref|XP_003543673.1| PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic-like [Glycine max]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/278 (55%), Positives = 199/278 (71%), Gaps = 12/278 (4%)

Query: 1   MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFC 60
           MAS S+G  NIK+   + G  +VG L  +   R W+ R   QY  L MS+   +      
Sbjct: 26  MASCSIGTPNIKVLNLHFGGKKVG-LSRQFGTRSWISR--LQYTSLVMSRQTVRFLASSN 82

Query: 61  GQSSEAESTRNARDGHEDMKST----QLIPDSSEVESLVTDICNTTSVAEFELKLDGFRL 116
           G S+E +    + +G E+++S+    +LIP+ +EVE L+T +C+T+S+ E +LKL GF L
Sbjct: 83  GPSTEIQFAARS-EGSEEIRSSGLTSELIPNINEVEFLLTKLCDTSSIGELDLKLAGFHL 141

Query: 117 YVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVS---SSGGIQTL 173
           +V RD+  +    LPP  PA V++    + P +NGSVPT+SLA++KPV    SSG IQ  
Sbjct: 142 HVVRDLT-EKTKTLPPLIPASVSIINVTETPKTNGSVPTTSLAVSKPVDPVPSSGSIQRF 200

Query: 174 LDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIE 233
           LDKAADEGLVI++SPKVG+FRRSRTIKGKRAPPSCKEKQ V EGQV+CYIEQLGGE+PIE
Sbjct: 201 LDKAADEGLVIIQSPKVGFFRRSRTIKGKRAPPSCKEKQNVEEGQVICYIEQLGGELPIE 260

Query: 234 SDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
           SD++GEVIKILR+DGDP+GYGD L+ ILPSFPGIK LQ
Sbjct: 261 SDVSGEVIKILRQDGDPVGYGDALVAILPSFPGIKKLQ 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522641|gb|AFK49382.1| unknown [Medicago truncatula]

 Score =  290 bits (741), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 149/272 (54%), Positives = 191/272 (70%), Gaps = 7/272 (2%)

Query: 5   SLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFCGQSS 64
           SLG  N+K+   + G+ R  +       R W+ RK  QYA L  S+   ++ T    QS+
Sbjct: 7   SLGTQNVKVLNLHFGQER-AEFSQHFGTRSWISRKSLQYARLVASKQTVRSLTPSNDQSA 65

Query: 65  EAESTRNARDGHEDMKST----QLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTR 120
           E +S   + DG E+ KS+    QL P+ ++VE L+T++C+T S+ E ELKLDGF L V R
Sbjct: 66  EIQSVSRSEDGSEESKSSGLTNQLFPNFNDVEFLLTNLCDTASIGELELKLDGFHLRVVR 125

Query: 121 DIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPT-SSLAITKPVSSSGGIQTLLDKAAD 179
           D+   S   LPPS  APV++N PA+ P  NGSV T ++LAI+KP  SS   +  L+KAAD
Sbjct: 126 DLTEKS-KTLPPSISAPVSINTPAEAPKPNGSVSTLTTLAISKPAPSSLSFEGFLEKAAD 184

Query: 180 EGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGE 239
           EGLVI+ SP VG FRRSRTIKGKRAPPSC+E Q V EG+V+CYIEQLGG++P+ESD++GE
Sbjct: 185 EGLVIIHSPTVGIFRRSRTIKGKRAPPSCQEMQNVEEGKVICYIEQLGGQLPVESDVSGE 244

Query: 240 VIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
           VIKILR+DGDP+GYGD LI ILPSFPGIK LQ
Sbjct: 245 VIKILREDGDPVGYGDTLIAILPSFPGIKKLQ 276

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455143|ref|XP_003597852.1| Biotin carboxyl carrier protein of acetyl-CoA carboxylase [Medicago truncatula] gi|355486900|gb|AES68103.1| Biotin carboxyl carrier protein of acetyl-CoA carboxylase [Medicago truncatula]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/274 (55%), Positives = 193/274 (70%), Gaps = 9/274 (3%)

Query: 5   SLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFCGQSS 64
           SLG  N+K+   + G+ R  +       R W+ RK  QYA L  S+   ++ T    QS+
Sbjct: 12  SLGTQNVKVLNLHFGQER-AEFSQHFGTRSWISRKSLQYARLVASKQTVRSLTPSNDQSA 70

Query: 65  EAESTRNARDGHEDMKST----QLIPDSSEV--ESLVTDICNTTSVAEFELKLDGFRLYV 118
           E +S   + DG E+ KS+    QL P+ ++V  E L+T++C+T S+ E ELKLDGF L V
Sbjct: 71  EIQSVSRSEDGSEESKSSGLTNQLFPNFNDVSVEFLLTNLCDTASIGELELKLDGFHLRV 130

Query: 119 TRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPT-SSLAITKPVSSSGGIQTLLDKA 177
            RD+   S   LPPS PAPV++N PA+ P  NGSV T ++LAI+KP  SS  I+  L+KA
Sbjct: 131 VRDLTEKS-KTLPPSIPAPVSINTPAEAPKPNGSVSTLTTLAISKPAPSSLSIEGFLEKA 189

Query: 178 ADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIA 237
           ADEGLVI+ SP VG FRRSRTIKGKRAPPSC+E Q V EG+V+CYIEQLGG++P+ESD++
Sbjct: 190 ADEGLVIIHSPTVGIFRRSRTIKGKRAPPSCQEMQNVEEGKVICYIEQLGGQLPVESDVS 249

Query: 238 GEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
           GEVIKILR+DGDP+GYGD LI ILPSFPGIK LQ
Sbjct: 250 GEVIKILREDGDPVGYGDTLIAILPSFPGIKKLQ 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555612|ref|XP_003546124.1| PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic-like [Glycine max]

 Score =  279 bits (714), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 152/284 (53%), Positives = 195/284 (68%), Gaps = 28/284 (9%)

Query: 1   MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQ------PLEK 54
           MAS S+G  NIK    + G  +VG L  +   R W+ ++  QY  L MS+      P E 
Sbjct: 1   MASCSIGTPNIKALNLHFGGKKVG-LSQQFGTRSWISKQSLQYTSLVMSRQKVRFSPTEI 59

Query: 55  AFTVFCGQSSEAESTRNARDGHEDMKST----QLIPDSSEVESLVTDICNTTSVAEFELK 110
            F            TR+  +G E++KS+    +LIP+  EVE L+T +C+T+S+ E +LK
Sbjct: 60  QFV-----------TRS--EGSEEVKSSGLTSELIPNLIEVEFLLTKLCDTSSIGELDLK 106

Query: 111 LDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVS---SS 167
           L GF L+V RD+  +    LPP  PA  ++    + P +NGSV T+SLA++KPV    SS
Sbjct: 107 LAGFHLHVVRDLT-EKTKTLPPPIPASESIINVTETPKTNGSVSTTSLAVSKPVDPIPSS 165

Query: 168 GGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227
           G IQ  L+KAADEGLVI++SPKVG+FRRSRTIKG+RAPPSCKEKQ V EGQV+CYIEQLG
Sbjct: 166 GSIQRFLNKAADEGLVIIQSPKVGFFRRSRTIKGRRAPPSCKEKQNVEEGQVICYIEQLG 225

Query: 228 GEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
           GE+PIESD++GEVIKIL+KDGDP+GYGD L+ ILPSFPGIK LQ
Sbjct: 226 GELPIESDVSGEVIKILQKDGDPVGYGDALVAILPSFPGIKKLQ 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232664|ref|NP_188190.1| putative acetyl-CoA carboxylase biotin-containing subunit [Arabidopsis thaliana] gi|23306376|gb|AAN17415.1| putative acetyl-CoA carboxylase biotin-containing subunit [Arabidopsis thaliana] gi|24899719|gb|AAN65074.1| putative acetyl-CoA carboxylase biotin-containing subunit [Arabidopsis thaliana] gi|332642194|gb|AEE75715.1| putative acetyl-CoA carboxylase biotin-containing subunit [Arabidopsis thaliana]

 Score =  270 bits (690), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 146/274 (53%), Positives = 185/274 (67%), Gaps = 14/274 (5%)

Query: 1   MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFC 60
           MAS SLG   IKI   +L R R G L    + R  + ++P +Y  L  +    KA  V  
Sbjct: 1   MASCSLGVPKIKISAVDLSRVRSGSLLIPYNQRSLLRQRPVKYLSLKTTFGSVKAVQVST 60

Query: 61  GQSSEAESTRNARDGHEDMKS---TQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLY 117
             ++E  +T   +D  E   S    QL+P  SEVE+LVT+IC+++S+AEFELKL GFRLY
Sbjct: 61  VPTAETSATIEVKDSKEIKSSRLNAQLVPKPSEVEALVTEICDSSSIAEFELKLGGFRLY 120

Query: 118 VTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKA 177
           V R+IA +S    PP +PA    N   + P+SNGS  ++SLAI+KP SS          A
Sbjct: 121 VARNIADNS-SLQPPPTPAVTASNATTESPESNGSASSTSLAISKPASS----------A 169

Query: 178 ADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIA 237
           AD+GL+IL+SPKVG+FRRS+TIKGKR P SCKEK  V+EGQ+LCYIEQLGG+ PIESD+ 
Sbjct: 170 ADQGLMILQSPKVGFFRRSKTIKGKRLPSSCKEKDQVKEGQILCYIEQLGGQFPIESDVT 229

Query: 238 GEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
           GEV+KILR+DG+P+GY D LI ILPSFPGIK LQ
Sbjct: 230 GEVVKILREDGEPVGYNDALISILPSFPGIKKLQ 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830152|ref|XP_002882958.1| hypothetical protein ARALYDRAFT_479023 [Arabidopsis lyrata subsp. lyrata] gi|297328798|gb|EFH59217.1| hypothetical protein ARALYDRAFT_479023 [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (688), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 143/274 (52%), Positives = 184/274 (67%), Gaps = 14/274 (5%)

Query: 1   MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFC 60
           MAS SLG   IKI   +L R R        + +  +G++P +Y  L  +    KA  +  
Sbjct: 1   MASCSLGVPKIKISAVDLSRVRSASFLIPYNQKSLLGQRPVKYLSLRTTFGSVKAVQLST 60

Query: 61  GQSSEAESTRNARDGHEDMKS---TQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLY 117
             ++E  +T   +D  E   S    QL+P  SEVE+LVT+IC+++S+AEFELKL GFRLY
Sbjct: 61  VPAAETSATIEVKDSEETKSSRLNAQLVPKPSEVEALVTEICDSSSIAEFELKLGGFRLY 120

Query: 118 VTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKA 177
           V R+IA +S  P PP +PA    N   + PD NGS  ++SLAI+KP SS          A
Sbjct: 121 VARNIADNS-SPQPPPTPAVAASNATTESPDLNGSASSTSLAISKPASS----------A 169

Query: 178 ADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIA 237
           AD+GL+IL+SPKVG+FRRS+TIKGKR P SCKEK  V+EGQ+LCYIEQLGG+ PIE+D+ 
Sbjct: 170 ADQGLMILQSPKVGFFRRSKTIKGKRLPSSCKEKDLVKEGQILCYIEQLGGQFPIEADVT 229

Query: 238 GEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
           GEV+KILR+DG+P+GY D LI ILPSFPGIK LQ
Sbjct: 230 GEVVKILREDGEPVGYNDALISILPSFPGIKKLQ 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058691|ref|XP_002299605.1| predicted protein [Populus trichocarpa] gi|222846863|gb|EEE84410.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (688), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 138/195 (70%), Positives = 162/195 (83%), Gaps = 5/195 (2%)

Query: 81  STQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIA---GDSIPPLP-PSSPA 136
           ++QLIP+SSE+ESLVT+ICNTTSVAE ELKL GFRLYV RD+     D+  PLP P +  
Sbjct: 13  TSQLIPNSSEIESLVTEICNTTSVAELELKLGGFRLYVRRDLTEKNKDTHQPLPAPPASL 72

Query: 137 PVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRS 196
            VTV    D  D NGSV TS LAI+K   SSGGI + LD+AADEGL+IL+SP+VG+FRRS
Sbjct: 73  AVTVKTTTDASDLNGSVSTS-LAISKQEPSSGGIISFLDRAADEGLMILQSPRVGFFRRS 131

Query: 197 RTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDP 256
           RTIKGKRAPPSCKEKQ V+EGQVLC+IEQLGGE+PIE+DI+GEVI+ILR+DG+P+GYGD 
Sbjct: 132 RTIKGKRAPPSCKEKQIVKEGQVLCFIEQLGGELPIETDISGEVIRILREDGEPVGYGDA 191

Query: 257 LIVILPSFPGIKLLQ 271
           LI ILPSFPGIK LQ
Sbjct: 192 LIAILPSFPGIKKLQ 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436116|ref|XP_004135840.1| PREDICTED: uncharacterized protein LOC101204920 [Cucumis sativus] gi|449491004|ref|XP_004158771.1| PREDICTED: uncharacterized LOC101204920 [Cucumis sativus]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/278 (53%), Positives = 194/278 (69%), Gaps = 8/278 (2%)

Query: 1   MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFC 60
           MA  SL A++IK  K ++ R RV  LQP S +R W+GR P QY+ L +S   +KA     
Sbjct: 1   MAFCSLRAADIKFSKLDIRRGRVSTLQPCS-LRNWIGRTPHQYSSLVISHSSQKALHACS 59

Query: 61  GQSSEAESTRNARDGHEDMK----STQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRL 116
           G S +A++   +  G E++K     +QLIP+  EVE+L+T++C+T+S+AEFELKL GF L
Sbjct: 60  GASPKAQTVIKSETGSEEIKPSSLGSQLIPNFHEVETLLTNVCDTSSIAEFELKLSGFNL 119

Query: 117 YVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKP--VSSS-GGIQTL 173
            + R +   ++P  P  +PAP   N  +   DSNG V T+SLA+ KP  VSSS  GI   
Sbjct: 120 RMVRSLKSKNLPLPPVPAPAPDIQNTSSIPSDSNGLVKTTSLALVKPEPVSSSPRGISRY 179

Query: 174 LDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIE 233
           ++KA D G+ IL SP VG FRRSRTIKGKRAPPSC E Q VREGQVLCYIEQLGG+IP++
Sbjct: 180 VEKARDGGVTILSSPNVGVFRRSRTIKGKRAPPSCAEDQVVREGQVLCYIEQLGGQIPVK 239

Query: 234 SDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
           SD  GE++KILRKDG+P+GYGD LI +LPSFPGIK L+
Sbjct: 240 SDTPGEILKILRKDGEPVGYGDALIAVLPSFPGIKKLR 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2093237	263	AT3G15690 [Arabidopsis thalian	0.959	0.988	0.518	2.6e-63
TAIR|locus:2035149	274	AT1G52670 [Arabidopsis thalian	0.996	0.985	0.498	1.8e-62
TAIR|locus:2078401	281	AT3G56130 [Arabidopsis thalian	0.749	0.722	0.370	1.6e-31
TIGR_CMR|CHY_1999	617	CHY_1999 "oxaloacetate decarbo	0.424	0.186	0.327	4.3e-07
TAIR|locus:2171307	280	CAC1 "chloroplastic acetylcoen	0.302	0.292	0.388	2.4e-06
TAIR|locus:2180927	255	BCCP2 "biotin carboxyl carrier	0.870	0.925	0.247	3.2e-06
TIGR_CMR|GSU_2020	158	GSU_2020 "acetyl-CoA carboxyla	0.369	0.632	0.285	5.7e-06
TIGR_CMR|BA_4409	164	BA_4409 "acetyl-CoA carboxylas	0.579	0.957	0.251	2.5e-05
UNIPROTKB|Q9KV61	196	VC_0296 "Acetyl-CoA carboxylas	0.424	0.586	0.3	0.00033
TIGR_CMR|VC_0296	196	VC_0296 "acetyl-CoA carboxylas	0.424	0.586	0.3	0.00033

TAIR|locus:2093237 AT3G15690 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 142/274 (51%), Positives = 179/274 (65%)

Query:     1 MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFC 60
             MAS SLG   IKI   +L R R G L    + R  + ++P +Y  L  +    KA  V  
Sbjct:     1 MASCSLGVPKIKISAVDLSRVRSGSLLIPYNQRSLLRQRPVKYLSLKTTFGSVKAVQVST 60

Query:    61 GQSSEAESTRNARDGHEDMKS---TQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLY 117
               ++E  +T   +D  E   S    QL+P  SEVE+LVT+IC+++S+AEFELKL GFRLY
Sbjct:    61 VPTAETSATIEVKDSKEIKSSRLNAQLVPKPSEVEALVTEICDSSSIAEFELKLGGFRLY 120

Query:   118 VTRDIAGDXXXXXXXXXXXXVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKA 177
             V R+IA D               N   + P+SNGS  ++SLAI+KP SS          A
Sbjct:   121 VARNIA-DNSSLQPPPTPAVTASNATTESPESNGSASSTSLAISKPASS----------A 169

Query:   178 ADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIA 237
             AD+GL+IL+SPKVG+FRRS+TIKGKR P SCKEK  V+EGQ+LCYIEQLGG+ PIESD+ 
Sbjct:   170 ADQGLMILQSPKVGFFRRSKTIKGKRLPSSCKEKDQVKEGQILCYIEQLGGQFPIESDVT 229

Query:   238 GEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
             GEV+KILR+DG+P+GY D LI ILPSFPGIK LQ
Sbjct:   230 GEVVKILREDGEPVGYNDALISILPSFPGIKKLQ 263

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2035149 AT1G52670 [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 137/275 (49%), Positives = 182/275 (66%)

Query:     1 MASYSLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFC 60
             M S SLGA  ++I   N  R R G+L   ++ R ++ + P +Y  L  +    KA  +  
Sbjct:     1 MNSCSLGAPKVRIFATNFSRLRCGNLLIPNNQRLFVDQSPMKYLSLRTTLRSVKAIQLST 60

Query:    61 GQSSEAESTRNARDGHEDMKS---TQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLY 117
                +E E+  + +D  E   +   T L+P SSEVE+L+++I +++S+AEFELKL GFRLY
Sbjct:    61 VPPAETEAIADVKDSDETKSTVVNTHLMPKSSEVEALISEITDSSSIAEFELKLGGFRLY 120

Query:   118 VTRDIAGDXXXXXXXXXXXXVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGI-QTLLDK 176
             V R +  D            V  +   +   +NGS  +SSLAITK  SSS    QTL +K
Sbjct:   121 VARKLT-DESSPPPQQIQPVVAASATPEGVHTNGSATSSSLAITKTSSSSADRPQTLANK 179

Query:   177 AADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDI 236
             AAD+GLVIL+SP VGYFRRS+TIKGKR P  CKEK  V+EGQVLCYIEQLGG+IP+ESD+
Sbjct:   180 AADQGLVILQSPTVGYFRRSKTIKGKRTPTICKEKDIVKEGQVLCYIEQLGGQIPVESDV 239

Query:   237 AGEVIKILRKDGDPIGYGDPLIVILPSFPGIKLLQ 271
             +GE++KILR+DG+P+GY D LI +LPSFPGIK LQ
Sbjct:   240 SGEIVKILREDGEPVGYNDALITVLPSFPGIKKLQ 274

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2078401 AT3G56130 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 80/216 (37%), Positives = 121/216 (56%)

Query:    64 SEAESTRNARDGHEDMKSTQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIA 123
             S+  S  +  DG    K+ + I    EVE+LV ++C+ T VA  +LK+  F + + R I 
Sbjct:    68 SDGSSDASVSDGK---KTVRRITFPKEVEALVHEMCDETEVAVLQLKVGDFEMNLKRKIG 124

Query:   124 GDXXXXXXXXXXXXVTV---NKPADRPDSNGSVPTSSLAITKPVS-----SSGGIQTL-- 173
                           V     ++P ++  S+   P+ +   ++ VS     S G    L  
Sbjct:   125 AATNPIPVADISPTVAPPIPSEPMNKSASSAPSPSQAKPSSEKVSPFKNTSYGKPAKLAA 184

Query:   174 LDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIE 233
             L+ +     V++ SP VG F+RSRT+KGK+  PSCKE   ++EGQV+ Y+ QLG E+P+ 
Sbjct:   185 LEASGSTNYVLVTSPAVGKFQRSRTVKGKKQSPSCKEGDAIKEGQVIGYLHQLGTELPVT 244

Query:   234 SDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKL 269
             SD+AGEV+K+L  DGD +GYGDPL+ +LPSF  I +
Sbjct:   245 SDVAGEVLKLLSDDGDSVGYGDPLVAVLPSFHDINI 280

GO:0009507 "chloroplast" evidence=ISM;IDA

TIGR_CMR|CHY_1999 CHY_1999 "oxaloacetate decarboxylase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 143 (55.4 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 40/122 (32%), Positives = 67/122 (54%)

Query:   142 KPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAAD--EG-LVILESPKVGYFRRSRT 198
             K A +     S  T ++    PV+ + G+++  +K  +  EG   ++ SP VG F R+  
Sbjct:   498 KIAIKKGQGSSEGTVTMLPQAPVTEAKGVESK-EKVEEKNEGNFSLITSPMVGTFYRAPA 556

Query:   199 IKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
               G  APP  +  Q ++ G VLC IE +     IES+I+GE+++IL ++G+ + YG PL 
Sbjct:   557 -PG--APPFVEVGQKIKPGDVLCIIEAMKLMNEIESEISGEIVEILVENGEMVEYGQPLF 613

Query:   259 VI 260
              +
Sbjct:   614 KV 615

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008948 "oxaloacetate decarboxylase activity" evidence=ISS

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS

TAIR|locus:2171307 CAC1 "chloroplastic acetylcoenzyme A carboxylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 33/85 (38%), Positives = 45/85 (52%)

Query:   178 ADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIA 237
             A   L  ++SP  G F RS    G+  PP  K    V++GQVLC +E +     IESD  
Sbjct:   199 AKSSLPTVKSPMAGTFYRSPA-PGE--PPFIKVGDKVQKGQVLCIVEAMKLMNEIESDHT 255

Query:   238 GEVIKILRKDGDPIGYGDPLIVILP 262
             G V+ I+ +DG P+    PL V+ P
Sbjct:   256 GTVVDIVAEDGKPVSLDTPLFVVQP 280

GO:0003989 "acetyl-CoA carboxylase activity" evidence=IEA;IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS;TAS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0009374 "biotin binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2180927 BCCP2 "biotin carboxyl carrier protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 68/275 (24%), Positives = 114/275 (41%)

Query:     5 SLGASNIKIPKGNLGRARVGDLQPRSDVRKWMGRKPFQYAGLAMSQPLEKAFTVFC---G 61
             SL    +KI    L R RVG L P    ++W   +P Q  G++    + +  + F     
Sbjct:     3 SLSVPCVKICA--LNR-RVGSL-PGISTQRW---QP-QPNGISFPSDVSQNHSAFWRLRA 54

Query:    62 QSSE--AESTRNARDGHEDMKSTQLIPDSSEVESLVTDIC------NTTSVAEFELKLDG 113
              ++E  + ST     G+ + K+   +P+ +E+   +  +       ++  + E ELK   
Sbjct:    55 TTNEVVSNSTPMTNGGYMNGKAKTNVPEPAELSEFMAKVSGLLKLVDSKDIVELELKQLD 114

Query:   114 FRLYVTRDIAGDXXXXXXXXXXXXVTV----NKPADRPDS--NGSVPTSSLAITKPVSSS 167
               + + +  A                V    + P  +P +      PTS+ A  KP S  
Sbjct:   115 CEIVIRKKEALQQAVPPAPVYHSMPPVMADFSMPPAQPVALPPSPTPTSTPATAKPTS-- 172

Query:   168 GGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227
                      A       L+SP  G F RS    G   PP  K    V++GQ++C IE + 
Sbjct:   173 ---------APSSSHPPLKSPMAGTFYRS---PGPGEPPFVKVGDKVQKGQIVCIIEAMK 220

Query:   228 GEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262
                 IE++ +G ++++L +DG P+    PL VI P
Sbjct:   221 LMNEIEAEKSGTIMELLAEDGKPVSVDTPLFVIAP 255

GO:0003989 "acetyl-CoA carboxylase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009374 "biotin binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|GSU_2020 GSU_2020 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 114 (45.2 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 30/105 (28%), Positives = 54/105 (51%)

Query:   160 ITKPVSSSGGIQTLLDKAADE--GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREG 217
             I  PV+++      +  AA    G   + SP VG F R+       A P  +  Q V +G
Sbjct:    56 IAAPVAAAAPAPAAVSAAAPAVAGGKEVTSPIVGTFYRA---PAPDAAPYVEVGQVVEKG 112

Query:   218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262
             QVLC +E +     IE++   ++++I +++  P+ +G+PL ++ P
Sbjct:   113 QVLCIVEAMKLMNEIEAEFRCKIVQICKENAQPVEFGEPLFIVEP 157

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|BA_4409 BA_4409 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 113 (44.8 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 43/171 (25%), Positives = 75/171 (43%)

Query:    90 EVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDXXXXXXXXXXXXVTVNKPADRPDS 149
             EV  L+  + +++++ EFE K DG  + + +   G+              V K A +P +
Sbjct:     6 EVRELIK-LIDSSNIDEFEYKKDGTTIKMKK--RGNEVVAVQA------PVAKQAVQPVA 56

Query:   150 NGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCK 209
                V T+  A    V      Q       +E L  + SP VG F  S +      PP   
Sbjct:    57 PVEVETTVAAAQVEVPK----QEEKKAVQNENLHKITSPMVGTFYSSSS-SSPDTPPYVS 111

Query:   210 EKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
                 V +  ++C +E +     I++D+ GE+++IL  +G  + YG PL ++
Sbjct:   112 VGDRVSKDSIVCIVEAMKLFNEIDADVDGEIVEILVNNGQLVEYGQPLFLV 162

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

UNIPROTKB|Q9KV61 VC_0296 "Acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 109 (43.4 bits), Expect = 0.00033, P = 0.00033
 Identities = 36/120 (30%), Positives = 56/120 (46%)

Query:   142 KPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKA-ADEGLVILESPKVGYFRRSRTIK 200
             +PA  P  + +   + +A   PV+ +  +      A    G  +L SP VG F RS +  
Sbjct:    80 QPAPAPQVHYAAAPAPVAAPAPVAQAAAVAEAPAAAKVPAGHKVL-SPMVGTFYRSPSPD 138

Query:   201 GKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
              K      +  Q+V  G  LC +E +     IE+D +G V  IL +DG  + +  PL+VI
Sbjct:   139 AKAF---IEVGQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQTVEFDQPLVVI 195

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|VC_0296 VC_0296 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 109 (43.4 bits), Expect = 0.00033, P = 0.00033
 Identities = 36/120 (30%), Positives = 56/120 (46%)

Query:   142 KPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKA-ADEGLVILESPKVGYFRRSRTIK 200
             +PA  P  + +   + +A   PV+ +  +      A    G  +L SP VG F RS +  
Sbjct:    80 QPAPAPQVHYAAAPAPVAAPAPVAQAAAVAEAPAAAKVPAGHKVL-SPMVGTFYRSPSPD 138

Query:   201 GKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
              K      +  Q+V  G  LC +E +     IE+D +G V  IL +DG  + +  PL+VI
Sbjct:   139 AKAF---IEVGQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQTVEFDQPLVVI 195

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G15690	biotin carboxyl carrier protein of acetyl-CoA carboxylase-related; biotin carboxyl carrier protein of acetyl-CoA carboxylase-related; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Single hybrid motif (InterPro-IPR011053), Biotin/lipoyl attachment (InterPro-IPR000089); BEST Arabidopsis thaliana protein match is- biotin/lipoyl attachment domain-containing protein (TAIR-AT1G52670.1); Has 1999 Blast hits to 1999 proteins in 727 species- Archae - 2; Bacteria - 1353; Metazoa - 8; Fungi - 0; Plants - 75; Viruses - 0 [...] (263 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	GLB1	GLB1 (GLNB1 HOMOLOG); acetylglutamate kinase regulator; encodes a PII protein that may function [...] (196 aa)					•				0.855
	AT1G12250	thylakoid lumenal protein-related; thylakoid lumenal protein-related; FUNCTIONS IN- molecular_f [...] (280 aa)				•					0.591
	AT1G76730	5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase fam [...] (354 aa)				•					0.587
	AT3G25660	glutamyl-tRNA(Gln) amidotransferase, putative; glutamyl-tRNA(Gln) amidotransferase, putative; F [...] (537 aa)				•					0.581
	HCF136	HCF136; protein binding; encodes a stability and/or assembly factor of photosystem II ; Essenti [...] (403 aa)				•					0.577
	CAC2	CAC2; acetyl-CoA carboxylase/ biotin carboxylase; Encodes biotin carboxylase subunit (CAC2). (537 aa)	•		•	•			•		0.575
	AT3G57180	GTP binding; GTP binding; FUNCTIONS IN- GTP binding; INVOLVED IN- biological_process unknown; L [...] (644 aa)				•					0.565
	AT1G27480	lecithin-cholesterol acyltransferase family protein / LACT family protein; lecithin-cholesterol [...] (432 aa)				•					0.556
	AT5G13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta [...] (238 aa)				•					0.548
	AT3G62300	agenet domain-containing protein; agenet domain-containing protein; FUNCTIONS IN- RNA binding; [...] (722 aa)				•					0.548

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	1e-16
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	1e-16
TIGR00531	156	TIGR00531, BCCP, acetyl-CoA carboxylase, biotin ca	9e-16
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	6e-14
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	1e-10
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	3e-09
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	4e-09
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	4e-06
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	6e-06
PRK08225	70	PRK08225, PRK08225, acetyl-CoA carboxylase biotin	6e-05
PRK07051	80	PRK07051, PRK07051, hypothetical protein; Validate	1e-04
COG1038	1149	COG1038, PycA, Pyruvate carboxylase [Energy produc	3e-04
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	3e-04
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	3e-04
PRK05889	71	PRK05889, PRK05889, putative acetyl-CoA carboxylas	0.001
PRK14040	593	PRK14040, PRK14040, oxaloacetate decarboxylase; Pr	0.002
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	0.002

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 74.0 bits (182), Expect = 1e-16
 Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 31/161 (19%)

Query: 100 NTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLA 159
             +   EFE+K++   + ++R        P+    PAP  +   A  P +  + P +S  
Sbjct: 9   VESDGTEFEVKVEEGEVRLSRK------TPVVQDVPAPAPI--EASSPSAAAAQPAASAP 60

Query: 160 ITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQV 219
              P +++GG Q             + SP VG   +          P  +   TV+ GQ 
Sbjct: 61  APAPAAAAGGTQ-------------VTSPMVGTVYK----------PFVEVGDTVKAGQT 97

Query: 220 LCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           L  IE +  E  IE+   G V +IL K+GDP+ YGDPL VI
Sbjct: 98  LAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVI 138

Length = 140

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 74.4 bits (184), Expect = 1e-16
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 20/164 (12%)

Query: 97  DICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTS 156
           ++ + + ++EFE+K     + ++R  A    P    ++ APV     A  P +  +   +
Sbjct: 11  ELVDESGISEFEIKEGEESVRISRAAAAPVAPVAQQAAAAPV-----AAAPAAAAAAAAA 65

Query: 157 SLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE 216
             A     +           A  EG V+  SP VG F R+       APP  +   TV+E
Sbjct: 66  PAAAPAAAA-----------AEAEGHVV-TSPMVGTFYRA---PSPDAPPFVEVGDTVKE 110

Query: 217 GQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           GQ LC IE +     IE+D +G V +IL ++G P+ +G PL VI
Sbjct: 111 GQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVI 154

Length = 155

>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier protein

 Score = 72.6 bits (178), Expect = 9e-16
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 20/174 (11%)

Query: 87  DSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADR 146
           +  E++ L+  I   + + E ELK + F + +++  A      +  ++ APV    PA  
Sbjct: 2   NIREIKELIKLI-EESGITELELKEEEFEVRLSKAAAAAKKSAVQQAA-APVPAQVPAA- 58

Query: 147 PDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPP 206
              +   P  ++    P              AD+    + SP VG F R+ +     A P
Sbjct: 59  --PSAQAPAPAVCAPAP------------AKADKKGHFVRSPMVGTFYRAPS---PDAKP 101

Query: 207 SCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
             +    V++GQ++C +E +     IE+++AG+V++IL ++G P+ YG PLIVI
Sbjct: 102 FVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVI 155

This model is designed to identify biotin carboxyl carrier protein as a peptide of acetyl-CoA carboxylase. Scoring below the trusted cutoff is a related protein encoded in a region associated with polyketide synthesis in the prokaryote Saccharopolyspora hirsuta, and a reported chloroplast-encoded biotin carboxyl carrier protein that may be highly derived from the last common ancestral sequence. Scoring below the noise cutoff are biotin carboxyl carrier domains of other enzymes such as pyruvate carboxylase.The gene name is accB or fabE [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 156

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 64.7 bits (159), Expect = 6e-14
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 206 PSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
              KE   V  GQ L  +E +  E  + + +AG V +IL K+GD +  G  L+VI
Sbjct: 13  VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262
           KE   V+ G  +  +E +  E  I++ + G V +IL K+GD +  GD L+ I P
Sbjct: 539 KEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592

Length = 592

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           K    V+ GQVLC +E +  E+ I + +AG V +IL K+GD +  GDPL  I
Sbjct: 22  KVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGDTVEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 42/136 (30%), Positives = 58/136 (42%), Gaps = 18/136 (13%)

Query: 128 PPLPPSSPAPVTVNKPADRPDSNGSVPTSSLA-ITKPVSSSGGIQTLLDKAADEGLVILE 186
           PP     PA     +PA    ++   PT +     K   SS                 L+
Sbjct: 156 PPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSS--------------HPPLK 201

Query: 187 SPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRK 246
           SP  G F RS        PP  K    V++GQV+C IE +     IE+D +G +++IL +
Sbjct: 202 SPMAGTFYRS---PAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAE 258

Query: 247 DGDPIGYGDPLIVILP 262
           DG P+    PL VI P
Sbjct: 259 DGKPVSVDTPLFVIEP 274

Length = 274

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 212  QTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
              V  GQ L  +E +  E+P+ + +AG+V KIL + GD +  GD + V+
Sbjct: 1152 DRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVL 1200

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           K    V++G VL  IE +     +E+  +G V K+L K+G  +    PL+ I
Sbjct: 22  KVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           K   TV EGQ +  +E +  EIPI ++ AG V KI  ++GD +  GD L+ I
Sbjct: 18  KVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEI 69

Length = 70

>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 185 LESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL 244
           + SP  G F R  +     APP  +    V  G V+  IE +     +E++ AG V++ L
Sbjct: 6   IVSPLPGTFYRRPS---PDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFL 62

Query: 245 RKDGDPIGYGDPLIVI 260
            +DG+P+  G  L  I
Sbjct: 63  VEDGEPVEAGQVLARI 78

Length = 80

>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 209  KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
            K+   V++G VL  IE +  E  I +   G V ++L KDGD I  GD L+V+
Sbjct: 1096 KKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVV 1147

Length = 1149

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 44/180 (24%), Positives = 64/180 (35%), Gaps = 30/180 (16%)

Query: 79  MKSTQLIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPV 138
           M   ++I D  E E  V ++       +F +  +G    V     G  +  +    P P 
Sbjct: 1   MMKVKVIVDGVEYEVEVEEL----GPGKFRVSFEGKTYEVEAKGLGIDLSAVQEQVPTPA 56

Query: 139 TVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRT 198
               PA         P +  A     +S+G           E +V    P          
Sbjct: 57  PAPAPAVPS---APTPVAPAAPAPAPASAG-----------ENVVTAPMP---------- 92

Query: 199 IKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
             GK      +E Q V+ GQ L  +E +  E  I +   G V KIL K+GD +  G PLI
Sbjct: 93  --GKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLI 150

Length = 153

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           KE  +V EG VL  +E     + +E+  AG + KIL ++GD +  G  + VI
Sbjct: 23  KEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
            E   + +G  L  +E +  EIP+ +++AG V K+    GD I  GD + VI
Sbjct: 19  NEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70

Length = 71

>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
            E QTV EG VL  +E +  E  I +  AG V  I  K+GD +  GD L+ +
Sbjct: 541 TEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592

Length = 593

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 209  KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262
            KE   V+ G  L  IE +  E  I + + G V ++L K GD +  GD L+ + P
Sbjct: 1093 KEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146

Length = 1146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	100.0
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.98
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.95
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.93
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.72
PRK07051	80	hypothetical protein; Validated	99.68
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.65
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.64
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.6
PRK06748	83	hypothetical protein; Validated	99.57
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.57
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.45
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.35
PRK14040	593	oxaloacetate decarboxylase; Provisional	99.28
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.28
PRK09282	592	pyruvate carboxylase subunit B; Validated	99.27
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.26
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.25
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	99.24
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.2
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.2
PRK12999	1146	pyruvate carboxylase; Reviewed	99.17
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.17
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	99.15
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	99.07
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.07
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.03
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	98.94
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	98.93
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	98.93
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.92
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	98.91
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	98.88
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	98.85
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	98.72
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.71
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.7
PRK01202	127	glycine cleavage system protein H; Provisional	98.7
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	98.67
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.64
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	98.57
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	98.57
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.56
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.53
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	98.52
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	98.48
PRK00624	114	glycine cleavage system protein H; Provisional	98.48
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	98.47
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	98.33
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	98.31
PRK13380	144	glycine cleavage system protein H; Provisional	98.18
PRK09783	409	copper/silver efflux system membrane fusion protei	98.08
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.07
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	98.01
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	97.94
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	97.92
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	97.9
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.85
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	97.81
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.73
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.69
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.68
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.66
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.63
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	97.61
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.56
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.5
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	97.49
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.48
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	97.41
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.34
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.27
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	97.27
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	97.2
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	97.2
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	97.13
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	97.11
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	97.1
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.04
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.02
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	97.01
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	96.95
PRK12784	84	hypothetical protein; Provisional	96.82
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	96.79
PRK06748	83	hypothetical protein; Validated	96.73
COG3608	331	Predicted deacylase [General function prediction o	96.52
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	96.41
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	96.38
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	96.07
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.91
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	95.86
PF13437	105	HlyD_3: HlyD family secretion protein	95.73
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	95.59
PRK10476	346	multidrug resistance protein MdtN; Provisional	95.52
PRK09439	169	PTS system glucose-specific transporter subunit; P	95.45
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	95.44
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	95.38
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	95.08
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.06
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	95.02
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	94.93
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	94.65
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	94.65
PRK03598	331	putative efflux pump membrane fusion protein; Prov	94.64
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	94.61
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.6
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	94.59
PRK15136	390	multidrug efflux system protein EmrA; Provisional	94.56
PRK07051	80	hypothetical protein; Validated	94.39
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	94.35
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	94.3
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	94.26
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	94.25
PRK05035	695	electron transport complex protein RnfC; Provision	94.18
PRK11578	370	macrolide transporter subunit MacA; Provisional	94.18
PRK09859	385	multidrug efflux system protein MdtE; Provisional	94.11
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	94.11
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	94.04
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	93.88
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	93.86
COG2190	156	NagE Phosphotransferase system IIA components [Car	93.78
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	93.63
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	93.52
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	93.32
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	93.24
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	93.13
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	92.33
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.03
PRK09783	409	copper/silver efflux system membrane fusion protei	91.89
PRK14042	596	pyruvate carboxylase subunit B; Provisional	91.87
PF13437	105	HlyD_3: HlyD family secretion protein	91.72
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	91.31
PRK10255	648	PTS system N-acetyl glucosamine specific transport	91.26
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	90.65
PRK14040	593	oxaloacetate decarboxylase; Provisional	90.64
PRK09824	627	PTS system beta-glucoside-specific transporter sub	90.18
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	89.71
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	89.71
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	89.62
PF00529	305	HlyD: HlyD family secretion protein the correspond	89.61
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	89.4
PRK05305	206	phosphatidylserine decarboxylase; Provisional	89.39
PRK09282	592	pyruvate carboxylase subunit B; Validated	89.28
PRK12784	84	hypothetical protein; Provisional	89.17
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	89.0
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	88.85
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	87.63
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	87.42
PF06898	385	YqfD: Putative stage IV sporulation protein YqfD;	86.89
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	86.86
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	86.13
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	85.14
PRK12999	1146	pyruvate carboxylase; Reviewed	84.48
TIGR02876	382	spore_yqfD sporulation protein YqfD. YqfD is part	84.02
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	82.95
PRK09439	169	PTS system glucose-specific transporter subunit; P	82.35
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	82.01
PF02666	202	PS_Dcarbxylase: Phosphatidylserine decarboxylase;	81.7
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	81.65
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	81.06

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=100.00  E-value=7.5e-32  Score=230.64  Aligned_cols=156  Identities=29%  Similarity=0.521  Sum_probs=112.5

Q ss_pred             CCHHHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCC
Q 024168           86 PDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVS  165 (271)
Q Consensus        86 md~~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~~p~~~~a~~~~~~~~~ap~~~~~~~~~s~~~~~pa~  165 (271)
                      ||+++|++||+ ++++|+|+||+|+.+|++|+|+|+........ ..+.+++.....+  ++..+  . ....+...+++
T Consensus         1 Md~~~Ik~Li~-~~~~s~l~elei~~~~~~l~l~k~~~~~~~~~-~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~~   73 (156)
T TIGR00531         1 MNIREIKELIK-LIEESGITELELKEEEFEVRLSKAAAAAKKSA-VQQAAAPVPAQVP--AAPSA--Q-APAPAVCAPAP   73 (156)
T ss_pred             CCHHHHHHHHH-HHHHCCCcEEEEEeCCEEEEEEecCCCCcccc-ccccCCCccccCC--CCCCC--C-CCCCCCCCCCc
Confidence            89999999997 77999999999999999999999643211100 0000011000000  00000  0 00000000000


Q ss_pred             CCCCccccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168          166 SSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR  245 (271)
Q Consensus       166 ~~~~~~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv  245 (271)
                                .....+...|+|||+|+||++++   |+.+|||++||.|++||+||+||+||++++|+|+++|+|.+|++
T Consensus        74 ----------~~~~~~~~~v~sp~~G~~~~~~~---P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v  140 (156)
T TIGR00531        74 ----------AKADKKGHFVRSPMVGTFYRAPS---PDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILV  140 (156)
T ss_pred             ----------ccccCCCCEEeCCCCEEEEecCC---CCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEe
Confidence                      01122346799999999999986   99999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCeEEEEe
Q 024168          246 KDGDPIGYGDPLIVIL  261 (271)
Q Consensus       246 ~~Gd~V~~Gq~L~~I~  261 (271)
                      ++|+.|+|||+||+|+
T Consensus       141 ~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       141 ENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CCCCEECCCCEEEEEC
Confidence            9999999999999984

The gene name is accB or fabE.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.98  E-value=4.6e-31  Score=225.48  Aligned_cols=155  Identities=32%  Similarity=0.534  Sum_probs=112.0

Q ss_pred             CCHHHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCC
Q 024168           86 PDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVS  165 (271)
Q Consensus        86 md~~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~~p~~~~a~~~~~~~~~ap~~~~~~~~~s~~~~~pa~  165 (271)
                      ||+++|++||+ ++++|+|+||+|+.+|++|+|+|+......+.......++... .+...++.     ...+. ..+..
T Consensus         1 Md~~~I~~Li~-~~~~s~l~ele~~~~~~~i~l~k~~~~~~~~~~~~~~~~p~~~-~~~~~~~~-----~~~~~-~~~~~   72 (155)
T PRK06302          1 MDIRKIKKLIE-LVDESGISEFEIKEGEESVRISRAAAAPVAPVAQQAAAAPVAA-APAAAAAA-----AAAPA-AAPAA   72 (155)
T ss_pred             CCHHHHHHHHH-HHHHCCCeEEEEEcCCEEEEEEeCCCCCccccccccccCCCCC-CCCCCCcc-----ccCCC-CCCCC
Confidence            89999999997 7799999999999999999999964321100000000001000 00000000     00000 00000


Q ss_pred             CCCCccccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168          166 SSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR  245 (271)
Q Consensus       166 ~~~~~~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv  245 (271)
                               . ....+...|+|||+|+||++|+   |+.+|||++||.|++||+||+||+||++++|+|+++|+|++|++
T Consensus        73 ---------~-~~~~~~~~v~sp~~G~~~~~~s---P~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v  139 (155)
T PRK06302         73 ---------A-AAEAEGHVVTSPMVGTFYRAPS---PDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILV  139 (155)
T ss_pred             ---------C-ccCCCCCEEeCCcCEEEEecCC---CCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEc
Confidence                     0 1112336799999999999986   99999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCeEEEEe
Q 024168          246 KDGDPIGYGDPLIVIL  261 (271)
Q Consensus       246 ~~Gd~V~~Gq~L~~I~  261 (271)
                      ++|+.|+|||+||+|+
T Consensus       140 ~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        140 ENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CCCCEeCCCCEEEEeC
Confidence            9999999999999984

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.95  E-value=2.7e-27  Score=199.17  Aligned_cols=140  Identities=33%  Similarity=0.506  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCCCCCc
Q 024168           91 VESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGI  170 (271)
Q Consensus        91 I~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~~p~~~~a~~~~~~~~~ap~~~~~~~~~s~~~~~pa~~~~~~  170 (271)
                      |++|+. ++.++++.+|+++.+++++++.|........  ....+....  .+....+    .+.++.  ..+.+     
T Consensus         1 i~~l~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~----~~~~~~--~~~~~-----   64 (140)
T COG0511           1 IKELIK-LVVESDGTEFEVKVEEGEVRLSRKTPVVQDV--PAPAPIEAS--SPSAAAA----QPAASA--PAPAP-----   64 (140)
T ss_pred             Ccchhh-heeeeCcEEEEEEeCCcEEEEeecccccccc--ccccccccc--ccccccc----Cccccc--ccCCc-----
Confidence            356786 6689999999999999999999976110000  000000000  0000000    000000  00110     


Q ss_pred             cccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCc
Q 024168          171 QTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDP  250 (271)
Q Consensus       171 ~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~  250 (271)
                            +...+...|+|||+|+||+          +||++||.|++||+||+||+|||+|+|.||.+|+|.+|++++||.
T Consensus        65 ------~~~~~~~~V~SPm~Gtv~~----------~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~  128 (140)
T COG0511          65 ------AAAAGGTQVTSPMVGTVYK----------PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP  128 (140)
T ss_pred             ------cccccCceEecCcceEEEE----------EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc
Confidence                  1111456899999999996          699999999999999999999999999999999999999999999


Q ss_pred             ccCCCeEEEEec
Q 024168          251 IGYGDPLIVILP  262 (271)
Q Consensus       251 V~~Gq~L~~I~~  262 (271)
                      |+|||+|++|++
T Consensus       129 Ve~G~~L~~I~~  140 (140)
T COG0511         129 VEYGDPLAVIEP  140 (140)
T ss_pred             cCCCCEEEEecC
Confidence            999999999974

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.93  E-value=1.7e-24  Score=198.18  Aligned_cols=163  Identities=34%  Similarity=0.518  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCC-CCC-C-CCCCcCCCCCCCCCCC--CCCCCCCccccCCC
Q 024168           89 SEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPP-LPP-S-SPAPVTVNKPADRPDS--NGSVPTSSLAITKP  163 (271)
Q Consensus        89 ~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~-~p~-~-~~a~~~~~~~~~ap~~--~~~~~~~s~~~~~p  163 (271)
                      .++..|++ ++|..+|.||+|+.-|++|-|+|...-...+. .+. . .+.......+...++.  +.+.+.++ +...+
T Consensus       107 ~qv~~lv~-lv~~~di~e~~lk~~~~e~~irkkeal~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~  184 (274)
T PLN02983        107 TQVSSLVK-LVDSRDIVELQLKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASS-PPPTP  184 (274)
T ss_pred             HHHHHHHh-hhccccceeeeccccceEEEEecccccCCCCCCCceEEecCCCcccCCCCCCcccCCCCCCCCCC-CCCCC
Confidence            45556775 88999999999999999999999875432110 000 0 0000000000000000  00000000 00000


Q ss_pred             CCCCCCccccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE
Q 024168          164 VSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI  243 (271)
Q Consensus       164 a~~~~~~~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I  243 (271)
                      +      .+....+...+...|+|||.|+||+.|.   ++..|+|++||.|++||+||+||+||++++|+|+++|+|++|
T Consensus       185 ~------~~~~~~~~~s~~~~V~APmaGtf~r~p~---pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eI  255 (274)
T PLN02983        185 A------SPPPAKAPKSSHPPLKSPMAGTFYRSPA---PGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEI  255 (274)
T ss_pred             C------CCCCCCCCcCCCCeEeCCcCeEEEeccC---CCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEE
Confidence            0      0111123456668899999999999885   788999999999999999999999999999999999999999


Q ss_pred             ecCCCCcccCCCeEEEEec
Q 024168          244 LRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       244 lv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ++++||.|.+|++||+|+|
T Consensus       256 lVkeGD~V~vGqpL~~IEP  274 (274)
T PLN02983        256 LAEDGKPVSVDTPLFVIEP  274 (274)
T ss_pred             ecCCCCEeCCCCEEEEecC
Confidence            9999999999999999964

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.72  E-value=8e-18  Score=126.80  Aligned_cols=73  Identities=25%  Similarity=0.411  Sum_probs=69.7

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      .|++|+.|.+++..    ...+|+|++||.|++||+||.||+||+..+|+||.+|+|.++++++|+.|.+|++|++|
T Consensus         2 ~i~~P~~G~~~~~~----~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    2 EIKAPMLGEVMEEG----TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEESSSSEEEEEE----EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             EEECCCCccEEEec----ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            69999999999875    56889999999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK07051 hypothetical protein; Validated

Probab=99.68  E-value=3.7e-16  Score=119.46  Aligned_cols=76  Identities=32%  Similarity=0.473  Sum_probs=72.4

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..|+||+.|+||+++.   |..++++++||.|++||+|+.+|+||+..+|+||.+|+|.++++++|+.|.+|++|+++.
T Consensus         4 ~~~~ap~~g~~~~~~~---~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051          4 HEIVSPLPGTFYRRPS---PDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             cEEeCCCceEEEecCC---CCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            4699999999999875   788999999999999999999999999999999999999999999999999999999984

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.65  E-value=7.5e-16  Score=114.96  Aligned_cols=67  Identities=28%  Similarity=0.395  Sum_probs=64.6

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      .|+||+.|+++.          |+|++||.|++||+|+.+|+||+..+|+||++|+|.++++++|+.|..|++|++|
T Consensus         4 ~v~a~~~G~i~~----------~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i   70 (71)
T PRK05889          4 DVRAEIVASVLE----------VVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVI   70 (71)
T ss_pred             EEeCCCCEEEEE----------EEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence            599999999974          8999999999999999999999999999999999999999999999999999987

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.64  E-value=1.1e-14  Score=121.80  Aligned_cols=70  Identities=30%  Similarity=0.313  Sum_probs=66.7

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      +...|+||+.|+++.          |+|++||.|++||+|+.||+||+.++|.||.+|+|.+|+++.||.|..|++|++|
T Consensus        60 ~~~~v~Ap~~G~V~~----------i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         60 GADAMPSPMPGTILK----------VLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             CCcEEECCCCEEEEE----------EEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            457899999999974          8899999999999999999999999999999999999999999999999999987

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.60  E-value=4.2e-15  Score=110.25  Aligned_cols=68  Identities=34%  Similarity=0.404  Sum_probs=65.1

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      .|.||+.|.|++          |++++||.|++||+|+.||+||+..+|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus         3 ~i~a~~~G~i~~----------~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          3 KVYASMAGNVWK----------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             eEeCCCCEEEEE----------EEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            589999999985          78999999999999999999999999999999999999999999999999999984

>PRK06748 hypothetical protein; Validated

Probab=99.57  E-value=1.3e-14  Score=112.73  Aligned_cols=71  Identities=23%  Similarity=0.209  Sum_probs=66.3

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe-cCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ-LGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa-mK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      +..|+||+.|++.          .|++++||.|++||+|+.||+ .|.+.+|.||.+|+|.+|+++.||.|..|++|+.|
T Consensus         4 ~~~v~sp~~G~I~----------~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I   73 (83)
T PRK06748          4 IEGVYSPCYGKVE----------KLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITV   73 (83)
T ss_pred             eeEEecCCcEEEE----------EEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence            4679999999996          489999999999999999999 57888999999999999999999999999999999


Q ss_pred             ec
Q 024168          261 LP  262 (271)
Q Consensus       261 ~~  262 (271)
                      ..
T Consensus        74 ~~   75 (83)
T PRK06748         74 RD   75 (83)
T ss_pred             EC
Confidence            64

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.57  E-value=5.9e-14  Score=120.22  Aligned_cols=70  Identities=36%  Similarity=0.473  Sum_probs=66.2

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      +...|+||+.|+++.          |+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++||.|..||+|++|
T Consensus        83 ~~~~v~ap~~G~I~~----------~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         83 GENVVTAPMPGKILR----------ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CCCEEECCCCeEEEE----------EEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            335799999999974          8999999999999999999999999999999999999999999999999999987

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.45  E-value=3.3e-13  Score=96.73  Aligned_cols=66  Identities=33%  Similarity=0.475  Sum_probs=62.6

Q ss_pred             EeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          185 LESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       185 V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      |+||+.|.|.+          |++++||.|++||+|+.|+++++..+|+||.+|+|..+++++|+.|..|++|+.|
T Consensus         2 v~a~~~G~v~~----------~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           2 VTAPMPGTVVK----------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             ccCCccEEEEE----------EEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            78999999964          7899999999999999999999999999999999999999999999999999975

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.35  E-value=2.7e-12  Score=130.14  Aligned_cols=70  Identities=24%  Similarity=0.259  Sum_probs=66.6

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.|||.|++..          |+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|..|++|+.|+.
T Consensus       526 ~~v~apm~G~V~~----------~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        526 GDITVAIPGSIIA----------IHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             CeEecCcceEEEE----------EEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            3699999999974          889999999999999999999999999999999999999999999999999999964

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=99.28  E-value=5.9e-11  Score=120.43  Aligned_cols=68  Identities=34%  Similarity=0.460  Sum_probs=65.3

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      ..|+|||.|.++.          |+|++||.|++||+|+.||+||+.++|.||++|+|.++++++|+.|..|++|+.|
T Consensus       525 ~~V~Ap~~G~I~~----------~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  592 (593)
T PRK14040        525 EPVTAPLAGNIFK----------VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL  592 (593)
T ss_pred             ceEECCccEEEEE----------EEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence            4799999999974          7899999999999999999999999999999999999999999999999999987

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.28  E-value=6.3e-12  Score=116.02  Aligned_cols=61  Identities=21%  Similarity=0.241  Sum_probs=58.3

Q ss_pred             CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ...|+|++||.|++||+|+.||+||+.++|+||.+|+|.++++++|+.|..|++|+.|.+.
T Consensus        19 ~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~   79 (371)
T PRK14875         19 VAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADA   79 (371)
T ss_pred             EEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecC
Confidence            3579999999999999999999999999999999999999999999999999999999864

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=99.27  E-value=1.2e-11  Score=125.31  Aligned_cols=70  Identities=31%  Similarity=0.457  Sum_probs=66.8

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+||+.|+++.          ++|++||.|++||+|+.||+||+.++|+||++|+|.++++++|+.|.+|++|++|+|
T Consensus       523 ~~V~Ap~~G~v~~----------~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~  592 (592)
T PRK09282        523 GAVTSPMPGTVVK----------VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP  592 (592)
T ss_pred             ceEeCCCcEEEEE----------EEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence            5799999999974          689999999999999999999999999999999999999999999999999999975

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.26  E-value=2.1e-11  Score=90.23  Aligned_cols=56  Identities=30%  Similarity=0.401  Sum_probs=54.0

Q ss_pred             CCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          205 PPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       205 ~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      .|++++||.|++||.|+.+|+||+..+|+||++|+|+++++++|+.|..|++|++|
T Consensus        18 ~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          18 KWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             EEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            37899999999999999999999999999999999999999999999999999975

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>TIGR02712 urea_carbox urea carboxylase

Probab=99.25  E-value=1.8e-11  Score=132.55  Aligned_cols=73  Identities=33%  Similarity=0.472  Sum_probs=68.7

Q ss_pred             CCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          179 DEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       179 ~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                      +.+...|.||+.|+++.          |+|++||.|++||+|++||+|||.++|.||++|+|++|++++|+.|..||+|+
T Consensus      1129 ~~~~~~v~a~~~G~v~~----------~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~ 1198 (1201)
T TIGR02712      1129 PEGAEQVESEYAGNFWK----------VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVA 1198 (1201)
T ss_pred             CCCCcEEeCCceEEEEE----------EEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEE
Confidence            45567899999999984          89999999999999999999999999999999999999999999999999999


Q ss_pred             EEe
Q 024168          259 VIL  261 (271)
Q Consensus       259 ~I~  261 (271)
                      .|+
T Consensus      1199 ~i~ 1201 (1201)
T TIGR02712      1199 VLE 1201 (1201)
T ss_pred             EeC
Confidence            874

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=99.24  E-value=1.6e-11  Score=124.36  Aligned_cols=65  Identities=35%  Similarity=0.470  Sum_probs=62.2

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeE
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPL  257 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L  257 (271)
                      ..|.|||+|+++.          |+|++||.|++||+|++||+|||.++|.||.+|+|.+|++++|+.|..|++|
T Consensus       518 ~~v~ap~~G~v~~----------~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       518 TPVTAPIAGSIVK----------VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             CeEeCCccEEEEE----------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            4699999999974          8999999999999999999999999999999999999999999999999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=99.20  E-value=3.4e-11  Score=129.70  Aligned_cols=71  Identities=24%  Similarity=0.339  Sum_probs=66.7

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      +...|.|||.|.++.          |+|++||.|++||+|++||+|||.++|.||.+|+|.+|++++|+.|+.|++|++|
T Consensus      1073 ~~~~I~a~~~G~v~~----------~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i 1142 (1143)
T TIGR01235      1073 NPAHVGAPMPGVIIE----------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVL 1142 (1143)
T ss_pred             cCceeecCCCcEEEE----------EEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence            345799999999963          8899999999999999999999999999999999999999999999999999988


Q ss_pred             e
Q 024168          261 L  261 (271)
Q Consensus       261 ~  261 (271)
                      +
T Consensus      1143 ~ 1143 (1143)
T TIGR01235      1143 E 1143 (1143)
T ss_pred             C
Confidence            4

This enzyme plays a role in gluconeogensis but not glycolysis.

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.20  E-value=2.3e-11  Score=120.09  Aligned_cols=77  Identities=26%  Similarity=0.277  Sum_probs=67.0

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+-|..|.-...    |-..+|+|++||.|++||+||+||+||+.++|+||++|+|.+|++++||.|..|++|+.|..
T Consensus        92 ~~i~mP~lg~~~~e----G~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~  167 (463)
T PLN02226         92 VEAVVPHMGESITD----GTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK  167 (463)
T ss_pred             eEEecCCCCCCcce----EEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence            57788887743221    23467999999999999999999999999999999999999999999999999999999975


Q ss_pred             C
Q 024168          263 S  263 (271)
Q Consensus       263 ~  263 (271)
                      .
T Consensus       168 ~  168 (463)
T PLN02226        168 S  168 (463)
T ss_pred             C
Confidence            3

>PRK12999 pyruvate carboxylase; Reviewed

Probab=99.17  E-value=6.4e-11  Score=127.77  Aligned_cols=71  Identities=30%  Similarity=0.407  Sum_probs=66.9

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ...|.|||.|++..          ++|++||.|++||+|++||+|||.++|+||++|+|.+|++++|+.|+.|+.|+.|+
T Consensus      1076 ~~~v~apm~G~v~~----------i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1076 PGHVGAPMPGSVVT----------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             CceEeCCceEEEEE----------EEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            35799999999964          78999999999999999999999999999999999999999999999999999986


Q ss_pred             c
Q 024168          262 P  262 (271)
Q Consensus       262 ~  262 (271)
                      +
T Consensus      1146 ~ 1146 (1146)
T PRK12999       1146 P 1146 (1146)
T ss_pred             C
Confidence            4

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.17  E-value=3.8e-11  Score=117.31  Aligned_cols=78  Identities=26%  Similarity=0.400  Sum_probs=68.4

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      +..|+-|..|.-...    |....|+|++||.|++||+||.||+||+.++|+||++|+|.+|++++|+.|..|++|+.|.
T Consensus        44 i~~i~~P~lg~~~~e----g~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~  119 (418)
T PTZ00144         44 IKVIKVPTMGDSISE----GTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID  119 (418)
T ss_pred             ceEEecCCCCCCcce----EEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence            357888888753332    2456899999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q 024168          262 PS  263 (271)
Q Consensus       262 ~~  263 (271)
                      ..
T Consensus       120 ~~  121 (418)
T PTZ00144        120 TG  121 (418)
T ss_pred             CC
Confidence            54

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=99.15  E-value=7e-11  Score=118.06  Aligned_cols=70  Identities=26%  Similarity=0.317  Sum_probs=65.9

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..+++||.|++..          ..|++|+.|.+||+|+++|+|||.+.|+||.+|+|.++.++.|+.|..|++|+++++
T Consensus       576 ~~l~aPMpG~v~~----------v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~  645 (645)
T COG4770         576 GELLAPMPGTVVS----------VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE  645 (645)
T ss_pred             CceecCCCceEEE----------EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence            4699999999975          569999999999999999999999999999999999999999999999999999864

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=99.07  E-value=1.4e-10  Score=119.57  Aligned_cols=75  Identities=32%  Similarity=0.427  Sum_probs=68.2

Q ss_pred             cCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCe
Q 024168          177 AADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDP  256 (271)
Q Consensus       177 a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~  256 (271)
                      ++..|-..|-|||.|++..          .+|+.||.|++||+|.++|+|||...|.||++|+|.+++|.+||.|+.||.
T Consensus      1074 Ad~~Np~higApmpG~Vv~----------v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDL 1143 (1149)
T COG1038        1074 ADPGNPGHIGAPMPGVVVE----------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDL 1143 (1149)
T ss_pred             cCCCCccccCCCCCCceEE----------EEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCce
Confidence            3444556899999998864          679999999999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q 024168          257 LIVIL  261 (271)
Q Consensus       257 L~~I~  261 (271)
                      |+.+.
T Consensus      1144 Li~~~ 1148 (1149)
T COG1038        1144 LVVVE 1148 (1149)
T ss_pred             EEEcc
Confidence            99875

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.07  E-value=2e-10  Score=111.87  Aligned_cols=78  Identities=24%  Similarity=0.285  Sum_probs=68.1

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+.|..|.-+..    |...+|++++||.|++||+|+.||++|...||.||++|+|.+|+++.|+.|..|++|++|..
T Consensus         3 ~ei~mP~lge~~~E----G~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~   78 (404)
T COG0508           3 IEIKMPDLGETMTE----GTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE   78 (404)
T ss_pred             ceEecCCCCCccce----EEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEec
Confidence            35777777753322    34578999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q 024168          263 SF  264 (271)
Q Consensus       263 ~~  264 (271)
                      ..
T Consensus        79 ~~   80 (404)
T COG0508          79 EG   80 (404)
T ss_pred             CC
Confidence            53

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.03  E-value=6.8e-10  Score=108.20  Aligned_cols=61  Identities=26%  Similarity=0.248  Sum_probs=58.0

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      ..|+|++||.|++||+||.||+||+.++|+||++|+|.+|+++.|+.|..|++|++|....
T Consensus        20 ~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (407)
T PRK05704         20 ATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA   80 (407)
T ss_pred             EEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            3599999999999999999999999999999999999999999999999999999998643

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.94  E-value=1.5e-09  Score=109.21  Aligned_cols=77  Identities=19%  Similarity=0.216  Sum_probs=70.8

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ...|+.|..|. ...    |....|+|++||.|++||.|+.||+||+.++|+||++|+|.+|+++.|+.|..|++|+.|.
T Consensus       116 ~~~~~~P~~g~-~~e----g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~  190 (546)
T TIGR01348       116 VQEVTVPDIGD-IEK----VTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS  190 (546)
T ss_pred             ceEEeCCCCCC-cce----eEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence            36899999998 543    3578999999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q 024168          262 PS  263 (271)
Q Consensus       262 ~~  263 (271)
                      ..
T Consensus       191 ~~  192 (546)
T TIGR01348       191 VA  192 (546)
T ss_pred             cC
Confidence            53

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=98.93  E-value=1.7e-09  Score=110.60  Aligned_cols=76  Identities=18%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ...|+.|..| .-.     |-...|+|++||.|++||+||.||+||+.++|+||++|+|.+|++++|+.|..|++|+.|.
T Consensus       206 ~~~~~~p~lg-~~e-----g~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~  279 (633)
T PRK11854        206 VKDVNVPDIG-GDE-----VEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE  279 (633)
T ss_pred             ceEEecCCCc-ccc-----eEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            3678999999 321     3457899999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q 024168          262 PS  263 (271)
Q Consensus       262 ~~  263 (271)
                      ..
T Consensus       280 ~~  281 (633)
T PRK11854        280 VE  281 (633)
T ss_pred             cC
Confidence            53

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=98.93  E-value=1.6e-09  Score=105.56  Aligned_cols=60  Identities=25%  Similarity=0.260  Sum_probs=57.5

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|+|++||.|++||+||.+|+||+.++|.|+++|+|.+|++++|+.|..|++|++|...
T Consensus        18 ~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~   77 (403)
T TIGR01347        18 AEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG   77 (403)
T ss_pred             EEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            359999999999999999999999999999999999999999999999999999999754

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.92  E-value=2.3e-09  Score=107.73  Aligned_cols=77  Identities=30%  Similarity=0.302  Sum_probs=71.4

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ...|+.|..|. +..    |....|++++||.|++||.|+.||+||+.++|+||++|+|.++++++|+.|..|++|+.|.
T Consensus       119 ~~~~~~P~~g~-~~e----g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~  193 (547)
T PRK11855        119 VVEVKVPDIGE-ITE----VEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE  193 (547)
T ss_pred             ceEEecCCCCC-cce----eEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            46899999999 754    3678999999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q 024168          262 PS  263 (271)
Q Consensus       262 ~~  263 (271)
                      ..
T Consensus       194 ~~  195 (547)
T PRK11855        194 VA  195 (547)
T ss_pred             cC
Confidence            54

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=98.91  E-value=2e-09  Score=109.96  Aligned_cols=74  Identities=22%  Similarity=0.238  Sum_probs=65.9

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .|+.|..| +. .    |....|+|++||.|++||+|++||+||+.++|+||++|+|.+|++++|+.|..|++|+.|+..
T Consensus         4 ~i~~P~lg-~~-e----g~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~   77 (633)
T PRK11854          4 EIKVPDIG-AD-E----VEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA   77 (633)
T ss_pred             eEeeCCCC-Cc-e----EEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence            46777777 32 1    245689999999999999999999999999999999999999999999999999999999875

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=98.88  E-value=4.4e-09  Score=106.86  Aligned_cols=77  Identities=17%  Similarity=0.212  Sum_probs=66.6

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+-|..|.-...    +....|+|++||.|++||.||.||+||+.++|.|+++|+|.+|+++.|+.|..|++|++|..
T Consensus       136 ~~~~~P~lg~~~~e----g~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~  211 (590)
T TIGR02927       136 TDIEMPELGESVTE----GTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGD  211 (590)
T ss_pred             eEEEcCCCCCCcce----EEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence            56888877742111    23457999999999999999999999999999999999999999999999999999999975


Q ss_pred             C
Q 024168          263 S  263 (271)
Q Consensus       263 ~  263 (271)
                      .
T Consensus       212 ~  212 (590)
T TIGR02927       212 A  212 (590)
T ss_pred             C
Confidence            3

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=98.85  E-value=2.1e-09  Score=102.76  Aligned_cols=60  Identities=28%  Similarity=0.320  Sum_probs=58.2

Q ss_pred             CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ...|..++||.|++++.||.||++|+..+|.||.+|+|+++||++||.|+.||.|+.|.+
T Consensus        89 l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~  148 (457)
T KOG0559|consen   89 LAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP  148 (457)
T ss_pred             HHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence            356999999999999999999999999999999999999999999999999999999998

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=98.72  E-value=2.8e-08  Score=97.22  Aligned_cols=59  Identities=31%  Similarity=0.344  Sum_probs=56.6

Q ss_pred             CCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          205 PPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       205 ~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .|+|++||.|++||+|+.+|+||+.+++.|+.+|+|.+++++.|+.|..|++|++|...
T Consensus        17 ~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~   75 (416)
T PLN02528         17 RWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVE   75 (416)
T ss_pred             EEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecc
Confidence            59999999999999999999999999999999999999999999999999999999643

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.71  E-value=8.2e-08  Score=67.54  Aligned_cols=56  Identities=34%  Similarity=0.475  Sum_probs=53.6

Q ss_pred             CCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          205 PPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       205 ~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      .|++..|+.|..|+.++.++++++..++.++.+|+|.+..+.+|+.+..|++|++|
T Consensus        19 ~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          19 EWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            47899999999999999999999999999999999999999999999999999875

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.70  E-value=2.2e-08  Score=100.77  Aligned_cols=73  Identities=32%  Similarity=0.298  Sum_probs=63.9

Q ss_pred             EeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          185 LESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       185 V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      |+.|..|. ...    |....|+|++||.|++||+||.||+||+..+|.|+++|+|.+++++.|+.|..|++|+.|.+
T Consensus         5 i~~p~~g~-~~~----g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~   77 (547)
T PRK11855          5 FKVPDIGE-VVE----VEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEA   77 (547)
T ss_pred             eecCCcCC-Cce----EEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecc
Confidence            55566665 322    24467999999999999999999999999999999999999999999999999999999974

>PRK01202 glycine cleavage system protein H; Provisional

Probab=98.70  E-value=3.5e-08  Score=82.10  Aligned_cols=57  Identities=25%  Similarity=0.437  Sum_probs=53.5

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      ++|+.|++||+++.||++|...+|.||++|+|+++   +.++.+.|.   ||+ +|++|++..+
T Consensus        46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~  109 (127)
T PRK01202         46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDE  109 (127)
T ss_pred             CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCH
Confidence            58999999999999999999999999999999999   899999999   987 9999998654

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.67  E-value=5.2e-08  Score=98.25  Aligned_cols=59  Identities=24%  Similarity=0.253  Sum_probs=56.9

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+|++||.|++||+|+.||+||+.++|.|+++|+|.+++++.|+.|..|++|++|..
T Consensus        17 ~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~   75 (546)
T TIGR01348        17 IEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV   75 (546)
T ss_pred             EEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence            35999999999999999999999999999999999999999999999999999999975

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.64  E-value=3.5e-08  Score=100.72  Aligned_cols=71  Identities=25%  Similarity=0.287  Sum_probs=65.9

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      -..|-|||.|++..          ..|++|+.|++||.||.+.+|||.+-|.||.+|+|+++.+.+|+.|+.|+.++.++
T Consensus      1106 ~g~igAPMpG~vie----------ikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1106 KGHIGAPMPGTVIE----------IKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred             cccccCCCCCceEE----------EEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence            35799999999864          56999999999999999999999999999999999999999999999999999886


Q ss_pred             c
Q 024168          262 P  262 (271)
Q Consensus       262 ~  262 (271)
                      +
T Consensus      1176 ~ 1176 (1176)
T KOG0369|consen 1176 H 1176 (1176)
T ss_pred             C
Confidence            4

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=98.57  E-value=1.1e-07  Score=95.84  Aligned_cols=76  Identities=25%  Similarity=0.335  Sum_probs=64.6

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~  261 (271)
                      ..|+-|..|.-...    +-...|++++||.|++||+||.||++|..++|.|+.+|+|.+|++++|+ .|..|++|+.+.
T Consensus       113 ~ei~mP~lg~~m~e----g~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~  188 (539)
T PLN02744        113 QEIGMPSLSPTMTE----GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITV  188 (539)
T ss_pred             ceEeCCCCCCCcce----eEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence            45777777742221    1346799999999999999999999999999999999999999999996 899999999885


Q ss_pred             c
Q 024168          262 P  262 (271)
Q Consensus       262 ~  262 (271)
                      .
T Consensus       189 ~  189 (539)
T PLN02744        189 E  189 (539)
T ss_pred             c
Confidence            4

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=98.57  E-value=1.4e-07  Score=91.61  Aligned_cols=60  Identities=33%  Similarity=0.405  Sum_probs=57.3

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|++++||.|++||+|+.||++|+..+|.||.+|+|.+++++.|+.|..|++|+.|...
T Consensus        20 ~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~   79 (411)
T PRK11856         20 VEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE   79 (411)
T ss_pred             EEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecC
Confidence            469999999999999999999999999999999999999999999999999999999753

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.56  E-value=1.9e-07  Score=76.13  Aligned_cols=57  Identities=28%  Similarity=0.444  Sum_probs=50.9

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      ++|+.|++||.++.||++|...+|.||++|+|+++   +.++-+.+.   ||+ +|++|++..+
T Consensus        39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~~~~~  102 (110)
T TIGR03077        39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLDED  102 (110)
T ss_pred             CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECCH
Confidence            77999999999999999999999999999999999   677777764   776 9999997654

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.53  E-value=7e-08  Score=95.99  Aligned_cols=69  Identities=23%  Similarity=0.316  Sum_probs=64.9

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..+.+||.|.+.          +.+|+.||.|++||.++.+++|||.+-++||.+|+|..+.++.|+.|.-|.+|++++
T Consensus       602 ~v~~aPMpG~Ie----------kv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  602 GVIVAPMPGIIE----------KVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             CceecCCCCeee----------eeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            468999999874          589999999999999999999999999999999999999999999999999999863

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.52  E-value=1.6e-07  Score=92.30  Aligned_cols=59  Identities=27%  Similarity=0.334  Sum_probs=56.6

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCc-ccCCCeEEEEec
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDP-IGYGDPLIVILP  262 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~-V~~Gq~L~~I~~  262 (271)
                      ..|++++||.|++||+||.||++|+.++|.|+.+|+|.+|+++.|+. |..|++|+.|..
T Consensus        17 ~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~   76 (435)
T TIGR01349        17 AKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVE   76 (435)
T ss_pred             EEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEec
Confidence            46999999999999999999999999999999999999999999999 999999999964

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=98.48  E-value=2.2e-07  Score=92.26  Aligned_cols=62  Identities=27%  Similarity=0.302  Sum_probs=57.7

Q ss_pred             CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEecCC
Q 024168          203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVILPSF  264 (271)
Q Consensus       203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~~~~  264 (271)
                      ...|++++||.|++||+|+.||++|+..+|.|+.+|+|.+|+++.|+ .|..|++|+.|..+.
T Consensus        19 i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~   81 (464)
T PRK11892         19 LAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG   81 (464)
T ss_pred             EEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence            35799999999999999999999999999999999999999999995 799999999997543

>PRK00624 glycine cleavage system protein H; Provisional

Probab=98.48  E-value=4.2e-07  Score=74.62  Aligned_cols=57  Identities=28%  Similarity=0.402  Sum_probs=51.6

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      ++|+.|++||.||.||++|...+|.||++|+|+++   +.++-+.+.   ||+ +|++|++..+
T Consensus        41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~~  104 (114)
T PRK00624         41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDED  104 (114)
T ss_pred             CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECCh
Confidence            77999999999999999999999999999999999   777777765   777 9999998664

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=98.47  E-value=2e-07  Score=94.89  Aligned_cols=75  Identities=21%  Similarity=0.221  Sum_probs=63.3

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .|+.|..|.-...    +....|+|++||.|+.||+||.||+||+.++|.|+.+|+|.+|+++.|+.|..|+.|+.|..
T Consensus         4 ~i~~P~lg~~~~e----g~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~   78 (590)
T TIGR02927         4 SVEMPALGESVTE----GTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE   78 (590)
T ss_pred             eEECCCCCCCccE----EEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence            3556666631111    12357999999999999999999999999999999999999999999999999999998864

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=98.33  E-value=6.1e-07  Score=88.27  Aligned_cols=67  Identities=24%  Similarity=0.328  Sum_probs=63.2

Q ss_pred             CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCC-CcccCCCeEEEEecCCCCCCC
Q 024168          203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDG-DPIGYGDPLIVILPSFPGIKL  269 (271)
Q Consensus       203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~G-d~V~~Gq~L~~I~~~~~~~~~  269 (271)
                      ...|..++||.+.+||+||.||++|..+++++..+|.+.+||++.| .-|..|.+|+.|-+...+|+.
T Consensus        55 IvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e~di~~  122 (470)
T KOG0557|consen   55 IVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDEDDIAA  122 (470)
T ss_pred             eeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEecccccHHH
Confidence            3569999999999999999999999999999999999999999999 889999999999999988874

>TIGR00527 gcvH glycine cleavage system H protein

Probab=98.31  E-value=1.4e-06  Score=72.48  Aligned_cols=64  Identities=17%  Similarity=0.177  Sum_probs=51.0

Q ss_pred             CCCCCcc---CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCC
Q 024168          202 KRAPPSC---KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       202 P~~~~~V---~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      .+.-.||   ++|+.|++||++|.||+||+..+|.||++|+|+++.   .++-+.+.   |++ +|++|++..+
T Consensus        35 lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~~  108 (127)
T TIGR00527        35 LGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSDE  108 (127)
T ss_pred             CCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCCH
Confidence            3444556   489999999999999999999999999999999994   33333433   555 9999998654

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK13380 glycine cleavage system protein H; Provisional

Probab=98.18  E-value=3.7e-06  Score=71.59  Aligned_cols=57  Identities=19%  Similarity=0.371  Sum_probs=48.1

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecC---CCCccc---CCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRK---DGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~---~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      ++|+.|++||.++.||+||+..+|.||++|+|+++..+   +-+.+.   ||+ +|++|++.++
T Consensus        53 ~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d~  116 (144)
T PRK13380         53 ELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWFFRFKPANP  116 (144)
T ss_pred             CCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeEEEEEECCH
Confidence            58999999999999999999999999999999999644   333333   665 9999998764

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=98.08  E-value=2.1e-05  Score=76.56  Aligned_cols=74  Identities=14%  Similarity=0.159  Sum_probs=62.2

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCc-cCCCCeEecCCeEEEEEec---------------------------------
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPS-CKEKQTVREGQVLCYIEQL---------------------------------  226 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~-V~~Gd~V~~Gq~l~~IEam---------------------------------  226 (271)
                      ....|.++..|.+.+          .+ +++||.|++||+|+.|++-                                 
T Consensus       122 ~~~~v~arv~G~V~~----------l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~  191 (409)
T PRK09783        122 QYAIVQARAAGFIDK----------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAG  191 (409)
T ss_pred             ceEEEeCCcCEEEEE----------EEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Confidence            346899999998854          45 8999999999999999821                                 


Q ss_pred             ---------------CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          227 ---------------GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       227 ---------------K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                                     .....|+||++|+|.+..++.|+.|..|++||+|...+
T Consensus       192 i~~~~i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~  244 (409)
T PRK09783        192 MPEADIRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD  244 (409)
T ss_pred             CCHHHHHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence                           11247999999999999999999999999999997544

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.07  E-value=7.3e-06  Score=64.55  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=44.0

Q ss_pred             cCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC
Q 024168          189 KVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD  249 (271)
Q Consensus       189 ~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd  249 (271)
                      +.|.++.-         ++.++|+.|++||.++.||++|...+|.||++|+|+++..+-++
T Consensus        27 ~lG~i~~i---------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~   78 (96)
T cd06848          27 LLGDIVFV---------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD   78 (96)
T ss_pred             hCCCEEEE---------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence            56766542         46778999999999999999999999999999999999755443

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=98.01  E-value=1.8e-05  Score=73.52  Aligned_cols=36  Identities=22%  Similarity=0.425  Sum_probs=32.7

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFP  265 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~  265 (271)
                      ..|+||++|+|..+.++.|+.|..|++|+.|.+...
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~  240 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQ  240 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCc
Confidence            369999999999999999999999999999987543

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=97.94  E-value=1.7e-05  Score=66.60  Aligned_cols=58  Identities=22%  Similarity=0.450  Sum_probs=50.8

Q ss_pred             cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168          208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      -++|+.|++|+.++.||+.|.-.+|+||++|+|+++   +.++-+.|+   ||. +||.|++.++
T Consensus        47 pe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~klk~~d~  111 (131)
T COG0509          47 PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKLKPADP  111 (131)
T ss_pred             CCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhcChhhhccCCCCCceEEEEeeCCh
Confidence            378999999999999999999999999999999999   455555665   886 9999999875

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=97.92  E-value=2.6e-05  Score=71.26  Aligned_cols=73  Identities=23%  Similarity=0.229  Sum_probs=62.0

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG---------------------------------  228 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~---------------------------------  228 (271)
                      ...|.+|..|.+.          ..+|++||.|++||+|+.|+.-..                                 
T Consensus        26 ~~~v~a~~~G~V~----------~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~   95 (322)
T TIGR01730        26 EADLAAEVAGKIT----------KISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVK   95 (322)
T ss_pred             EEEEEccccEEEE----------EEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3679999999985          367999999999999999974211                                 


Q ss_pred             --------------------------------------eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          229 --------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       229 --------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                                                            ...|+||++|+|..+.++.|+.|..|++|+.|....
T Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~  169 (322)
T TIGR01730        96 RNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD  169 (322)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence                                                  235999999999999999999999999999997544

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=97.90  E-value=5.7e-06  Score=79.41  Aligned_cols=62  Identities=26%  Similarity=0.257  Sum_probs=58.7

Q ss_pred             CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      ..+|||++||.|++=|.||.++++|....|.+-++|.|.+|.-+.+|....|++|+.++.+.
T Consensus        81 vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~  142 (474)
T KOG0558|consen   81 VKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVED  142 (474)
T ss_pred             eeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeecc
Confidence            46899999999999999999999999999999999999999999999999999999987543

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.85  E-value=5.1e-05  Score=71.64  Aligned_cols=34  Identities=12%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             eeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      .|+||++|+|.++.++.|+.|..|++|+.|.+.+
T Consensus       210 ~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~  243 (346)
T PRK10476        210 TVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD  243 (346)
T ss_pred             EEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence            6899999999999999999999999999998764

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=97.81  E-value=9.3e-05  Score=68.52  Aligned_cols=67  Identities=18%  Similarity=0.276  Sum_probs=59.1

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ...|+||..|.|+.           +++.||.|++||+|++|..    .+|+||.+|+|.-+ +.||-.|..|.-|..|-
T Consensus       164 Er~IrAp~~Gi~~~-----------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dID  227 (256)
T TIGR03309       164 ERVLRAPADGIVTP-----------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVD  227 (256)
T ss_pred             eEEEECCCCeEEee-----------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEEC
Confidence            36899999999963           5899999999999999975    79999999988765 58999999999999998


Q ss_pred             cCC
Q 024168          262 PSF  264 (271)
Q Consensus       262 ~~~  264 (271)
                      |..
T Consensus       228 PR~  230 (256)
T TIGR03309       228 PRG  230 (256)
T ss_pred             CCC
Confidence            753

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.73  E-value=9.6e-05  Score=69.38  Aligned_cols=72  Identities=22%  Similarity=0.292  Sum_probs=61.4

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG---------------------------------  228 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~---------------------------------  228 (271)
                      ...|.++..|.+.          ..+|++||.|++||+|+.|+.-..                                 
T Consensus        47 ~v~i~~~v~G~V~----------~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~  116 (310)
T PRK10559         47 VVAIAPDVSGLIT----------QVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGV  116 (310)
T ss_pred             EEEEccCCceEEE----------EEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4679999999885          367999999999999999985210                                 


Q ss_pred             -------------------------------------eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          229 -------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       229 -------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                                                           ...|+||++|+|.++.++.|+.|..|++|+.|-..
T Consensus       117 ~aiS~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~  188 (310)
T PRK10559        117 QAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ  188 (310)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence                                                 23699999999999999999999999999988654

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.69  E-value=0.00012  Score=70.88  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             eeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      .|+||++|+|..+.++.|+.|..|++||.|.+..
T Consensus       217 ~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~  250 (390)
T PRK15136        217 KIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT  250 (390)
T ss_pred             EEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence            6999999999999999999999999999998754

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.68  E-value=0.00012  Score=70.14  Aligned_cols=72  Identities=21%  Similarity=0.292  Sum_probs=60.0

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG---------------------------------  228 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~---------------------------------  228 (271)
                      ...|.+++.|.+..          .+|++||.|++||+|+.|+.-..                                 
T Consensus        63 ~~~l~~~v~G~V~~----------v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~  132 (385)
T PRK09578         63 QAEVRARVAGIVTA----------RTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVR  132 (385)
T ss_pred             EEEEeccCcEEEEE----------EECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999998853          57999999999999999985311                                 


Q ss_pred             --------------------------------------eeeeecCCCeEEEEEecCCCCcccCC--CeEEEEecC
Q 024168          229 --------------------------------------EIPIESDIAGEVIKILRKDGDPIGYG--DPLIVILPS  263 (271)
Q Consensus       229 --------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~G--q~L~~I~~~  263 (271)
                                                            ...|+||++|+|.+.+++.|+.|..|  ++|+.|...
T Consensus       133 ~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~  207 (385)
T PRK09578        133 DRAVSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL  207 (385)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence                                                  13699999999999999999999885  589988643

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.66  E-value=0.00012  Score=68.52  Aligned_cols=35  Identities=9%  Similarity=0.160  Sum_probs=32.0

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      ..|+||++|+|..+.++.|+.|..|++|+.|.+..
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~  238 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTR  238 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCC
Confidence            37999999999999999999999999999997653

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.63  E-value=0.0001  Score=51.71  Aligned_cols=35  Identities=26%  Similarity=0.480  Sum_probs=32.1

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      ..|.++++|+|.++++++|+.|..||+|+++....
T Consensus         3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD   37 (50)
T ss_pred             EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence            46899999999999999999999999999998643

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=97.61  E-value=0.0001  Score=80.84  Aligned_cols=73  Identities=23%  Similarity=0.379  Sum_probs=65.5

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      -..++||..|.+.+          +.|+.|+.|.+||+-+.||.|||.+++.|..+|+|. .+.+.|+.++.|+.|+++.
T Consensus       685 pt~LrsPs~GKLl~----------ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~~i~aG~vlakL~  753 (2196)
T KOG0368|consen  685 PTVLRSPSPGKLLQ----------YLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGDAIEAGSVLAKLT  753 (2196)
T ss_pred             cceecCCCCccceE----------EEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCCccCccceeEEee
Confidence            35789999999864          789999999999999999999999999999999876 5579999999999999998


Q ss_pred             cCCC
Q 024168          262 PSFP  265 (271)
Q Consensus       262 ~~~~  265 (271)
                      -++|
T Consensus       754 lDdp  757 (2196)
T KOG0368|consen  754 LDDP  757 (2196)
T ss_pred             cCCh
Confidence            6654

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.56  E-value=0.00021  Score=59.05  Aligned_cols=58  Identities=24%  Similarity=0.327  Sum_probs=44.6

Q ss_pred             cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---C-CCeEEEEecCCC
Q 024168          208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---Y-GDPLIVILPSFP  265 (271)
Q Consensus       208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~-Gq~L~~I~~~~~  265 (271)
                      -++|+.|++|++++.||+.|...++.||++|+|+++.   .++-+.+.   | ..+|+.|++.++
T Consensus        39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~~d~  103 (122)
T PF01597_consen   39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKPSDP  103 (122)
T ss_dssp             B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEESCG
T ss_pred             ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChHHhccCCCCCCeEEEEEeCCH
Confidence            3779999999999999999999999999999999994   44444432   5 448999998665

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.50  E-value=0.00034  Score=67.16  Aligned_cols=71  Identities=17%  Similarity=0.159  Sum_probs=59.5

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC----------------------------------
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG----------------------------------  227 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK----------------------------------  227 (271)
                      ...|.++..|.+..          .++++||.|++||+|+.|+.-.                                  
T Consensus        61 ~~~l~~~v~G~V~~----------i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~  130 (385)
T PRK09859         61 VAEIRPQVGGIIIK----------RNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLK  130 (385)
T ss_pred             EEEEeccCcEEEEE----------EEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46799999998853          5799999999999999998420                                  


Q ss_pred             -------------------------------------eeeeeecCCCeEEEEEecCCCCcccCCC--eEEEEec
Q 024168          228 -------------------------------------GEIPIESDIAGEVIKILRKDGDPIGYGD--PLIVILP  262 (271)
Q Consensus       228 -------------------------------------~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq--~L~~I~~  262 (271)
                                                           -...|+||++|+|.+..++.|+.|..|+  +||.|..
T Consensus       131 ~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~  204 (385)
T PRK09859        131 TNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQR  204 (385)
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEe
Confidence                                                 1247999999999999999999999985  6888754

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.49  E-value=0.00054  Score=64.34  Aligned_cols=66  Identities=17%  Similarity=0.172  Sum_probs=56.1

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec---CeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL---GGEIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam---K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                      ...|+||..|.|+           +.++.||.|++||+|+.|-..   ....+|+||.+|+|.-+.  ..-.|..|++|+
T Consensus       229 ~~~v~A~~~Gl~~-----------~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~  295 (298)
T cd06253         229 VVYVNAETSGIFV-----------PAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVA  295 (298)
T ss_pred             eEEEEcCCCeEEE-----------ECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEE
Confidence            5789999999997           358999999999999988652   346789999999998875  556899999999


Q ss_pred             EE
Q 024168          259 VI  260 (271)
Q Consensus       259 ~I  260 (271)
                      .|
T Consensus       296 ~i  297 (298)
T cd06253         296 RI  297 (298)
T ss_pred             Ee
Confidence            87

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.48  E-value=0.00035  Score=67.50  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=59.4

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG---------------------------------  228 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~---------------------------------  228 (271)
                      ...|.++..|.+..          .+|++||.|++||+|+.|+.-..                                 
T Consensus        65 ~~~l~a~vsG~V~~----------v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~  134 (397)
T PRK15030         65 IAEVRPQVSGIILK----------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG  134 (397)
T ss_pred             EEEEEecCcEEEEE----------EEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999998853          57999999999999999984211                                 


Q ss_pred             --------------------------------------eeeeecCCCeEEEEEecCCCCcccCCCe--EEEEecC
Q 024168          229 --------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGDP--LIVILPS  263 (271)
Q Consensus       229 --------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~--L~~I~~~  263 (271)
                                                            ...|+||++|+|.++.++.|+.|..|++  ||.|...
T Consensus       135 ~g~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~  209 (397)
T PRK15030        135 TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL  209 (397)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEec
Confidence                                                  1359999999999999999999999985  7777543

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.41  E-value=0.0009  Score=63.15  Aligned_cols=68  Identities=22%  Similarity=0.216  Sum_probs=56.2

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec----CeeeeeecCCCeEEEEEecCCCCcccCCCeE
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL----GGEIPIESDIAGEVIKILRKDGDPIGYGDPL  257 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam----K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L  257 (271)
                      ...|+||..|.|+           ++++.||.|++||+|+.|-..    ....+|+||.+|+|.-+.  ..-.|..|++|
T Consensus       244 ~~~v~A~~~G~~~-----------~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l  310 (316)
T cd06252         244 RCYVFAPHPGLFE-----------PLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCL  310 (316)
T ss_pred             cEEEEcCCCeEEE-----------EecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEE
Confidence            4679999999997           468999999999999998764    345689999999998664  33569999999


Q ss_pred             EEEec
Q 024168          258 IVILP  262 (271)
Q Consensus       258 ~~I~~  262 (271)
                      +.|..
T Consensus       311 ~~i~~  315 (316)
T cd06252         311 AVLAA  315 (316)
T ss_pred             EEEec
Confidence            98854

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.34  E-value=0.00054  Score=65.30  Aligned_cols=72  Identities=19%  Similarity=0.221  Sum_probs=59.2

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG---------------------------------  228 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~---------------------------------  228 (271)
                      ...|.+|..|.+..          +++++||.|++||+|+.|+.-..                                 
T Consensus        61 ~~~l~a~~~G~V~~----------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~  130 (370)
T PRK11578         61 KVDVGAQVSGQLKT----------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLS  130 (370)
T ss_pred             EEEEecccceEEEE----------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999998853          67999999999999999986310                                 


Q ss_pred             ----------------------------------------------------eeeeecCCCeEEEEEecCCCCcccCCC-
Q 024168          229 ----------------------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGD-  255 (271)
Q Consensus       229 ----------------------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq-  255 (271)
                                                                          ...|+||++|+|..+.++.|+.|..|+ 
T Consensus       131 r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~  210 (370)
T PRK11578        131 RQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQ  210 (370)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccC
Confidence                                                                126999999999999999999998764 


Q ss_pred             --eEEEEecC
Q 024168          256 --PLIVILPS  263 (271)
Q Consensus       256 --~L~~I~~~  263 (271)
                        +|+.|...
T Consensus       211 ~~~l~~i~~~  220 (370)
T PRK11578        211 APNILTLADM  220 (370)
T ss_pred             CceEEEEecC
Confidence              78887543

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.27  E-value=0.0007  Score=66.05  Aligned_cols=73  Identities=26%  Similarity=0.263  Sum_probs=59.9

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe--------------------------------
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG--------------------------------  228 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~--------------------------------  228 (271)
                      +...|.++..|.+..          .++++||.|++||+|+.|+....                                
T Consensus        86 ~~v~v~~~vsG~V~~----------i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~  155 (415)
T PRK11556         86 NTVTVRSRVDGQLMA----------LHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLA  155 (415)
T ss_pred             eEEEEEccccEEEEE----------EECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999998853          57999999999999999964210                                


Q ss_pred             ---------------------------------------eeeeecCCCeEEEEEecCCCCcccCCC--eEEEEecC
Q 024168          229 ---------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGD--PLIVILPS  263 (271)
Q Consensus       229 ---------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq--~L~~I~~~  263 (271)
                                                             ...|+||++|+|..+.++.|+.|..|+  +|+.|...
T Consensus       156 ~~g~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~  231 (415)
T PRK11556        156 KTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQT  231 (415)
T ss_pred             hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecC
Confidence                                                   237999999999999999999999984  78877543

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.27  E-value=0.0014  Score=61.10  Aligned_cols=65  Identities=28%  Similarity=0.363  Sum_probs=53.2

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec--CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL--GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam--K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      ..|+||..|.|+.           .++.||.|++||+|+.|...  ....+|+||.+|+|..+.  ..-.|..|+.|+.|
T Consensus       220 ~~v~A~~~G~~~~-----------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i  286 (287)
T cd06251         220 VWVRAPQGGLLRS-----------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI  286 (287)
T ss_pred             eEEecCCCeEEEE-----------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence            5799999999963           58999999999999999642  223689999999996654  55578899999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=97.20  E-value=0.00042  Score=55.71  Aligned_cols=41  Identities=29%  Similarity=0.386  Sum_probs=36.4

Q ss_pred             CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe
Q 024168          203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL  244 (271)
Q Consensus       203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il  244 (271)
                      -..+.|++||.|++||.|+..+. -+..+|.|+++|+|+.|.
T Consensus        41 ~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   41 PAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             cceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence            35789999999999999999985 556799999999999984

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=97.20  E-value=0.0005  Score=63.00  Aligned_cols=33  Identities=30%  Similarity=0.456  Sum_probs=23.8

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEE
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIE  224 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IE  224 (271)
                      +...|.+|..|.+ .          ++|++||.|++||+|+.|+
T Consensus        20 ~~~~v~~~~~G~v-~----------~~v~~G~~V~kG~~L~~ld   52 (328)
T PF12700_consen   20 NEVSVSAPVSGRV-S----------VNVKEGDKVKKGQVLAELD   52 (328)
T ss_dssp             SEEEE--SS-EEE-E----------E-S-TTSEEETT-EEEEEE
T ss_pred             EEEEEECCCCEEE-E----------EEeCCcCEECCCCEEEEEE
Confidence            4478999999998 4          6799999999999999998

...

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=97.13  E-value=0.00077  Score=50.02  Aligned_cols=34  Identities=26%  Similarity=0.603  Sum_probs=31.1

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      -.|+||++|+|.+++++.||.|+.||+|+.++..
T Consensus         3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~   36 (71)
T PRK05889          3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESM   36 (71)
T ss_pred             cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEec
Confidence            4699999999999999999999999999988753

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=97.11  E-value=0.019  Score=53.77  Aligned_cols=32  Identities=28%  Similarity=0.480  Sum_probs=29.5

Q ss_pred             eeecCCCeEEEE-------EecCCCCcccCCCeEEEEec
Q 024168          231 PIESDIAGEVIK-------ILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       231 ~V~Ap~~G~V~~-------Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .|.||+.|+|.+       ++++.||.|+.||+|+.|+.
T Consensus       199 ~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEA  237 (274)
T PLN02983        199 PLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEA  237 (274)
T ss_pred             eEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEe
Confidence            389999999999       59999999999999999984

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=97.10  E-value=0.002  Score=61.49  Aligned_cols=65  Identities=15%  Similarity=0.172  Sum_probs=54.2

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC----eeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG----GEIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK----~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                      ..|+||..|.|+           +.++.||.|++||+|+.|-...    ...+|+||.+|+|..+.  ..-.|..|+.|+
T Consensus       256 ~~v~Ap~~Gi~~-----------~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~  322 (325)
T TIGR02994       256 CFIFAEDDGLIE-----------FMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIA  322 (325)
T ss_pred             eEEEcCCCeEEE-----------EecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEE
Confidence            579999999997           3589999999999999987532    35689999999999864  456788899888


Q ss_pred             EE
Q 024168          259 VI  260 (271)
Q Consensus       259 ~I  260 (271)
                      .|
T Consensus       323 ~i  324 (325)
T TIGR02994       323 VL  324 (325)
T ss_pred             Ee
Confidence            76

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.04  E-value=0.00088  Score=46.92  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCee
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGE  229 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~  229 (271)
                      ..|.+|..|.+.          .++|++||.|++||+|+.|+.....
T Consensus         3 ~~I~~~~~G~V~----------~v~V~~G~~VkkGd~L~~ld~~~~~   39 (50)
T PF13533_consen    3 VTIQAPVSGRVE----------SVYVKEGQQVKKGDVLLVLDSPDLQ   39 (50)
T ss_pred             EEEeCCCCEEEE----------EEEecCCCEEcCCCEEEEECcHHHH
Confidence            468999999885          4789999999999999999865543

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.02  E-value=0.0024  Score=59.47  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=29.5

Q ss_pred             eeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      .|+||++|+|..+.+..|+.|.. ++||.|.+..
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~  238 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS  238 (327)
T ss_pred             EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence            57899999999999999999986 8999988754

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.01  E-value=0.0024  Score=59.45  Aligned_cols=65  Identities=26%  Similarity=0.386  Sum_probs=51.0

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe--cCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ--LGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa--mK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                      +...++||..|.|+           ++++.||.|++||+|+.|-.  .....+|+||.+|.|.-+..  .-.|..|++|+
T Consensus       222 ~~~~v~Ap~~G~~~-----------~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~v~~G~~l~  288 (288)
T cd06254         222 DVYYVTSPASGLWY-----------PFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLPVRKGDPLA  288 (288)
T ss_pred             CCEEEecCCCeEEE-----------EecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCccCCCCccC
Confidence            44789999999996           46899999999999998843  23456899999999998753  34566676653

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=96.95  E-value=0.0033  Score=60.68  Aligned_cols=67  Identities=24%  Similarity=0.219  Sum_probs=53.5

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC-e-eee--eecCCCeEEEEEecCCCCcccCCCe
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG-G-EIP--IESDIAGEVIKILRKDGDPIGYGDP  256 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK-~-~~~--V~Ap~~G~V~~Ilv~~Gd~V~~Gq~  256 (271)
                      +...|+||..|.|+           +.++.||.|++||+|+.|-..- - ..+  |+||.+|+|.-+.  ..-.|..|++
T Consensus       288 ~~~~v~Ap~~Gl~~-----------~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~  354 (359)
T cd06250         288 GVEMLYAPAGGMVV-----------YRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDE  354 (359)
T ss_pred             CcEEEeCCCCeEEE-----------EecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCe
Confidence            45689999999997           4589999999999999885321 1 123  5999999998765  6668999999


Q ss_pred             EEEE
Q 024168          257 LIVI  260 (271)
Q Consensus       257 L~~I  260 (271)
                      |+.|
T Consensus       355 l~~I  358 (359)
T cd06250         355 LAKI  358 (359)
T ss_pred             EEEe
Confidence            9986

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>PRK12784 hypothetical protein; Provisional

Probab=96.82  E-value=0.0029  Score=49.00  Aligned_cols=71  Identities=20%  Similarity=0.157  Sum_probs=63.7

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeee-eeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEI-PIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~-~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..|.||.-|.+.          +.|+.+++.|-+.+.|..|+.|.... .|.-.++|.|.-+.|+.||.|..++.|+.++
T Consensus         6 e~iyS~~~G~Ve----------kifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e   75 (84)
T PRK12784          6 EEICSSYEGKVE----------EIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE   75 (84)
T ss_pred             hhhcCccccEEE----------EEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence            458999999884          57999999999999999999887665 5888999999999999999999999999998


Q ss_pred             cC
Q 024168          262 PS  263 (271)
Q Consensus       262 ~~  263 (271)
                      .+
T Consensus        76 dD   77 (84)
T PRK12784         76 DD   77 (84)
T ss_pred             ec
Confidence            64

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=96.79  E-value=0.0023  Score=47.09  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.7

Q ss_pred             eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      |..|.||++|+|.+++++.||.|+.||+|+.++.
T Consensus         1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~   34 (70)
T PRK08225          1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILES   34 (70)
T ss_pred             CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            4579999999999999999999999999999875

>PRK06748 hypothetical protein; Validated

Probab=96.73  E-value=0.0031  Score=49.17  Aligned_cols=34  Identities=18%  Similarity=0.101  Sum_probs=31.8

Q ss_pred             eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..-|+||+.|+|.+++++.||.|+.||+|+.|+.
T Consensus         4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET   37 (83)
T PRK06748          4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIET   37 (83)
T ss_pred             eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            3468999999999999999999999999999987

>COG3608 Predicted deacylase [General function prediction only]

Probab=96.52  E-value=0.0043  Score=59.53  Aligned_cols=66  Identities=24%  Similarity=0.289  Sum_probs=50.5

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec---CeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL---GGEIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam---K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                      ..-|.||..|.|.           +.|+.||.|++||+|++|-.+   ....||+|+++|+|..+.  .--.|..|+.|+
T Consensus       256 ~~~i~Ap~~G~v~-----------~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~  322 (331)
T COG3608         256 DEMIRAPAGGLVE-----------FLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLK  322 (331)
T ss_pred             cceeecCCCceEE-----------EeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeee
Confidence            3468999999884           469999999999999999887   566799999999999874  222444445444


Q ss_pred             EE
Q 024168          259 VI  260 (271)
Q Consensus       259 ~I  260 (271)
                      .+
T Consensus       323 ~v  324 (331)
T COG3608         323 VV  324 (331)
T ss_pred             ee
Confidence            44

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.41  E-value=0.0035  Score=54.58  Aligned_cols=57  Identities=23%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc----CCCeEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG----YGDPLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~----~Gq~L~~I~~~~~  265 (271)
                      ++|..|.+|+-+|-+|..|...+|.+|++|+|++|.   .++-..|.    .+-+|+.++..++
T Consensus        89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~EnPGlvN~Sp~e~GWl~k~kls~~  152 (172)
T KOG3373|consen   89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEENPGLVNESPEEDGWLIKMKLSSP  152 (172)
T ss_pred             CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccCCCcccCCcccCceEEEEEeCCH
Confidence            679999999999999999999999999999999994   55555665    4569999998766

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=96.38  E-value=0.0054  Score=43.32  Aligned_cols=31  Identities=35%  Similarity=0.712  Sum_probs=29.5

Q ss_pred             eecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          232 IESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       232 V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      |+||++|+|.+++++.|+.|+.||+|+.++.
T Consensus         2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~   32 (67)
T cd06850           2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA   32 (67)
T ss_pred             ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            7899999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=96.07  E-value=0.0083  Score=50.63  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=32.1

Q ss_pred             eeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          228 GEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       228 ~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      -...|+||..|++.+++|+.||.|..||.|+.|+.
T Consensus        69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA  103 (140)
T COG0511          69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA  103 (140)
T ss_pred             cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence            34679999999999999999999999999999883

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.91  E-value=0.013  Score=49.35  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=31.1

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+||++|+|.++++++||.|+.||+|+.++.
T Consensus        62 ~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEa   94 (130)
T PRK06549         62 DAMPSPMPGTILKVLVAVGDQVTENQPLLILEA   94 (130)
T ss_pred             cEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence            468999999999999999999999999999985

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=95.86  E-value=0.011  Score=44.22  Aligned_cols=33  Identities=36%  Similarity=0.600  Sum_probs=28.9

Q ss_pred             eeeecCCCeEEEE------EecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIK------ILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~------Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .+|++|..|.+.+      +++++|+.|+.||+|+.|+.
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet   39 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIET   39 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEES
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEc
Confidence            3688888887666      99999999999999999985

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PF13437 HlyD_3: HlyD family secretion protein

Probab=95.73  E-value=0.018  Score=44.82  Aligned_cols=33  Identities=27%  Similarity=0.491  Sum_probs=30.9

Q ss_pred             eeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .|+||++|+|..+.++.|+.|..|++|+.|.+.
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            489999999999999999999999999999875

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.59  E-value=0.045  Score=51.24  Aligned_cols=51  Identities=25%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC--eeeeeecCCCeEEEEE
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG--GEIPIESDIAGEVIKI  243 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK--~~~~V~Ap~~G~V~~I  243 (271)
                      ...|+||..|.|+           +.++.|+.|++||+|+.|-..=  ...+++||.+|+|.-+
T Consensus       231 ~~~v~Ap~~Gi~~-----------~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         231 RDWVAAIHGGLFE-----------PSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             eEEEecCCCeEEE-----------EecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            4689999999997           3589999999999999886321  2346999999999987

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=95.52  E-value=0.022  Score=53.79  Aligned_cols=41  Identities=22%  Similarity=0.490  Sum_probs=36.4

Q ss_pred             EEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          221 CYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       221 ~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ++|++.  ...|.++++|+|.++++++||.|..||+|++|.+.
T Consensus        42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~   82 (346)
T PRK10476         42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR   82 (346)
T ss_pred             eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence            666654  57899999999999999999999999999999864

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=95.45  E-value=0.052  Score=47.56  Aligned_cols=66  Identities=17%  Similarity=0.231  Sum_probs=49.6

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVI-----------------  241 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~-----------------  241 (271)
                      ..|.||..|.+..           .-++-|.|=+    |+-+++.=.   ...|.||++|+|.                 
T Consensus        21 ~~i~aP~~G~vi~-----------L~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~   86 (169)
T PRK09439         21 IEIIAPLSGEIVN-----------IEDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGV   86 (169)
T ss_pred             eEEEecCCeEEEE-----------hHHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCc
Confidence            5699999999863           3345555533    677776543   3689999999998                 


Q ss_pred             ------------------EEecCCCCcccCCCeEEEEec
Q 024168          242 ------------------KILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       242 ------------------~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                                        +.+++.||.|..||+|+++-.
T Consensus        87 eiLIHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~  125 (169)
T PRK09439         87 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDL  125 (169)
T ss_pred             EEEEEEeecccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence                              446889999999999998853

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.44  E-value=0.022  Score=49.03  Aligned_cols=34  Identities=18%  Similarity=0.514  Sum_probs=31.2

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|.||.+|+|.++++++||.|+.||+|+.++..
T Consensus        85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam  118 (153)
T PRK05641         85 NVVTAPMPGKILRILVREGQQVKVGQGLLILEAM  118 (153)
T ss_pred             CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec
Confidence            5689999999999999999999999999998743

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=95.38  E-value=0.023  Score=56.59  Aligned_cols=41  Identities=24%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR  245 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv  245 (271)
                      ..+.|++||.|++||.|+.-+.. ...++.||++|+|++|..
T Consensus        41 ~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        41 PKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            35889999999999999987644 468999999999999954

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=95.08  E-value=0.024  Score=52.75  Aligned_cols=35  Identities=29%  Similarity=0.543  Sum_probs=32.5

Q ss_pred             eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ...|.|+++|+|.+++++.||.|..||+|++|.+.
T Consensus        42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~   76 (334)
T TIGR00998        42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT   76 (334)
T ss_pred             eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence            46899999999999999999999999999999754

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.06  E-value=0.036  Score=52.71  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=38.2

Q ss_pred             EEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          221 CYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       221 ~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      |.|...+....|.++.+|+|.+++|++||.|..|++|+.+....
T Consensus        35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~   78 (423)
T TIGR01843        35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD   78 (423)
T ss_pred             eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence            45566666677999999999999999999999999999997654

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=95.02  E-value=0.064  Score=49.16  Aligned_cols=67  Identities=24%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeE--EEEEecC--eeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVL--CYIEQLG--GEIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l--~~IEamK--~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                      ..+.||..|.|+           +.++.||.|++||+|  +.+-..-  ...+|+||.+|+|.-+.  ..-.|..|+.|+
T Consensus       221 ~~~~a~~~G~~~-----------~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~~--~~~~v~~G~~l~  287 (292)
T PF04952_consen  221 EWVRAPAGGLFE-----------PEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFIR--ESPYVEQGDALA  287 (292)
T ss_dssp             CEEESSSSEEEE-----------ETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESEC--TSSECTTTEEEE
T ss_pred             eeecCCccEEEE-----------EeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEeC--cccccCCCCeEE
Confidence            579999999996           358999999999999  6544322  33589999999998664  667899999999


Q ss_pred             EEec
Q 024168          259 VILP  262 (271)
Q Consensus       259 ~I~~  262 (271)
                      .+..
T Consensus       288 ~v~~  291 (292)
T PF04952_consen  288 KVAK  291 (292)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8753

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=94.93  E-value=0.031  Score=55.70  Aligned_cols=41  Identities=27%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR  245 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv  245 (271)
                      ..+.|++||.|++||.|+.-+.. ...++.||++|+|++|..
T Consensus        42 ~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         42 PKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            45889999999999999976543 458999999999999953

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=94.65  E-value=0.04  Score=50.44  Aligned_cols=42  Identities=21%  Similarity=0.390  Sum_probs=29.5

Q ss_pred             CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..-|+++.  -...|.++++|.| ++++++|+.|..||+|+++..
T Consensus        12 ~~~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~   53 (328)
T PF12700_consen   12 EASGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS   53 (328)
T ss_dssp             EEEEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred             EEEEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence            34567776  4467999999999 999999999999999999975

...

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=94.65  E-value=0.036  Score=54.69  Aligned_cols=40  Identities=28%  Similarity=0.295  Sum_probs=35.0

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL  244 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il  244 (271)
                      ..+.|++||.|++||.|+..+ .....+|.||++|+|++|.
T Consensus        43 ~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        43 AEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            468999999999999999984 3356899999999999995

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=94.64  E-value=0.069  Score=50.08  Aligned_cols=35  Identities=14%  Similarity=0.291  Sum_probs=32.4

Q ss_pred             eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ...|.++++|+|+++++++||.|..||+|++|...
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~   77 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA   77 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            46899999999999999999999999999999754

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=94.61  E-value=0.033  Score=56.36  Aligned_cols=44  Identities=23%  Similarity=0.141  Sum_probs=38.5

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGD  249 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd  249 (271)
                      ..++|++||.|.+||.|..=+.  .+.+|.||++|+|++|.   +.++.
T Consensus        45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~s   91 (529)
T COG4656          45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPS   91 (529)
T ss_pred             cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcc
Confidence            5688999999999999998775  88999999999999998   44443

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.60  E-value=0.063  Score=52.95  Aligned_cols=43  Identities=21%  Similarity=0.096  Sum_probs=35.9

Q ss_pred             EEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          221 CYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       221 ~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      |.|....-...|.++..|+|.+|+|++||.|..||+|+++.+.
T Consensus        51 G~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~   93 (457)
T TIGR01000        51 GTIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG   93 (457)
T ss_pred             EEEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence            3444444456899999999999999999999999999999764

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=94.59  E-value=0.068  Score=48.78  Aligned_cols=40  Identities=23%  Similarity=0.426  Sum_probs=33.7

Q ss_pred             EEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          222 YIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       222 ~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .|+... ...|.|+.+|+|.++++++|+.|..||+|+.+..
T Consensus        20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~   59 (322)
T TIGR01730        20 SLEAVD-EADLAAEVAGKITKISVREGQKVKKGQVLARLDD   59 (322)
T ss_pred             EEEEee-EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence            344333 3579999999999999999999999999999964

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=94.56  E-value=0.046  Score=52.99  Aligned_cols=35  Identities=29%  Similarity=0.523  Sum_probs=32.8

Q ss_pred             eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ...|.++++|+|.+++|++||.|..||+|++|.+.
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~   95 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT   95 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence            57899999999999999999999999999999764

>PRK07051 hypothetical protein; Validated

Probab=94.39  E-value=0.062  Score=40.84  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             eeeeecCCCeEEEE-------EecCCCCcccCCCeEEEEecC
Q 024168          229 EIPIESDIAGEVIK-------ILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~-------Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      +.+|+||..|++.+       ++++.|+.|..|++|+.++..
T Consensus         3 ~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~   44 (80)
T PRK07051          3 QHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVM   44 (80)
T ss_pred             ccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEc
Confidence            56899999999999       999999999999999998863

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=94.35  E-value=0.063  Score=52.48  Aligned_cols=45  Identities=20%  Similarity=0.364  Sum_probs=38.5

Q ss_pred             CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ...|.|++.. ...|.++++|+|.+|+++.|+.|..||+|++|.+.
T Consensus        77 ~~~Gtv~a~~-~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~  121 (415)
T PRK11556         77 TGLGTVTAAN-TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR  121 (415)
T ss_pred             EEEEEEEeee-EEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence            3557777753 46799999999999999999999999999999763

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=94.30  E-value=0.071  Score=51.84  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=32.3

Q ss_pred             eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ...|.++.+|+|.+++|++|+.|..||+|++|...
T Consensus        58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~   92 (421)
T TIGR03794        58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP   92 (421)
T ss_pred             eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence            45899999999999999999999999999999764

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=94.26  E-value=0.07  Score=51.21  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=37.6

Q ss_pred             eEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          219 VLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       219 ~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|.|++.. ...|.++++|+|.++.++.||.|..||+|++|.+.
T Consensus        54 ~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~   97 (385)
T PRK09578         54 LPGRLDAYR-QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA   97 (385)
T ss_pred             EEEEEEEee-EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence            446677654 46899999999999999999999999999999653

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=94.25  E-value=0.14  Score=43.17  Aligned_cols=65  Identities=23%  Similarity=0.295  Sum_probs=44.8

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeE----ecCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTV----REGQVLCYIEQLGGEIPIESDIAGEVI-----------------  241 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V----~~Gq~l~~IEamK~~~~V~Ap~~G~V~-----------------  241 (271)
                      ..|.||..|.+..-.           ++-|.+    --|+-+++.=..   ..|.||++|+|.                 
T Consensus         3 ~~i~aPv~G~vi~l~-----------~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~   68 (132)
T PF00358_consen    3 ITIYAPVSGKVIPLE-----------EVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGV   68 (132)
T ss_dssp             EEEE-SSSEEEEEGG-----------GSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSE
T ss_pred             eEEEeeCCcEEEEhh-----------hCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCC
Confidence            579999999987533           344444    236777775433   479999999998                 


Q ss_pred             ------------------EEecCCCCcccCCCeEEEEe
Q 024168          242 ------------------KILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       242 ------------------~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                                        +.+++.||.|..||+|+.+-
T Consensus        69 eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D  106 (132)
T PF00358_consen   69 EILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD  106 (132)
T ss_dssp             EEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred             EEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence                              44678899999999999875

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=94.18  E-value=0.057  Score=56.59  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=34.2

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL  244 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il  244 (271)
                      ..+.|++||.|.+||.|+.-+. -...+|.||++|+|+.|.
T Consensus        49 ~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         49 GELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence            4689999999999999996542 245899999999999985

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=94.18  E-value=0.082  Score=50.41  Aligned_cols=43  Identities=19%  Similarity=0.275  Sum_probs=36.1

Q ss_pred             eEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          219 VLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       219 ~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .-|.|++... ..|.|+++|.|.++.+++|+.|..||+|+.+.+
T Consensus        52 ~~G~v~~~~~-~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~   94 (370)
T PRK11578         52 ATGKLDALRK-VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   94 (370)
T ss_pred             EEEEEEeeeE-EEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            3455555443 589999999999999999999999999999965

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=94.11  E-value=0.077  Score=50.99  Aligned_cols=45  Identities=24%  Similarity=0.304  Sum_probs=38.5

Q ss_pred             CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      +..|.|++.. ...|.++++|.|.++.++.|+.|..||+|++|.+.
T Consensus        51 ~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~   95 (385)
T PRK09859         51 ELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA   95 (385)
T ss_pred             EEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence            3556777665 46799999999999999999999999999999754

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=94.11  E-value=0.14  Score=42.71  Aligned_cols=20  Identities=20%  Similarity=0.298  Sum_probs=17.0

Q ss_pred             EEecCCCCcccCCCeEEEEe
Q 024168          242 KILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       242 ~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      +++++.||.|..||+|+++-
T Consensus        83 ~~~vk~Gd~V~~G~~l~~~D  102 (124)
T cd00210          83 TSHVEEGQRVKQGDKLLEFD  102 (124)
T ss_pred             EEEecCCCEEcCCCEEEEEc
Confidence            44688999999999999885

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=94.04  E-value=0.13  Score=42.78  Aligned_cols=20  Identities=25%  Similarity=0.428  Sum_probs=17.4

Q ss_pred             EEecCCCCcccCCCeEEEEe
Q 024168          242 KILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       242 ~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      +.+++.||.|..||+|+++-
T Consensus        83 ~~~v~~Gd~V~~G~~l~~~D  102 (121)
T TIGR00830        83 TSHVEEGQRVKKGDPLLEFD  102 (121)
T ss_pred             EEEecCCCEEcCCCEEEEEc
Confidence            55688999999999999886

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=93.88  E-value=0.09  Score=50.86  Aligned_cols=43  Identities=21%  Similarity=0.231  Sum_probs=36.6

Q ss_pred             EEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          220 LCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       220 l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .|.|++.. ...|.+.++|+|.++.++.||.|..||+|++|.+.
T Consensus        57 ~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~   99 (397)
T PRK15030         57 PGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA   99 (397)
T ss_pred             EEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence            35566544 47899999999999999999999999999999764

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=93.86  E-value=0.1  Score=45.07  Aligned_cols=39  Identities=33%  Similarity=0.615  Sum_probs=30.2

Q ss_pred             CccCCCCeEecCCeEEEEEecCeee-eeecCCCeEEEEEe
Q 024168          206 PSCKEKQTVREGQVLCYIEQLGGEI-PIESDIAGEVIKIL  244 (271)
Q Consensus       206 ~~V~~Gd~V~~Gq~l~~IEamK~~~-~V~Ap~~G~V~~Il  244 (271)
                      +++.+|+.|++||.|+.+.+.|... -++||++|+|+-|.
T Consensus        94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            6789999999999999999999876 59999999999875

; PDB: 3D4R_D.

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=93.78  E-value=0.26  Score=42.77  Aligned_cols=65  Identities=25%  Similarity=0.286  Sum_probs=45.5

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEe----cCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVR----EGQVLCYIEQLGGEIPIESDIAGEVI-----------------  241 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~----~Gq~l~~IEamK~~~~V~Ap~~G~V~-----------------  241 (271)
                      ..|.||+.|.+..-.           ++-|.|=    -||-+++.   .....|.||++|+|.                 
T Consensus         6 ~~i~sP~~G~vv~Ls-----------~VpD~vFs~k~mGdGiAI~---P~~g~vvAPvdG~v~~iFpTkHAigi~t~~Gv   71 (156)
T COG2190           6 EEIYSPLSGEVVPLS-----------DVPDPVFSEKMVGDGVAIK---PSEGEVVAPVDGTVVLIFPTKHAIGIETDEGV   71 (156)
T ss_pred             EEEEccCCceEEEch-----------hCCchHhhcccccCcEEEe---cCCCeEEeccCcEEEEEeeCCcEEEEEcCCCc
Confidence            578999999876432           2222221    25666663   334678888888887                 


Q ss_pred             ------------------EEecCCCCcccCCCeEEEEe
Q 024168          242 ------------------KILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       242 ------------------~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                                        +.+++.||.|..||+|+++-
T Consensus        72 EiLiHiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD  109 (156)
T COG2190          72 EILIHIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFD  109 (156)
T ss_pred             EEEEEeceeeEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence                              45689999999999999874

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=93.63  E-value=0.12  Score=57.05  Aligned_cols=71  Identities=20%  Similarity=0.250  Sum_probs=53.8

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      +...|...+.|..+.          ..|+.++.+..++.....+.. -...|.||+.|+|.+++++.||.|..||+|+.|
T Consensus      1037 g~r~v~fElNGq~re----------V~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~i 1105 (1143)
T TIGR01235      1037 GEREVFFELNGQPRR----------IKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVL 1105 (1143)
T ss_pred             CcEEEEEEECCeEEE----------EEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEE
Confidence            446677777787643          456777777666665444322 224699999999999999999999999999999


Q ss_pred             ec
Q 024168          261 LP  262 (271)
Q Consensus       261 ~~  262 (271)
                      +.
T Consensus      1106 Ea 1107 (1143)
T TIGR01235      1106 EA 1107 (1143)
T ss_pred             Ee
Confidence            84

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=93.52  E-value=0.092  Score=49.39  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=31.6

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|.++++|+|.++.+++||.|..||+|+++.+.
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~   81 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP   81 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence            5699999999999999999999999999999763

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=93.32  E-value=0.13  Score=45.95  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      ..|+||++|+|..+.+..|+.|..|++|+.|.+..
T Consensus        89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~  123 (265)
T TIGR00999        89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG  123 (265)
T ss_pred             EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence            36899999999999999999999999999987643

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=93.24  E-value=0.14  Score=47.80  Aligned_cols=40  Identities=28%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168          205 PPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR  245 (271)
Q Consensus       205 ~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv  245 (271)
                      .-.|++||.|++||+|.+=.... ..-..||++|+|++|..
T Consensus        42 km~VkeGD~Vk~Gq~LF~dK~~p-~v~ftsPvsG~V~~I~R   81 (257)
T PF05896_consen   42 KMLVKEGDRVKAGQPLFEDKKNP-GVKFTSPVSGTVKAINR   81 (257)
T ss_pred             cEEeccCCEEeCCCeeEeeCCCC-CcEEecCCCeEEEEEec
Confidence            46799999999999999843211 23478999999999976

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=93.13  E-value=0.11  Score=50.34  Aligned_cols=34  Identities=32%  Similarity=0.550  Sum_probs=31.5

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|-+.++|.|++++|.|.+.|..||+||+|.|.
T Consensus        54 v~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~   87 (352)
T COG1566          54 VPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPR   87 (352)
T ss_pred             EEEcCcCceEEEEEEecCCCEecCCCeEEEECcH
Confidence            4788999999999999999999999999999864

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=92.33  E-value=0.18  Score=49.01  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=31.6

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      ..|+||++|+|..+.+..|+.|..|++|+.|.+..
T Consensus       254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~  288 (421)
T TIGR03794       254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEVED  288 (421)
T ss_pred             CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEccC
Confidence            57999999999999999999999999999996543

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.03  E-value=0.19  Score=47.83  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=30.6

Q ss_pred             eeeecCCCeEEEEEec-CCCCcccCCCeEEEEecCC
Q 024168          230 IPIESDIAGEVIKILR-KDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv-~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      ..|+||++|+|..+.+ ..|+.|..|++|+.|.+..
T Consensus       272 ~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~~  307 (423)
T TIGR01843       272 LIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPED  307 (423)
T ss_pred             cEEECCCCcEEEEEEEEccCceecCCCeeEEEecCC
Confidence            3699999999999876 6999999999999998754

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=91.89  E-value=0.29  Score=47.81  Aligned_cols=44  Identities=18%  Similarity=0.197  Sum_probs=36.2

Q ss_pred             eEEEEEecC-eeeeeecCCCeEEEEEe-cCCCCcccCCCeEEEEec
Q 024168          219 VLCYIEQLG-GEIPIESDIAGEVIKIL-RKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       219 ~l~~IEamK-~~~~V~Ap~~G~V~~Il-v~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..+.|+... -...|.+.++|.|.+++ +..||.|..||+|++|..
T Consensus       112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~s  157 (409)
T PRK09783        112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI  157 (409)
T ss_pred             EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeC
Confidence            356666443 23479999999999998 999999999999999974

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=91.87  E-value=0.2  Score=51.68  Aligned_cols=33  Identities=30%  Similarity=0.435  Sum_probs=31.1

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .+|.||..|+|.+++|+.||.|+.||+|+.|+.
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEa  558 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEA  558 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEe
Confidence            469999999999999999999999999999984

>PF13437 HlyD_3: HlyD family secretion protein

Probab=91.72  E-value=0.23  Score=38.55  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=28.2

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL  226 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam  226 (271)
                      .|+||..|.+..          .+++.|+.|.+|+.|+.|..+
T Consensus         1 ~i~AP~~G~V~~----------~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVS----------INVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEE----------EeCCCCCEECCCCEEEEEEcc
Confidence            389999999964          457999999999999998864

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=91.31  E-value=0.41  Score=43.16  Aligned_cols=45  Identities=29%  Similarity=0.403  Sum_probs=36.5

Q ss_pred             CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ...+.+++ .....|.+...|.|.+|++++||.|..||+|+.+...
T Consensus        56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~  100 (372)
T COG0845          56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS  100 (372)
T ss_pred             eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence            34455555 3334788889999999999999999999999999863

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=91.26  E-value=0.68  Score=48.37  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=47.8

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEe----cCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVR----EGQVLCYIEQLGGEIPIESDIAGEVI-----------------  241 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~----~Gq~l~~IEamK~~~~V~Ap~~G~V~-----------------  241 (271)
                      ..|.||..|++..-           .++-|.|=    -|+-+++.=.   ...|.||++|+|+                 
T Consensus       499 ~~v~aP~~G~vi~l-----------~~v~D~vFs~~~~G~GvaI~P~---~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~  564 (648)
T PRK10255        499 AELVSPITGDVVAL-----------DQVPDEAFASKAVGDGVAVKPT---DKIVVSPAAGTIVKIFNTNHAFCLETEKGA  564 (648)
T ss_pred             eEEEecCCcEEEEc-----------ccCcchhhhcccccCcEEEeCC---CCeEEecCCeEEEEEcCCCcEEEEEcCCCC
Confidence            56999999998642           23333332    2666666543   3589999999998                 


Q ss_pred             ------------------EEecCCCCcccCCCeEEEEec
Q 024168          242 ------------------KILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       242 ------------------~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                                        +.+|++||.|..||+|+++..
T Consensus       565 eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~  603 (648)
T PRK10255        565 EIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDL  603 (648)
T ss_pred             EEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcH
Confidence                              345889999999999998853

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=90.65  E-value=0.32  Score=50.08  Aligned_cols=33  Identities=24%  Similarity=0.617  Sum_probs=31.2

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||..|+|.++++++||.|+.||+|+.|+.
T Consensus       518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEa  550 (582)
T TIGR01108       518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEA  550 (582)
T ss_pred             CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEe
Confidence            479999999999999999999999999999984

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=90.64  E-value=0.31  Score=50.26  Aligned_cols=34  Identities=24%  Similarity=0.612  Sum_probs=31.4

Q ss_pred             eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ...|.||+.|+|.++++++||.|+.||+|+.++.
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEa  557 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEA  557 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEec
Confidence            3479999999999999999999999999999874

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=90.18  E-value=0.54  Score=48.93  Aligned_cols=64  Identities=23%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEE------------------
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVI------------------  241 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~------------------  241 (271)
                      .|.||..|++..           .-++-|.|=.    ||-+++.=   ....|.||++|+|+                  
T Consensus       480 ~i~aP~~G~v~~-----------L~~v~D~vFs~~~mG~G~AI~P---~~~~v~AP~~G~v~~vf~T~HAigi~t~~G~e  545 (627)
T PRK09824        480 GICSPMTGEVVP-----------LEQVADTTFASGLLGKGIAILP---SVGEVRSPVAGRVASLFATLHAIGLESDDGVE  545 (627)
T ss_pred             hcccccceEEee-----------HHHCCCccccccccCCceEecC---CCCeEEccCCeEEEEEcCCCcEEEEEeCCCcE
Confidence            589999999863           3455666644    66666643   33689999999998                  


Q ss_pred             -----------------EEecCCCCcccCCCeEEEEe
Q 024168          242 -----------------KILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       242 -----------------~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                                       +.+++.||.|..||+|+++.
T Consensus       546 iLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D  582 (627)
T PRK09824        546 VLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD  582 (627)
T ss_pred             EEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence                             45678999999999999885

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=89.71  E-value=0.37  Score=49.55  Aligned_cols=32  Identities=25%  Similarity=0.519  Sum_probs=30.1

Q ss_pred             eeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .+.||+.|+|+.++|++|+.|..||+|+.++.
T Consensus       577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA  608 (645)
T COG4770         577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA  608 (645)
T ss_pred             ceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence            49999999999999999999999999999873

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=89.71  E-value=0.51  Score=41.59  Aligned_cols=52  Identities=19%  Similarity=0.192  Sum_probs=41.5

Q ss_pred             CccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          206 PSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       206 ~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      .++++|+.+++||.++.++-. ....+.-|.+   .++.++.|+.|..|+.|+--.
T Consensus       134 ~~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli~~~  185 (189)
T TIGR00164       134 CYVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVLARL  185 (189)
T ss_pred             EecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEEEEe
Confidence            357899999999999999955 4455666765   377899999999999776543

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=89.62  E-value=0.48  Score=40.72  Aligned_cols=33  Identities=15%  Similarity=0.262  Sum_probs=29.8

Q ss_pred             eeeecCCCeEEEE-------EecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIK-------ILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~-------Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+||..|++.+       ++++.||.|..||.|+.|+.
T Consensus        81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEa  120 (156)
T TIGR00531        81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEA  120 (156)
T ss_pred             CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEe
Confidence            4689999999997       58999999999999999874

The gene name is accB or fabE.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=89.61  E-value=0.31  Score=44.07  Aligned_cols=34  Identities=32%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL  226 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam  226 (271)
                      +.|.++..|.+-          +.+|++||.|++||+|+.|+.-
T Consensus         2 ~~Vq~~~~G~V~----------~i~V~eG~~VkkGq~L~~LD~~   35 (305)
T PF00529_consen    2 KIVQSLVGGIVT----------EILVKEGQRVKKGQVLARLDPT   35 (305)
T ss_dssp             EEE--SS-EEEE----------EE-S-TTEEE-TTSECEEE--H
T ss_pred             EEEeCCCCeEEE----------EEEccCcCEEeCCCEEEEEEee
Confidence            468888888885          4689999999999999999853

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=89.40  E-value=0.88  Score=47.11  Aligned_cols=65  Identities=23%  Similarity=0.259  Sum_probs=48.2

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEE------------------
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVI------------------  241 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~------------------  241 (271)
                      .|.||..|++..-           -++-|.|=.    ||-+++.=   ....|.||++|+|.                  
T Consensus       464 ~i~aP~~G~~~~l-----------~~v~D~vFs~~~~G~G~ai~P---~~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~e  529 (610)
T TIGR01995       464 SLYAPVAGEMLPL-----------NEVPDEVFSSGAMGKGIAILP---TEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIE  529 (610)
T ss_pred             eeccccceEEeeH-----------hhCCCccccccCcCCceEeeC---CCCEEECCCCeEEEEEcCCCCEEEEEECCCcE
Confidence            5899999998643           344555543    66666643   34689999999888                  


Q ss_pred             -----------------EEecCCCCcccCCCeEEEEec
Q 024168          242 -----------------KILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       242 -----------------~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                                       +.++++||.|..||+|+++..
T Consensus       530 iliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~  567 (610)
T TIGR01995       530 ILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDL  567 (610)
T ss_pred             EEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEecH
Confidence                             456889999999999998853

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=89.39  E-value=0.55  Score=41.96  Aligned_cols=49  Identities=16%  Similarity=0.201  Sum_probs=40.0

Q ss_pred             CccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          206 PSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       206 ~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                      .++++|+.+++||.++.++-. ....+.-|.+   .++.++.||.|..|+.++
T Consensus       154 ~~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi  202 (206)
T PRK05305        154 CYVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL  202 (206)
T ss_pred             EeCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence            367899999999999999955 4556666665   378999999999999664

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=89.28  E-value=0.49  Score=48.83  Aligned_cols=33  Identities=30%  Similarity=0.550  Sum_probs=31.2

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||++|+|.+++++.|+.|+.||+|+.++.
T Consensus       523 ~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~iea  555 (592)
T PRK09282        523 GAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEA  555 (592)
T ss_pred             ceEeCCCcEEEEEEEeCCCCEECCCCEEEEEec
Confidence            579999999999999999999999999999874

>PRK12784 hypothetical protein; Provisional

Probab=89.17  E-value=0.34  Score=37.66  Aligned_cols=44  Identities=16%  Similarity=0.169  Sum_probs=37.5

Q ss_pred             cCeee-eeecCCCeEEEEEecCCCCcccCCCeEEEEecCCCCCCC
Q 024168          226 LGGEI-PIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKL  269 (271)
Q Consensus       226 mK~~~-~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~~~~~  269 (271)
                      ||... +|.||+-|+|.++.+..++.|--=.+||.|+..+.-++|
T Consensus         1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~   45 (84)
T PRK12784          1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEK   45 (84)
T ss_pred             CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEE
Confidence            45444 699999999999999999999999999999988775443

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=89.00  E-value=0.46  Score=46.17  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFP  265 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~  265 (271)
                      ..|+||++|.|.+..+..|+.|..|++|+.+-|...
T Consensus       209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~~  244 (352)
T COG1566         209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLDS  244 (352)
T ss_pred             CEEECCCCceEEeecccCCCeecCCCceEEEecccc
Confidence            479999999999999999999999999999988543

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=88.85  E-value=0.56  Score=46.33  Aligned_cols=36  Identities=17%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             eeeeecCCCeEEEEEecCCC-CcccCCCeEEEEecCC
Q 024168          229 EIPIESDIAGEVIKILRKDG-DPIGYGDPLIVILPSF  264 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~G-d~V~~Gq~L~~I~~~~  264 (271)
                      ...|+||++|+|....+..| +.|..|++|+.|-|..
T Consensus       316 ~~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~IvP~~  352 (457)
T TIGR01000       316 KGVIKAPEDGVLHLNPETKGIKYVPKGTLIAQIYPIL  352 (457)
T ss_pred             CCEEECCCCeEEEecccCCCCcEeCCCCEEEEEecCC
Confidence            35799999999997778888 6899999999998763

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=87.63  E-value=0.8  Score=39.30  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=30.1

Q ss_pred             eeeecCCCeEEEE-------EecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIK-------ILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~-------Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+||..|++..       .+++.||.|+.||+|+.|+.
T Consensus        80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEa  119 (155)
T PRK06302         80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEA  119 (155)
T ss_pred             CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEe
Confidence            4689999999987       68999999999999999985

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=87.42  E-value=0.69  Score=45.36  Aligned_cols=42  Identities=24%  Similarity=0.351  Sum_probs=33.0

Q ss_pred             CCccCCCCeEecCCeEEEEEecCee--eeeecCCCeEEEEEecCCCC
Q 024168          205 PPSCKEKQTVREGQVLCYIEQLGGE--IPIESDIAGEVIKILRKDGD  249 (271)
Q Consensus       205 ~~~V~~Gd~V~~Gq~l~~IEamK~~--~~V~Ap~~G~V~~Ilv~~Gd  249 (271)
                      .-.|++||.|++||+|+.   .|-.  .-+.||++|+|++|...+-.
T Consensus        42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~KR   85 (447)
T COG1726          42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEKR   85 (447)
T ss_pred             cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccce
Confidence            356999999999999997   3432  34899999999999755443

>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins

Probab=86.89  E-value=4.9  Score=39.21  Aligned_cols=104  Identities=25%  Similarity=0.322  Sum_probs=61.6

Q ss_pred             CCCC-HHHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCC
Q 024168           84 LIPD-SSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITK  162 (271)
Q Consensus        84 ~~md-~~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~~p~~~~a~~~~~~~~~ap~~~~~~~~~s~~~~~  162 (271)
                      ..+| .++|++-|..  +-.+|+=+.++..|.++.++-.....     |   . .         +.           ...
T Consensus       140 ~~id~~~~ie~~l~~--~~~~i~WV~i~~~GT~l~I~v~E~~~-----p---~-~---------~~-----------~~~  188 (385)
T PF06898_consen  140 FKIDSCEEIEKKLRK--QFPDISWVGIEIKGTRLIIEVVEKVD-----P---E-E---------ID-----------KEE  188 (385)
T ss_pred             cCCChHHHHHHHHHh--hCCCeEEEEEEEEeeEEEEEEEEcCC-----C---C-c---------cc-----------CCC
Confidence            5567 8999998852  44688888888888888888543211     0   0 0         00           001


Q ss_pred             CCCCCCCccccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEE--EEEecCeeeeeecCCCeEE
Q 024168          163 PVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLC--YIEQLGGEIPIESDIAGEV  240 (271)
Q Consensus       163 pa~~~~~~~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~--~IEamK~~~~V~Ap~~G~V  240 (271)
                      |                   ..|.|-..|.+.+--.   -...|.|++||.|++||+|.  .|+......+|.  ..|.|
T Consensus       189 p-------------------~~lVA~kdGvI~~i~v---~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~v~--A~G~V  244 (385)
T PF06898_consen  189 P-------------------CNLVAKKDGVITSIIV---RSGTPLVKVGDTVKKGDVLISGVIEIEGDEQEVH--ADGDV  244 (385)
T ss_pred             C-------------------cceEECCCCEEEEEEe---cCCeEEecCCCEECCCCEEEeeeEcCCCCceEEC--CcEEE
Confidence            1                   1234444554433211   23568899999999999984  666554444444  34655


Q ss_pred             EE
Q 024168          241 IK  242 (271)
Q Consensus       241 ~~  242 (271)
                      ..
T Consensus       245 ~a  246 (385)
T PF06898_consen  245 KA  246 (385)
T ss_pred             EE
Confidence            53

YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=86.86  E-value=1.1  Score=30.61  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=27.6

Q ss_pred             ecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          233 ESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       233 ~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .++.+|.|..+.+.+|+.|.+|++|+.++..
T Consensus        10 ~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~   40 (74)
T cd06849          10 ESMTEGTIVEWLVKEGDSVEEGDVLAEVETD   40 (74)
T ss_pred             CCCcEEEEEEEEECCCCEEcCCCEEEEEEeC
Confidence            3678999999999999999999999998643

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR02712 urea_carbox urea carboxylase

Probab=86.13  E-value=0.89  Score=50.59  Aligned_cols=33  Identities=33%  Similarity=0.596  Sum_probs=30.7

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||++|+|.+++++.||.|+.||+|+.|+.
T Consensus      1133 ~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEs 1165 (1201)
T TIGR02712      1133 EQVESEYAGNFWKVLVEVGDRVEAGQPLVILEA 1165 (1201)
T ss_pred             cEEeCCceEEEEEEEeCCCCEECCCCEEEEEEe
Confidence            459999999999999999999999999999874

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=85.14  E-value=1.2  Score=33.93  Aligned_cols=28  Identities=29%  Similarity=0.237  Sum_probs=21.1

Q ss_pred             CcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168          188 PKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG  227 (271)
Q Consensus       188 P~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK  227 (271)
                      |.+|...            +++.||.|++||+||.|-+..
T Consensus        30 ~~vGi~l------------~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   30 PAVGIEL------------HKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             TT-EEEE------------SS-TTSEEBTTSEEEEEEESS
T ss_pred             cCcCeEe------------cCcCcCEECCCCeEEEEEcCC
Confidence            5778764            479999999999999987654

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PRK12999 pyruvate carboxylase; Reviewed

Probab=84.48  E-value=1.2  Score=49.41  Aligned_cols=33  Identities=36%  Similarity=0.626  Sum_probs=31.0

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||+.|+|.+++++.||.|..||+|+.++.
T Consensus      1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999       1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred             ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEc
Confidence            469999999999999999999999999999874

>TIGR02876 spore_yqfD sporulation protein YqfD

Probab=84.02  E-value=13  Score=36.33  Aligned_cols=37  Identities=14%  Similarity=0.128  Sum_probs=28.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecC
Q 024168           84 LIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDI  122 (271)
Q Consensus        84 ~~md~~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~  122 (271)
                      ..+|.++|++-|..  +-.+|+=+.++..|.+|.++-..
T Consensus       137 ~~id~~~ie~~l~~--~~~~i~WV~v~i~GTrl~i~v~E  173 (382)
T TIGR02876       137 FSVDVYKLERKLLD--RVPEIMWAGVRVRGTTLVIKVVE  173 (382)
T ss_pred             CCCCHHHHHHHHHh--hCCCcEEEEEEEEeEEEEEEEEe
Confidence            45799999997752  45788888888899998887543

YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=82.95  E-value=1.8  Score=39.88  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG  227 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK  227 (271)
                      ...|.||..|++..          ..+++||.|..||+|+.|+...
T Consensus        45 ~~~~~a~~~g~~~~----------~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         45 TNEVEAPAAGTLRR----------QVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             eEEEecCCCeEEEE----------EEcCCCCEeCCCCEEEEEecCC
Confidence            46799999999864          5689999999999999998654

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=82.35  E-value=2.9  Score=36.68  Aligned_cols=26  Identities=19%  Similarity=0.215  Sum_probs=21.5

Q ss_pred             CCCCCCccCCCCeEecCCeEEEEEec
Q 024168          201 GKRAPPSCKEKQTVREGQVLCYIEQL  226 (271)
Q Consensus       201 ~P~~~~~V~~Gd~V~~Gq~l~~IEam  226 (271)
                      |..-.++|++||+|++||.|+.+.-.
T Consensus       101 G~gF~~~Vk~Gd~Vk~G~~L~~~D~~  126 (169)
T PRK09439        101 GEGFKRIAEEGQRVKVGDPIIEFDLP  126 (169)
T ss_pred             CCceEEEecCCCEEeCCCEEEEEcHH
Confidence            34567789999999999999998743

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=82.01  E-value=1.6  Score=43.44  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=25.2

Q ss_pred             CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          236 IAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+|.+|+++.||.|+.||+|+.|+.
T Consensus        57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vEt   83 (418)
T PTZ00144         57 SEGTVVEWKKKVGDYVKEDEVICIIET   83 (418)
T ss_pred             ceEEEEEEEeCCCCEeCCCCEEEEEEE
Confidence            478999999999999999999999985

>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria

Probab=81.70  E-value=2.4  Score=37.49  Aligned_cols=63  Identities=21%  Similarity=0.289  Sum_probs=46.6

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCcc--CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSC--KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V--~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                      ..|-+-.+|.+..           ++  ++|+.|++||.++.++= .-...+--|.+ .+.++.++.|+.|.+|+.|.
T Consensus       137 v~Vga~~v~~I~~-----------~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~-~~~~~~v~~g~~V~~Ge~i~  201 (202)
T PF02666_consen  137 VQVGALLVGSIVL-----------TVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD-KIFEWSVKPGQKVRAGETIG  201 (202)
T ss_pred             EEeccceeceeEE-----------EecccCCCEEecCcEeCEEec-CCeEEEEEeCC-CccccccCCCCEEEeeeEEe
Confidence            4566677777654           23  68999999999999995 44444444432 33389999999999999886

The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=81.65  E-value=2.4  Score=30.72  Aligned_cols=27  Identities=41%  Similarity=0.489  Sum_probs=24.5

Q ss_pred             CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          236 IAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .+|.+.+++++.|+.|..|++|+.++.
T Consensus        12 ~~g~~~~~~v~~G~~v~~g~~l~~ie~   38 (73)
T cd06663          12 GDGTVVKWLKKVGDKVKKGDVLAEIEA   38 (73)
T ss_pred             cCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence            378999999999999999999998864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=81.06  E-value=2.5  Score=43.86  Aligned_cols=60  Identities=18%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             CCCCCCccCCCCeEecCCeEEEEEecCeee-------eeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          201 GKRAPPSCKEKQTVREGQVLCYIEQLGGEI-------PIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       201 ~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~-------~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      |..-+.+|++||+|++||.|+..+-..+..       +|.-.-......+....+..|..|++++.+
T Consensus       543 g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~  609 (610)
T TIGR01995       543 GEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL  609 (610)
T ss_pred             CCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence            345577899999999999999988444322       222111222233444455678889988865

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
1a6x_A	87	Structure Of The Apo-Biotin Carboxyl Carrier Protei		1e-04
3bdo_A	82	Solution Structure Of Apo-Biotinyl Domain From Acet		2e-04
1bdo_A	80	Structure Of The Biotinyl Domain Of Acetyl-Coenzyme		2e-04

>pdb|1A6X|A Chain A, Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo- Bccp87) Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr, 49 Structures Length = 87

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
           I+ SP VG F R+ +   K      +  Q V  G  LC +E +     IE+D +G V  I
Sbjct: 13  IVRSPMVGTFYRTPSPDAKA---FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 69
Query: 244 LRKDGDPIGYGDPLIVI 260
           L + G P+ + +PL+VI
Sbjct: 70  LVESGQPVEFDEPLVVI 86

>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl Coenzyme A Carboxylase Of Escherichia Coli Determined By Triple-Resonance Nmr Spectroscopy Length = 82

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
           I+ SP VG F R+ +   K      +  Q V  G  LC +E +     IE+D +G V  I
Sbjct: 8   IVRSPMVGTFYRTPSPDAKAF---IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 64
Query: 244 LRKDGDPIGYGDPLIVI 260
           L + G P+ + +PL+VI
Sbjct: 65  LVESGQPVEFDEPLVVI 81

>pdb|1BDO|A Chain A, Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A Carboxylase Determined By Mad Phasing Length = 80

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
           I+ SP VG F R+ +   K      +  Q V  G  LC +E +     IE+D +G V  I
Sbjct: 6   IVRSPMVGTFYRTPSPDAKAF---IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 62
Query: 244 LRKDGDPIGYGDPLIVI 260
           L + G P+ + +PL+VI
Sbjct: 63  LVESGQPVEFDEPLVVI 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	3e-13
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	6e-08
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	4e-07
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	7e-07
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	2e-06
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	8e-06
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	2e-05
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	3e-04
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	7e-04

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Length = 80

 Score = 62.6 bits (153), Expect = 3e-13
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
           I+ SP VG F R+       A    +  Q V  G  LC +E +     IE+D +G V  I
Sbjct: 6   IVRSPMVGTFYRT---PSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 62

Query: 244 LRKDGDPIGYGDPLIVI 260
           L + G P+ + +PL+VI
Sbjct: 63  LVESGQPVEFDEPLVVI 79

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263
           K    + +GQ +  +E +  EIPI +D +G V ++ +K+GD +  GD L+ +  S
Sbjct: 16  KAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 208  CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261
                  V  G  +  IE +  E+ + +  +G+V KIL K+GD +  GD + VI+
Sbjct: 1183 AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVIV 1236

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
                V +GQ LC +  +  E  + S + G V K+       +   D ++ I
Sbjct: 666 VAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           KE  TV+ GQ +  +E +  E  I +   G+V K+L K+ D +  G  LI I
Sbjct: 25  KEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 42.2 bits (100), Expect = 8e-06
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           +    VR GQ L  +E +  E  I S   G V +IL K+G+ +  G PLI +
Sbjct: 22  RVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           K    V EGQ +C IE +  +  + +   G V  +  + GD +G GD L+ +
Sbjct: 42  KPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 209  KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263
               +TV+  Q L   E +  E  I++   G + ++   +GD I  GD LI I  +
Sbjct: 1094 SVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           ++   V  G     +E +   + +     G  +K +++ G  +  G  +  +
Sbjct: 22  EDGGHVEAGSSYAEMEVMKMIMTLNVQERG-RVKYIKRPGAVLEAGCVVARL 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.67
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.54
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.51
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.5
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.49
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.48
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.46
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.46
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.46
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.44
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.43
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.43
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.43
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.42
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.41
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.37
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.37
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.37
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.36
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	99.35
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.35
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.34
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.33
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.3
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.28
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	99.12
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	99.1
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.07
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.01
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.97
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.97
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.94
1hpc_A	131	H protein of the glycine cleavage system; transit	98.92
3klr_A	125	Glycine cleavage system H protein; antiparallel be	98.58
3mxu_A	143	Glycine cleavage system H protein; seattle structu	98.45
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	98.43
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	98.16
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	98.11
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	98.05
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.04
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.97
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.83
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	97.82
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	97.62
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	97.61
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	97.51
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.35
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	97.26
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	97.22
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	96.94
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.93
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	96.78
2qj8_A	332	MLR6093 protein; structural genomics, joint center	96.71
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	96.64
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	96.52
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	96.51
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	96.1
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	95.9
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	95.87
2xha_A	193	NUSG, transcription antitermination protein NUSG;	95.81
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	95.69
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	95.59
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	95.52
3our_B	183	EIIA, phosphotransferase system IIA component; exh	95.03
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	95.03
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	94.99
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	94.61
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	94.45
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	94.42
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	94.37
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	94.29
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	94.16
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	94.09
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	94.03
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	93.85
2xha_A	193	NUSG, transcription antitermination protein NUSG;	93.75
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	93.46
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	93.32
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	93.11
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	92.9
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	92.82
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	92.57
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	92.35
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	91.58
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	90.7
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	89.55
2bco_A	350	Succinylglutamate desuccinylase; NESG, VPR14, stru	89.0
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	88.88
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	88.51
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	88.03
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	87.73
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	86.12
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	85.23

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.67  E-value=5.1e-16  Score=115.95  Aligned_cols=76  Identities=36%  Similarity=0.557  Sum_probs=71.9

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..|+||+.|.+++.+.   +..+|++++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++||.|.
T Consensus         5 ~~v~a~~~G~v~~~~~---~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPS---PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSSEEEESSSS---TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             eEEEcCCCeEEEEecc---cCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            4699999999998764   789999999999999999999999999999999999999999999999999999999874

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=110.49  Aligned_cols=73  Identities=16%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+||+.|+++.          |+|++||.|++||+|+.||+||+..+|+||++|+|.+++ +.|+.|..|++|+.|.+
T Consensus         6 ~~v~a~~~G~v~~----------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~   74 (84)
T 2kcc_A            6 TVLRSPSAGKLTQ----------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL   74 (84)
T ss_dssp             TEECCSSSCCEEE----------ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred             ceEECCCCEEEEE----------EECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence            3699999999874          789999999999999999999999999999999999999 99999999999999998


Q ss_pred             CCCC
Q 024168          263 SFPG  266 (271)
Q Consensus       263 ~~~~  266 (271)
                      .+|.
T Consensus        75 ~~~~   78 (84)
T 2kcc_A           75 DDLE   78 (84)
T ss_dssp             SCSC
T ss_pred             CChh
Confidence            7764

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.51  E-value=7.9e-14  Score=101.38  Aligned_cols=69  Identities=28%  Similarity=0.431  Sum_probs=65.2

Q ss_pred             EeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          185 LESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       185 V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      |+||+.|++..          |++++||.|++||+|+.||+++...+|+||++|+|.+++++.|+.|..|++|+.|.+.
T Consensus         2 v~a~~~G~v~~----------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   70 (72)
T 1z6h_A            2 VSIQMAGNLWK----------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS   70 (72)
T ss_dssp             EECCSSEEEEE----------ECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred             EECcccEEEEE----------EEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence            78999999864          7899999999999999999999999999999999999999999999999999999764

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.50  E-value=7.1e-14  Score=106.51  Aligned_cols=63  Identities=27%  Similarity=0.333  Sum_probs=59.0

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEecCCCC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVILPSFPG  266 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~~~~~~  266 (271)
                      ..|+|++||.|++||+||.||+||+.++|+||++|+|.+++++.|+ .|..|++|++|.....+
T Consensus        23 ~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~~~   86 (87)
T 3crk_C           23 QRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEAD   86 (87)
T ss_dssp             EEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSSTT
T ss_pred             EEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcccCC
Confidence            3589999999999999999999999999999999999999999999 89999999999876544

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.1e-14  Score=110.92  Aligned_cols=83  Identities=20%  Similarity=0.240  Sum_probs=69.6

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcc-cCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPI-GYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V-~~Gq~L~~I~  261 (271)
                      ..|+.|..|.....    |....|+|++||.|++||+||.||+||+.++|+||++|+|.+++++.|+.| ..|++|++|.
T Consensus         8 ~~i~~P~lg~~~~~----G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~   83 (98)
T 2dnc_A            8 IKILMPSLSPTMEE----GNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV   83 (98)
T ss_dssp             EEEECCCCSTTCSE----ECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred             EEEECCCCCCCCcc----EEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence            45777765532211    233569999999999999999999999999999999999999999999999 9999999999


Q ss_pred             cCCCCCCC
Q 024168          262 PSFPGIKL  269 (271)
Q Consensus       262 ~~~~~~~~  269 (271)
                      ....++..
T Consensus        84 ~~~~~~~~   91 (98)
T 2dnc_A           84 EEGEDWKH   91 (98)
T ss_dssp             CTTSCSSC
T ss_pred             cCCCcccc
Confidence            87666543

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.4e-13  Score=107.48  Aligned_cols=72  Identities=17%  Similarity=0.265  Sum_probs=67.3

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||+.|++.+          |++++||.|++||+|+.||+||+..+|+||++|+|. ++++.|+.|..|++|++|.+
T Consensus        18 ~~v~a~~~G~v~~----------~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~   86 (100)
T 2dn8_A           18 TVLRSPSAGKLTQ----------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL   86 (100)
T ss_dssp             TEEECSSCEEEEE----------ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred             cEEeCCCCEEEEE----------EEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence            4699999999974          789999999999999999999999999999999999 99999999999999999987


Q ss_pred             CCC
Q 024168          263 SFP  265 (271)
Q Consensus       263 ~~~  265 (271)
                      .++
T Consensus        87 ~~~   89 (100)
T 2dn8_A           87 DDP   89 (100)
T ss_dssp             SCS
T ss_pred             CCc
Confidence            554

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.46  E-value=3.4e-13  Score=99.33  Aligned_cols=70  Identities=30%  Similarity=0.356  Sum_probs=65.6

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ...|.||+.|.+.+          +++++||.|++||+|+.|+.+++..+|+||++|+|.++.++.|+.|..|++|+.|+
T Consensus         8 ~~~v~a~~~G~v~~----------~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A            8 EGEIPAPLAGTVSK----------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SSEEEBSSSCEEEE----------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CeEEECCCCEEEEE----------EEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            35799999999964          67999999999999999999999999999999999999999999999999999874

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.46  E-value=3.5e-13  Score=98.08  Aligned_cols=69  Identities=32%  Similarity=0.406  Sum_probs=64.9

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..|.||+.|.+..          |++++||.|++||+|+.|+++++..+|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus         6 ~~v~a~~~G~v~~----------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A            6 NVVSAPMPGKVLR----------VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             CEEECSSCEEEEE----------ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             eEEecCCCEEEEE----------EEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            4699999999864          67999999999999999999999999999999999999999999999999999874

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.46  E-value=2.8e-13  Score=100.88  Aligned_cols=60  Identities=18%  Similarity=0.254  Sum_probs=57.4

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+.
T Consensus        19 ~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (79)
T 1ghj_A           19 ATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             CCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             EEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence            469999999999999999999999999999999999999999999999999999999753

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.44  E-value=7e-14  Score=115.24  Aligned_cols=81  Identities=25%  Similarity=0.284  Sum_probs=68.4

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~  261 (271)
                      ..|+.|..|.....    |....|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|.
T Consensus        28 ~~i~~P~lG~~~~~----G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~  103 (128)
T 1y8o_B           28 MQVLLPALSPTMTM----GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV  103 (128)
T ss_dssp             EEEECCCSSTTCSE----EEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             eeEEcCCCCCCccc----EEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence            56788876543222    1235699999999999999999999999999999999999999999998 899999999998


Q ss_pred             cCCCCC
Q 024168          262 PSFPGI  267 (271)
Q Consensus       262 ~~~~~~  267 (271)
                      ....++
T Consensus       104 ~~~~~~  109 (128)
T 1y8o_B          104 EKEADI  109 (128)
T ss_dssp             SSGGGG
T ss_pred             cCccch
Confidence            765443

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.43  E-value=2.9e-13  Score=104.86  Aligned_cols=61  Identities=23%  Similarity=0.232  Sum_probs=58.0

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      ..|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+..
T Consensus        22 ~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~   82 (93)
T 1k8m_A           22 KEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (93)
T ss_dssp             EEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             EEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            3589999999999999999999999999999999999999999999999999999998654

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.43  E-value=2.6e-13  Score=145.46  Aligned_cols=72  Identities=31%  Similarity=0.449  Sum_probs=68.3

Q ss_pred             CCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          179 DEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       179 ~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                      +.+...|+|||+|+|+.          |+|++||.|++||+|++||+||++++|+||++|+|.+|++++||.|++||+|+
T Consensus      1164 ~~~~~~v~ap~~G~v~~----------~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~ 1233 (1236)
T 3va7_A         1164 PDDAELLYSEYTGRFWK----------PVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVA 1233 (1236)
T ss_dssp             CTTCEEEECSSCEEEEE----------ESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEE
T ss_pred             CCCCcEEeCCCcEEEEE----------EEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEE
Confidence            44567899999999984          89999999999999999999999999999999999999999999999999999


Q ss_pred             EE
Q 024168          259 VI  260 (271)
Q Consensus       259 ~I  260 (271)
                      .|
T Consensus      1234 ~i 1235 (1236)
T 3va7_A         1234 VI 1235 (1236)
T ss_dssp             EE
T ss_pred             Ee
Confidence            87

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.43  E-value=2.7e-13  Score=137.43  Aligned_cols=69  Identities=28%  Similarity=0.392  Sum_probs=66.1

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..|+|||+|+++.          |+|++||.|++||+|++||+|||+++|+||.+|+|.+|++++|+.|..|++|++|+
T Consensus       613 ~~v~ap~~G~v~~----------~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          613 KMLLCPMPGLIVK----------VDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             SEEECCSCEEEEE----------ECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CeEECCCcEEEEE----------EEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            5799999999974          88999999999999999999999999999999999999999999999999999884

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.42  E-value=1.9e-13  Score=109.03  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~  261 (271)
                      ..|+.|..|.....    |....|+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+ .|..|++|++|.
T Consensus         8 ~~i~~P~lg~~~~~----G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~   83 (108)
T 2dne_A            8 QKVPLPSLSPTMQA----GTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV   83 (108)
T ss_dssp             EEEECCCCSSSCCE----EEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred             eEEecCCCCCCccc----EEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence            45666665532211    1234699999999999999999999999999999999999999999999 899999999998


Q ss_pred             cCC
Q 024168          262 PSF  264 (271)
Q Consensus       262 ~~~  264 (271)
                      ...
T Consensus        84 ~~~   86 (108)
T 2dne_A           84 GKP   86 (108)
T ss_dssp             SCH
T ss_pred             cCc
Confidence            653

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.41  E-value=4.5e-13  Score=99.13  Aligned_cols=64  Identities=25%  Similarity=0.294  Sum_probs=59.7

Q ss_pred             CcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          188 PKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       188 P~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      |+.|.+.          .|++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|++|.
T Consensus        13 ~~~G~v~----------~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A           13 VTEGEIV----------RWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             CCCEEEE----------ECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             CccEEEE----------EEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            4667765          489999999999999999999999999999999999999999999999999999985

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.37  E-value=1.1e-13  Score=104.99  Aligned_cols=70  Identities=17%  Similarity=0.198  Sum_probs=64.4

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .|++|..|++          ..|++++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|...
T Consensus         4 ~i~~p~~G~v----------~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A            4 EVNVPDIVEV----------TEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             CCCCCSCCCC----------CSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred             EEECCCeEEE----------EEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            3667777765          468999999999999999999999999999999999999999999999999999999864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.37  E-value=9.9e-13  Score=97.88  Aligned_cols=61  Identities=25%  Similarity=0.260  Sum_probs=58.1

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      ..|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|.+..
T Consensus        16 ~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~   76 (79)
T 1iyu_A           16 IELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             EEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence            4689999999999999999999999999999999999999999999999999999998754

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.37  E-value=9.9e-13  Score=140.15  Aligned_cols=73  Identities=23%  Similarity=0.276  Sum_probs=67.6

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      +...|.|||.|+++.          |+|++||.|++||+|++||+||++++|+||++|+|.+|++++|+.|..|++|+.|
T Consensus      1076 ~~~~v~ap~~G~v~~----------~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i 1145 (1150)
T 3hbl_A         1076 NPSHIGAQMPGSVTE----------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEI 1145 (1150)
T ss_dssp             CSSEEECSSSEEEEE----------ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEE
T ss_pred             CCceeecCceEEEEE----------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEE
Confidence            335799999999974          8999999999999999999999999999999999999999999999999999999


Q ss_pred             ecC
Q 024168          261 LPS  263 (271)
Q Consensus       261 ~~~  263 (271)
                      ++.
T Consensus      1146 ~~~ 1148 (1150)
T 3hbl_A         1146 EKA 1148 (1150)
T ss_dssp             C--
T ss_pred             ecC
Confidence            864

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=101.58  Aligned_cols=74  Identities=20%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.+|+.|.+..          |++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|+.|..
T Consensus        15 ~~v~a~~~G~v~~----------~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~   84 (99)
T 2ejm_A           15 GGPLAPMTGTIEK----------VFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE   84 (99)
T ss_dssp             SSCBCSSSEEEEE----------ECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred             eEEecCCCEEEEE----------EECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence            3589999999864          789999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCC
Q 024168          263 SFPG  266 (271)
Q Consensus       263 ~~~~  266 (271)
                      ....
T Consensus        85 ~~~~   88 (99)
T 2ejm_A           85 EESD   88 (99)
T ss_dssp             CCSC
T ss_pred             CCcc
Confidence            6553

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=99.35  E-value=1.9e-13  Score=113.79  Aligned_cols=57  Identities=19%  Similarity=0.343  Sum_probs=55.3

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      ++||.|++||+||+||+||++++|.||++|+|++|   ++++|+.|+   ||+ +||+|++.++
T Consensus        54 ~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~~  117 (136)
T 1zko_A           54 EVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDE  117 (136)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred             CCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECCH
Confidence            99999999999999999999999999999999999   999999999   999 9999998765

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.35  E-value=1.4e-12  Score=96.92  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=57.6

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|+.|.+.
T Consensus        18 ~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A           18 TEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             EECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             EEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            458999999999999999999999999999999999999999999999999999999875

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.34  E-value=1.8e-13  Score=106.03  Aligned_cols=69  Identities=30%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..|+||+.|.+..          |++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus        26 ~~v~a~~~G~v~~----------~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           26 SVLRSPMPGVVVA----------VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             CCCCCSSSCEEEE----------ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             eEEECCCCEEEEE----------EECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            4589999999864          78999999999999999999999999999999999999999999999999999874

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.33  E-value=4.8e-13  Score=99.90  Aligned_cols=67  Identities=18%  Similarity=0.211  Sum_probs=61.5

Q ss_pred             CCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          187 SPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       187 sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      +++.|.+.          .|++++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+.
T Consensus        12 ~~~~G~i~----------~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (81)
T 1gjx_A           12 GHENVDII----------AVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             SCSSEEEE----------EECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             CCCcEEEE----------EEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence            35677664          47899999999999999999999999999999999999999999999999999999864

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.30  E-value=1.3e-13  Score=103.22  Aligned_cols=60  Identities=18%  Similarity=0.116  Sum_probs=57.4

Q ss_pred             CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ...|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus        19 v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           19 VATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             EEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            357999999999999999999999999999999999999999999999999999999875

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=99.12  E-value=4e-11  Score=127.98  Aligned_cols=69  Identities=30%  Similarity=0.381  Sum_probs=59.3

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..|.|||.|+++.          |+|++||.|++||+|++||+||+.++|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus      1096 ~~v~ap~~G~v~~----------~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1096 AHVGAPMPGVISR----------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             TEEECSSCEEEEE----------ECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             ceeeCCCCeEEEE----------EEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            4699999999974          78999999999999999999999999999999999999999999999999999875

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=99.10  E-value=2.1e-11  Score=124.63  Aligned_cols=69  Identities=20%  Similarity=0.229  Sum_probs=65.1

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..|.|||.|+++.          |+|++||.|++||+|++||+||+.++|+||++|+|.+++++.|+.|..|++|++|+
T Consensus       650 ~~v~ap~~G~V~~----------v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  718 (718)
T 3bg3_A          650 GQIGAPMPGKVID----------IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE  718 (718)
T ss_dssp             SCEECSSCEEEEE----------ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred             ceEeCCCCeEEEE----------EEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence            3599999999974          78999999999999999999999999999999999999999999999999999763

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.07  E-value=1.4e-11  Score=119.06  Aligned_cols=77  Identities=25%  Similarity=0.326  Sum_probs=0.0

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .|+-|..|.-...    |....|+|++||.|++||+||+||+||+.++|+||++|+|.+|++++|+.|..|++|+.|...
T Consensus         4 ~i~mP~lg~~~~e----g~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~   79 (428)
T 3dva_I            4 EFKLPDIGEGIHE----GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP   79 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEcCCCCCCCcc----EEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            3666666642222    345789999999999999999999999999999999999999999999999999999999864


Q ss_pred             C
Q 024168          264 F  264 (271)
Q Consensus       264 ~  264 (271)
                      .
T Consensus        80 ~   80 (428)
T 3dva_I           80 G   80 (428)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.97  E-value=7.5e-10  Score=91.08  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      ++|+.|++||++|.||+||+.++|.||++|+|++|.   .++.+.|+   ||+ +||+|++.++
T Consensus        46 ~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~~  109 (128)
T 3a7l_A           46 EVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDE  109 (128)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred             CCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECCH
Confidence            889999999999999999999999999999999995   68889999   998 9999998765

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.97  E-value=5.1e-10  Score=92.08  Aligned_cols=57  Identities=19%  Similarity=0.365  Sum_probs=53.2

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCcc---cCCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPI---GYGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V---~~Gq-~L~~I~~~~~  265 (271)
                      ++|+.|++||++|.||+||+.++|.||++|+|++|.   .++.+.|   .||+ +||+|++.++
T Consensus        45 ~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~  108 (128)
T 1onl_A           45 EVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDM  108 (128)
T ss_dssp             CTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCG
T ss_pred             CCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCH
Confidence            899999999999999999999999999999999995   5688888   7998 9999998765

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.94  E-value=1.3e-09  Score=86.11  Aligned_cols=72  Identities=24%  Similarity=0.261  Sum_probs=64.0

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeee-----------------------------eee
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEI-----------------------------PIE  233 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~-----------------------------~V~  233 (271)
                      ..|.||+.|.+..          ++|++||.|++||+|+.|+......                             .|+
T Consensus         2 ~~v~a~~~G~V~~----------v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~   71 (116)
T 2k32_A            2 VIIKPQVSGVIVN----------KLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIK   71 (116)
T ss_dssp             EEECCSSCEEEEE----------ECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEE
T ss_pred             eEEeCcCCEEEEE----------EECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEE
Confidence            4689999999853          6799999999999999999875543                             899


Q ss_pred             cCCCeEEEEEecCCCCcccCC-CeEEEEecCC
Q 024168          234 SDIAGEVIKILRKDGDPIGYG-DPLIVILPSF  264 (271)
Q Consensus       234 Ap~~G~V~~Ilv~~Gd~V~~G-q~L~~I~~~~  264 (271)
                      ||++|+|.++.++.|+.|..| ++|+.|.+.+
T Consensus        72 AP~~G~V~~~~~~~G~~v~~g~~~l~~i~~~~  103 (116)
T 2k32_A           72 APFDGTIGDALVNIGDYVSASTTELVRVTNLN  103 (116)
T ss_dssp             CSSSEEECCCSCCTTCEECTTTSCCEEEECSC
T ss_pred             cCCCEEEEEEECCCCCEEcCCCcEEEEEECCC
Confidence            999999999999999999999 9999998754

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.92  E-value=1e-09  Score=90.65  Aligned_cols=57  Identities=28%  Similarity=0.405  Sum_probs=53.0

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      ++|+.|++||+||.||+||+.++|.||++|+|++|.   .++.+.|+   ||+ +||+|++.++
T Consensus        45 ~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~  108 (131)
T 1hpc_A           45 EPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSP  108 (131)
T ss_dssp             CTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSG
T ss_pred             CCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECCH
Confidence            899999999999999999999999999999999995   67788886   898 9999998765

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=98.58  E-value=7e-08  Score=79.19  Aligned_cols=57  Identities=23%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      ++|+.|++|+++|.||++|+..+|.||++|+|+++   +..+-+.|.   ||+ +||+|++.++
T Consensus        41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~  104 (125)
T 3klr_A           41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNP  104 (125)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred             CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCH
Confidence            78999999999999999999999999999999999   567777777   887 8999998765

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=98.45  E-value=2.4e-07  Score=77.66  Aligned_cols=57  Identities=12%  Similarity=0.179  Sum_probs=50.3

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      ++|+.|++||.+|.||++|...+|.||++|+|+++.   .++-+.|.   ||+ +||+|+++++
T Consensus        63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d~  126 (143)
T 3mxu_A           63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDE  126 (143)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSCT
T ss_pred             CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECCH
Confidence            789999999999999999999999999999999994   45555554   886 9999998776

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=98.43  E-value=9.5e-08  Score=79.58  Aligned_cols=55  Identities=20%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCcc---cCCC-eEEEEecC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPI---GYGD-PLIVILPS  263 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V---~~Gq-~L~~I~~~  263 (271)
                      ++|+.|++||.+|.||++|...+|.||++|+|+++   +..+-+.|   -||+ +||+|++.
T Consensus        58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~  119 (137)
T 3tzu_A           58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPT  119 (137)
T ss_dssp             CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE
T ss_pred             CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEEeh
Confidence            88999999999999999999999999999999999   56677777   4886 99999986

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=98.16  E-value=4.5e-06  Score=76.62  Aligned_cols=75  Identities=20%  Similarity=0.221  Sum_probs=64.3

Q ss_pred             CCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe-------------------------------
Q 024168          180 EGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG-------------------------------  228 (271)
Q Consensus       180 ~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~-------------------------------  228 (271)
                      .....|.++..|.+..          .+|++||.|++||+|+.|+.-.+                               
T Consensus        55 ~~~~~v~~~~~G~V~~----------v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~  124 (359)
T 3lnn_A           55 AKLVKVLPPLAGRIVS----------LNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSE  124 (359)
T ss_dssp             SSEEEECCSSCEEEEE----------CCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             CcEEEEeccCCEEEEE----------EEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3457899999998853          67999999999999999997543                               


Q ss_pred             ---------------------------------------------eeeeecCCCeEEEEEecCCCCcccC-CCeEEEEec
Q 024168          229 ---------------------------------------------EIPIESDIAGEVIKILRKDGDPIGY-GDPLIVILP  262 (271)
Q Consensus       229 ---------------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~-Gq~L~~I~~  262 (271)
                                                                   ...|+||++|+|.++.++.|+.|.. |++|+.|..
T Consensus       125 ~~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~  204 (359)
T 3lnn_A          125 IAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVAD  204 (359)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEEC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEec
Confidence                                                         2479999999999999999999999 999999875


Q ss_pred             CC
Q 024168          263 SF  264 (271)
Q Consensus       263 ~~  264 (271)
                      ..
T Consensus       205 ~~  206 (359)
T 3lnn_A          205 LS  206 (359)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=98.11  E-value=3.3e-06  Score=71.63  Aligned_cols=56  Identities=18%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCC
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSF  264 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~  264 (271)
                      ++|+.|++|+.+|.||++|...+|.||++|+|+++.   ..+-+.|.   ||+ +||+|++.+
T Consensus        68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d  130 (155)
T 3hgb_A           68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDS  130 (155)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCT
T ss_pred             CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECC
Confidence            789999999999999999999999999999999994   45555654   876 999999987

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=98.05  E-value=2.1e-06  Score=76.23  Aligned_cols=73  Identities=18%  Similarity=0.194  Sum_probs=62.1

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG---------------------------------  228 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~---------------------------------  228 (271)
                      ...|.+|..|.+..          ++|++||.|++||+|+.|+....                                 
T Consensus        22 ~~~v~a~~~G~V~~----------v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~   91 (277)
T 2f1m_A           22 IAEVRPQVSGIILK----------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG   91 (277)
T ss_dssp             EEEECCSSCEEEEE----------ECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             EEEEEccccEEEEE----------EEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999853          67999999999999999986321                                 


Q ss_pred             --------------------------------------eeeeecCCCeEEEEEecCCCCcccCC--CeEEEEecCC
Q 024168          229 --------------------------------------EIPIESDIAGEVIKILRKDGDPIGYG--DPLIVILPSF  264 (271)
Q Consensus       229 --------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~G--q~L~~I~~~~  264 (271)
                                                            ...|+||++|+|..+.++.|+.|..|  ++|+.|....
T Consensus        92 ~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~  167 (277)
T 2f1m_A           92 TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD  167 (277)
T ss_dssp             STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECS
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCC
Confidence                                                  23799999999999999999999999  5899987543

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.04  E-value=8.6e-06  Score=77.33  Aligned_cols=71  Identities=14%  Similarity=0.191  Sum_probs=61.1

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCcc-CCCCeEecCCeEEEEEec----------------------------------
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSC-KEKQTVREGQVLCYIEQL----------------------------------  226 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V-~~Gd~V~~Gq~l~~IEam----------------------------------  226 (271)
                      ...|.++..|.+..          .+| ++||.|++||+|+.|+.-                                  
T Consensus       121 ~~~v~a~~~G~V~~----------v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~  190 (413)
T 3ne5_B          121 YAIVQARAAGFIDK----------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGM  190 (413)
T ss_dssp             EEEECCSSCEEEEE----------ECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred             eEEEecccCEEEEE----------EEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Confidence            46789999998853          568 999999999999999942                                  


Q ss_pred             --------------CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          227 --------------GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       227 --------------K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                                    .....|+||++|+|.++.++.|+.|..|++||.|..
T Consensus       191 ~~~~~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~  240 (413)
T 3ne5_B          191 PEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG  240 (413)
T ss_dssp             CHHHHHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred             CHHHHHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence                          123479999999999999999999999999999874

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.97  E-value=8.7e-06  Score=74.20  Aligned_cols=73  Identities=19%  Similarity=0.217  Sum_probs=61.6

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe--------------------------------
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG--------------------------------  228 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~--------------------------------  228 (271)
                      ....|.++..|.+..          .+|++||.|++||+|+.|+....                                
T Consensus        30 ~~~~v~~~~~G~V~~----------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~   99 (341)
T 3fpp_A           30 RKVDVGAQVSGQLKT----------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTY   99 (341)
T ss_dssp             SEEECCCSSCEEEEE----------ECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             EEEEEeccCCcEEEE----------EEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446899999998853          67999999999999999986421                                


Q ss_pred             -----------------------------------------------------eeeeecCCCeEEEEEecCCCCcccCCC
Q 024168          229 -----------------------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGD  255 (271)
Q Consensus       229 -----------------------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq  255 (271)
                                                                           ...|+||++|+|.++.++.|+.|..|+
T Consensus       100 ~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~  179 (341)
T 3fpp_A          100 SRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQ  179 (341)
T ss_dssp             HHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTT
T ss_pred             HHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCC
Confidence                                                                 135999999999999999999999999


Q ss_pred             e---EEEEecC
Q 024168          256 P---LIVILPS  263 (271)
Q Consensus       256 ~---L~~I~~~  263 (271)
                      +   |+.|...
T Consensus       180 ~~~~l~~i~~~  190 (341)
T 3fpp_A          180 QAPNILTLADM  190 (341)
T ss_dssp             SCCCCEEEECC
T ss_pred             CCceEEEEecC
Confidence            7   8888653

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.83  E-value=1.2e-05  Score=74.98  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=62.2

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe--------------------------------
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG--------------------------------  228 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~--------------------------------  228 (271)
                      ....|.++..|.+..          .+|++||.|++||+|+.|+....                                
T Consensus        42 ~~~~v~a~v~G~V~~----------v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~  111 (369)
T 1vf7_A           42 RIAEVRPQVNGIILK----------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSK  111 (369)
T ss_dssp             CEEEECCSSCEEEEE----------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCH
T ss_pred             eEEEEEeeCceEEEE----------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCH
Confidence            446899999999853          67999999999999999985321                                


Q ss_pred             -------------------------eeeeecCCCeEEEEEecCCCCcccCC--CeEEEEecC
Q 024168          229 -------------------------EIPIESDIAGEVIKILRKDGDPIGYG--DPLIVILPS  263 (271)
Q Consensus       229 -------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~G--q~L~~I~~~  263 (271)
                                               ...|+||++|+|.++.++.|+.|..|  ++|+.|...
T Consensus       112 ~~~~~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~  173 (369)
T 1vf7_A          112 QQYADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL  173 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence                                     24799999999999999999999995  899999754

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=97.82  E-value=6.2e-05  Score=69.99  Aligned_cols=69  Identities=20%  Similarity=0.115  Sum_probs=58.7

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec----CeeeeeecCCCeEEEEEecCCCCcccCCCeE
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL----GGEIPIESDIAGEVIKILRKDGDPIGYGDPL  257 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam----K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L  257 (271)
                      ...|+||..|.|+           +.++.||.|++||+|+.|...    ....+|+||.+|+|....  ..-.|..|+.|
T Consensus       257 ~~~v~A~~~Gl~~-----------~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l  323 (331)
T 3na6_A          257 DCYLFSEHDGLFE-----------IMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCA  323 (331)
T ss_dssp             CCCEECSSCEEEE-----------ESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEE
T ss_pred             cEEEeCCCCeEEE-----------EcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEE
Confidence            4568999999886           358999999999999999985    456899999999998875  45688999999


Q ss_pred             EEEecC
Q 024168          258 IVILPS  263 (271)
Q Consensus       258 ~~I~~~  263 (271)
                      |.|...
T Consensus       324 ~~Ia~~  329 (331)
T 3na6_A          324 AVIGVV  329 (331)
T ss_dssp             EEEECB
T ss_pred             EEEecc
Confidence            999754

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=97.62  E-value=0.00018  Score=67.18  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=59.9

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec----CeeeeeecCCCeEEEEEecCCCCcccCCCe
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL----GGEIPIESDIAGEVIKILRKDGDPIGYGDP  256 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam----K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~  256 (271)
                      ....++||..|.|+           +.++.||.|++||+|+.|+.+    +...+|+||.+|+|..+.  ....|..|+.
T Consensus       266 ~~~~v~A~~~G~~~-----------~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~  332 (354)
T 3cdx_A          266 ADAYVMAPRTGLFE-----------PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDA  332 (354)
T ss_dssp             GGGEEECSSCEEEE-----------ESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCE
T ss_pred             CcEEEECCCCEEEE-----------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCE
Confidence            34679999999775           347899999999999999984    677899999999999775  6778999999


Q ss_pred             EEEEecCC
Q 024168          257 LIVILPSF  264 (271)
Q Consensus       257 L~~I~~~~  264 (271)
                      ||.|....
T Consensus       333 l~~ia~~~  340 (354)
T 3cdx_A          333 VAVVMEDY  340 (354)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEeeec
Confidence            99987543

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=97.61  E-value=0.00015  Score=68.52  Aligned_cols=69  Identities=13%  Similarity=0.100  Sum_probs=59.0

Q ss_pred             CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe------cCeeeeeecCCCeEEEEEecCCCCcccCC
Q 024168          181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ------LGGEIPIESDIAGEVIKILRKDGDPIGYG  254 (271)
Q Consensus       181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa------mK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~G  254 (271)
                      +...|+||..|.|+           +.++.||.|++||+|+.|-.      .....+|+||.+|+|....  ..-.|..|
T Consensus       289 ~~~~v~A~~~Gl~~-----------~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G  355 (368)
T 3fmc_A          289 NYRKFHAPKAGMVE-----------YLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQG  355 (368)
T ss_dssp             GEEEEECSSCEEEE-----------ECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTT
T ss_pred             CcEEEecCCCEEEE-----------EeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCC
Confidence            45789999999997           35899999999999999998      4466899999999998876  44689999


Q ss_pred             CeEEEEec
Q 024168          255 DPLIVILP  262 (271)
Q Consensus       255 q~L~~I~~  262 (271)
                      +.|+.|-.
T Consensus       356 ~~l~~i~~  363 (368)
T 3fmc_A          356 TELYKVMT  363 (368)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEee
Confidence            99998864

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=4e-05  Score=59.23  Aligned_cols=46  Identities=17%  Similarity=0.244  Sum_probs=42.8

Q ss_pred             CCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          217 GQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       217 Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      |..+|.++.++....|.||++|+|.++++++||.|..||+|+.++.
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~   50 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV   50 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence            5667999999999999999999999999999999999999999974

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.35  E-value=1.3e-05  Score=73.72  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=28.0

Q ss_pred             eeecCCCeEEEEEecCCCCcccCCCe---EEEEe
Q 024168          231 PIESDIAGEVIKILRKDGDPIGYGDP---LIVIL  261 (271)
Q Consensus       231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~---L~~I~  261 (271)
                      .|+||++|+|.++.++.|+.|..|++   |+.|.
T Consensus       156 ~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~  189 (369)
T 4dk0_A          156 KITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA  189 (369)
T ss_dssp             SCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred             EEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence            49999999999999999999999998   76554

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=97.26  E-value=0.00052  Score=58.32  Aligned_cols=65  Identities=17%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEEEE---------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVIKI---------------  243 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~~I---------------  243 (271)
                      ..|.||+.|.+..-           -++.|.+-.    |+.+++....   ..|+||++|+|..+               
T Consensus        13 ~~i~aP~~G~vv~l-----------~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~   78 (161)
T 1f3z_A           13 IEIIAPLSGEIVNI-----------EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGV   78 (161)
T ss_dssp             EEEECSSCEEEEEG-----------GGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred             cEEEecCCeEEEEe-----------EECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCC
Confidence            46999999998743           245666655    8888887764   58899999999998               


Q ss_pred             --------------------ecCCCCcccCCCeEEEEe
Q 024168          244 --------------------LRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       244 --------------------lv~~Gd~V~~Gq~L~~I~  261 (271)
                                          +++.||.|..||+|+++.
T Consensus        79 evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           79 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence                                899999999999999885

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=97.22  E-value=0.00055  Score=57.73  Aligned_cols=65  Identities=12%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEEE----------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVIK----------------  242 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~~----------------  242 (271)
                      ..|.||+.|.+..-           -++.|.+-.    |+.+++....   ..|+||++|+|..                
T Consensus         8 ~~i~aP~~G~vv~l-----------~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~   73 (154)
T 2gpr_A            8 LKVLAPCDGTIITL-----------DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGV   73 (154)
T ss_dssp             EEEECSSSEEEECG-----------GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSC
T ss_pred             CEEEecCCeEEEEe-----------eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCC
Confidence            46999999999742           356676655    8888888764   5899999999998                


Q ss_pred             -------------------EecCCCCcccCCCeEEEEe
Q 024168          243 -------------------ILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       243 -------------------Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                                         ++|+.||.|..||+|+++.
T Consensus        74 evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d  111 (154)
T 2gpr_A           74 EILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             EEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence                               4899999999999999885

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=96.94  E-value=0.00047  Score=58.61  Aligned_cols=64  Identities=19%  Similarity=0.333  Sum_probs=52.7

Q ss_pred             EEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEEEE----------------
Q 024168          184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVIKI----------------  243 (271)
Q Consensus       184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~~I----------------  243 (271)
                      .|.||+.|.+..-           -++.|.+-.    |+.+++.-.   ...|+||++|+|..+                
T Consensus        14 ~i~aP~~G~vv~l-----------~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~e   79 (162)
T 1ax3_A           14 VFVSPITGEIHPI-----------TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGRE   79 (162)
T ss_dssp             SCCCCCSEEEEEG-----------GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCE
T ss_pred             EEEecCceEEEEe-----------EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCE
Confidence            3899999998742           355666655    888888776   358899999999988                


Q ss_pred             -------------------ecCCCCcccCCCeEEEEe
Q 024168          244 -------------------LRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       244 -------------------lv~~Gd~V~~Gq~L~~I~  261 (271)
                                         +|+.||.|..||+|+++.
T Consensus        80 vLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           80 ILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             EEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred             EEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence                               889999999999999885

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.93  E-value=0.001  Score=47.40  Aligned_cols=33  Identities=24%  Similarity=0.430  Sum_probs=30.5

Q ss_pred             eeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .|.|+++|+|.+++++.|+.|..||+|++|...
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   33 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM   33 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence            478999999999999999999999999999853

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=96.78  E-value=0.0018  Score=46.13  Aligned_cols=33  Identities=24%  Similarity=0.519  Sum_probs=31.0

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.|+++|+|.+++++.|+.|..||+|+++..
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~   38 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEA   38 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEEE
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence            468999999999999999999999999999985

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=96.71  E-value=0.0054  Score=56.50  Aligned_cols=68  Identities=21%  Similarity=0.332  Sum_probs=56.2

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe----cCeeeeeecCCCeEEEEEecCCCCcccCCCeE
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ----LGGEIPIESDIAGEVIKILRKDGDPIGYGDPL  257 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa----mK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L  257 (271)
                      ...++||..|.|+           ++++.|+.|++||+|+.+-.    +....+|+||.+|.|.-..  ..-.|..|+.|
T Consensus       257 ~~~~~a~~~G~~~-----------~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l  323 (332)
T 2qj8_A          257 SDQLKSPSPGIFE-----------PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEV  323 (332)
T ss_dssp             GGEEECSSSEEEE-----------ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEE
T ss_pred             ceEEeCCCCeEEE-----------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEE
Confidence            3568999999886           24789999999999999965    5567899999999998775  55678889999


Q ss_pred             EEEec
Q 024168          258 IVILP  262 (271)
Q Consensus       258 ~~I~~  262 (271)
                      |.|..
T Consensus       324 ~~ia~  328 (332)
T 2qj8_A          324 AILAR  328 (332)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            98854

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=96.64  E-value=0.0021  Score=46.35  Aligned_cols=33  Identities=36%  Similarity=0.550  Sum_probs=31.1

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.|+++|+|.++++++|+.|..||+|+.|..
T Consensus         9 ~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~   41 (77)
T 1dcz_A            9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEA   41 (77)
T ss_dssp             SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEE
T ss_pred             eEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEc
Confidence            478999999999999999999999999999975

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=96.52  E-value=0.0027  Score=49.49  Aligned_cols=34  Identities=26%  Similarity=0.514  Sum_probs=31.6

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|.|+++|+|.++.+++|+.|..||+|++|...
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            4689999999999999999999999999999864

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=96.51  E-value=0.0014  Score=48.89  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||++|+|.+++++.|+.|..||+|+.|+.
T Consensus         6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~   38 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV   38 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCEEEEEEC
T ss_pred             ceEECCCCEEEEEEECCCCCEECCCCEEEEEEe
Confidence            369999999999999999999999999999984

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=96.10  E-value=0.0058  Score=53.87  Aligned_cols=53  Identities=19%  Similarity=0.189  Sum_probs=39.5

Q ss_pred             CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      +.|+.-..=..-|.|++. -...|.++++|+|.++++++||.|..||+|++|..
T Consensus         3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~   55 (277)
T 2f1m_A            3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP   55 (277)
T ss_dssp             -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred             eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECc
Confidence            334444444556788875 35689999999999999999999999999999975

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=95.90  E-value=0.006  Score=46.80  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=31.5

Q ss_pred             eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ...|.|+++|+|.+++++.|+.|..||+|++|..
T Consensus        14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~   47 (99)
T 2ejm_A           14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIA   47 (99)
T ss_dssp             CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEES
T ss_pred             ceEEecCCCEEEEEEECCCCCEECCCCEEEEEEc
Confidence            3578999999999999999999999999999985

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=95.87  E-value=0.0051  Score=46.84  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.|+++|+|.+++++.||.|..||+|+.|+.
T Consensus        26 ~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~   58 (94)
T 2jku_A           26 SVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEA   58 (94)
T ss_dssp             CCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC
T ss_pred             eEEECCCCEEEEEEECCCCCEEcCCCEEEEEec
Confidence            468999999999999999999999999999985

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=95.81  E-value=0.0096  Score=51.99  Aligned_cols=51  Identities=20%  Similarity=0.343  Sum_probs=41.7

Q ss_pred             CCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe-----------------------------cCCCCccc
Q 024168          202 KRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL-----------------------------RKDGDPIG  252 (271)
Q Consensus       202 P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il-----------------------------v~~Gd~V~  252 (271)
                      .++..+|+.|+.|++||+||.=.      +|.++++|+|.+..                             ++||+.|.
T Consensus        19 yGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~   92 (193)
T 2xha_A           19 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK   92 (193)
T ss_dssp             TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEEC
T ss_pred             CCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEc
Confidence            45677899999999999999765      99999999997543                             67777777


Q ss_pred             CCCeEE
Q 024168          253 YGDPLI  258 (271)
Q Consensus       253 ~Gq~L~  258 (271)
                      .|++|+
T Consensus        93 ~GdvLA   98 (193)
T 2xha_A           93 QGLPLS   98 (193)
T ss_dssp             TTSBSS
T ss_pred             CCCEEe
Confidence            777765

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=95.69  E-value=0.007  Score=44.11  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             eeeecCCCeEEEEE-------ecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKI-------LRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~I-------lv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||++|+|.++       +++.|+.|..||+|+.|+.
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~   44 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEA   44 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEE
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEe
Confidence            36899999999998       9999999999999999985

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=95.59  E-value=0.0091  Score=54.47  Aligned_cols=48  Identities=21%  Similarity=0.296  Sum_probs=41.1

Q ss_pred             cCCeEEEEEec-CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          216 EGQVLCYIEQL-GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       216 ~Gq~l~~IEam-K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .-..-|.|++. .-...|.++++|+|.++++++|+.|..||+|++|...
T Consensus        43 ~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~   91 (359)
T 3lnn_A           43 PFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA   91 (359)
T ss_dssp             EEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred             eEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            33456788875 4567899999999999999999999999999999864

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=95.52  E-value=0.015  Score=52.63  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=43.4

Q ss_pred             cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      |+.|+.-..=..-|.|++.. ...|.++++|+|.++++++|+.|..||+|++|.+.
T Consensus        11 v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   65 (341)
T 3fpp_A           11 VRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   65 (341)
T ss_dssp             --CCCCCCEEEEEEEEEESS-EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred             EEEeceeEEEEEEEEEEeeE-EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence            45555444445667888764 46899999999999999999999999999999753

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=95.03  E-value=0.051  Score=47.06  Aligned_cols=65  Identities=14%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeE----ecCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTV----REGQVLCYIEQLGGEIPIESDIAGEVI-----------------  241 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V----~~Gq~l~~IEamK~~~~V~Ap~~G~V~-----------------  241 (271)
                      ..|.||+.|.+..-.           ++-|.|    --|+-+++.=..   ..|.||++|+|.                 
T Consensus        35 ~~i~aPv~G~vi~L~-----------eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~  100 (183)
T 3our_B           35 IEIIAPLSGEIVNIE-----------DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGV  100 (183)
T ss_dssp             EEEECSSCEEEEEGG-----------GSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEeecceEEEEch-----------hCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCC
Confidence            579999999987432           444444    137777776433   479999999998                 


Q ss_pred             ------------------EEecCCCCcccCCCeEEEEe
Q 024168          242 ------------------KILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       242 ------------------~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                                        +.+|+.||.|..||+|+++-
T Consensus       101 EvLIHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD  138 (183)
T 3our_B          101 ELFVHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD  138 (183)
T ss_dssp             EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEEEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence                              55688999999999999875

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=95.03  E-value=0.011  Score=42.78  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             cCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          234 SDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       234 Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ++.+|+|.+++++.||.|..||+|+.++..
T Consensus        12 ~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~   41 (77)
T 2l5t_A           12 GVTEGEIVRWDVKEGDMVEKDQDLVEVMTD   41 (77)
T ss_dssp             SCCCEEEEECSCCTTCEECSCCCCCEEESS
T ss_pred             CCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence            568999999999999999999999999853

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=94.99  E-value=0.025  Score=53.36  Aligned_cols=51  Identities=20%  Similarity=0.343  Sum_probs=43.2

Q ss_pred             CCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe-----------------------------cCCCCccc
Q 024168          202 KRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL-----------------------------RKDGDPIG  252 (271)
Q Consensus       202 P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il-----------------------------v~~Gd~V~  252 (271)
                      -++..+|+.|+.|++||+||.=+      ||.|+++|+|.+..                             ++||+.|.
T Consensus        59 yga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~  132 (352)
T 2xhc_A           59 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK  132 (352)
T ss_dssp             TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEEC
T ss_pred             CCCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEc
Confidence            35667899999999999999876      89999999886543                             78888888


Q ss_pred             CCCeEE
Q 024168          253 YGDPLI  258 (271)
Q Consensus       253 ~Gq~L~  258 (271)
                      .|++|+
T Consensus       133 ~G~vla  138 (352)
T 2xhc_A          133 QGLPLS  138 (352)
T ss_dssp             TTCBSB
T ss_pred             cCcEEe
Confidence            888887

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=94.61  E-value=0.02  Score=52.93  Aligned_cols=44  Identities=20%  Similarity=0.322  Sum_probs=37.4

Q ss_pred             CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ...|.|++.. ...|.++++|+|.++++++|+.|..||+|++|..
T Consensus        33 ~~~G~v~~~~-~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~   76 (369)
T 1vf7_A           33 ELPGRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   76 (369)
T ss_dssp             EEEEECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEEEEEEeee-EEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            3456667643 4689999999999999999999999999999975

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=94.45  E-value=0.032  Score=40.62  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=28.2

Q ss_pred             eecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          232 IESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       232 V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      +-++..|+|.+++++.||.|..||+|+.++.
T Consensus        10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~   40 (81)
T 1gjx_A           10 IGGHENVDIIAVEVNVGDTIAVDDTLITLET   40 (81)
T ss_dssp             CSSCSSEEEEEECCCSSCBCCSSCCCEEEEC
T ss_pred             CCCCCcEEEEEEEcCCCCEECCCCEEEEEEe
Confidence            4467899999999999999999999999974

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=94.42  E-value=0.054  Score=40.24  Aligned_cols=28  Identities=29%  Similarity=0.306  Sum_probs=25.9

Q ss_pred             CCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          235 DIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       235 p~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ...|+|.+++++.||.|..||+|+.|+.
T Consensus        17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~   44 (87)
T 3crk_C           17 MTMGTVQRWEKKVGEKLSEGDLLAEIET   44 (87)
T ss_dssp             CCEEEEEEECSCTTCEECTTCEEEEEEC
T ss_pred             CCcEEEEEEEcCCCCEEcCCCEEEEEEC
Confidence            3589999999999999999999999985

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=94.37  E-value=0.045  Score=41.51  Aligned_cols=27  Identities=19%  Similarity=0.170  Sum_probs=25.6

Q ss_pred             CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          236 IAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .+|+|.+++++.||.|..||+|+.|+.
T Consensus        17 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~   43 (93)
T 1k8m_A           17 REVTVKEWYVKEGDTVSQFDSICEVQS   43 (93)
T ss_dssp             CCEEEEEECCCTTCEECSSSCCEEEEC
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEc
Confidence            589999999999999999999999985

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=94.29  E-value=0.039  Score=43.24  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             eeeeeecC------CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          228 GEIPIESD------IAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       228 ~~~~V~Ap------~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      +..+|+.|      ..|+|.+++++.||.|..||+|+.|+.
T Consensus         6 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~   46 (108)
T 2dne_A            6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVET   46 (108)
T ss_dssp             CCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEEC
T ss_pred             cceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEc
Confidence            34455544      589999999999999999999999985

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=94.16  E-value=0.052  Score=51.22  Aligned_cols=53  Identities=15%  Similarity=0.113  Sum_probs=40.8

Q ss_pred             CCeEecCCeEEEEEec-CeeeeeecCCCeEEEEEec-CCCCcccCCCeEEEEecC
Q 024168          211 KQTVREGQVLCYIEQL-GGEIPIESDIAGEVIKILR-KDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       211 Gd~V~~Gq~l~~IEam-K~~~~V~Ap~~G~V~~Ilv-~~Gd~V~~Gq~L~~I~~~  263 (271)
                      |+.-..=...|.|+.. .-...|.++++|+|.++.+ ++||.|..||+|++|...
T Consensus       102 ~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~  156 (413)
T 3ne5_B          102 GPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP  156 (413)
T ss_dssp             ECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred             eecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence            3333334456677642 3457899999999999998 999999999999999843

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=94.09  E-value=0.025  Score=41.08  Aligned_cols=29  Identities=21%  Similarity=0.262  Sum_probs=26.8

Q ss_pred             cCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          234 SDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       234 Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ++.+|+|.+++++.||.|..||+|+.++.
T Consensus        12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~   40 (79)
T 1ghj_A           12 SIADGTVATWHKKPGEAVKRDELIVDIET   40 (79)
T ss_dssp             SCSCEEECCCSSCTTSEECSSCEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCCEECCCCEEEEEEc
Confidence            45799999999999999999999999985

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=94.03  E-value=0.017  Score=52.70  Aligned_cols=55  Identities=20%  Similarity=0.299  Sum_probs=43.8

Q ss_pred             cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      |+.|+.-..=..-|.|++.. ...|.++++|+|.++++++|+.|..||+|++|...
T Consensus        12 v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   66 (369)
T 4dk0_A           12 VKRGNIEKNVVATGSIESIN-TVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST   66 (369)
T ss_dssp             CCEECCCCCCEEEEEEECSS-CCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred             EEecceeEEEEEeEEEEeee-eEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence            44455555555667787654 46899999999999999999999999999999753

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=93.85  E-value=0.0048  Score=45.85  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=29.9

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      .+|++|.-|+|.+++++.|+.|..||+|+.|+.
T Consensus         3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~   35 (85)
T 2k7v_A            3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEG   35 (85)
T ss_dssp             SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSC
T ss_pred             cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEc
Confidence            478888889999999999999999999998864

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=93.75  E-value=0.025  Score=49.34  Aligned_cols=51  Identities=18%  Similarity=0.255  Sum_probs=43.3

Q ss_pred             CCCCCc--cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEE--------------------------E--ecCCCCcc
Q 024168          202 KRAPPS--CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIK--------------------------I--LRKDGDPI  251 (271)
Q Consensus       202 P~~~~~--V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~--------------------------I--lv~~Gd~V  251 (271)
                      .++-..  |+.|+.|++||+|+      -...|-|+++|+|.-                          +  +|.+||.|
T Consensus        77 vgA~l~~~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V  150 (193)
T 2xha_A           77 ESAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV  150 (193)
T ss_dssp             GGGCCCTTCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred             CCCEEEEEcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEE
Confidence            356777  99999999999999      235789999998862                          4  89999999


Q ss_pred             cCCCeEE
Q 024168          252 GYGDPLI  258 (271)
Q Consensus       252 ~~Gq~L~  258 (271)
                      +.|++|.
T Consensus       151 ~~Ge~L~  157 (193)
T 2xha_A          151 KQGEMLA  157 (193)
T ss_dssp             CTTCEEE
T ss_pred             CCCCCcc
Confidence            9999997

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=93.46  E-value=0.093  Score=44.81  Aligned_cols=41  Identities=24%  Similarity=0.294  Sum_probs=36.5

Q ss_pred             CccCCCCeEecCCeEEEEEecCeee-eeecCCCeEEEEEecC
Q 024168          206 PSCKEKQTVREGQVLCYIEQLGGEI-PIESDIAGEVIKILRK  246 (271)
Q Consensus       206 ~~V~~Gd~V~~Gq~l~~IEamK~~~-~V~Ap~~G~V~~Ilv~  246 (271)
                      +++.+|+.|.+|+.++.|.+.|... -|+||++|+|+-+.--
T Consensus       114 ~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~  155 (169)
T 3d4r_A          114 PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI  155 (169)
T ss_dssp             ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred             EEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence            5789999999999999999999876 5999999999988633

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.32  E-value=0.071  Score=40.89  Aligned_cols=27  Identities=33%  Similarity=0.615  Sum_probs=25.4

Q ss_pred             CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          236 IAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+|.+++++.||.|..||+|+.|+.
T Consensus        20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~   46 (98)
T 2dnc_A           20 EEGNIVKWLKKEGEAVSAGDALCEIET   46 (98)
T ss_dssp             SEECEEEESSCTTCEECTTSEEEEEEC
T ss_pred             ccEEEEEEEcCCCCEeCCCCEEEEEEc
Confidence            589999999999999999999999985

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=93.11  E-value=0.064  Score=38.77  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=25.5

Q ss_pred             CeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          237 AGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       237 ~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      +|+|.+++++.|+.|..||+|+.|+..
T Consensus        14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~   40 (80)
T 1qjo_A           14 EVEVTEVMVKVGDKVAAEQSLITVEGD   40 (80)
T ss_dssp             CEEEEECCCCTTCEECBTSEEEEEESS
T ss_pred             CEEEEEEEcCCCCEECCCCEEEEEEcC
Confidence            999999999999999999999999854

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=92.90  E-value=0.12  Score=41.92  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=25.3

Q ss_pred             CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          236 IAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+|.+++++.||.|..||+|+.|+.
T Consensus        40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa   66 (128)
T 1y8o_B           40 TMGTVQRWEKKVGEKLSEGDLLAEIET   66 (128)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEEC
T ss_pred             ccEEEEEEecCCCCEecCCCEEEEEEc
Confidence            579999999999999999999999985

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=92.82  E-value=0.081  Score=44.38  Aligned_cols=79  Identities=13%  Similarity=0.091  Sum_probs=46.5

Q ss_pred             eEEeCCcCeEEEecc-------------------------cccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCC
Q 024168          183 VILESPKVGYFRRSR-------------------------TIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIA  237 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~-------------------------s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~  237 (271)
                      ..|+||..|++..-.                         .-+|..-..+|++||+|++||.|+.+.-..+...=.+...
T Consensus        45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t  124 (154)
T 2gpr_A           45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS  124 (154)
T ss_dssp             SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence            479999999886421                         0112233468999999999999999873222211111111


Q ss_pred             eE------EEEEecCCCCcccCCCeEEEEe
Q 024168          238 GE------VIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       238 G~------V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      =+      +..+....+..|..|++|+.++
T Consensus       125 ~vvvtn~~~~~~~~~~~~~v~~g~~~~~~~  154 (154)
T 2gpr_A          125 PIIFTNNGGKTLEIVKMGEVKQGDVVAILK  154 (154)
T ss_dssp             EEEEEECSSCCCSCBCCEEECTTCEEEEEC
T ss_pred             EEEEECCCcceEEEccCceEcCCCEEEEeC
Confidence            11      1122233455678899988763

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=92.57  E-value=0.099  Score=52.86  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=31.5

Q ss_pred             eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ...|.||..|+|.+++|+.||.|+.||+|+.|+.
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEa  645 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEA  645 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEEC
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEe
Confidence            3469999999999999999999999999999984

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=92.35  E-value=0.19  Score=36.23  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=29.9

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL  226 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam  226 (271)
                      ...|+||..|++..          .++++|+.|..|++|+.|+..
T Consensus        41 ~~~i~Ap~~G~v~~----------~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           41 SMEVPSPKAGVVKS----------VSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEEECSSSSEEEE----------ESCCTTCEEETTSEEEEEECC
T ss_pred             EEEEECCCCEEEEE----------EEeCCCCEECCCCEEEEEecC
Confidence            46899999999864          468999999999999998753

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=91.58  E-value=0.25  Score=42.52  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=40.2

Q ss_pred             CCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCc
Q 024168          202 KRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDP  250 (271)
Q Consensus       202 P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~  250 (271)
                      .++..+|+.|+.|++||+||..  ++-..+|-++++|+|.---+.+|..
T Consensus        60 yGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t  106 (190)
T 2auk_A           60 YGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT  106 (190)
T ss_dssp             TTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred             CCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence            5678899999999999999966  5788899999999998777666643

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=90.70  E-value=0.041  Score=40.15  Aligned_cols=28  Identities=21%  Similarity=0.213  Sum_probs=25.8

Q ss_pred             CCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          235 DIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       235 p~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..+|+|.+++++.||.|..||+|+.|+.
T Consensus        14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~   41 (80)
T 1pmr_A           14 VADATVATWHKKPGDAVVRDEVLVEIET   41 (80)
T ss_dssp             CSCEECCBCCCCTTCCBSSSCCBCBCCS
T ss_pred             CccEEEEEEECCCcCEECCCCEEEEEEc
Confidence            4689999999999999999999999974

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=89.55  E-value=0.23  Score=50.88  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=31.1

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||+.|+|.+++|+.||.|..||+|+.|+.
T Consensus       650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEa  682 (718)
T 3bg3_A          650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSA  682 (718)
T ss_dssp             SCEECSSCEEEEEECSCTTCCBCTTCCCEEEES
T ss_pred             ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEec
Confidence            469999999999999999999999999999984

>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A

Probab=89.00  E-value=0.53  Score=43.71  Aligned_cols=65  Identities=9%  Similarity=0.062  Sum_probs=49.4

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.+|..|.+..-        .+.++.|+.|++||+|+.+-.    .+|.+|.+|.+.-.  . .-.|..|+.++.+-.
T Consensus       264 ~~v~a~~~g~~~~~--------~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i~~  328 (350)
T 2bco_A          264 RTIVRLHDDFDFMF--------DDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRHVAIGQRAALMVC  328 (350)
T ss_dssp             EEEECCSSSEEESS--------CTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTTCCTTSEEEEEEE
T ss_pred             EEEEcCCCCeEEec--------cccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCCCCCCcEEEEEEE
Confidence            46788877765422        235689999999999999853    78999999987653  2 468889998777653

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=88.88  E-value=0.32  Score=52.14  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=31.2

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||..|+|.+++|+.||.|+.||+|+.|+.
T Consensus      1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iea 1110 (1150)
T 3hbl_A         1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEA 1110 (1150)
T ss_dssp             SEEECSSSEEEEEECCCTTCEECTTCEEEEEES
T ss_pred             ceeecCceEEEEEEEeCCCCEECCCCEEEEEEe
Confidence            479999999999999999999999999999984

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=88.51  E-value=0.13  Score=48.42  Aligned_cols=51  Identities=18%  Similarity=0.236  Sum_probs=39.9

Q ss_pred             CCCCCc--cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEE------------------E----------EecCCCCcc
Q 024168          202 KRAPPS--CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVI------------------K----------ILRKDGDPI  251 (271)
Q Consensus       202 P~~~~~--V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~------------------~----------Ilv~~Gd~V  251 (271)
                      .++-..  |+.|+.|++||+|+     | ...|-|+++|+|.                  +          ++|.+||.|
T Consensus       117 ~ga~l~~~v~~g~~v~~G~vla-----k-~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V  190 (352)
T 2xhc_A          117 ESAGIEPGLRVGTKVKQGLPLS-----K-NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV  190 (352)
T ss_dssp             GGGCBCTTCCTTCEECTTCBSB-----S-SSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred             CCcEEEEecCCCCEEccCcEEe-----c-CceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEE
Confidence            356677  99999999999998     2 3567788888776                  1          137788999


Q ss_pred             cCCCeEE
Q 024168          252 GYGDPLI  258 (271)
Q Consensus       252 ~~Gq~L~  258 (271)
                      ..|++|.
T Consensus       191 ~~G~~l~  197 (352)
T 2xhc_A          191 KQGEMLA  197 (352)
T ss_dssp             CTTCEEE
T ss_pred             eCCCCcc
Confidence            9999887

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=88.03  E-value=0.39  Score=51.90  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=30.9

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||+.|+|.+++|+.||.|+.||+|+.|+.
T Consensus      1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEa 1200 (1236)
T 3va7_A         1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEA 1200 (1236)
T ss_dssp             EEEECSSCEEEEEESSCTTCEECSSCEEEEEEE
T ss_pred             cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEe
Confidence            359999999999999999999999999999984

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=86.12  E-value=0.55  Score=50.41  Aligned_cols=33  Identities=18%  Similarity=0.427  Sum_probs=28.1

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|.||+.|+|.+++++.||.|..||+|+.|+.
T Consensus      1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A         1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp             TEEECSSCEEEEEECCSSCCCC---CEEEEEEC
T ss_pred             ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEc
Confidence            469999999999999999999999999999973

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=85.23  E-value=1.1  Score=49.06  Aligned_cols=38  Identities=16%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             CCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEE
Q 024168          202 KRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVI  241 (271)
Q Consensus       202 P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~  241 (271)
                      .++..+|+.||.|++||+||.-+  .-..+|.|+++|+|.
T Consensus       999 ~gs~l~v~~g~~V~~g~~ia~wD--p~~~piise~~G~v~ 1036 (1407)
T 3lu0_D          999 YGAVLAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVR 1036 (1407)
T ss_dssp             TTCEESSCSSCEECTTCEEEECC--SSCCCEECSSCEEEE
T ss_pred             CCCEEEEcCCCEecCCCEEEEEe--cCceeEEeccceEEE
Confidence            35667899999999999999875  556799999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	6e-13
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	5e-09
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	1e-08
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	2e-08
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-07
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-07
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-07
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-06
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	6e-06
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	3e-04

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 60.7 bits (147), Expect = 6e-13
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
           I+ SP VG F R+       A    +  Q V  G  LC +E +     IE+D +G V  I
Sbjct: 6   IVRSPMVGTFYRT---PSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 62

Query: 244 LRKDGDPIGYGDPLIVI 260
           L + G P+ + +PL+VI
Sbjct: 63  LVESGQPVEFDEPLVVI 79

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
            K    V E  VLC ++     + I S + G+V++IL  +G     G  LI +
Sbjct: 23  VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 75

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 201 GKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           G  +    KE  TV+ GQ +  +E +  E  I +   G+V K+L K+ D +  G  LI I
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           KE  TV +   +C ++     + I S   G + K+     D    G PL+ I
Sbjct: 27  KEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263
            K    +   Q L  +E     + + S  AG V  +  K GD +  GD +I + P+
Sbjct: 20  VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
               T+     L  +E     + + +++AG V ++  K GD I  G  ++V+
Sbjct: 24  NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVV 75

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
            K    V   Q L  +E     + + +  AG V ++    GD +  G  +++ 
Sbjct: 22  VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 74

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
           K    V   +VL  IE     + + +   G +  +L  +G  +     L  +
Sbjct: 25  KPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRL 76

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 10/53 (18%), Positives = 27/53 (50%)

Query: 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
            K  + V+  +++  IE     + + ++  G + +I++ +GD +  G+ L  +
Sbjct: 23  KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKL 75

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVILPS 263
            K  + + EG +L  IE     I  E    G + KIL  +G   +  G PL +I+  
Sbjct: 27  KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.9
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.77
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.63
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.57
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.53
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.49
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.48
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.45
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.37
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.34
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.81
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.75
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.98
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	96.36
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	95.64
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	95.48
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	95.14
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	95.1
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	94.94
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	94.8
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	94.47
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	94.27
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	93.2
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	93.13
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	92.87
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	92.63
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	88.22
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	88.19
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	87.96
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	80.03

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=6.4e-24  Score=160.58  Aligned_cols=76  Identities=36%  Similarity=0.557  Sum_probs=73.3

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      ..|+|||+|+||+.++   |+.++||++||.|++||+||+||+||++++|+||++|+|.+|++++|+.|++||+||.|+
T Consensus         5 ~~I~aPm~G~~~~~~~---p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_           5 HIVRSPMVGTFYRTPS---PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSSEEEESSSS---TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CEEeCCCcEEEEecCC---CCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            4799999999999986   899999999999999999999999999999999999999999999999999999999985

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.77  E-value=5.2e-19  Score=132.05  Aligned_cols=68  Identities=31%  Similarity=0.401  Sum_probs=65.7

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI  260 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I  260 (271)
                      ..|+|||.|++++          |+|++||.|++||+||+||+||+.++|+||++|+|.+|++++|+.|++||+||+|
T Consensus         9 ~~v~ap~~G~v~~----------~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_           9 GEIPAPLAGTVSK----------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             SEEEBSSSCEEEE----------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             CEEECCCCcEEEE----------EEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            4799999999974          8999999999999999999999999999999999999999999999999999987

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.63  E-value=3.6e-16  Score=116.93  Aligned_cols=73  Identities=25%  Similarity=0.292  Sum_probs=65.8

Q ss_pred             eEEeCCcCe---EEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEE
Q 024168          183 VILESPKVG---YFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIV  259 (271)
Q Consensus       183 ~~V~sP~vG---~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~  259 (271)
                      ..|+.|..|   ++.          +|+|++||.|++||+||+||+||+.++|+|+++|+|.+++++.|+.|..|++|+.
T Consensus         2 ~~i~~P~~g~~g~i~----------~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~   71 (79)
T d1iyua_           2 EIIRVPDIGGDGEVI----------ELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIE   71 (79)
T ss_dssp             EEEECCCCSSEEEEE----------EECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEE
T ss_pred             CEEECCCCCCCEEEE----------EEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEE
Confidence            357778544   553          5999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCC
Q 024168          260 ILPSFP  265 (271)
Q Consensus       260 I~~~~~  265 (271)
                      |++...
T Consensus        72 ie~~~~   77 (79)
T d1iyua_          72 LEPAAG   77 (79)
T ss_dssp             EECCCS
T ss_pred             EecCcc
Confidence            998653

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=3.9e-15  Score=111.45  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=65.0

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      +.|+.|..|.-.      +...+|++++||.|++||+||+||+||+.++|+||.+|+|.+++++.|+.|..|++|+.|+.
T Consensus         3 ~ei~~P~lG~~~------~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   76 (80)
T d1qjoa_           3 KEVNVPDIGGDE------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             EEECCCCCSSSC------EEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             eEEECCCCCCCe------EEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            457777766210      02246999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 024168          263 S  263 (271)
Q Consensus       263 ~  263 (271)
                      +
T Consensus        77 e   77 (80)
T d1qjoa_          77 E   77 (80)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.53  E-value=7.2e-15  Score=109.93  Aligned_cols=60  Identities=18%  Similarity=0.254  Sum_probs=57.8

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .+|++++||.|++||+||.||+||+.++|+||.+|+|.+|+++.||.|..|++|+.|...
T Consensus        19 ~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_          19 ATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             CCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             EEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            579999999999999999999999999999999999999999999999999999999754

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.49  E-value=7.3e-16  Score=115.72  Aligned_cols=76  Identities=21%  Similarity=0.285  Sum_probs=66.4

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+.|..|.+..     +...+|++++||.|++||+||.||+||+.++|+||.+|+|.+|+++.|+.|..|++|+.|++
T Consensus         3 iei~~P~lg~~~~-----~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~   77 (81)
T d1gjxa_           3 VELKVPDIGGHEN-----VDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             EECCCCCCSSCSS-----EEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             EEEECCCCCCCcE-----EEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            4567777774321     13467999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 024168          263 S  263 (271)
Q Consensus       263 ~  263 (271)
                      +
T Consensus        78 ~   78 (81)
T d1gjxa_          78 E   78 (81)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.6e-14  Score=107.99  Aligned_cols=61  Identities=23%  Similarity=0.232  Sum_probs=58.3

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF  264 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~  264 (271)
                      .+|++++||.|++||+||.||+||+.++|+||++|+|.+++++.|+.|..|++|+.|+.+.
T Consensus        22 ~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~~   82 (87)
T d1k8ma_          22 KEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (87)
T ss_dssp             EEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             EEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            3599999999999999999999999999999999999999999999999999999998654

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.45  E-value=7.5e-15  Score=110.14  Aligned_cols=59  Identities=27%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             CCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          205 PPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       205 ~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      .|+|++||.|++||+||.||+||+.++|.||.+|+|.+++++.||.|..|++|+.|+.+
T Consensus        20 ~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_          20 KWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             ECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred             EEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            59999999999999999999999999999999999999999999999999999998754

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.1e-14  Score=109.16  Aligned_cols=60  Identities=18%  Similarity=0.116  Sum_probs=57.6

Q ss_pred             CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ...|++++||.|++||+||.||+||+.++|+||.+|+|.+|+++.|+.|..|++|+.|+.
T Consensus        19 i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          19 VATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             EEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            467999999999999999999999999999999999999999999999999999999874

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=101.66  Aligned_cols=64  Identities=28%  Similarity=0.347  Sum_probs=58.5

Q ss_pred             CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEecCCCCC
Q 024168          204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVILPSFPGI  267 (271)
Q Consensus       204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~~~~~~~  267 (271)
                      ..|++++||.|++||+||.||++|+.++|.|+.+|+|.+++++.|+ .|..|++|+.|.....++
T Consensus        23 ~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~~~~~~   87 (102)
T d1y8ob1          23 QRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADI   87 (102)
T ss_dssp             EEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSGGGG
T ss_pred             EEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEecCCccc
Confidence            3699999999999999999999999999999999999999999997 699999999997554443

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.81  E-value=1.1e-05  Score=64.00  Aligned_cols=58  Identities=19%  Similarity=0.352  Sum_probs=48.8

Q ss_pred             cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCC
Q 024168          208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFP  265 (271)
Q Consensus       208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~  265 (271)
                      .++|+.|++|+.++.||+.|...+|.||++|+|+++.   ..+-+.+.   ||+ +|++|++..+
T Consensus        43 p~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~~l~~~P~lin~dpy~~gWl~~ik~~d~  107 (127)
T d1onla_          43 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDM  107 (127)
T ss_dssp             BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCG
T ss_pred             CCCCchhcCCCceEEEeeccceeeccCCccceEEEEhhhhhhCHHHhcCCCCCCCEEEEEEECCH
Confidence            4889999999999999999999999999999999994   33444443   554 9999998665

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.75  E-value=1.5e-05  Score=63.53  Aligned_cols=59  Identities=27%  Similarity=0.374  Sum_probs=50.2

Q ss_pred             cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCCC
Q 024168          208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFPG  266 (271)
Q Consensus       208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~~  266 (271)
                      -++|+.|++|+.++.||+.|...+|.||++|+|+++.   ..+-+.+.   ||+ +||+|++.+++
T Consensus        44 p~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~~l~~~P~llN~dpy~~gWl~~i~~~d~~  109 (131)
T d1hpca_          44 PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPD  109 (131)
T ss_dssp             CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSGG
T ss_pred             CCCCccccCCCceEEEEeecccccccCCcchhheeehhhhhhCHHHHhCCCCCCcEEEEEEECCHH
Confidence            3789999999999999999999999999999999994   44555553   666 99999987753

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.98  E-value=0.00034  Score=50.45  Aligned_cols=34  Identities=35%  Similarity=0.520  Sum_probs=31.6

Q ss_pred             eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|+||+.|+|.+++++.||.|..||+|+.++..
T Consensus         9 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~   42 (77)
T d1dcza_           9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM   42 (77)
T ss_dssp             SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred             CEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEcc
Confidence            4799999999999999999999999999999853

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.36  E-value=0.00072  Score=55.50  Aligned_cols=67  Identities=19%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG---------------------------------  228 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~---------------------------------  228 (271)
                      ...|.|+..|.+-          .++|++||.|++||+|+.|+....                                 
T Consensus        15 ~~~V~s~v~G~V~----------~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~   84 (237)
T d1vf7a_          15 IAEVRPQVNGIIL----------KRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQ   84 (237)
T ss_dssp             EEEECCSSCEEEE----------ECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred             EEEEEeecCEEEE----------EEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccc
Confidence            3579999999985          368999999999999999973211                                 


Q ss_pred             ------------------------eeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168          229 ------------------------EIPIESDIAGEVIKILRKDGDPIGYGDPLI  258 (271)
Q Consensus       229 ------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~  258 (271)
                                              ...|.||++|+|.++.+..|+.+..|..+.
T Consensus        85 ~~~~~~~~~~~a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~  138 (237)
T d1vf7a_          85 QYADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANA  138 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSC
T ss_pred             hhhhhhhhcchhHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcCCccee
Confidence                                    113889999999999999999998887443

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.014  Score=46.91  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=49.6

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVI-----------------  241 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~-----------------  241 (271)
                      ..|.||+.|.+..-           -++-|.|=.    |+-++++=..   ..|.||++|+|.                 
T Consensus         2 v~i~aP~~G~vi~L-----------~~v~D~vFs~~~mG~GvAI~P~~---~~v~AP~dG~V~~v~~T~HAigi~t~~G~   67 (150)
T d2f3ga_           2 IEIIAPLSGEIVNI-----------EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGV   67 (150)
T ss_dssp             EEEECSSSEEEECG-----------GGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEEecCceEEEc-----------ccCCChHHhcCCccCeEEEEeCC---CeEEeecCEEEEEECCCCCEEEEEeCCce
Confidence            46999999998742           344444433    7777876544   479999999998                 


Q ss_pred             ------------------EEecCCCCcccCCCeEEEEe
Q 024168          242 ------------------KILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       242 ------------------~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                                        +.+++.||.|..||+|+++-
T Consensus        68 eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D  105 (150)
T d2f3ga_          68 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  105 (150)
T ss_dssp             EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEEEEccchhhcCCcceEEEecCCCEECCCCEEEEEc
Confidence                              55688899999999999875

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.48  E-value=0.01  Score=42.42  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             CCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec
Q 024168          180 EGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL  226 (271)
Q Consensus       180 ~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam  226 (271)
                      .-...|+||..|++..          +++++||.|..||+|+.||..
T Consensus        39 K~~~~i~a~~~G~v~~----------i~v~~G~~V~~G~~l~~ie~~   75 (79)
T d1iyua_          39 KASMEVPSPKAGVVKS----------VSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             SCEEEEECSSSSEEEE----------ESCCTTCEEETTSEEEEEECC
T ss_pred             CcEEEEEeccccEEEE----------EeeCCCCEECCCCEEEEEecC
Confidence            3457899999999964          679999999999999999854

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=95.14  E-value=0.029  Score=45.14  Aligned_cols=65  Identities=12%  Similarity=0.187  Sum_probs=49.5

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeE----ecCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTV----REGQVLCYIEQLGGEIPIESDIAGEVI-----------------  241 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V----~~Gq~l~~IEamK~~~~V~Ap~~G~V~-----------------  241 (271)
                      ..|.||+.|.+..-           -++-|.|    --|+-+++.=..   ..|.||++|+|.                 
T Consensus         8 ~~i~aP~~G~vi~l-----------~~v~D~vFs~k~~G~G~aI~P~~---~~v~AP~dG~I~~i~~T~HAigi~t~~G~   73 (154)
T d2gpra_           8 LKVLAPCDGTIITL-----------DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGV   73 (154)
T ss_dssp             EEEECSSSEEEECG-----------GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSC
T ss_pred             eEEEecCCceEEEc-----------ccCCChhhccCCCcCeEEEEecC---CEEEEecCeEEEEECCCCcEEEEEeCCCC
Confidence            57999999999743           2334433    236777776543   579999999998                 


Q ss_pred             ------------------EEecCCCCcccCCCeEEEEe
Q 024168          242 ------------------KILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       242 ------------------~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                                        +.+++.||.|..||+|+++-
T Consensus        74 eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D  111 (154)
T d2gpra_          74 EILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             EEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEEEEcccccccCCceeEEEecCCCEEcCCCEEEEEc
Confidence                              56789999999999999885

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.0089  Score=42.92  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             eeeeecCC----CeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          229 EIPIESDI----AGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       229 ~~~V~Ap~----~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..+|+.|.    .|+|.+++++.||.|..||+|+.|+..
T Consensus         2 ~~ei~~P~lG~~~~~v~~~~v~~Gd~V~~g~~l~~iEt~   40 (80)
T d1qjoa_           2 VKEVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGD   40 (80)
T ss_dssp             EEEECCCCCSSSCEEEEECCCCTTCEECBTSEEEEEESS
T ss_pred             CeEEECCCCCCCeEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            34555554    579999999999999999999999853

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.0064  Score=43.98  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             eeeecCCCeEE-------EEEecCCCCcccCCCeEEEEec
Q 024168          230 IPIESDIAGEV-------IKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       230 ~~V~Ap~~G~V-------~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      +.|+||..|++       .+++++.||.|+.||+|+.|+.
T Consensus         5 ~~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iEa   44 (80)
T d1bdoa_           5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEA   44 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEE
T ss_pred             CEEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEEc
Confidence            36999999999       5789999999999999999984

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=94.80  E-value=0.028  Score=45.43  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             eEEeCCcCeEEEecccccCCCCCCccCCCCeE----ecCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168          183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTV----REGQVLCYIEQLGGEIPIESDIAGEVI-----------------  241 (271)
Q Consensus       183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V----~~Gq~l~~IEamK~~~~V~Ap~~G~V~-----------------  241 (271)
                      ..|.||+.|.+..-           -++.|.|    --|+-++++=..   ..|.||++|+|.                 
T Consensus        10 ~~i~aP~~G~vi~L-----------~~V~D~vFs~~~~G~G~aI~P~~---~~v~AP~~G~I~~i~~T~HAigi~t~~G~   75 (158)
T d1gpra_          10 EVFVSPITGEIHPI-----------TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGR   75 (158)
T ss_dssp             BCCBCSSSEEEEEG-----------GGSSSHHHHTTSSCEEEEEEESS---CEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEecCCcEEEEh-----------hhCCChHhccCCccceEEEEEcC---CEEEEeeCeEEEEEcCCCCEEEEEeCCCe
Confidence            35899999998743           2445544    237777776543   479999999998                 


Q ss_pred             ------------------EEecCCCCcccCCCeEEEEec
Q 024168          242 ------------------KILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       242 ------------------~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                                        +.+++.||.|..||+|+++-.
T Consensus        76 evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~  114 (158)
T d1gpra_          76 EILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL  114 (158)
T ss_dssp             EEEEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEECH
T ss_pred             EEEEEEeecccccCCcceEEEEcCCCEEcCCCEEEEeCH
Confidence                              557899999999999998853

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.47  E-value=0.025  Score=40.51  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=31.4

Q ss_pred             CCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe
Q 024168          179 DEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ  225 (271)
Q Consensus       179 ~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa  225 (271)
                      +.-...|.||..|++..          .++++||.|..|++|++|+.
T Consensus        41 ~K~~~ei~a~~~G~v~~----------i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          41 DKVVMEVLAEADGVIAE----------IVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             SSCEEEEECSSCEEEEE----------ESSCTTCEECTTCEEEEECC
T ss_pred             CceEEEEEeceeEEEEE----------EEcCCCCEECCCCEEEEEeC
Confidence            33457899999999853          57999999999999999974

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.023  Score=41.44  Aligned_cols=27  Identities=19%  Similarity=0.170  Sum_probs=25.2

Q ss_pred             CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          236 IAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+|.+++++.||.|..||+|+.++.
T Consensus        17 ~eg~i~~w~v~~Gd~V~~g~~l~~vEt   43 (87)
T d1k8ma_          17 REVTVKEWYVKEGDTVSQFDSICEVQS   43 (87)
T ss_dssp             CCEEEEEECCCTTCEECSSSCCEEEEC
T ss_pred             eeEEEEEEEcCCCCEEecCCEEEEEEc
Confidence            479999999999999999999999985

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.013  Score=42.25  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=29.6

Q ss_pred             ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe
Q 024168          182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ  225 (271)
Q Consensus       182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa  225 (271)
                      ...|.||..|++.          +.++++||.|+.||+||+||.
T Consensus        45 ~~ev~a~~~G~l~----------~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          45 VLEVPASADGILD----------AVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCCBCCSBCCCC----------BCTTCTTCEECSSSEEEBCCC
T ss_pred             EEEEeccCCEEEE----------EEEeCCCCEECCCCEEEEEeC
Confidence            3679999999984          468999999999999999873

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.13  E-value=0.024  Score=40.74  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=25.1

Q ss_pred             CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          236 IAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+|.+++++.||.|..||+|+.++.
T Consensus        14 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt   40 (80)
T d1laba_          14 HEGEIVKWFVKPGDEVNEDDVLCEVQN   40 (80)
T ss_dssp             CSEEEEECCCSSCCEECSSCCCEEEEC
T ss_pred             eeEEEEEEEeCCCCEEeeCcCEEEEEc
Confidence            369999999999999999999999985

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.042  Score=41.13  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.6

Q ss_pred             CCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168          236 IAGEVIKILRKDGDPIGYGDPLIVILPS  263 (271)
Q Consensus       236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~  263 (271)
                      ..|+|.+++++.||.|..||+|+.|+.+
T Consensus        18 ~eg~i~~w~v~~Gd~V~~gd~l~~vETd   45 (102)
T d1y8ob1          18 TMGTVQRWEKKVGEKLSEGDLLAEIETD   45 (102)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECS
T ss_pred             cEEEEEEEEeCCCCEEecCccEEEEEcC
Confidence            3699999999999999999999999853

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.63  E-value=0.04  Score=39.39  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=25.1

Q ss_pred             CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168          236 IAGEVIKILRKDGDPIGYGDPLIVILP  262 (271)
Q Consensus       236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~  262 (271)
                      ..|+|.+++++.||.|..||+|+.|+.
T Consensus        14 ~~~~v~~w~v~~Gd~V~~gd~l~~iEt   40 (81)
T d1gjxa_          14 ENVDIIAVEVNVGDTIAVDDTLITLET   40 (81)
T ss_dssp             SSEEEEEECCCSSCBCCSSCCCEEEEC
T ss_pred             cEEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            468999999999999999999999985

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=0.14  Score=40.77  Aligned_cols=60  Identities=20%  Similarity=0.311  Sum_probs=39.5

Q ss_pred             CCCCCCccCCCCeEecCCeEEEEEecC-------eeeeeecCCCeEEEEEecCCCCcccCCC-eEEEEe
Q 024168          201 GKRAPPSCKEKQTVREGQVLCYIEQLG-------GEIPIESDIAGEVIKILRKDGDPIGYGD-PLIVIL  261 (271)
Q Consensus       201 ~P~~~~~V~~Gd~V~~Gq~l~~IEamK-------~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq-~L~~I~  261 (271)
                      |..-..+|++||+|++||.|+.+.-..       +..+|.-.-......+....|+ |..|+ +|+.++
T Consensus        82 G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g~-v~~g~~~i~~i~  149 (150)
T d2f3ga_          82 GEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGS-VTVGETPVIRIK  149 (150)
T ss_dssp             TTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEETTGGGCSEEEECCSE-ECTTTSEEEEEE
T ss_pred             CcceEEEecCCCEECCCCEEEEEcHHHHHhcCCCCeeEEEEECcHhcceeeecCCc-EeeCCcEEEEEE
Confidence            455668899999999999999987322       2223332223334455556664 77776 798875

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=88.19  E-value=0.092  Score=42.26  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             cCCCCCCccCCCCeEecCCeEEEEEe
Q 024168          200 KGKRAPPSCKEKQTVREGQVLCYIEQ  225 (271)
Q Consensus       200 ~~P~~~~~V~~Gd~V~~Gq~l~~IEa  225 (271)
                      +|..-..+|+.||.|++||.|+.+.-
T Consensus        89 ~G~gF~~~v~~Gd~Vk~G~~L~~~D~  114 (158)
T d1gpra_          89 KGEGFTSFVSEGDRVEPGQKLLEVDL  114 (158)
T ss_dssp             TTTTEEECCCTTCEECTTCEEEEECH
T ss_pred             CCcceEEEEcCCCEEcCCCEEEEeCH
Confidence            34556789999999999999999874

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=87.96  E-value=0.098  Score=41.94  Aligned_cols=58  Identities=14%  Similarity=0.168  Sum_probs=35.8

Q ss_pred             CCCCCCccCCCCeEecCCeEEEEEecCee-------ee--eecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168          201 GKRAPPSCKEKQTVREGQVLCYIEQLGGE-------IP--IESDIAGEVIKILRKDGDPIGYGDPLIVIL  261 (271)
Q Consensus       201 ~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~-------~~--V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~  261 (271)
                      |..-..+|++||.|++||.|+.+.-..+.       .+  +......   .+.......|..|++|+.++
T Consensus        88 G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~---~~~~~~~g~V~~Gd~i~~ik  154 (154)
T d2gpra_          88 GNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGK---TLEIVKMGEVKQGDVVAILK  154 (154)
T ss_dssp             TCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSC---CCSCBCCEEECTTCEEEEEC
T ss_pred             CceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCc---eEEecccCcCcCCCEEEEeC
Confidence            34557889999999999999998732221       12  1111111   12222333688999999874

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.03  E-value=1.5  Score=32.13  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             EEecCCCCcccCCCeEEEEecCCC
Q 024168          242 KILRKDGDPIGYGDPLIVILPSFP  265 (271)
Q Consensus       242 ~Ilv~~Gd~V~~Gq~L~~I~~~~~  265 (271)
                      .++++-||.|+.|++|++|-..++
T Consensus        49 ~l~~k~Gd~V~~Gd~l~~i~~~~~   72 (103)
T d1brwa3          49 VLHKKIGDRVQKGEALATIHSNRP   72 (103)
T ss_dssp             EESCCTTCEECTTCEEEEEEESSS
T ss_pred             EEeccCCCEEcCCCeEEEEEcCCc
Confidence            345778999999999999986544