Citrus Sinensis ID: 024197

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
masrthldddddfggdfsanhnsrrsgskrsfgdieddeddifgsrkanskveetapgvATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFqnelfippgtspeprLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDeigrqneegetHQLSVKLALQKSLNAELKSQFEG
Flexible Loop (DISEMBL)
masrthldddddfggdfsanhnsrrsgskrsfgdieddeddifgsrkanskveetapgVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFippgtspepRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLknlveekdkkvkeLEENIaavsftanskmGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG
Low Complexity Region (SEG)
MASRTHLdddddfggdfSANHNSRRSGSKRsfgdieddeddifgsRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSeemlkeqlekakkkeaaFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRlknlveekdkkvkeleenIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG
Disordered region (IsUnstruct)
**********************************************************VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIP*******RLVINYLQT*******************AAFIVTFAKREQEIAEL***V**********LMQARRLLLDPAIHEEFRRLKNL****************AV**********************************************************
Disordered Region (DISOPRED)
******L**DDDFGGDFSA***************************************************************************WHSSF*********************************************IVTFAKREQEIAELKSAVRD****************LDPAIHEEFRRLKNLVE**********ENIAAV*****************TLQ*******************************LKS****
Disordered Region (DISEMBL)
*********DDDFGGDFSAN************GDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG
Disordered Region (DISPRO)
***************************************DDIFGSRK***********VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESxxxxxxxxxxxxxxxxxxxxxIQKWHSSFQNELFIPPGTSPEPRLVINYxxxxxxxxxxxxxxxxxxxxxxxxFIVTxxxxxxxxxxxxxxxxxxxxxLKPPLMQARRLLLDPAIHEExxxxxxxxxxxxxxxxxxxxxxxxxxxxANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9ZSZ8	330	FKBP12-interacting protei	yes	no	0.940	0.772	0.725	1e-106
Q4KLT6	393	Pre-mRNA-splicing regulat	N/A	no	0.638	0.440	0.352	2e-22
Q15007	396	Pre-mRNA-splicing regulat	yes	no	0.638	0.436	0.352	3e-22
Q9ER69	396	Pre-mRNA-splicing regulat	yes	no	0.553	0.378	0.38	3e-22
Q6P4K5	393	Pre-mRNA-splicing regulat	yes	no	0.638	0.440	0.352	4e-22
Q7SXL7	423	Pre-mRNA-splicing regulat	yes	no	0.630	0.404	0.356	9e-22
Q9Y091	536	Pre-mRNA-splicing regulat	yes	no	0.564	0.285	0.346	2e-18
Q28XY0	560	Pre-mRNA-splicing regulat	yes	no	0.564	0.273	0.346	4e-18

>sp|Q9ZSZ8|FIP37_ARATH FKBP12-interacting protein of 37 kDa OS=Arabidopsis thaliana GN=FIP37 PE=1 SV=1

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/262 (72%), Positives = 222/262 (84%), Gaps = 7/262 (2%)

Query: 10  DDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRE 69
           DDDFGGD SA + +R SG++RSFGD+EDDEDDIFGS          APGV TGMILSLR 
Sbjct: 7   DDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGSTT-------VAPGVRTGMILSLRG 59

Query: 70  SLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEM 129
           SL+NCKD LA+CQ ELE+AK+EIQKW S+FQNE F+P G SPEPR +I+Y+Q LKSSE+ 
Sbjct: 60  SLKNCKDDLASCQNELESAKTEIQKWKSAFQNESFVPAGKSPEPRFLIDYIQNLKSSEKS 119

Query: 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEF 189
           LKEQLE AK+KEA+ IV +AKREQE+AELKSAVRDLK+QLKP  MQARRLLLDPAIHEEF
Sbjct: 120 LKEQLEIAKRKEASCIVQYAKREQEMAELKSAVRDLKSQLKPASMQARRLLLDPAIHEEF 179

Query: 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETH 249
            RLKNLVEEKDKK+KEL++NIAAV+FT  SK GK LMAKC+TLQEEN+EIG Q  EG+ H
Sbjct: 180 SRLKNLVEEKDKKIKELQDNIAAVTFTPQSKNGKMLMAKCRTLQEENEEIGHQAAEGKIH 239

Query: 250 QLSVKLALQKSLNAELKSQFEG 271
           +L++KLA+QKS NAEL+SQFEG
Sbjct: 240 ELAIKLAMQKSQNAELRSQFEG 261

Essential protein required during endosperm development and embryogenesis. Involved in endoreduplication, especially in trichomes. May play a role in splicing events.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4KLT6|FL2D_XENLA Pre-mRNA-splicing regulator WTAP OS=Xenopus laevis GN=wtap PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 105/176 (59%), Gaps = 3/176 (1%)

Query: 92  IQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR 151
           +Q+W    Q E ++    +    L  N +  L+ SEE LK+Q +++ ++E   ++  A +
Sbjct: 27  LQRWK---QYEAYVQALENKYTDLNSNDVTGLRESEEKLKQQQQESARRENILVMRLATK 83

Query: 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211
           EQE+ E  + ++ LK   +P + Q R  ++DPAI+  F ++K  +E+   K+++ +  ++
Sbjct: 84  EQEMQECTNQIQHLKQVQQPSVAQLRATMVDPAINLFFIKMKAELEQTKDKLEQAQNELS 143

Query: 212 AVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267
           A  FT +S+ GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + ELKS
Sbjct: 144 AWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKS 199

May regulate cell-cycle by stabilizing cyclin mRNAs. May be involved in mRNA splicing regulation.

Xenopus laevis (taxid: 8355)

>sp|Q15007|FL2D_HUMAN Pre-mRNA-splicing regulator WTAP OS=Homo sapiens GN=WTAP PE=1 SV=2

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 3/176 (1%)

Query: 92  IQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR 151
           I +W    Q E ++         L  N +  L+ SEE LK+Q +++ ++E   ++  A +
Sbjct: 27  ILRWK---QYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQQQQESARRENILVMRLATK 83

Query: 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211
           EQE+ E  + ++ LK   +P + Q R  ++DPAI+  F ++K  +E+   K+++ +  ++
Sbjct: 84  EQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELS 143

Query: 212 AVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267
           A  FT +S+ GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + ELKS
Sbjct: 144 AWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKS 199

Regulates G2/M cell-cycle transition by binding to the 3' UTR of CCNA2, which enhances its stability. Impairs WT1 DNA-binding ability and inhibits expression of WT1 target genes. May be involved in mRNA splicing regulation.

Homo sapiens (taxid: 9606)

>sp|Q9ER69|FL2D_MOUSE Pre-mRNA-splicing regulator WTAP OS=Mus musculus GN=Wtap PE=2 SV=3

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 95/150 (63%)

Query: 118 NYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR 177
           N +  L+ SEE LK+Q +++ ++E   ++  A +EQE+ E  + ++ LK   +P + Q R
Sbjct: 50  NDVTGLRESEEKLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLR 109

Query: 178 RLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEEND 237
             ++DPAI+  F ++K  +E+   K+++ +  ++A  FT +S+ GK LMAKC+ L +EN 
Sbjct: 110 STMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQ 169

Query: 238 EIGRQNEEGETHQLSVKLALQKSLNAELKS 267
           E+GRQ  +G   QL  +LALQK  + ELKS
Sbjct: 170 ELGRQLSQGRIAQLEAELALQKKYSEELKS 199

Regulates G2/M cell-cycle transition by binding to the 3' UTR of CCNA2, which enhances its stability. Impairs WT1 DNA-binding ability and inhibits expression of WT1 target genes. May be involved in mRNA splicing regulation.

Mus musculus (taxid: 10090)

>sp|Q6P4K5|FL2D_XENTR Pre-mRNA-splicing regulator WTAP OS=Xenopus tropicalis GN=wtap PE=2 SV=1

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 104/176 (59%), Gaps = 3/176 (1%)

Query: 92  IQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR 151
           +Q+W    Q E ++    +    L  N +  L+ SEE LK+Q + + ++E   ++  A +
Sbjct: 27  LQRWK---QFEAYVQALENKYTDLNSNDVTGLRESEEKLKQQQQDSARRENILVMRLATK 83

Query: 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211
           EQE+ E  + ++ LK   +P + Q R  ++DPAI+  F ++K  +E+   K+++ +  ++
Sbjct: 84  EQEMQECTTQIQHLKQVQQPSVAQLRATMVDPAINLFFIKMKAELEQTKDKLEQAQNELS 143

Query: 212 AVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267
           A  FT +S+ GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + ELKS
Sbjct: 144 AWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKS 199

May regulate cell-cycle by stabilizing cyclin mRNAs. May be involved in mRNA splicing regulation.

Xenopus tropicalis (taxid: 8364)

>sp|Q7SXL7|FL2D_DANRE Pre-mRNA-splicing regulator WTAP OS=Danio rerio GN=wtap PE=2 SV=1

 Score =  103 bits (258), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 3/174 (1%)

Query: 94  KWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQ 153
           +W    Q+E ++    +    L  N +  LK SEE LK+Q +++ ++E   ++  A +EQ
Sbjct: 29  RWK---QHETYVQMLEAKYADLNSNDVTGLKESEEKLKQQQQESARRENILVMRLATKEQ 85

Query: 154 EIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213
           E+ E  + ++ LK   +P   Q R  ++DPAI+  F ++K  +E+   K+++ +  ++A 
Sbjct: 86  EMQECTTQIQYLKQVQQPSAAQLRSSMVDPAINLFFLKMKAELEQTKDKLEQAQNELSAW 145

Query: 214 SFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267
            FT +S+ GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + ELKS
Sbjct: 146 KFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKS 199

May regulate cell-cycle by stabilizing cyclin mRNAs. May be involved in mRNA splicing regulation.

Danio rerio (taxid: 7955)

>sp|Q9Y091|FL2D_DROME Pre-mRNA-splicing regulator female-lethal(2)D OS=Drosophila melanogaster GN=fl(2)d PE=1 SV=2

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 89/153 (58%)

Query: 114 RLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL 173
           RL+ + ++ LK  +  + +Q   A+++E   +   A +EQE  +  S + + KAQ  P  
Sbjct: 109 RLLEDEIENLKLEQVRMAQQCADAQRREKILMRRLANKEQEFQDYVSQIAEYKAQQAPTA 168

Query: 174 MQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQ 233
           +  R  LLDPA++  F RLK  ++    K++E +  ++A  FT +S  GK LMAKC+ L 
Sbjct: 169 LALRTALLDPAVNLLFERLKKELKATKAKLEETQNELSAWKFTPDSNTGKRLMAKCRLLY 228

Query: 234 EENDEIGRQNEEGETHQLSVKLALQKSLNAELK 266
           +EN+E+G+    G   +L  +LA+QKS + E+K
Sbjct: 229 QENEELGKMTSNGRLAKLETELAMQKSFSEEVK 261

Required for male and female viability, sex determination and dosage compensation. Involved in the female-specific splicing of Sxl transcripts. Required for proper inclusion of regulated exons in Ubx transcripts, leading to isoforms Ia/b and IIa/b.

Drosophila melanogaster (taxid: 7227)

>sp|Q28XY0|FL2D_DROPS Pre-mRNA-splicing regulator female-lethal(2)D OS=Drosophila pseudoobscura pseudoobscura GN=fl(2)d PE=3 SV=2

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 89/153 (58%)

Query: 114 RLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL 173
           RL+ + ++TLK  +  + +    A+++E   +   A +EQE  +  S + + KAQ  P  
Sbjct: 116 RLLEDEIETLKLEQVRMGQICADAQRREKILMRRLANKEQEFQDYVSQIAEYKAQQAPTA 175

Query: 174 MQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQ 233
           +  R  LLDPA++  F RLK  ++    K++E +  ++A  FT +S  GK LMAKC+ L 
Sbjct: 176 LALRTALLDPAVNLLFERLKKELKATKTKLEETQNELSAWKFTPDSNTGKRLMAKCRLLY 235

Query: 234 EENDEIGRQNEEGETHQLSVKLALQKSLNAELK 266
           +EN+E+G+    G   +L  +LA+QKS + E+K
Sbjct: 236 QENEELGKMTSNGRLAKLETELAMQKSFSEEVK 268

Required for male and female viability, sex determination and dosage compensation. Involved in the female-specific splicing of Sxl transcripts. Required for proper inclusion of regulated exons in Ubx transcripts, leading to isoforms Ia/b and IIa/b.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
297816722	336	predicted protein [Arabidopsis lyrata su	0.966	0.779	0.755	1e-112
255540573	338	FKBP12-interacting protein of 37 kDa, pu	0.977	0.784	0.793	1e-112
225456942	344	PREDICTED: FKBP12-interacting protein of	1.0	0.787	0.819	1e-111
356562704	340	PREDICTED: FKBP12-interacting protein of	0.985	0.785	0.758	1e-110
449440648	343	PREDICTED: FKBP12-interacting protein of	1.0	0.790	0.789	1e-107
449531199	270	PREDICTED: FKBP12-interacting protein of	0.996	1.0	0.792	1e-107
15232439	330	FKBP12 interacting protein 37 [Arabidops	0.940	0.772	0.725	1e-104
356513687	339	PREDICTED: FKBP12-interacting protein of	0.911	0.728	0.759	1e-101
357461873	276	FKBP12-interacting protein of 37 kDa [Me	0.985	0.967	0.690	2e-99
388497674	307	unknown [Lotus japonicus]	0.985	0.869	0.732	5e-97

>gi|297816722|ref|XP_002876244.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322082|gb|EFH52503.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/262 (75%), Positives = 230/262 (87%)

Query: 10  DDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRE 69
           DDDFGGD+SA + +R SG+KRSFGD+EDDEDDIFGS+K  +KVEE APGVATGMILSLRE
Sbjct: 7   DDDFGGDYSAANATRASGNKRSFGDLEDDEDDIFGSKKGRTKVEEAAPGVATGMILSLRE 66

Query: 70  SLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEM 129
           SLQNCKD LA+CQ ELE+AK+EIQKW S+FQNE F+P G SPEPR +I+Y+Q LKSSE  
Sbjct: 67  SLQNCKDDLASCQNELESAKTEIQKWKSAFQNESFVPAGKSPEPRFLIDYIQNLKSSERS 126

Query: 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEF 189
           LKEQLE AK+KEA+ IV +AKREQE+AELKSAVRDLK+QLKP  MQARRLLLDPAIHEEF
Sbjct: 127 LKEQLEIAKRKEASCIVQYAKREQEMAELKSAVRDLKSQLKPASMQARRLLLDPAIHEEF 186

Query: 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETH 249
            RLKNLVEEKDKK+KEL++NI+AV+FT  SK GK LMAKCKTLQEEN+EIG Q  EG+ H
Sbjct: 187 SRLKNLVEEKDKKIKELQDNISAVTFTPQSKNGKMLMAKCKTLQEENEEIGHQAAEGKIH 246

Query: 250 QLSVKLALQKSLNAELKSQFEG 271
           +L++KL +QKS NAEL+SQFEG
Sbjct: 247 ELAIKLTMQKSQNAELRSQFEG 268

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540573|ref|XP_002511351.1| FKBP12-interacting protein of 37 kDa, putative [Ricinus communis] gi|223550466|gb|EEF51953.1| FKBP12-interacting protein of 37 kDa, putative [Ricinus communis]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/271 (79%), Positives = 240/271 (88%), Gaps = 6/271 (2%)

Query: 1   MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVA 60
           MAS  HLDDDDDFGGDF  +HN RRSG+KRSFGD+EDDEDDIF S+K N+KVEETA    
Sbjct: 1   MASHNHLDDDDDFGGDFPGSHNGRRSGNKRSFGDLEDDEDDIFSSKKGNTKVEETA---- 56

Query: 61  TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYL 120
             MIL+LRESL+NCK+ L TCQ+ELEAAKSEIQKW S+F+NE F+P G SPEP+LVINYL
Sbjct: 57  --MILALRESLENCKNALTTCQMELEAAKSEIQKWRSAFENESFMPTGASPEPKLVINYL 114

Query: 121 QTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL 180
           Q LKSSEE L+EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP MQARRLL
Sbjct: 115 QALKSSEESLREQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPSMQARRLL 174

Query: 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240
           LDPAIHEEF RLKNLVEEKDKKVKEL++NIAAV+FT  SKMGK LMAKC+TLQEEN+EIG
Sbjct: 175 LDPAIHEEFTRLKNLVEEKDKKVKELQDNIAAVNFTPQSKMGKMLMAKCRTLQEENEEIG 234

Query: 241 RQNEEGETHQLSVKLALQKSLNAELKSQFEG 271
            Q  EG+ H+L++KLALQKS NAEL++QFEG
Sbjct: 235 NQAAEGKMHELAMKLALQKSQNAELRNQFEG 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456942|ref|XP_002281490.1| PREDICTED: FKBP12-interacting protein of 37 kDa [Vitis vinifera] gi|297733733|emb|CBI14980.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/271 (81%), Positives = 246/271 (90%)

Query: 1   MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVA 60
           MAS  H+DDDDDFGGDFS  HN RRSG+KR FGD+EDDEDDIF ++K + K+EETAPGVA
Sbjct: 3   MASLPHIDDDDDFGGDFSGGHNGRRSGNKRGFGDLEDDEDDIFSNKKGSFKLEETAPGVA 62

Query: 61  TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYL 120
           TGMILSLRESLQNCKDTLATCQ ELEAA+SEIQKWHSSFQN+ FIP GTS EP+LV+NYL
Sbjct: 63  TGMILSLRESLQNCKDTLATCQTELEAARSEIQKWHSSFQNDSFIPAGTSLEPKLVVNYL 122

Query: 121 QTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL 180
           QTLKSSEE L+EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP MQARRLL
Sbjct: 123 QTLKSSEESLREQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPSMQARRLL 182

Query: 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240
           LDPAIHEEF RLKNLVEEK+KKVKEL++N+AAV+FT  SKMGK LMAKC+TLQEEN+EIG
Sbjct: 183 LDPAIHEEFTRLKNLVEEKEKKVKELQDNVAAVNFTPQSKMGKMLMAKCRTLQEENEEIG 242

Query: 241 RQNEEGETHQLSVKLALQKSLNAELKSQFEG 271
               EG+ H+L++KLALQKS NAEL+SQFEG
Sbjct: 243 NIASEGKMHELTMKLALQKSQNAELRSQFEG 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562704|ref|XP_003549609.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like [Glycine max]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/273 (75%), Positives = 229/273 (83%), Gaps = 6/273 (2%)

Query: 1   MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDE--DDIFGSRKANSKVEETAPG 58
           MAS  H D+D DFGG FS  H    SG+KRS  D ++DE  +D FG +KA SK EE A G
Sbjct: 1   MASPPHFDEDFDFGGGFSGTH----SGNKRSSPDYDEDEYENDPFGHKKAKSKAEEAASG 56

Query: 59  VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVIN 118
           V TGMILSLRESLQNCKD L TCQ ELEAAKSEIQKWHSSFQNE FIP  T+P P+LVIN
Sbjct: 57  VTTGMILSLRESLQNCKDMLVTCQNELEAAKSEIQKWHSSFQNEPFIPAETTPAPKLVIN 116

Query: 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARR 178
           YLQ LKSSEE L+EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKP  MQARR
Sbjct: 117 YLQALKSSEESLREQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPASMQARR 176

Query: 179 LLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDE 238
           LLLDPA+HEEF RLKNLVEEKDKKVKEL++NIAAV+FT  SKMGK LMAKC+TLQEEN+E
Sbjct: 177 LLLDPAVHEEFTRLKNLVEEKDKKVKELQDNIAAVNFTPQSKMGKMLMAKCRTLQEENEE 236

Query: 239 IGRQNEEGETHQLSVKLALQKSLNAELKSQFEG 271
           IG Q  EG+ H+L++KL++QK  NAEL+SQFEG
Sbjct: 237 IGNQASEGKMHELAMKLSVQKYQNAELRSQFEG 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440648|ref|XP_004138096.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like [Cucumis sativus]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/271 (78%), Positives = 241/271 (88%)

Query: 1   MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVA 60
           MAS  HL+DDDDFGGDF+  HN+R+SG+KR FGD+EDDEDD FGS+KANSKVEETAPGVA
Sbjct: 1   MASHAHLEDDDDFGGDFNGTHNNRQSGNKRGFGDLEDDEDDFFGSKKANSKVEETAPGVA 60

Query: 61  TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYL 120
           T MILSLRESL+ C+DTLATC+ ELE AKSEIQKW SSFQNE FIP GTSPEP+ V+NYL
Sbjct: 61  TRMILSLRESLETCEDTLATCRTELETAKSEIQKWISSFQNENFIPSGTSPEPKYVVNYL 120

Query: 121 QTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL 180
           Q+LKSSEE L++QLEKAKKKEAAFIVT AKREQEIAELK+AVRDLKAQLKPP MQARRLL
Sbjct: 121 QSLKSSEESLRDQLEKAKKKEAAFIVTLAKREQEIAELKAAVRDLKAQLKPPSMQARRLL 180

Query: 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240
           LDPAIHEEF RLKNLVEEKDKKVKEL++NIAAVSFT +SKMGK LMAKC+TLQEEN+EIG
Sbjct: 181 LDPAIHEEFTRLKNLVEEKDKKVKELQDNIAAVSFTPSSKMGKMLMAKCRTLQEENEEIG 240

Query: 241 RQNEEGETHQLSVKLALQKSLNAELKSQFEG 271
            Q  EG+ H+L +KLA QK+ N EL+ Q+E 
Sbjct: 241 NQAAEGKMHELGMKLASQKAQNTELRIQYEA 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531199|ref|XP_004172575.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like, partial [Cucumis sativus]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/270 (79%), Positives = 241/270 (89%)

Query: 1   MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVA 60
           MAS  HL+DDDDFGGDF+  HN+R+SG+KR FGD+EDDEDD FGS+KANSKVEETAPGVA
Sbjct: 1   MASHAHLEDDDDFGGDFNGTHNNRQSGNKRGFGDLEDDEDDFFGSKKANSKVEETAPGVA 60

Query: 61  TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYL 120
           T MILSLRESL+ C+DTLATC+ ELE AKSEIQKW SSFQNE FIP GTSPEP+ V+NYL
Sbjct: 61  TRMILSLRESLETCEDTLATCRTELETAKSEIQKWISSFQNENFIPSGTSPEPKYVVNYL 120

Query: 121 QTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL 180
           Q+LKSSEE L++QLEKAKKKEAAFIVT AKREQEIAELK+AVRDLKAQLKPP MQARRLL
Sbjct: 121 QSLKSSEESLRDQLEKAKKKEAAFIVTLAKREQEIAELKAAVRDLKAQLKPPSMQARRLL 180

Query: 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240
           LDPAIHEEF RLKNLVEEKDKKVKEL++NIAAVSFT +SKMGK LMAKC+TLQEEN+EIG
Sbjct: 181 LDPAIHEEFTRLKNLVEEKDKKVKELQDNIAAVSFTPSSKMGKMLMAKCRTLQEENEEIG 240

Query: 241 RQNEEGETHQLSVKLALQKSLNAELKSQFE 270
            Q  EG+ H+L +KLA QK+ N EL+ Q+E
Sbjct: 241 NQAAEGKMHELGMKLASQKAQNTELRIQYE 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232439|ref|NP_190985.1| FKBP12 interacting protein 37 [Arabidopsis thaliana] gi|73919359|sp|Q9ZSZ8.1|FIP37_ARATH RecName: Full=FKBP12-interacting protein of 37 kDa; Short=FIP-37; AltName: Full=Immunophilin-interacting protein AtFIP37 gi|3859944|gb|AAC72922.1| FKBP12 interacting protein [Arabidopsis thaliana] gi|6822063|emb|CAB70991.1| FKBP12 interacting protein (FIP37) [Arabidopsis thaliana] gi|17380968|gb|AAL36296.1| putative FKBP12 interacting protein FIP37 [Arabidopsis thaliana] gi|21281199|gb|AAM44991.1| putative FKBP12 interacting protein FIP37 [Arabidopsis thaliana] gi|332645674|gb|AEE79195.1| FKBP12 interacting protein 37 [Arabidopsis thaliana]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/262 (72%), Positives = 222/262 (84%), Gaps = 7/262 (2%)

Query: 10  DDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRE 69
           DDDFGGD SA + +R SG++RSFGD+EDDEDDIFGS          APGV TGMILSLR 
Sbjct: 7   DDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGSTT-------VAPGVRTGMILSLRG 59

Query: 70  SLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEM 129
           SL+NCKD LA+CQ ELE+AK+EIQKW S+FQNE F+P G SPEPR +I+Y+Q LKSSE+ 
Sbjct: 60  SLKNCKDDLASCQNELESAKTEIQKWKSAFQNESFVPAGKSPEPRFLIDYIQNLKSSEKS 119

Query: 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEF 189
           LKEQLE AK+KEA+ IV +AKREQE+AELKSAVRDLK+QLKP  MQARRLLLDPAIHEEF
Sbjct: 120 LKEQLEIAKRKEASCIVQYAKREQEMAELKSAVRDLKSQLKPASMQARRLLLDPAIHEEF 179

Query: 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETH 249
            RLKNLVEEKDKK+KEL++NIAAV+FT  SK GK LMAKC+TLQEEN+EIG Q  EG+ H
Sbjct: 180 SRLKNLVEEKDKKIKELQDNIAAVTFTPQSKNGKMLMAKCRTLQEENEEIGHQAAEGKIH 239

Query: 250 QLSVKLALQKSLNAELKSQFEG 271
           +L++KLA+QKS NAEL+SQFEG
Sbjct: 240 ELAIKLAMQKSQNAELRSQFEG 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513687|ref|XP_003525542.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like [Glycine max]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/249 (75%), Positives = 212/249 (85%), Gaps = 2/249 (0%)

Query: 25  RSGSKRSFGDIEDDE--DDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQ 82
           +SG+KR   D ++DE  +D FG +KA SK EE A GV TGMILSLRESLQNCKD LATCQ
Sbjct: 21  QSGNKRPSPDYDEDEYENDPFGHKKAKSKAEEAASGVTTGMILSLRESLQNCKDMLATCQ 80

Query: 83  LELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEA 142
            ELEAAKSEIQKWHSSFQNE FI  GT+P P+ VINYLQ LKSSEE L+EQLEKAKKKEA
Sbjct: 81  NELEAAKSEIQKWHSSFQNEPFISAGTTPAPKSVINYLQALKSSEESLREQLEKAKKKEA 140

Query: 143 AFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK 202
           AFIVTFAKREQEIAELKSAVRDLK+Q  P  MQARRLLLDPA+HEEF RLKNLVEEKDKK
Sbjct: 141 AFIVTFAKREQEIAELKSAVRDLKSQFNPASMQARRLLLDPAVHEEFTRLKNLVEEKDKK 200

Query: 203 VKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262
           VKEL++NIAAV+FT  SKMGK LMAKC+TLQEEN+EIG Q  EG+ H+L++KL++QK  N
Sbjct: 201 VKELQDNIAAVNFTPQSKMGKMLMAKCRTLQEENEEIGNQASEGKMHELAMKLSVQKYQN 260

Query: 263 AELKSQFEG 271
           AEL+ QFEG
Sbjct: 261 AELRCQFEG 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461873|ref|XP_003601218.1| FKBP12-interacting protein of 37 kDa [Medicago truncatula] gi|355490266|gb|AES71469.1| FKBP12-interacting protein of 37 kDa [Medicago truncatula]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 192/278 (69%), Positives = 223/278 (80%), Gaps = 11/278 (3%)

Query: 1   MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDI--FGSRKANSKVEETAPG 58
           MAS T  DDD DFGG+    H    SG+KR   D +D++ D   F  +KA SKVEETA G
Sbjct: 1   MASPTRFDDDFDFGGEIGGRH----SGTKRPSPDYDDEDYDNDPFAPKKAKSKVEETASG 56

Query: 59  VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVIN 118
           V TGMILSLRESLQ+CKD LATCQ ELEAAKSEI  WHSS QNE  +  G +PEP++++N
Sbjct: 57  VTTGMILSLRESLQSCKDRLATCQSELEAAKSEIHSWHSSIQNEPVVCAGATPEPKMLMN 116

Query: 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARR 178
           YLQ LKSSEE L+EQLEKAKKKE+AFI TFAKREQEIAELKSAVRDLK QLKPP MQARR
Sbjct: 117 YLQALKSSEESLREQLEKAKKKESAFIKTFAKREQEIAELKSAVRDLKVQLKPPSMQARR 176

Query: 179 LLLDPAIHEEFRRLK-----NLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQ 233
           LLLDPA+HEEF RLK     NLVEEKDKK+K+L++NI A++FT+ SKMGK LMAKC+TLQ
Sbjct: 177 LLLDPAVHEEFTRLKLSSYQNLVEEKDKKIKDLQDNITAITFTSQSKMGKMLMAKCRTLQ 236

Query: 234 EENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG 271
           EEN+EIG Q  EG+ H+L++KLALQKS N +L+SQFEG
Sbjct: 237 EENEEIGNQASEGKIHELTMKLALQKSQNTQLRSQFEG 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497674|gb|AFK36903.1| unknown [Lotus japonicus]

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 200/273 (73%), Positives = 224/273 (82%), Gaps = 6/273 (2%)

Query: 1   MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDI--FGSRKANSKVEETAPG 58
           MAS  H DDD DFGG+       R SGSKR   D +DD+ D   F  +KA SK EET  G
Sbjct: 1   MASPAHFDDDFDFGGEIGG----RLSGSKRPSPDYDDDDYDNDPFAPKKAKSKAEETTSG 56

Query: 59  VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVIN 118
           V TGMILSLRESLQ+CKDTLATCQ ELE+AKSEIQ WHSS QNE  +P GT+PEP+++I 
Sbjct: 57  VTTGMILSLRESLQSCKDTLATCQNELESAKSEIQGWHSSIQNESVVPTGTTPEPKMLIK 116

Query: 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARR 178
           YLQ LKSSE   KE+LEKAKKKE+AFIVTFAKREQEIAELKSAVRDLKAQLKPP MQARR
Sbjct: 117 YLQELKSSEVSFKEELEKAKKKESAFIVTFAKREQEIAELKSAVRDLKAQLKPPSMQARR 176

Query: 179 LLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDE 238
           LLLDPA+HEEFRRLKNLVEEKDKKVKEL++NIAAVSFT  SKMGK LMAKC+TLQEEN+E
Sbjct: 177 LLLDPAVHEEFRRLKNLVEEKDKKVKELQDNIAAVSFTPQSKMGKMLMAKCRTLQEENEE 236

Query: 239 IGRQNEEGETHQLSVKLALQKSLNAELKSQFEG 271
           IG Q  EG+ H+L++KLALQKS  A+ +SQFEG
Sbjct: 237 IGNQASEGKIHELTMKLALQKSQCAQFRSQFEG 269

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2080275	330	FIP37 "FKBP12 interacting prot	0.797	0.654	0.629	1.1e-64
FB|FBgn0000662	536	fl(2)d "female lethal d" [Dros	0.690	0.348	0.284	1.8e-15
UNIPROTKB|Q28XY0	560	fl(2)d "Pre-mRNA-splicing regu	0.579	0.280	0.316	1.9e-15
UNIPROTKB|E1BV94	390	WTAP "Uncharacterized protein"	0.453	0.315	0.365	2.2e-15
UNIPROTKB|F1SB61	395	WTAP "Uncharacterized protein"	0.453	0.311	0.365	2.3e-15
RGD|1563824	395	Wtap "Wilms tumor 1 associated	0.453	0.311	0.365	2.3e-15
UNIPROTKB|Q15007	396	WTAP "Pre-mRNA-splicing regula	0.453	0.310	0.365	2.3e-15
MGI|MGI:1926395	396	Wtap "Wilms' tumour 1-associat	0.453	0.310	0.365	2.3e-15
ZFIN|ZDB-GENE-030131-5990	423	wtap "Wilms tumor 1 associated	0.619	0.397	0.309	3.6e-15

TAIR|locus:2080275 FIP37 "FKBP12 interacting protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 136/216 (62%), Positives = 157/216 (72%)

Query:    56 APGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRL 115
             APGV TGMILSLR SL+NCKD LA+CQ ELE+AK+EIQKW S+FQNE F+P G SPEPR 
Sbjct:    46 APGVRTGMILSLRGSLKNCKDDLASCQNELESAKTEIQKWKSAFQNESFVPAGKSPEPRF 105

Query:   116 VINYLQTLKSSXXXXXXXXXXXXXXXXXFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQ 175
             +I+Y+Q LKSS                  IV +AKREQE+AELKSAVRDLK+QLKP  MQ
Sbjct:   106 LIDYIQNLKSSEKSLKEQLEIAKRKEASCIVQYAKREQEMAELKSAVRDLKSQLKPASMQ 165

Query:   176 ARRLLLDPAIHEEFRRXXXXXXXXXXXXXXXXXXIAAVSFTANSKMGKALMAKCKTLQEE 235
             ARRLLLDPAIHEEF R                  IAAV+FT  SK GK LMAKC+TLQEE
Sbjct:   166 ARRLLLDPAIHEEFSRLKNLVEEKDKKIKELQDNIAAVTFTPQSKNGKMLMAKCRTLQEE 225

Query:   236 NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG 271
             N+EIG Q  EG+ H+L++KLA+QKS NAEL+SQFEG
Sbjct:   226 NEEIGHQAAEGKIHELAIKLAMQKSQNAELRSQFEG 261

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

FB|FBgn0000662 fl(2)d "female lethal d" [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 54/190 (28%), Positives = 85/190 (44%)

Query:    82 QLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSXXXXXXXXXXXXXXX 141
             Q  L+  + + Q+ H++   E           RL+ + ++ LK                 
Sbjct:    79 QQHLQQQQQQQQQQHAAAVAEAVA--AAEQRQRLLEDEIENLKLEQVRMAQQCADAQRRE 136

Query:   142 XXFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRXXXXXXXXXX 201
                +   A +EQE  +  S + + KAQ  P  +  R  LLDPA++  F R          
Sbjct:   137 KILMRRLANKEQEFQDYVSQIAEYKAQQAPTALALRTALLDPAVNLLFERLKKELKATKA 196

Query:   202 XXXXXXXXIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSL 261
                     ++A  FT +S  GK LMAKC+ L +EN+E+G+    G   +L  +LA+QKS 
Sbjct:   197 KLEETQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGKMTSNGRLAKLETELAMQKSF 256

Query:   262 NAELK-SQFE 270
             + E+K SQ E
Sbjct:   257 SEEVKKSQSE 266

GO:0019099 "female germ-line sex determination" evidence=NAS

GO:0000375 "RNA splicing, via transesterification reactions" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS;TAS

GO:0007539 "primary sex determination, soma" evidence=NAS

GO:0007530 "sex determination" evidence=IPI

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=ISS;IPI

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|Q28XY0 fl(2)d "Pre-mRNA-splicing regulator female-lethal(2)D" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 203 (76.5 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 50/158 (31%), Positives = 75/158 (47%)

Query:   114 RLVINYLQTLKSSXXXXXXXXXXXXXXXXXFIVTFAKREQEIAELKSAVRDLKAQLKPPL 173
             RL+ + ++TLK                    +   A +EQE  +  S + + KAQ  P  
Sbjct:   116 RLLEDEIETLKLEQVRMGQICADAQRREKILMRRLANKEQEFQDYVSQIAEYKAQQAPTA 175

Query:   174 MQARRLLLDPAIHEEFRRXXXXXXXXXXXXXXXXXXIAAVSFTANSKMGKALMAKCKTLQ 233
             +  R  LLDPA++  F R                  ++A  FT +S  GK LMAKC+ L 
Sbjct:   176 LALRTALLDPAVNLLFERLKKELKATKTKLEETQNELSAWKFTPDSNTGKRLMAKCRLLY 235

Query:   234 EENDEIGRQNEEGETHQLSVKLALQKSLNAELK-SQFE 270
             +EN+E+G+    G   +L  +LA+QKS + E+K SQ E
Sbjct:   236 QENEELGKMTSNGRLAKLETELAMQKSFSEEVKKSQSE 273

GO:0000375 "RNA splicing, via transesterification reactions" evidence=ISS

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|E1BV94 WTAP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 199 (75.1 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 45/123 (36%), Positives = 68/123 (55%)

Query:   145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRXXXXXXXXXXXXX 204
             ++  A +EQE+ E  + ++ LK   +P + Q R  ++DPAI+  F +             
Sbjct:    79 VMRLATKEQEMQECTNQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLE 138

Query:   205 XXXXXIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264
                  ++A  FT +S+ GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + E
Sbjct:   139 QAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEE 198

Query:   265 LKS 267
             LKS
Sbjct:   199 LKS 201

GO:0005654 "nucleoplasm" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|F1SB61 WTAP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 45/123 (36%), Positives = 68/123 (55%)

Query:   145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRXXXXXXXXXXXXX 204
             ++  A +EQE+ E  + ++ LK   +P + Q R  ++DPAI+  F +             
Sbjct:    77 VMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLE 136

Query:   205 XXXXXIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264
                  ++A  FT +S+ GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + E
Sbjct:   137 QAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEE 196

Query:   265 LKS 267
             LKS
Sbjct:   197 LKS 199

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

RGD|1563824 Wtap "Wilms tumor 1 associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 45/123 (36%), Positives = 68/123 (55%)

Query:   145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRXXXXXXXXXXXXX 204
             ++  A +EQE+ E  + ++ LK   +P + Q R  ++DPAI+  F +             
Sbjct:    77 VMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLE 136

Query:   205 XXXXXIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264
                  ++A  FT +S+ GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + E
Sbjct:   137 QAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEE 196

Query:   265 LKS 267
             LKS
Sbjct:   197 LKS 199

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=IEA;ISO

GO:0031965 "nuclear membrane" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q15007 WTAP "Pre-mRNA-splicing regulator WTAP" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 45/123 (36%), Positives = 68/123 (55%)

Query:   145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRXXXXXXXXXXXXX 204
             ++  A +EQE+ E  + ++ LK   +P + Q R  ++DPAI+  F +             
Sbjct:    77 VMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLE 136

Query:   205 XXXXXIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264
                  ++A  FT +S+ GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + E
Sbjct:   137 QAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEE 196

Query:   265 LKS 267
             LKS
Sbjct:   197 LKS 199

GO:0006397 "mRNA processing" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1926395 Wtap "Wilms' tumour 1-associating protein" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 45/123 (36%), Positives = 68/123 (55%)

Query:   145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRXXXXXXXXXXXXX 204
             ++  A +EQE+ E  + ++ LK   +P + Q R  ++DPAI+  F +             
Sbjct:    77 VMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLE 136

Query:   205 XXXXXIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264
                  ++A  FT +S+ GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + E
Sbjct:   137 QAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEE 196

Query:   265 LKS 267
             LKS
Sbjct:   197 LKS 199

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0031965 "nuclear membrane" evidence=ISO

ZFIN|ZDB-GENE-030131-5990 wtap "Wilms tumor 1 associated protein" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 52/168 (30%), Positives = 79/168 (47%)

Query:   100 QNELFIPPGTSPEPRLVINYLQTLKSSXXXXXXXXXXXXXXXXXFIVTFAKREQEIAELK 159
             Q+E ++    +    L  N +  LK S                  ++  A +EQE+ E  
Sbjct:    32 QHETYVQMLEAKYADLNSNDVTGLKESEEKLKQQQQESARRENILVMRLATKEQEMQECT 91

Query:   160 SAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRXXXXXXXXXXXXXXXXXXIAAVSFTANS 219
             + ++ LK   +P   Q R  ++DPAI+  F +                  ++A  FT +S
Sbjct:    92 TQIQYLKQVQQPSAAQLRSSMVDPAINLFFLKMKAELEQTKDKLEQAQNELSAWKFTPDS 151

Query:   220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267
             + GK LMAKC+ L +EN E+GRQ  +G   QL  +LALQK  + ELKS
Sbjct:   152 QTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKS 199


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.126   0.340    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      271       211   0.00081  112 3  10 23  0.40    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  214 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.31u 0.24s 24.55t   Elapsed:  00:00:02
  Total cpu time:  24.31u 0.24s 24.55t   Elapsed:  00:00:02
  Start:  Tue May 21 02:20:55 2013   End:  Tue May 21 02:20:57 2013

GO:0006397 "mRNA processing" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZSZ8	FIP37_ARATH	No assigned EC number	0.7251	0.9409	0.7727	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Al_scaffold_0005_2321	annotation not avaliable (336 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_603441.1	annotation not avaliable (689 aa)					•		•		0.612
	fgenesh2_kg.8__2457__AT5G64350.1	annotation not avaliable (112 aa)					•		•		0.500

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
KOG2991	330	consensus Splicing regulator [RNA processing and m	100.0
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	96.69
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.34
PRK02224	880	chromosome segregation protein; Provisional	96.04
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.99
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	95.84
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.23
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.21
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	94.88
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	94.81
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.72
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.54
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.39
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.25
PF00038	312	Filament: Intermediate filament protein; InterPro:	93.85
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	93.75
KOG0963	629	consensus Transcription factor/CCAAT displacement	93.75
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	93.62
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	93.62
KOG4677	554	consensus Golgi integral membrane protein [Intrace	93.33
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.25
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.04
cd09237	356	V_ScBro1_like Protein-interacting V-domain of Sacc	92.85
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.6
PRK03918	880	chromosome segregation protein; Provisional	92.56
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	92.56
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	92.19
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	92.15
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	92.12
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	92.05
PHA02562	562	46 endonuclease subunit; Provisional	91.87
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	91.61
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	90.98
KOG0933	1174	consensus Structural maintenance of chromosome pro	90.77
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	90.7
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	90.62
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	90.53
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	90.38
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	89.81
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.23
PF13514	1111	AAA_27: AAA domain	89.06
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	88.71
COG4942	420	Membrane-bound metallopeptidase [Cell division and	88.36
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	88.33
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	88.19
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.13
KOG0933	1174	consensus Structural maintenance of chromosome pro	88.03
PHA02562	562	46 endonuclease subunit; Provisional	87.93
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	87.46
PRK09039	343	hypothetical protein; Validated	87.11
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	86.79
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	86.42
PRK10698	222	phage shock protein PspA; Provisional	86.39
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	86.34
PRK11519	719	tyrosine kinase; Provisional	86.3
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	86.01
KOG0996	1293	consensus Structural maintenance of chromosome pro	85.85
PRK09039	343	hypothetical protein; Validated	85.49
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	85.44
PRK03918	880	chromosome segregation protein; Provisional	84.81
cd09238	339	V_Alix_like_1 Protein-interacting V-domain of an u	84.72
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	84.61
PF14662	193	CCDC155: Coiled-coil region of CCDC155	84.61
PRK10869	553	recombination and repair protein; Provisional	84.59
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	84.53
TIGR02231	525	conserved hypothetical protein. This family consis	84.53
PRK04778	569	septation ring formation regulator EzrA; Provision	84.11
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	84.04
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	83.26
KOG0996	1293	consensus Structural maintenance of chromosome pro	83.09
cd09236	353	V_AnPalA_UmRIM20_like Protein-interacting V-domain	81.97
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	81.46
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	81.19
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	80.46

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=100.00  E-value=3.4e-85  Score=599.68  Aligned_cols=256  Identities=45%  Similarity=0.620  Sum_probs=251.6

Q ss_pred             CCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccccchhhhcCCCchhHHHHhhHHHHHhchhhhhhhHHHHHHH
Q 024197            9 DDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAA   88 (271)
Q Consensus         9 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a   88 (271)
                      -|+|||||-+..++.+.||+.|+|+|+.||+||+|++--       .||||-|||||++|-++-+||+.+++||..+..|
T Consensus         6 ~~~D~~~~~~~a~~t~~~~n~~s~~dl~d~e~d~~~s~~-------~A~~~~tGm~~~~~~~~p~pk~~~~seq~~~~~a   78 (330)
T KOG2991|consen    6 QDDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGSTT-------VAPGVRTGMILSMTNEEPLPKKVRLSEQDFKVMA   78 (330)
T ss_pred             cccccCCccchhhcccCCcchhhccCccccccccccCCC-------CCCCCccchhhhhccCCCCchhhhhHHHHHHHHH
Confidence            388999999999999999999999999999999999865       4699999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197           89 KSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ  168 (271)
Q Consensus        89 ~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~  168 (271)
                      +.+|++|++.||||+|||++++++|+++++||+.||+||++|++|+++++|||++||||||+||||+|||+++|++||++
T Consensus        79 ~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~q  158 (330)
T KOG2991|consen   79 RDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQ  158 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccc
Q 024197          169 LKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGET  248 (271)
Q Consensus       169 ~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegri  248 (271)
                      ++|++++||++|+|||||++|.|||.+|+++++|++++|++|+||+|||||++||+||||||+|++||+|||+++++|||
T Consensus       159 q~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gri  238 (330)
T KOG2991|consen  159 QQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRI  238 (330)
T ss_pred             hCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhcC
Q 024197          249 HQLSVKLALQKSLNAELKSQFEG  271 (271)
Q Consensus       249 a~LE~eLAlqK~~~eELrk~~ee  271 (271)
                      |+|+++||.||++++|||++++|
T Consensus       239 a~Le~eLAmQKs~seElkssq~e  261 (330)
T KOG2991|consen  239 AELEIELAMQKSQSEELKSSQEE  261 (330)
T ss_pred             HHHHHHHHHHHhhHHHHHHhHHH
Confidence            99999999999999999999875

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.097  Score=54.33  Aligned_cols=181  Identities=17%  Similarity=0.182  Sum_probs=115.2

Q ss_pred             HhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHH
Q 024197           65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF  144 (271)
Q Consensus        65 l~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vl  144 (271)
                      |+|=+-=...+-.++.++++++.++.||++-+.+|-.-....--.+.+..-          -|++   =|+++.-||.-|
T Consensus        39 L~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e----------~Ees---LLqESaakE~~y  105 (772)
T KOG0999|consen   39 LELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEE----------REES---LLQESAAKEEYY  105 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh----------hHHH---HHHHHHHhHHHH
Confidence            444444455667788999999999999999998885532222222222211          1332   267999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHH--HHHHHHHHHHHHHHHHHHhhhhcccCCCchhH
Q 024197          145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFR--RLKNLVEEKDKKVKELEENIAAVSFTANSKMG  222 (271)
Q Consensus       145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~--rLr~eLee~~~kle~aq~ELsAwkFTpdS~~G  222 (271)
                      +.+|..+|-|+-.++..+...+.-. -...+--+-+.+.--+++..  |||.+|.+++-+-..+-.+++..  --....=
T Consensus       106 l~kI~eleneLKq~r~el~~~q~E~-erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSEL--EEENIsL  182 (772)
T KOG0999|consen  106 LQKILELENELKQLRQELTNVQEEN-ERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSEL--EEENISL  182 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchH
Confidence            9999999999988888777665442 22233334455544445544  56777877765554444444433  1122222


Q ss_pred             HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHH
Q 024197          223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELK  266 (271)
Q Consensus       223 KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELr  266 (271)
                      ++.++-.|.=|-|-|-|.     ..|.+||-++.+.+++++|.-
T Consensus       183 QKqVs~LR~sQVEyEglk-----heikRleEe~elln~q~ee~~  221 (772)
T KOG0999|consen  183 QKQVSNLRQSQVEYEGLK-----HEIKRLEEETELLNSQLEEAI  221 (772)
T ss_pred             HHHHHHHhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666665     446788889998888888754

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.34  E-value=0.13  Score=53.62  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHh
Q 024197           64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSS   98 (271)
Q Consensus        64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~   98 (271)
                      |.++...++.+...+..++.++..+..++......
T Consensus       676 l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~  710 (1164)
T TIGR02169       676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQE  710 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666555555555433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=96.04  E-value=1.3  Score=46.01  Aligned_cols=49  Identities=22%  Similarity=0.330  Sum_probs=27.6

Q ss_pred             HHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024197          119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKA  167 (271)
Q Consensus       119 ~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~  167 (271)
                      .+..+...-..+.+++.+...+-.-+...+...+..+.++...+..+..
T Consensus       252 ~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~  300 (880)
T PRK02224        252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA  300 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555556566555555666666666666666655555533

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.99  E-value=1.1  Score=40.82  Aligned_cols=43  Identities=19%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             hhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 024197           60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNE  102 (271)
Q Consensus        60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e  102 (271)
                      -..-|=.||..|..+....+.++.++..++.++..|+.-+..+
T Consensus        52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e   94 (312)
T PF00038_consen   52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE   94 (312)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            3456778999999999999999999999999999998777766

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=95.84  E-value=0.53  Score=41.35  Aligned_cols=174  Identities=23%  Similarity=0.369  Sum_probs=109.1

Q ss_pred             HHHhhHHHHHhchhhhhh-------hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197           63 MILSLRESLQNCKDTLAT-------CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE  135 (271)
Q Consensus        63 ~il~lr~~l~~~~~~~~~-------~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~  135 (271)
                      +|-.+.+.|...+..+++       ++.++..+..++.+|....+--  +.+|...--+........+...=+.+++++.
T Consensus        31 ~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A--l~~g~edLAr~al~~k~~~e~~~~~l~~~~~  108 (221)
T PF04012_consen   31 AIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA--LAAGREDLAREALQRKADLEEQAERLEQQLD  108 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666655       5667888899999999655433  4455333333344444455555567788999


Q ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHH--Hhh----hChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024197          136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR--RLL----LDPAIHEEFRRLKNLVEEKDKKVKELEEN  209 (271)
Q Consensus       136 e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR--~~L----lDPAVNlef~rLr~eLee~~~kle~aq~E  209 (271)
                      .......-|-..|...+..|.++++....|+.......++..  .++    ++ ...--|.||+..+...+.+.+-. .+
T Consensus       109 ~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~-~a~~~~er~e~ki~~~ea~a~a~-~e  186 (221)
T PF04012_consen  109 QAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVS-SAMDSFERMEEKIEEMEARAEAS-AE  186 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-chHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            999999999999999999999999988888776543322221  111    22 23345677777777776665433 33


Q ss_pred             hhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHH
Q 024197          210 IAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKS  260 (271)
Q Consensus       210 LsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~  260 (271)
                      |..   ++.+            +..+.+++|..-..    . +.+|+.+|.
T Consensus       187 l~~---~~~~------------~e~~l~~~~~~~~~----~-~~~La~LK~  217 (221)
T PF04012_consen  187 LAD---SDQD------------LEAELEELERDSSV----S-EDELAALKA  217 (221)
T ss_pred             hcc---Cccc------------HHHHHHHhcCCCcc----h-HHHHHHHHh
Confidence            333   3332            67777777754322    2 666666654

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.23  E-value=0.027  Score=49.24  Aligned_cols=120  Identities=21%  Similarity=0.327  Sum_probs=44.4

Q ss_pred             CCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHH
Q 024197          110 SPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEF  189 (271)
Q Consensus       110 ~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef  189 (271)
                      ++.+......+..+...=.++++.|.++.|.=.-+.-+|.....+++++...+.........    ++.-.  -.....+
T Consensus        59 ~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~----l~~~~--~~L~~~~  132 (194)
T PF08614_consen   59 SESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAE----LEAEL--AQLEEKI  132 (194)
T ss_dssp             -------------------------------------------------------HHHHHHH----HHHHH--HHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHH----HHHHH--HHHHHHH
Confidence            33333344455555555556666676666666556666665555555555544443222110    00000  0123456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197          190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG  240 (271)
Q Consensus       190 ~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG  240 (271)
                      ..|..+|.+..+-++.+++|+.+.+..-.     .|=.|++.|+.||.+|=
T Consensus       133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~-----~~e~k~~~l~~En~~Lv  178 (194)
T PF08614_consen  133 KDLEEELKEKNKANEILQDELQALQLQLN-----MLEEKLRKLEEENRELV  178 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence            78889999999999999999999876443     37889999999999984

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.21  E-value=0.52  Score=51.63  Aligned_cols=147  Identities=23%  Similarity=0.359  Sum_probs=85.9

Q ss_pred             hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcc-cCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHh-HHHH
Q 024197           66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNE-LFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKK-KEAA  143 (271)
Q Consensus        66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e-~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~kr-RE~v  143 (271)
                      .||+.++.+...|.+++...+++...+.+-+..++.- .-+ .-....-.-..+.++.|+.-...++.++.+.+. |=..
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  682 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREI-TQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ  682 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888877777777766665555554433222220 000 000012223345777788877888877755444 3356


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhh------hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197          144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL------LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV  213 (271)
Q Consensus       144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~L------lDPAVNlef~rLr~eLee~~~kle~aq~ELsAw  213 (271)
                      +...++..+.++..+..++..+...+......++.-+      +.-.....+..++.++.+.+.+.+.-..+|..|
T Consensus       683 ~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~  758 (1201)
T PF12128_consen  683 IEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQ  758 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888888888776654443333222      445555556666666666555555555555444

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=94.88  E-value=3.5  Score=38.82  Aligned_cols=165  Identities=15%  Similarity=0.142  Sum_probs=101.6

Q ss_pred             HHHHHHHHhhhcccCCC------CCCCCChhhhHHHHHhhHh-hHHHHHHHHHH--HHhHHHHHHHHHhhHHHHHHHHHH
Q 024197           90 SEIQKWHSSFQNELFIP------PGTSPEPRLVINYLQTLKS-SEEMLKEQLEK--AKKKEAAFIVTFAKREQEIAELKS  160 (271)
Q Consensus        90 ~ei~kW~~~fq~e~~i~------a~~~~~~~l~~~~l~~Lk~-sE~~LkeQl~e--~krRE~vlv~rLAtKEQEiqEl~s  160 (271)
                      .-+..|++.+.=+..-.      .-.+.+|.....-+..+-. +|.-+.+ +..  .+..-..+-.++...++++.+...
T Consensus       113 ~~~~~~~~~v~v~~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~-~~~~~~~~a~~fl~~ql~~~~~~l~~ae~  191 (362)
T TIGR01010       113 AFYRYYKKRLSVDVDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINR-LNERARKDTIAFAENEVKEAEQRLNATKA  191 (362)
T ss_pred             HHHHHHHhceEEeecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677885543321110      2356788777666666644 4443333 222  222334677888888888888888


Q ss_pred             HHHHHHHhcCCchHHHHHhhhChhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHH
Q 024197          161 AVRDLKAQLKPPLMQARRLLLDPAI-----HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEE  235 (271)
Q Consensus       161 qi~dlK~~~~ps~~qlR~~LlDPAV-----Nlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeE  235 (271)
                      .+.++|..+.         ++||..     .-.+..|+.++.+.+.++..+..     .|+|+++.=+.|-++...|+..
T Consensus       192 ~l~~fr~~~~---------~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~-----~~~~~~P~v~~l~~~i~~l~~~  257 (362)
T TIGR01010       192 ELLKYQIKNK---------VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS-----ITPEQNPQVPSLQARIKSLRKQ  257 (362)
T ss_pred             HHHHHHHhCC---------CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCCCCCchHHHHHHHHHHHHH
Confidence            8999988765         456643     34567777777777777665543     5788888888888888888877


Q ss_pred             HHHHhhhhhcc----------cchhhhHHHHHHHHHHHHHHhhh
Q 024197          236 NDEIGRQNEEG----------ETHQLSVKLALQKSLNAELKSQF  269 (271)
Q Consensus       236 NEELGr~lseg----------ria~LE~eLAlqK~~~eELrk~~  269 (271)
                      ..+.-+.+..+          ....|+.+....+..-+-+-..+
T Consensus       258 i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~  301 (362)
T TIGR01010       258 IDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSL  301 (362)
T ss_pred             HHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76544433222          23456666666555555444443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=94.81  E-value=4.3  Score=42.28  Aligned_cols=33  Identities=9%  Similarity=0.275  Sum_probs=16.6

Q ss_pred             HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHH
Q 024197           64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWH   96 (271)
Q Consensus        64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~   96 (271)
                      |..|...+......+..++.++..+..++....
T Consensus       672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~  704 (1179)
T TIGR02168       672 ILERRREIEELEEKIEELEEKIAELEKALAELR  704 (1179)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.72  E-value=2.6  Score=49.07  Aligned_cols=182  Identities=20%  Similarity=0.316  Sum_probs=96.2

Q ss_pred             HhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHH
Q 024197           65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF  144 (271)
Q Consensus        65 l~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vl  144 (271)
                      ..||+.++.--+.++.+.-.+-.|.+++.+|+.-|+.+             +...+..+.+.-.++.+.++++..+.-.+
T Consensus      1332 ~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~-------------~~~~~eelee~kk~l~~~lq~~qe~~e~~ 1398 (1930)
T KOG0161|consen 1332 DLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEE-------------VLQRLEELEELKKKLQQRLQELEEQIEAA 1398 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            45788888888888899999999999999999777665             22223334444445555566666666555


Q ss_pred             HHHHhhH-------HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---
Q 024197          145 IVTFAKR-------EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS---  214 (271)
Q Consensus       145 v~rLAtK-------EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk---  214 (271)
                      ..+.+++       .||+-++...+...++....-.-+.+  =.|-.++    ..|...+....+++.++.++....   
T Consensus      1399 ~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k--~f~k~l~----e~k~~~e~l~~Eld~aq~e~r~~~tel 1472 (1930)
T KOG0161|consen 1399 NAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQK--RFEKLLA----EWKKKLEKLQAELDAAQRELRQLSTEL 1472 (1930)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5555555       44444444444333322111000000  0111111    112222222222222222221110   


Q ss_pred             ----cCCC---------chhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197          215 ----FTAN---------SKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE  270 (271)
Q Consensus       215 ----FTpd---------S~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e  270 (271)
                          -.-+         -...+.|-+.|..|..-+.|+|+     ++|.|+..+...-....||+.+++
T Consensus      1473 ~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k-----~v~elek~~r~le~e~~elQ~aLe 1536 (1930)
T KOG0161|consen 1473 QKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGK-----RVHELEKEKRRLEQEKEELQAALE 1536 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0000         12345666666666666666664     458888888887777778777664

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.54  E-value=1.1  Score=46.98  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=15.6

Q ss_pred             HHHHHhchhhhhhhHHHHHHHHHHHHHHH
Q 024197           68 RESLQNCKDTLATCQLELEAAKSEIQKWH   96 (271)
Q Consensus        68 r~~l~~~~~~~~~~~~~l~~a~~ei~kW~   96 (271)
                      +..+.+....+..++.++.....++....
T Consensus       673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~  701 (1164)
T TIGR02169       673 PAELQRLRERLEGLKRELSSLQSELRRIE  701 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555554444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.39  E-value=5.4  Score=38.86  Aligned_cols=92  Identities=15%  Similarity=0.222  Sum_probs=54.2

Q ss_pred             HHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHh
Q 024197           70 SLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFA  149 (271)
Q Consensus        70 ~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLA  149 (271)
                      +.+--...+...+.+|+.|..++..++.  +|.-+.|.+    ...+.+.+..+...-..++.++...+.+=..+...++
T Consensus       162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~--~~~~~~~~~----~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~  235 (498)
T TIGR03007       162 AQRFIDEQIKTYEKKLEAAENRLKAFKQ--ENGGILPDQ----EGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG  235 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcccCccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344455778889999999999988873  232223222    2345566666666666666666666665555554433


Q ss_pred             ---------------hHHHHHHHHHHHHHHHHH
Q 024197          150 ---------------KREQEIAELKSAVRDLKA  167 (271)
Q Consensus       150 ---------------tKEQEiqEl~sqi~dlK~  167 (271)
                                     ....++.++..++..++.
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~  268 (498)
T TIGR03007       236 GEEPVLLAGSSVANSELDGRIEALEKQLDALRL  268 (498)
T ss_pred             cCCCCcCcccccCCCchHHHHHHHHHHHHHHHH
Confidence                           334445555555555543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.25  E-value=1.7  Score=47.42  Aligned_cols=34  Identities=24%  Similarity=0.496  Sum_probs=21.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 024197          183 PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFT  216 (271)
Q Consensus       183 PAVNlef~rLr~eLee~~~kle~aq~ELsAwkFT  216 (271)
                      +.+...+..+..++...+.++..+..++..|...
T Consensus       789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  822 (1163)
T COG1196         789 QALQEELEELEEELEEAERRLDALERELESLEQR  822 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666666666666443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=93.85  E-value=2  Score=39.17  Aligned_cols=76  Identities=26%  Similarity=0.344  Sum_probs=42.5

Q ss_pred             HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCch-----------HHHHHhhhC-----hhHHHHHHHHHH
Q 024197          131 KEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL-----------MQARRLLLD-----PAIHEEFRRLKN  194 (271)
Q Consensus       131 keQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~-----------~qlR~~LlD-----PAVNlef~rLr~  194 (271)
                      |++++...-|=..|+-+.-.+|++...+..+|..|+....+.+           ..+|..+-+     .-+-+.+..|+.
T Consensus         3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~   82 (312)
T PF00038_consen    3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE   82 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence            4567777777788888888888888888888888877743332           233333222     223344555555


Q ss_pred             HHHHHHHHHHHH
Q 024197          195 LVEEKDKKVKEL  206 (271)
Q Consensus       195 eLee~~~kle~a  206 (271)
                      ++..++.+++..
T Consensus        83 e~~~~r~k~e~e   94 (312)
T PF00038_consen   83 ELEDLRRKYEEE   94 (312)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=93.75  E-value=6.6  Score=37.53  Aligned_cols=120  Identities=16%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             CCCCChhhhHHHHHhhHh--hHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC---ch------HH-
Q 024197          108 GTSPEPRLVINYLQTLKS--SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKP---PL------MQ-  175 (271)
Q Consensus       108 ~~~~~~~l~~~~l~~Lk~--sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~p---s~------~q-  175 (271)
                      -++++|.....-+..+-+  .+..+........+--..+-.+|...++++.+....+..+|..+.-   +.      .+ 
T Consensus       138 ~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l  217 (444)
T TIGR03017       138 FSGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARL  217 (444)
T ss_pred             EeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHH
Confidence            456788776665554443  2223333344455556677788888888888888888888776632   10      00 


Q ss_pred             -----------------------------HHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHH
Q 024197          176 -----------------------------ARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALM  226 (271)
Q Consensus       176 -----------------------------lR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLm  226 (271)
                                                   +-.+..+|    .|..|+.++.+.+.++..+.     -+|+|+++.=+.|=
T Consensus       218 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~l~~~l~~le~~l~~l~-----~~y~~~hP~v~~l~  288 (444)
T TIGR03017       218 NELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANP----IIQNLKTDIARAESKLAELS-----QRLGPNHPQYKRAQ  288 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcCh----HHHHHHHHHHHHHHHHHHHH-----HHhCCCCcHHHHHH
Confidence                                         00111222    23455555555555554442     35899998877777


Q ss_pred             HHHHhHHHHH
Q 024197          227 AKCKTLQEEN  236 (271)
Q Consensus       227 aKCR~LqeEN  236 (271)
                      +++..|....
T Consensus       289 ~~i~~l~~~l  298 (444)
T TIGR03017       289 AEINSLKSQL  298 (444)
T ss_pred             HHHHHHHHHH
Confidence            7777777763

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=93.75  E-value=7.4  Score=40.93  Aligned_cols=193  Identities=27%  Similarity=0.412  Sum_probs=109.6

Q ss_pred             hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHh-------hHhhHHHHHHHHHHH-
Q 024197           66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQT-------LKSSEEMLKEQLEKA-  137 (271)
Q Consensus        66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~-------Lk~sE~~LkeQl~e~-  137 (271)
                      ++-+.++..+.++-++|..++....++--.++..+.|  + ++......++..+|..       |..-=+.|++|+... 
T Consensus       193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee--~-~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N  269 (629)
T KOG0963|consen  193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEE--V-AAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN  269 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444555555555666666665555555544433333  2 3344455566655543       222334567777443 


Q ss_pred             --HhHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh--ChhHHHHHHHHHHHHHHHHHHH-----
Q 024197          138 --KKKE-----AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL--DPAIHEEFRRLKNLVEEKDKKV-----  203 (271)
Q Consensus       138 --krRE-----~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~Ll--DPAVNlef~rLr~eLee~~~kl-----  203 (271)
                        ++-.     +..-+.|-.|+.+|+.|.+.|+.++.++.-    +|....  =.+|+-.....+.+|++.+.++     
T Consensus       270 ~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~----e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sD  345 (629)
T KOG0963|consen  270 SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVE----EREKHKAQISALEKELKAKISELEELKEKLNSRSD  345 (629)
T ss_pred             hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence              2333     356677778999999999999888776532    221111  1233344444445555544443     


Q ss_pred             -HHHHHhh---hhcccC------CC----chhHHHHHHHHHhHHHHHHHHhhhhh--cccchh-------hhHHHHHHHH
Q 024197          204 -KELEENI---AAVSFT------AN----SKMGKALMAKCKTLQEENDEIGRQNE--EGETHQ-------LSVKLALQKS  260 (271)
Q Consensus       204 -e~aq~EL---sAwkFT------pd----S~~GKrLmaKCR~LqeENEELGr~ls--egria~-------LE~eLAlqK~  260 (271)
                       +..+.+|   .++.|.      ++    .+.-.-|+.|=|.|+.||..|-...+  +|++.+       |+.+.+.+|.
T Consensus       346 YeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke  425 (629)
T KOG0963|consen  346 YEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKE  425 (629)
T ss_pred             HHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHH
Confidence             3445554   567786      34    46778999999999999999976553  454444       3444444444


Q ss_pred             HHHHH
Q 024197          261 LNAEL  265 (271)
Q Consensus       261 ~~eEL  265 (271)
                      -+..|
T Consensus       426 ~i~kl  430 (629)
T KOG0963|consen  426 LIAKL  430 (629)
T ss_pred             HHHHH
Confidence            44443

>TIGR00606 rad50 rad50

Probab=93.62  E-value=5.9  Score=43.95  Aligned_cols=187  Identities=13%  Similarity=0.168  Sum_probs=104.8

Q ss_pred             HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHH------
Q 024197           63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEK------  136 (271)
Q Consensus        63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e------  136 (271)
                      -|-.+++.++.++..|..+..+++.+.++..+-+.....+  . .-....-..+.+.+..|...-..++.+...      
T Consensus       896 el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL  972 (1311)
T TIGR00606       896 EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS--N-KKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL  972 (1311)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            3445555555556666666666666666554444333221  0 000111233334444444444444433321      


Q ss_pred             --HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024197          137 --AKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS  214 (271)
Q Consensus       137 --~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk  214 (271)
                        ....=..+...+...+.++..+...+..++.........-|.+    .-|+-+.++..++.+.+.++..+..++....
T Consensus       973 ~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l----~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~ 1048 (1311)
T TIGR00606       973 KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWL----QDNLTLRKRENELKEVEEELKQHLKEMGQMQ 1048 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence              1111112245566777777777777777766654433333322    4466666778888888888888888888776


Q ss_pred             cCCCchhHHHHHHHHHhHHHHHHHHhhhhh--cccchhhhHHHHHHHHHHH
Q 024197          215 FTANSKMGKALMAKCKTLQEENDEIGRQNE--EGETHQLSVKLALQKSLNA  263 (271)
Q Consensus       215 FTpdS~~GKrLmaKCR~LqeENEELGr~ls--egria~LE~eLAlqK~~~e  263 (271)
                      |       ..+-...+.|.++...|....+  .|.+.+|+.+++..+...+
T Consensus      1049 ~-------~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606      1049 V-------LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6       3455555666666666664433  3777888888877777663

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=93.62  E-value=5.2  Score=35.89  Aligned_cols=165  Identities=22%  Similarity=0.340  Sum_probs=104.1

Q ss_pred             hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHH
Q 024197           67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIV  146 (271)
Q Consensus        67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~  146 (271)
                      |+.-|..-...|..|..|...-+ .+++|+...-.  -+....+--|.++...-..++    .|+++|..++.++..+-.
T Consensus        17 L~n~l~elq~~l~~l~~ENk~Lk-~lq~Rq~kAL~--k~e~~e~~Lpqll~~h~eEvr----~Lr~~LR~~q~~~r~~~~   89 (194)
T PF15619_consen   17 LQNELAELQRKLQELRKENKTLK-QLQKRQEKALQ--KYEDTEAELPQLLQRHNEEVR----VLRERLRKSQEQERELER   89 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            33334333344444444433222 34666532221  123555666777765544444    466688888999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhcccCCCc----h
Q 024197          147 TFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE--NIAAVSFTANS----K  220 (271)
Q Consensus       147 rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~--ELsAwkFTpdS----~  220 (271)
                      ++-.++.||+.+..++..|+.....-..-=|.     ....-+..+..++++.+.++..+..  +|..-.|..+.    .
T Consensus        90 klk~~~~el~k~~~~l~~L~~L~~dknL~eRe-----eL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~k  164 (194)
T PF15619_consen   90 KLKDKDEELLKTKDELKHLKKLSEDKNLAERE-----ELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKK  164 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999997764321111122     2245567777888888888877764  34444454443    3


Q ss_pred             hHHHHHHHHHhHHHHHHHHhhhh
Q 024197          221 MGKALMAKCKTLQEENDEIGRQN  243 (271)
Q Consensus       221 ~GKrLmaKCR~LqeENEELGr~l  243 (271)
                      -.+.++..|..|+.|++.|...+
T Consensus       165 K~~~~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  165 KHKEAQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999988554

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=93.33  E-value=2.3  Score=43.52  Aligned_cols=42  Identities=17%  Similarity=0.123  Sum_probs=26.4

Q ss_pred             hhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Q 024197          122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVR  163 (271)
Q Consensus       122 ~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~  163 (271)
                      .|+..++.++.|.....--=+++..|+-.+|-|++...-+++
T Consensus       214 ~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~  255 (554)
T KOG4677|consen  214 KLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQ  255 (554)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            344445555555544444456777888888888887665544

>TIGR00634 recN DNA repair protein RecN

Probab=93.25  E-value=5  Score=40.49  Aligned_cols=87  Identities=15%  Similarity=0.300  Sum_probs=61.1

Q ss_pred             HHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc----------------hhH---HHHHHHHHhHHHHH
Q 024197          176 ARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS----------------KMG---KALMAKCKTLQEEN  236 (271)
Q Consensus       176 lR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS----------------~~G---KrLmaKCR~LqeEN  236 (271)
                      +..+ .||.+..+..+|.+-....+.-...++.-++...|+|+.                +.|   ..++.....++.|.
T Consensus       260 l~~~-~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL  338 (563)
T TIGR00634       260 LASV-IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEEL  338 (563)
T ss_pred             HHHh-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            4444 899988888888888877777777777777788888863                111   35677777777777


Q ss_pred             HHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 024197          237 DEIGRQNEEGETHQLSVKLALQKSLNAEL  265 (271)
Q Consensus       237 EELGr~lsegria~LE~eLAlqK~~~eEL  265 (271)
                      +.+.  ..+..+..|+.++...++...++
T Consensus       339 ~~l~--~~~~~le~L~~el~~l~~~l~~~  365 (563)
T TIGR00634       339 DQLD--DSDESLEALEEEVDKLEEELDKA  365 (563)
T ss_pred             HHHh--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            7776  34456777777777666555443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.04  E-value=6.6  Score=41.52  Aligned_cols=180  Identities=19%  Similarity=0.275  Sum_probs=98.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhcc----cCCCCCCCCChhhhHHHHHhhHhhHHHHHHHH---HHHHhHHHHHHHHHhh
Q 024197           78 LATCQLELEAAKSEIQKWHSSFQNE----LFIPPGTSPEPRLVINYLQTLKSSEEMLKEQL---EKAKKKEAAFIVTFAK  150 (271)
Q Consensus        78 ~~~~~~~l~~a~~ei~kW~~~fq~e----~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl---~e~krRE~vlv~rLAt  150 (271)
                      +..+.++++.-++||+.=|   |.|    ..|...++ ..+.+..+|+.||.--+.|+.-+   ..++..|.--+..|-.
T Consensus       420 ~~rLE~dvkkLraeLq~~R---q~E~ELRsqis~l~~-~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk  495 (697)
T PF09726_consen  420 ISRLEADVKKLRAELQSSR---QSEQELRSQISSLTN-NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK  495 (697)
T ss_pred             HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555444   222    11333333 34567777777777777776643   2334444433322222


Q ss_pred             HHHHH----HHHHHHHHHHHHhcC--------C----------chHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024197          151 REQEI----AELKSAVRDLKAQLK--------P----------PLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE  208 (271)
Q Consensus       151 KEQEi----qEl~sqi~dlK~~~~--------p----------s~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~  208 (271)
                      +=.|.    +.+-.||++-|....        |          ...++|.-.  --...++.+||.+|..++..+..++.
T Consensus       496 rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~--~~lE~E~~~lr~elk~kee~~~~~e~  573 (697)
T PF09726_consen  496 RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRR--RQLESELKKLRRELKQKEEQIRELES  573 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21121    223334444433221        1          112222211  12235799999999999999999999


Q ss_pred             hhhhcccC-CC-chhHHHHHHHHHhHHHHHHHHhhhhhc-ccch-hhhHHHHHHHHHHH
Q 024197          209 NIAAVSFT-AN-SKMGKALMAKCKTLQEENDEIGRQNEE-GETH-QLSVKLALQKSLNA  263 (271)
Q Consensus       209 ELsAwkFT-pd-S~~GKrLmaKCR~LqeENEELGr~lse-gria-~LE~eLAlqK~~~e  263 (271)
                      +++...-- -+ .+---.||+-...+|+.|.-|-+.++. .||. .|..-|.-.|.+.|
T Consensus       574 ~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~e  632 (697)
T PF09726_consen  574 ELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLE  632 (697)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            88644332 33 356788999999999999999988864 4443 24444444444443

; GO: 0016021 integral to membrane

>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains

Probab=92.85  E-value=9  Score=36.49  Aligned_cols=202  Identities=16%  Similarity=0.206  Sum_probs=123.7

Q ss_pred             CCCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197           56 APGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE  135 (271)
Q Consensus        56 ~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~  135 (271)
                      +.+..+..+-.|..-.++|...|..|...|+.=..++.+-+..|.. .+-..-...-+       ..|++-=.+++..|.
T Consensus        67 g~~~~~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~-~Wtr~~S~~~~-------~~l~~~~~k~~~~L~  138 (356)
T cd09237          67 KSSSVDSQLELLRPQSASWVNEIDSSYNDLDEEMKEIEKMRKKILA-KWTQSPSSSLT-------ASLREDLVKLKKSLV  138 (356)
T ss_pred             cCCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccchhhh-------HHHHHHHHHHHHHHH
Confidence            3445556788899999999999999999999999999888876665 23222222222       244555567777888


Q ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc-CCchHHHHHhhhC----h---hHHHHHHHHHHHHH---HHHHHHH
Q 024197          136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL-KPPLMQARRLLLD----P---AIHEEFRRLKNLVE---EKDKKVK  204 (271)
Q Consensus       136 e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~-~ps~~qlR~~LlD----P---AVNlef~rLr~eLe---e~~~kle  204 (271)
                      ++..=.+.+...+..-+..|.-+......|.... .|+...-.-.++|    +   .|...+.+|+..+.   ..+.+-.
T Consensus       139 ~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~  218 (356)
T cd09237         139 EASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQ  218 (356)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888888888877767776643 2332111112333    2   47667777775544   3444444


Q ss_pred             HHHHhhhhcccCCCchhHHHHHHHHHhHHH-HH----HHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197          205 ELEENIAAVSFTANSKMGKALMAKCKTLQE-EN----DEIGRQNEEGETHQLSVKLALQKSLNAELKSQF  269 (271)
Q Consensus       205 ~aq~ELsAwkFTpdS~~GKrLmaKCR~Lqe-EN----EELGr~lsegria~LE~eLAlqK~~~eELrk~~  269 (271)
                      ..-.+|.. +-.-+.. ...||.--+.+.. +.    +||++-  ..-...|+..+..|.....+|+.++
T Consensus       219 ~~~~~Lk~-k~~~DDI-~~~ll~~~~~~~~~~e~lF~~eL~kf--~p~~~~l~~~~~~Q~~ll~el~~~~  284 (356)
T cd09237         219 RVLKDLKQ-KIHNDDI-SDILILNSKSKSEIEKQLFPEELEKF--KPLQNRLEATIFKQSSLINELKIEL  284 (356)
T ss_pred             HHHHHHHH-HHhccch-HHHHHHhcccccchHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444422 1122222 2334433322211 10    266652  2445677777888888888887754

This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.60  E-value=3.3  Score=37.02  Aligned_cols=97  Identities=24%  Similarity=0.360  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024197          129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE  208 (271)
Q Consensus       129 ~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~  208 (271)
                      +||+++.+.+++|.-.-..++...+|...+.-.|..+..-    ...|+.-+.      .|.+-+..|..++.++..++.
T Consensus        31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e----~~eL~k~L~------~y~kdK~~L~~~k~rl~~~ek  100 (201)
T PF13851_consen   31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE----VEELRKQLK------NYEKDKQSLQNLKARLKELEK  100 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777766666666666666666555554322    223443332      255666666666666666666


Q ss_pred             hhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197          209 NIAAVSFTANSKMGKALMAKCKTLQEENDEIG  240 (271)
Q Consensus       209 ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG  240 (271)
                      +|...+.-.+.     |-.+|..|+.|-++|-
T Consensus       101 ~l~~Lk~e~ev-----L~qr~~kle~ErdeL~  127 (201)
T PF13851_consen  101 ELKDLKWEHEV-----LEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence            66666554444     6666666666666665

>PRK03918 chromosome segregation protein; Provisional

Probab=92.56  E-value=15  Score=38.22  Aligned_cols=50  Identities=26%  Similarity=0.367  Sum_probs=27.7

Q ss_pred             HHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197          119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ  168 (271)
Q Consensus       119 ~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~  168 (271)
                      .++.++.-...++.++.....+=.-+-..+...++++.++...+..+...
T Consensus       232 ~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~  281 (880)
T PRK03918        232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK  281 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555555544455555667777777666666665443

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=92.56  E-value=6.9  Score=35.96  Aligned_cols=143  Identities=20%  Similarity=0.275  Sum_probs=94.0

Q ss_pred             HHHhhHHHHHhchhhhhh-------hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197           63 MILSLRESLQNCKDTLAT-------CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE  135 (271)
Q Consensus        63 ~il~lr~~l~~~~~~~~~-------~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~  135 (271)
                      .|-.....|...+.++|.       ++.+++.+...+.+|.+..+--  +.+|....-+-+....+.|...=..++.++.
T Consensus        32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A--l~~g~E~LAr~al~~~~~le~~~~~~~~~~~  109 (225)
T COG1842          32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA--LQAGNEDLAREALEEKQSLEDLAKALEAELQ  109 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666664       4667888999999999544433  5566655555555555555555555666676


Q ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCch----HHHHHhhhCh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 024197          136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL----MQARRLLLDP-AIHEEFRRLKNLVEEKDKKVKELE  207 (271)
Q Consensus       136 e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~----~qlR~~LlDP-AVNlef~rLr~eLee~~~kle~aq  207 (271)
                      .+.--..-+-..+..+++.|.+++++...+++-.....    +.-.....+| .--..|.+|+..+++.+.+..-..
T Consensus       110 ~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~  186 (225)
T COG1842         110 QAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAA  186 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhH
Confidence            66655556666778888888888888888876654432    2233445565 455678999999998887765544

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=92.19  E-value=9.1  Score=39.72  Aligned_cols=125  Identities=21%  Similarity=0.280  Sum_probs=90.2

Q ss_pred             HHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc-----------hHHHHHhhhCh---
Q 024197          118 NYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP-----------LMQARRLLLDP---  183 (271)
Q Consensus       118 ~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps-----------~~qlR~~LlDP---  183 (271)
                      +....++.+-++=|+.+++..-|=+.|+-+.=.+|.|...|...|..+|..-...           ...+|.++-+-   
T Consensus        28 ~~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~  107 (546)
T KOG0977|consen   28 NAASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARE  107 (546)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHH
Confidence            3456678888888999999999999999999999999999999999998876333           35566665554   


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhcccCCCchhH--HHHHHHHHhHHHHHHHHhhh
Q 024197          184 --AIHEEFRRLKNLVEEKDKKVKELE-------ENIAAVSFTANSKMG--KALMAKCKTLQEENDEIGRQ  242 (271)
Q Consensus       184 --AVNlef~rLr~eLee~~~kle~aq-------~ELsAwkFTpdS~~G--KrLmaKCR~LqeENEELGr~  242 (271)
                        -+-..|.+|+.++++++.+++.++       +++.-|-+.+...-+  ..+-++.+.|.+|+..|.+.
T Consensus       108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e  177 (546)
T KOG0977|consen  108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE  177 (546)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              245678888888888888888775       555666666665444  23334444555555554433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=92.15  E-value=1.5  Score=46.56  Aligned_cols=114  Identities=22%  Similarity=0.295  Sum_probs=91.9

Q ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197          134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV  213 (271)
Q Consensus       134 l~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAw  213 (271)
                      |+++.-||.-|+.||..++.|+..++..+.-.++-..             -++.+.+.|+...+..+.....++++|.-.
T Consensus        22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~-------------rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~   88 (717)
T PF09730_consen   22 LQESASKEAYLQQRILELENELKQLRQELSNVQAENE-------------RLSQLNQELRKECEDLELERKRLREEIKEY   88 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999998888776654422             245567788888888888888888999888


Q ss_pred             ccCCCchhHHHHHHHHHhHHHHHHHHhhhhhccc------------chhhhHHHHHHHHHHHHH
Q 024197          214 SFTANSKMGKALMAKCKTLQEENDEIGRQNEEGE------------THQLSVKLALQKSLNAEL  265 (271)
Q Consensus       214 kFTpdS~~GKrLmaKCR~LqeENEELGr~lsegr------------ia~LE~eLAlqK~~~eEL  265 (271)
                      ||--     .|||+-+--|.+||=-|-|++|.=|            |.+|+-++.+.+++++|+
T Consensus        89 K~rE-----~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~  147 (717)
T PF09730_consen   89 KFRE-----ARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA  147 (717)
T ss_pred             HHHH-----HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8753     5699999999999999999998644            566777777777777765

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=92.12  E-value=13  Score=38.76  Aligned_cols=145  Identities=15%  Similarity=0.257  Sum_probs=90.3

Q ss_pred             CCCCCChhhhHHHHHhhHh--hHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChh
Q 024197          107 PGTSPEPRLVINYLQTLKS--SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPA  184 (271)
Q Consensus       107 a~~~~~~~l~~~~l~~Lk~--sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPA  184 (271)
                      .-++++|.....-+..|-+  .+..+.....++.+--..+-.+|...++++.+...+++++|..+.-         +||.
T Consensus       233 s~~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~---------~d~~  303 (726)
T PRK09841        233 TMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS---------VDLN  303 (726)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------CCCC
Confidence            3467888887765555433  2445555566666666778889999999999999999999988742         2322


Q ss_pred             HH-----HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhc-----ccchhhhHH
Q 024197          185 IH-----EEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE-----GETHQLSVK  254 (271)
Q Consensus       185 VN-----lef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lse-----gria~LE~e  254 (271)
                      ..     ..+..|+.++.+.+.+.    .+|.+ .|+|+++.=+.|-++...|+++.+++-..+..     -...+|+.+
T Consensus       304 ~ea~~~l~~~~~l~~ql~~l~~~~----~~l~~-~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~  378 (726)
T PRK09841        304 LEAKAVLEQIVNVDNQLNELTFRE----AEISQ-LYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRD  378 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            11     12233444444433322    44443 68999998888888888888888777655422     122344444


Q ss_pred             HHHHHHHHHHH
Q 024197          255 LALQKSLNAEL  265 (271)
Q Consensus       255 LAlqK~~~eEL  265 (271)
                      ....+..-+.|
T Consensus       379 ~~~~~~lY~~l  389 (726)
T PRK09841        379 VEAGRAVYLQL  389 (726)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=92.05  E-value=6.4  Score=39.74  Aligned_cols=79  Identities=30%  Similarity=0.365  Sum_probs=59.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q 024197           77 TLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIA  156 (271)
Q Consensus        77 ~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiq  156 (271)
                      .|.+...+|+.++..|++=+    .          +-..+...+.+|+.-=++.|..+..++.|+...-..+++++-++.
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k----~----------E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~  347 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAK----E----------EASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELN  347 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Confidence            36666777777777776655    1          224455667777777788888888999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 024197          157 ELKSAVRDLKAQL  169 (271)
Q Consensus       157 El~sqi~dlK~~~  169 (271)
                      .++..|...+...
T Consensus       348 ~~r~eLea~~~~e  360 (522)
T PF05701_consen  348 KTRSELEAAKAEE  360 (522)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999887765543

Several sequences in this family are described as being myosin heavy chain-like.

>PHA02562 46 endonuclease subunit; Provisional

Probab=91.87  E-value=14  Score=36.31  Aligned_cols=16  Identities=25%  Similarity=0.484  Sum_probs=6.3

Q ss_pred             hHHHHHHHHHHHHHHH
Q 024197          150 KREQEIAELKSAVRDL  165 (271)
Q Consensus       150 tKEQEiqEl~sqi~dl  165 (271)
                      ..+.++.++..++..+
T Consensus       303 ~l~d~i~~l~~~l~~l  318 (562)
T PHA02562        303 KIKDKLKELQHSLEKL  318 (562)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444444444333

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.61  E-value=22  Score=38.12  Aligned_cols=186  Identities=22%  Similarity=0.239  Sum_probs=102.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhhc--ccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHH----hHHHHHHHHH
Q 024197           75 KDTLATCQLELEAAKSEIQKWHSSFQN--ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAK----KKEAAFIVTF  148 (271)
Q Consensus        75 ~~~~~~~~~~l~~a~~ei~kW~~~fq~--e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~k----rRE~vlv~rL  148 (271)
                      -+-++++|++.+.+..+..|=.+-...  ++=+.-...-..++-..+ ..++.-|.++++|+.+.+    -+=......+
T Consensus        68 ~~~l~~Lqns~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q-~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~  146 (716)
T KOG4593|consen   68 EDELMQLQNSHKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQ-EALKGQEEKLQEQLERNRNQCQANLKKELELL  146 (716)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888777777665533322  222322222233444444 677888888888886554    2222223344


Q ss_pred             hhHHHHHHHHHHHHHHHHHhc-----CCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHH
Q 024197          149 AKREQEIAELKSAVRDLKAQL-----KPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK  223 (271)
Q Consensus       149 AtKEQEiqEl~sqi~dlK~~~-----~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GK  223 (271)
                      -.++..++++.+.+.-+....     ..-.-..+-..++-.|+.+-.+++......+.++...++...+..=-.++    
T Consensus       147 ~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~----  222 (716)
T KOG4593|consen  147 REKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADH----  222 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            556666666666655543332     11123345566788888888888887777777777766555433110000    


Q ss_pred             HHHHHHH-----hHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHh
Q 024197          224 ALMAKCK-----TLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS  267 (271)
Q Consensus       224 rLmaKCR-----~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk  267 (271)
                       .|+..-     .+.+|.+.+.+... ..|+.|+-....+..+.+|+++
T Consensus       223 -~qq~a~~~~ql~~~~ele~i~~~~~-dqlqel~~l~~a~~q~~ee~~~  269 (716)
T KOG4593|consen  223 -EQQNAELEQQLSLSEELEAINKNMK-DQLQELEELERALSQLREELAT  269 (716)
T ss_pred             -HHHHhhHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence             111100     12335555555554 5666666666666666666653

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=90.98  E-value=19  Score=39.64  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=14.9

Q ss_pred             HHhhHHHHHhchhhhhhhHHHHHHHHHHH
Q 024197           64 ILSLRESLQNCKDTLATCQLELEAAKSEI   92 (271)
Q Consensus        64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei   92 (271)
                      |-.++..+..|...+.+.+.++..+...+
T Consensus       676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1163)
T COG1196         676 LAELEAQLEKLEEELKSLKNELRSLEDLL  704 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.77  E-value=18  Score=40.44  Aligned_cols=136  Identities=20%  Similarity=0.273  Sum_probs=91.2

Q ss_pred             hhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHH---HHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHH
Q 024197          122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQ---EIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE  198 (271)
Q Consensus       122 ~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQ---EiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee  198 (271)
                      .|+....++.++-.+..+||+.+..-...-|+   |+.-.+.++..+.....             .+-.++..|+..+..
T Consensus       795 eik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~-------------~l~~e~~~l~~kv~~  861 (1174)
T KOG0933|consen  795 EIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQIS-------------SLKSELGNLEAKVDK  861 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHh
Confidence            34555566666667778888877665554443   33333444443332211             133455667777777


Q ss_pred             HHHHHHHHHHhhhhc--ccCCCchhHHHHHHHHHhHHHHHH--HHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197          199 KDKKVKELEENIAAV--SFTANSKMGKALMAKCKTLQEEND--EIGRQNEEGETHQLSVKLALQKSLNAELKSQFE  270 (271)
Q Consensus       199 ~~~kle~aq~ELsAw--kFTpdS~~GKrLmaKCR~LqeENE--ELGr~lsegria~LE~eLAlqK~~~eELrk~~e  270 (271)
                      ....++.++.+|.-.  ++...++.=.-++..|.....|+.  +|-+.-.++++..++++-+..++.++-|.+.|.
T Consensus       862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~  937 (1174)
T KOG0933|consen  862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHE  937 (1174)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhcc
Confidence            777777777766443  455556555668999999999987  567778889999999999999999988877663

>TIGR00606 rad50 rad50

Probab=90.70  E-value=6.3  Score=43.72  Aligned_cols=28  Identities=11%  Similarity=0.299  Sum_probs=19.7

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcCCc
Q 024197          145 IVTFAKREQEIAELKSAVRDLKAQLKPP  172 (271)
Q Consensus       145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps  172 (271)
                      +..|....+++.++..+|.++.....+.
T Consensus       791 v~~i~r~~~ei~~l~~qie~l~~~l~~~  818 (1311)
T TIGR00606       791 VTIMERFQMELKDVERKIAQQAAKLQGS  818 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3444566788888888888887765543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=90.62  E-value=7.8  Score=41.34  Aligned_cols=50  Identities=24%  Similarity=0.345  Sum_probs=43.6

Q ss_pred             HhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC
Q 024197          121 QTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLK  170 (271)
Q Consensus       121 ~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~  170 (271)
                      ..+..--..|+..+.+.+-||.-++.=.+.+|-|.--+.-+|+.||..+.
T Consensus        72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv  121 (717)
T PF09730_consen   72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV  121 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence            34444456788999999999999999999999999999999999999863

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=90.53  E-value=3.8  Score=39.95  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=17.7

Q ss_pred             ccCCCchhHHHHHHHHHhHHHHHHH
Q 024197          214 SFTANSKMGKALMAKCKTLQEENDE  238 (271)
Q Consensus       214 kFTpdS~~GKrLmaKCR~LqeENEE  238 (271)
                      +|+|+.+.=+.|-++...|+....+
T Consensus       269 ~y~~~hP~v~~l~~qi~~l~~~l~~  293 (498)
T TIGR03007       269 RYTDKHPDVIATKREIAQLEEQKEE  293 (498)
T ss_pred             HhcccChHHHHHHHHHHHHHHHHHh
Confidence            6788887777777777777766443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=90.38  E-value=10  Score=33.94  Aligned_cols=170  Identities=17%  Similarity=0.263  Sum_probs=93.2

Q ss_pred             HHHhhHHHHHhchhhhhhh-------HHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhH---HHHHH
Q 024197           63 MILSLRESLQNCKDTLATC-------QLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSE---EMLKE  132 (271)
Q Consensus        63 ~il~lr~~l~~~~~~~~~~-------~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE---~~Lke  132 (271)
                      +|-.+++.|...+..+|..       +.+++.+...+.+|.+....-  +..|.   ..|-...|..-...+   ..|+.
T Consensus        32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~A--l~~G~---EdLAr~Al~~k~~~~~~~~~l~~  106 (219)
T TIGR02977        32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELA--LSKGR---EDLARAALIEKQKAQELAEALER  106 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777777765       557788889999999554433  44453   344444444333333   34555


Q ss_pred             HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchH--HHHHhhh--C-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 024197          133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLM--QARRLLL--D-PAIHEEFRRLKNLVEEKDKKVKELE  207 (271)
Q Consensus       133 Ql~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~--qlR~~Ll--D-PAVNlef~rLr~eLee~~~kle~aq  207 (271)
                      |+...+.--.-|-.+|..++..|.++++.-..|..-......  +....+-  | ..-...|.||...+...+...+.. 
T Consensus       107 ~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~-  185 (219)
T TIGR02977       107 ELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESY-  185 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh-
Confidence            665555555556666666666666666654444332222211  1112211  1 122345677777766655443332 


Q ss_pred             HhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHH
Q 024197          208 ENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSL  261 (271)
Q Consensus       208 ~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~  261 (271)
                          +. -++            ..|..+..+||.    +  ..++.+|+.+|..
T Consensus       186 ----~~-~~~------------~~l~~~l~~l~~----~--~~vd~eLa~LK~~  216 (219)
T TIGR02977       186 ----DL-GRK------------PSLEDEFAELEA----D--DEIERELAALKAK  216 (219)
T ss_pred             ----hc-cCC------------CCHHHHHHHhcC----C--ChHHHHHHHHHhh
Confidence                21 112            236666667762    1  4678888888764

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=89.81  E-value=17  Score=33.82  Aligned_cols=15  Identities=13%  Similarity=0.091  Sum_probs=6.1

Q ss_pred             hhhhhHHHHHHHHHH
Q 024197           77 TLATCQLELEAAKSE   91 (271)
Q Consensus        77 ~~~~~~~~l~~a~~e   91 (271)
                      .+.+++++++.++.+
T Consensus        82 ~l~~l~~~~~~l~a~   96 (423)
T TIGR01843        82 DAAELESQVLRLEAE   96 (423)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444443333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.23  E-value=4.2  Score=38.65  Aligned_cols=124  Identities=15%  Similarity=0.197  Sum_probs=51.7

Q ss_pred             hc-hhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhH
Q 024197           73 NC-KDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR  151 (271)
Q Consensus        73 ~~-~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtK  151 (271)
                      +| +..+..++.+++.+..|.+.+..-+..-.-. ...+.+-.-+..++..|+.-|+.+.++|.+..+-...+...|..+
T Consensus         5 eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~-~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l   83 (314)
T PF04111_consen    5 ECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEE-SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEEL   83 (314)
T ss_dssp             --------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45 4556778999999999999988544432200 111233345566777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197          152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI  210 (271)
Q Consensus       152 EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL  210 (271)
                      +.|..++...-..+-..             -.........+..+....+..+..+++.|
T Consensus        84 e~e~~~l~~eE~~~~~~-------------~n~~~~~l~~~~~e~~sl~~q~~~~~~~L  129 (314)
T PF04111_consen   84 EEELEELDEEEEEYWRE-------------YNELQLELIEFQEERDSLKNQYEYASNQL  129 (314)
T ss_dssp             HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666665533322111             12233444555566666666666666655

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF13514 AAA_27: AAA domain

Probab=89.06  E-value=39  Score=37.01  Aligned_cols=97  Identities=24%  Similarity=0.409  Sum_probs=59.6

Q ss_pred             hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhccc-CCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHH
Q 024197           67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNEL-FIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFI  145 (271)
Q Consensus        67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~-~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv  145 (271)
                      |.+.++.....+..++.++..+..++..|+..++.-- -++-.....|..+...+..++..-+.+++.    .    -+-
T Consensus       678 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~----~----~~~  749 (1111)
T PF13514_consen  678 LEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEI----R----ELR  749 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----H----HHH
Confidence            4455566777778888888888888888887776411 121122234666666666666544433322    1    233


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHhcCC
Q 024197          146 VTFAKREQEIAELKSAVRDLKAQLKP  171 (271)
Q Consensus       146 ~rLAtKEQEiqEl~sqi~dlK~~~~p  171 (271)
                      .+++..++++..+...++.|-....|
T Consensus       750 ~ri~~~~~~~~~f~~~~~~L~~~l~~  775 (1111)
T PF13514_consen  750 RRIEQMEADLAAFEEQVAALAERLGP  775 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            46777778888888888877655544

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=88.71  E-value=18  Score=38.93  Aligned_cols=148  Identities=23%  Similarity=0.282  Sum_probs=79.9

Q ss_pred             HHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHh-hhChhHHHHHHHHHHH
Q 024197          117 INYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRL-LLDPAIHEEFRRLKNL  195 (271)
Q Consensus       117 ~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~-LlDPAVNlef~rLr~e  195 (271)
                      .+.+..|+..-+.|.-.|.+....=-.+.++|-..|+-|.++++++..++..-.-.-.++.+. -.-..+-.=+.-+..+
T Consensus       595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E  674 (769)
T PF05911_consen  595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE  674 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            344555555555555555555545455556666666666666666665543322222333322 1111111112234566


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcc-------------cchhhhHHHHHHHHHH
Q 024197          196 VEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEG-------------ETHQLSVKLALQKSLN  262 (271)
Q Consensus       196 Lee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lseg-------------ria~LE~eLAlqK~~~  262 (271)
                      +.....++..+..+|..-+...+-     +.+||+.|+.+.+-..+.....             -|+.-...||-+.+.+
T Consensus       675 ~~~l~~Ki~~Le~Ele~er~~~~e-----~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI  749 (769)
T PF05911_consen  675 AEELQSKISSLEEELEKERALSEE-----LEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETI  749 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchh-----hhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHH
Confidence            677777777777777766655444     8999999998877665432211             2223334455666666


Q ss_pred             HHHHhhh
Q 024197          263 AELKSQF  269 (271)
Q Consensus       263 eELrk~~  269 (271)
                      .=|-+++
T Consensus       750 ~sLGkQL  756 (769)
T PF05911_consen  750 ASLGKQL  756 (769)
T ss_pred             HHHHHHH
Confidence            6665554

The function of this family is unknown.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=88.36  E-value=27  Score=35.31  Aligned_cols=66  Identities=17%  Similarity=0.176  Sum_probs=32.7

Q ss_pred             hhhhhhHHHHHHHHHHH-HHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Q 024197           76 DTLATCQLELEAAKSEI-QKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQE  154 (271)
Q Consensus        76 ~~~~~~~~~l~~a~~ei-~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQE  154 (271)
                      ..|...+.++++-..+| ..|+.               ..-+...|..++..=.++..|+.++...-..+-..|+..+..
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~---------------~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~  102 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQ---------------RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR  102 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence            44555566666655555 33431               122334444455555555555555555555555555554444


Q ss_pred             HH
Q 024197          155 IA  156 (271)
Q Consensus       155 iq  156 (271)
                      +.
T Consensus       103 l~  104 (420)
T COG4942         103 LN  104 (420)
T ss_pred             HH
Confidence            43

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=88.33  E-value=14  Score=31.04  Aligned_cols=105  Identities=23%  Similarity=0.346  Sum_probs=73.3

Q ss_pred             hcCCCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHH
Q 024197           54 ETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQ  133 (271)
Q Consensus        54 ~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQ  133 (271)
                      ..+.|..+++|=.|-..|..+..-+++++.++.....+=+.-    ..| ++ ...     -..+.+.....-=..|+.+
T Consensus         8 ~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l----~~E-iv-~l~-----~~~e~~~~~~~~~~~L~~e   76 (120)
T PF12325_consen    8 TSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDEL----REE-IV-KLM-----EENEELRALKKEVEELEQE   76 (120)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HH-HHH-----HHHHHHHHHHHHHHHHHHH
Confidence            345677777888888888888888888877776654432222    222 11 100     0112233344444578889


Q ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197          134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL  169 (271)
Q Consensus       134 l~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~  169 (271)
                      +.+...|...++--|-.|.-++.|++.-|.|+|.+-
T Consensus        77 l~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my  112 (120)
T PF12325_consen   77 LEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY  112 (120)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999873

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=88.19  E-value=18  Score=35.24  Aligned_cols=155  Identities=21%  Similarity=0.242  Sum_probs=99.5

Q ss_pred             HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHH
Q 024197           63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEA  142 (271)
Q Consensus        63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~  142 (271)
                      ++-..|+.-..-+..+..++..|..|+++|.--+..+..-.....+.++.+..         .-.+.|=.||.+++    
T Consensus        73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---------~ere~lV~qLEk~~----  139 (319)
T PF09789_consen   73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---------HEREDLVEQLEKLR----  139 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---------hHHHHHHHHHHHHH----
Confidence            55567777778888999999999999999988887666543333333322211         11222222332222    


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhH
Q 024197          143 AFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG  222 (271)
Q Consensus       143 vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~G  222 (271)
                                ..+..+.   +|+++.                 --+...+..|-+.++.|+..++.||+.+=-.-.+   
T Consensus       140 ----------~q~~qLe---~d~qs~-----------------lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~---  186 (319)
T PF09789_consen  140 ----------EQIEQLE---RDLQSL-----------------LDEKEELVTERDAYKCKAHRLNHELNYILNGDEN---  186 (319)
T ss_pred             ----------HHHHHHH---HHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---
Confidence                      2222222   222222                 2355777788889999999999999876433222   


Q ss_pred             HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197          223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE  270 (271)
Q Consensus       223 KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e  270 (271)
                       +++ =+..|.-||-.|-     -|+.+++.|..+.+..+.-.|+.++
T Consensus       187 -riv-DIDaLi~ENRyL~-----erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  187 -RIV-DIDALIMENRYLK-----ERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             -Ccc-cHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             344 5788888998887     5668888888888888877776553

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.13  E-value=24  Score=33.41  Aligned_cols=54  Identities=24%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhccc
Q 024197          189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGE  247 (271)
Q Consensus       189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegr  247 (271)
                      +..+..+|...+.++.+++.++..++=.=     ..+-++...++.+..++.+.....|
T Consensus       218 L~~~~~~i~~~k~~l~el~~el~~l~~~i-----~~~~~~k~~l~~eI~e~~~~~~~~r  271 (325)
T PF08317_consen  218 LAEQKEEIEAKKKELAELQEELEELEEKI-----EELEEQKQELLAEIAEAEKIREECR  271 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444445555555555555555552111     2355566666667777766664443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.03  E-value=18  Score=40.43  Aligned_cols=88  Identities=19%  Similarity=0.313  Sum_probs=53.3

Q ss_pred             HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024197          135 EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS  214 (271)
Q Consensus       135 ~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk  214 (271)
                      .+.+.+|+-.----+.+|-++-++...|..+++-...++..+...      -.+|.+|.-|+++.++.+.-.+..|..  
T Consensus       769 ~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~------~~e~e~l~lE~e~l~~e~~~~k~~l~~--  840 (1174)
T KOG0933|consen  769 DKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKR------ENEYERLQLEHEELEKEISSLKQQLEQ--  840 (1174)
T ss_pred             HHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            344556666665666667777777777666655544443333222      135666777777777666666666544  


Q ss_pred             cCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197          215 FTANSKMGKALMAKCKTLQEENDEIG  240 (271)
Q Consensus       215 FTpdS~~GKrLmaKCR~LqeENEELG  240 (271)
                                +...|+.|..|+.+|-
T Consensus       841 ----------~~~~~~~l~~e~~~l~  856 (1174)
T KOG0933|consen  841 ----------LEKQISSLKSELGNLE  856 (1174)
T ss_pred             ----------HHHHHHHHHHHHHHHH
Confidence                      4567777777777665

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.93  E-value=29  Score=34.10  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=9.8

Q ss_pred             HHHHHhhHhhHHHHHHHHHHH
Q 024197          117 INYLQTLKSSEEMLKEQLEKA  137 (271)
Q Consensus       117 ~~~l~~Lk~sE~~LkeQl~e~  137 (271)
                      .+.+..|...-..|+.|+.+.
T Consensus       298 ~~~~~~l~d~i~~l~~~l~~l  318 (562)
T PHA02562        298 PDRITKIKDKLKELQHSLEKL  318 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444455444433

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=87.46  E-value=22  Score=36.78  Aligned_cols=52  Identities=17%  Similarity=0.227  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHH-HHHHhhhh
Q 024197          187 EEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEE-NDEIGRQN  243 (271)
Q Consensus       187 lef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeE-NEELGr~l  243 (271)
                      -.|+.||.++.+.+.++.++..     +|+|+.+.=+.|-+....|+.+ .+|+.+.+
T Consensus       288 ~~i~~L~~~l~~l~~~~~~l~~-----~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~  340 (754)
T TIGR01005       288 DLIQRLRERQAELRATIADLST-----TMLANHPRVVAAKSSLADLDAQIRSELQKIT  340 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777776666655443     5789888877777777777766 34555544

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK09039 hypothetical protein; Validated

Probab=87.11  E-value=30  Score=33.37  Aligned_cols=25  Identities=16%  Similarity=0.264  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197          189 FRRLKNLVEEKDKKVKELEENIAAV  213 (271)
Q Consensus       189 f~rLr~eLee~~~kle~aq~ELsAw  213 (271)
                      +.+|+++|+..+..+..++.+|.+.
T Consensus       139 V~~L~~qI~aLr~Qla~le~~L~~a  163 (343)
T PRK09039        139 VELLNQQIAALRRQLAALEAALDAS  163 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666666554

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=86.79  E-value=47  Score=35.35  Aligned_cols=55  Identities=20%  Similarity=0.269  Sum_probs=40.0

Q ss_pred             hhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197          115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL  169 (271)
Q Consensus       115 l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~  169 (271)
                      -+..+|+..|..|..|+.|+.-...=|..+-..|..+.+|..++.+-++.|-.+.
T Consensus       429 kLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR  483 (697)
T PF09726_consen  429 KLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR  483 (697)
T ss_pred             HHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777788888888766666666777777888888888888777775554

; GO: 0016021 integral to membrane

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=86.42  E-value=78  Score=37.52  Aligned_cols=83  Identities=30%  Similarity=0.424  Sum_probs=55.5

Q ss_pred             HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHH
Q 024197           64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAA  143 (271)
Q Consensus        64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~v  143 (271)
                      |..|+..|..-+.-+-.|.+++.-.+.+.++|+-.+|.  ++..-..++|    +++.+|++-=.+|+..+.        
T Consensus      1259 l~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~--L~~k~k~~d~----~~~~kL~~ei~~Lk~el~-------- 1324 (1822)
T KOG4674|consen 1259 LAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQD--LLEKYKDSDK----NDYEKLKSEISRLKEELE-------- 1324 (1822)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCH----HHHHHHHHHHHHHHHHHH--------
Confidence            45566666677777788888888999999999976665  2334445555    556666665455555543        


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHH
Q 024197          144 FIVTFAKREQEIAELKSAVRDLK  166 (271)
Q Consensus       144 lv~rLAtKEQEiqEl~sqi~dlK  166 (271)
                            .++-.|++|..-+..++
T Consensus      1325 ------~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1325 ------EKENLIAELKKELNRLQ 1341 (1822)
T ss_pred             ------HHHHHHHHHHHHHHHHH
Confidence                  56666677776666666

>PRK10698 phage shock protein PspA; Provisional

Probab=86.39  E-value=25  Score=31.87  Aligned_cols=171  Identities=18%  Similarity=0.258  Sum_probs=86.7

Q ss_pred             HHHHhhHHHHHhchhhhhh-------hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHH---HHH
Q 024197           62 GMILSLRESLQNCKDTLAT-------CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEE---MLK  131 (271)
Q Consensus        62 ~~il~lr~~l~~~~~~~~~-------~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~---~Lk  131 (271)
                      =+|-.+++.|.+.+..+|.       ++.++..+...+.+|.....-  -+.+|..   .|-...|..=+..++   .|+
T Consensus        31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~--Al~~G~E---dLAr~AL~~K~~~~~~~~~l~  105 (222)
T PRK10698         31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAEL--ALRKEKE---DLARAALIEKQKLTDLIATLE  105 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence            3677778888888877776       556788889999999854332  2545543   333332222222222   233


Q ss_pred             HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc--hHHHHHhh----hChhHHHHHHHHHHHHHHHHHHHHH
Q 024197          132 EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP--LMQARRLL----LDPAIHEEFRRLKNLVEEKDKKVKE  205 (271)
Q Consensus       132 eQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps--~~qlR~~L----lDPAVNlef~rLr~eLee~~~kle~  205 (271)
                      .|+.....--.-|-..+..++..|.+.++.-..|..-++..  ..+++.++    .+.++. .|.+|...|...+.+.+-
T Consensus       106 ~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~-~f~rmE~ki~~~Ea~aea  184 (222)
T PRK10698        106 HEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMA-RFESFERRIDQMEAEAES  184 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHH-HHHHHHHHHHHHHHHHhH
Confidence            33333333333333444444444444444433332222111  11122222    233333 567777777777666654


Q ss_pred             HHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 024197          206 LEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN  262 (271)
Q Consensus       206 aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~  262 (271)
                      .       ...+.           ..|..|-.+|+.    +  ..++.+|+.+|..+
T Consensus       185 ~-------~~~~~-----------~~l~~e~~~le~----~--~~ve~ELa~LK~~~  217 (222)
T PRK10698        185 H-------GFGKQ-----------KSLDQQFAELKA----D--DEISEQLAALKAKM  217 (222)
T ss_pred             h-------hccCC-----------CCHHHHHHHhhc----c--chHHHHHHHHHHHh
Confidence            3       11111           236666666642    1  35888888888654

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=86.34  E-value=75  Score=37.85  Aligned_cols=147  Identities=24%  Similarity=0.304  Sum_probs=83.3

Q ss_pred             HhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhCh-h----HHHHHHHHHHHHHH
Q 024197          124 KSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDP-A----IHEEFRRLKNLVEE  198 (271)
Q Consensus       124 k~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDP-A----VNlef~rLr~eLee  198 (271)
                      .+.......|++--++||.=+..-=...|.+.-+..+++.++|..|..+...+...+.+- -    +...-+.|..++..
T Consensus      1142 ee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~ 1221 (1930)
T KOG0161|consen 1142 EEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIAD 1221 (1930)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555556777766666677777777888888888888776665555333321 1    12222222222222


Q ss_pred             HHHHHH--------------HHHHhhhhcccCCC--chhHHHHHHHHHhHHHHHHHHhhhhhc--ccchhhhHHHHHHHH
Q 024197          199 KDKKVK--------------ELEENIAAVSFTAN--SKMGKALMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQKS  260 (271)
Q Consensus       199 ~~~kle--------------~aq~ELsAwkFTpd--S~~GKrLmaKCR~LqeENEELGr~lse--gria~LE~eLAlqK~  260 (271)
                      ....+.              .+...|+..+.--+  ...-.-|++++-.|+.||.++.+++.+  ..+..+........+
T Consensus      1222 l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ 1301 (1930)
T KOG0161|consen 1222 LAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALES 1301 (1930)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence            222222              22222222221100  111122788999999999999999864  455666677777777


Q ss_pred             HHHHHHhhhc
Q 024197          261 LNAELKSQFE  270 (271)
Q Consensus       261 ~~eELrk~~e  270 (271)
                      +.++++++++
T Consensus      1302 qle~~k~qle 1311 (1930)
T KOG0161|consen 1302 QLEELKRQLE 1311 (1930)
T ss_pred             HHHHHHHHHH
Confidence            8888877765

>PRK11519 tyrosine kinase; Provisional

Probab=86.30  E-value=46  Score=34.79  Aligned_cols=147  Identities=14%  Similarity=0.239  Sum_probs=83.1

Q ss_pred             CCCCChhhhHHHHHhhHhhHHHHHHHH----HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc--hHHHHHhhh
Q 024197          108 GTSPEPRLVINYLQTLKSSEEMLKEQL----EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP--LMQARRLLL  181 (271)
Q Consensus       108 ~~~~~~~l~~~~l~~Lk~sE~~LkeQl----~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps--~~qlR~~Ll  181 (271)
                      -++++|.....-+..+  .+.=+.+++    .++.+--..+-.+|...++++.+....++++|..+.--  ..+++.   
T Consensus       234 ~~~~dP~~Aa~iaN~l--~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~---  308 (719)
T PRK11519        234 YTGEDREQIRDILNSI--TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKA---  308 (719)
T ss_pred             EEcCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---
Confidence            3577888777666555  333333333    22222334667788888888888888888888876531  111111   


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhc-----ccchhhhHHHH
Q 024197          182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE-----GETHQLSVKLA  256 (271)
Q Consensus       182 DPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lse-----gria~LE~eLA  256 (271)
                         ..-.+..++.++.+.+.+    ..+|+. +|+|+++.=+.|.++-+.|+.+.+++-..+..     -...+|+.+..
T Consensus       309 ---~l~~~~~l~~ql~~l~~~----~~~l~~-~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~  380 (719)
T PRK11519        309 ---VLDSMVNIDAQLNELTFK----EAEISK-LYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVE  380 (719)
T ss_pred             ---HHHHHHHHHHHHHHHHHH----HHHHHH-HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence               111123334444333222    233433 69999998888988888888887776544432     12334555555


Q ss_pred             HHHHHHHHHHh
Q 024197          257 LQKSLNAELKS  267 (271)
Q Consensus       257 lqK~~~eELrk  267 (271)
                      ..++.-+.|-+
T Consensus       381 ~~~~lY~~lL~  391 (719)
T PRK11519        381 SGQQVYMQLLN  391 (719)
T ss_pred             HHHHHHHHHHH
Confidence            54444444433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=86.01  E-value=16  Score=33.51  Aligned_cols=36  Identities=31%  Similarity=0.632  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc
Q 024197          130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP  172 (271)
Q Consensus       130 LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps  172 (271)
                      ||+||-++.       .=++.|-.||--+++++.+.+......
T Consensus        15 LKqQLke~q-------~E~~~K~~Eiv~Lr~ql~e~~~~l~~~   50 (202)
T PF06818_consen   15 LKQQLKESQ-------AEVNQKDSEIVSLRAQLRELRAELRNK   50 (202)
T ss_pred             HHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence            677776654       457888899999999999998876554

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=85.85  E-value=31  Score=39.08  Aligned_cols=146  Identities=17%  Similarity=0.215  Sum_probs=83.8

Q ss_pred             hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhh-HhhHHHHHHHHHHHHhHHHHH
Q 024197           66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTL-KSSEEMLKEQLEKAKKKEAAF  144 (271)
Q Consensus        66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~L-k~sE~~LkeQl~e~krRE~vl  144 (271)
                      ..+|.|.+|...+-.+..+++.+..++.-.+++...-    ...-+..-.-++.|..+ ..-+..|.+++.+++++=..+
T Consensus       402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~----~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~  477 (1293)
T KOG0996|consen  402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA----RIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGI  477 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4566677777777777777777766665554332221    01111122222233222 233455667777888887788


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh--ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 024197          145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL--DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFT  216 (271)
Q Consensus       145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~Ll--DPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFT  216 (271)
                      ..-+-.+|.++.....+++..|..++-+...|.-++.  .-+++ =+..|+..|......+++-+.+|..|+=.
T Consensus       478 ~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~-~~e~lk~~L~~~~~~~~e~~~~l~~~k~~  550 (1293)
T KOG0996|consen  478 REEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLK-KVEELKGKLLASSESLKEKKTELDDLKEE  550 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888888888777655333322211  11111 23456666666666666666666666443

>PRK09039 hypothetical protein; Validated

Probab=85.49  E-value=7.6  Score=37.33  Aligned_cols=32  Identities=31%  Similarity=0.361  Sum_probs=17.1

Q ss_pred             hHHHHhhHHH-HHhchhhhhhhHHHHHHHHHHH
Q 024197           61 TGMILSLRES-LQNCKDTLATCQLELEAAKSEI   92 (271)
Q Consensus        61 t~~il~lr~~-l~~~~~~~~~~~~~l~~a~~ei   92 (271)
                      +...|+|+.+ ...-...|+.+++.+++|+..-
T Consensus        65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r   97 (343)
T PRK09039         65 LADLLSLERQGNQDLQDSVANLRASLSAAEAER   97 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3445555432 3344556666777666655443

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=85.44  E-value=39  Score=33.12  Aligned_cols=68  Identities=16%  Similarity=0.187  Sum_probs=32.2

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcCC-----chHHHHHhhhCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197          145 IVTFAKREQEIAELKSAVRDLKAQLKP-----PLMQARRLLLDP--AIHEEFRRLKNLVEEKDKKVKELEENIAA  212 (271)
Q Consensus       145 v~rLAtKEQEiqEl~sqi~dlK~~~~p-----s~~qlR~~LlDP--AVNlef~rLr~eLee~~~kle~aq~ELsA  212 (271)
                      ...++..+.+|.+...++..++.....     ...++.++..+-  .+...+...+.++...+..++.++..|.-
T Consensus       242 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~  316 (457)
T TIGR01000       242 QQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK  316 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            444555555555555555554332211     012222222221  24455556666666666666666666543

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK03918 chromosome segregation protein; Provisional

Probab=84.81  E-value=54  Score=34.20  Aligned_cols=11  Identities=18%  Similarity=0.196  Sum_probs=4.5

Q ss_pred             hHHHHHhhHhh
Q 024197          116 VINYLQTLKSS  126 (271)
Q Consensus       116 ~~~~l~~Lk~s  126 (271)
                      +.+.+..|+..
T Consensus       590 ~~~~~~~l~~~  600 (880)
T PRK03918        590 LEERLKELEPF  600 (880)
T ss_pred             HHHHHHHhhhh
Confidence            33444444433

>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily

Probab=84.72  E-value=38  Score=32.36  Aligned_cols=195  Identities=18%  Similarity=0.233  Sum_probs=115.3

Q ss_pred             chhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHH
Q 024197           59 VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAK  138 (271)
Q Consensus        59 ~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~k  138 (271)
                      .-...+-.|.+-.++|...|..|+.-|..-..+-.+-+..|.. .+-...+.   .+..    .|+.-=.+++..|..+.
T Consensus        76 ~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~-rWtr~pS~---~~~~----~l~~~i~~~r~~L~~A~  147 (339)
T cd09238          76 ALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGT-AWTRPPSA---TLTK----NLWERLNRFRVNLEQAG  147 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCccH---HHHH----HHHHHHHHHHHHHHHHH
Confidence            3456777788888899999999999999999999888876655 33222211   1221    44555566677888888


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHh-hhChhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhcc
Q 024197          139 KKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRL-LLDPAIHEEFRRLK---NLVEEKDKKVKELEENIAAVS  214 (271)
Q Consensus       139 rRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~-LlDPAVNlef~rLr---~eLee~~~kle~aq~ELsAwk  214 (271)
                      .-...+..++..-+.-+.-+..  ..+... -|++..  .. .++|.++.++..||   ++|...+.+-....+.|...+
T Consensus       148 ~sD~~v~~k~~~~~~~l~~L~~--~~~~~~-~Ps~~~--~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~  222 (339)
T cd09238         148 DSDESLRRRIEDAMDGMLILDD--EPAAAA-APTLRA--PMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALK  222 (339)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCc--HhhHhh-CCCCCC--cccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888777777776622  333333 444211  11 22344444555555   445555555555555554433


Q ss_pred             cCCCchhHHHHHHHHHhHHH-HHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197          215 FTANSKMGKALMAKCKTLQE-ENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE  270 (271)
Q Consensus       215 FTpdS~~GKrLmaKCR~Lqe-ENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e  270 (271)
                      - .|....+ ||..-..+.. =++||++-  ..-...++..+..|.....+|+.+++
T Consensus       223 ~-~DDI~~~-ll~~~~~~e~lF~~eL~kf--~~~~~~v~~~~~~Q~~ll~~i~~~n~  275 (339)
T cd09238         223 R-NDNILAK-VMATTGSYDALFKEELKKY--DSVREAVSKNISSQDDLLSRLRALNE  275 (339)
T ss_pred             h-cCCcHHH-HHHhhhhhHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 3333333 3333222222 12367652  34457777788888888888876553

This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=84.61  E-value=47  Score=34.65  Aligned_cols=87  Identities=26%  Similarity=0.346  Sum_probs=46.5

Q ss_pred             hhhcCCCchhHH--HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc-ccCCCCCCCCChhhhHHHHHhhHhhHH
Q 024197           52 VEETAPGVATGM--ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKSSEE  128 (271)
Q Consensus        52 ~~~~~~~~~t~~--il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~-e~~i~a~~~~~~~l~~~~l~~Lk~sE~  128 (271)
                      +++++...+.--  |=-|++.+.+.+..+...+..+..|...+.-|-..+-+ ++-+ +.....-+.+.+++..|+..-.
T Consensus       101 l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~-~~~krr~~~le~e~~~Lk~en~  179 (546)
T KOG0977|consen  101 LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI-NTLKRRIKALEDELKRLKAENS  179 (546)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence            344444443322  33455555555555555555555555555555543332 1111 2223344567777888888888


Q ss_pred             HHHHHHHHHHh
Q 024197          129 MLKEQLEKAKK  139 (271)
Q Consensus       129 ~LkeQl~e~kr  139 (271)
                      .|..+|..+++
T Consensus       180 rl~~~l~~~r~  190 (546)
T KOG0977|consen  180 RLREELARARK  190 (546)
T ss_pred             hhHHHHHHHHH
Confidence            88888877665

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=84.61  E-value=32  Score=31.50  Aligned_cols=132  Identities=23%  Similarity=0.318  Sum_probs=66.1

Q ss_pred             hhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHH
Q 024197          115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKN  194 (271)
Q Consensus       115 l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~  194 (271)
                      -+..-|..|..+-.+|..+..+.++       .+-+-|...+.+...+.+||.+... ..  ..+-.=-+|+.++..||.
T Consensus         5 dL~~~v~dL~~~n~~L~~en~kL~~-------~ve~~ee~na~L~~e~~~L~~q~~s-~Q--qal~~aK~l~eEledLk~   74 (193)
T PF14662_consen    5 DLLSCVEDLQLNNQKLADENAKLQR-------SVETAEEGNAQLAEEITDLRKQLKS-LQ--QALQKAKALEEELEDLKT   74 (193)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHH
Confidence            3455677788888888887755443       3444455555555555555544221 11  011122355666666666


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhh--hhcccchhhhHHHHHHHHH
Q 024197          195 LVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQ--NEEGETHQLSVKLALQKSL  261 (271)
Q Consensus       195 eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~--lsegria~LE~eLAlqK~~  261 (271)
                      .+...+.....+..+-.-..=     --+.|.++.-+||+||..|-..  ...-++.+|-++.+..+.+
T Consensus        75 ~~~~lEE~~~~L~aq~rqlEk-----E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q  138 (193)
T PF14662_consen   75 LAKSLEEENRSLLAQARQLEK-----EQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ  138 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence            665555544444333222211     1134677777777777655321  1223445554444444333

>PRK10869 recombination and repair protein; Provisional

Probab=84.59  E-value=50  Score=33.72  Aligned_cols=84  Identities=15%  Similarity=0.261  Sum_probs=59.4

Q ss_pred             hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc----------------hhH---HHHHHHHHhHHHHHHHHhh
Q 024197          181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS----------------KMG---KALMAKCKTLQEENDEIGR  241 (271)
Q Consensus       181 lDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS----------------~~G---KrLmaKCR~LqeENEELGr  241 (271)
                      .||.+.....+|.+-....+.-...+..-+....|+|+.                +-|   .-+++....+++|.++|. 
T Consensus       259 ~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~-  337 (553)
T PRK10869        259 MDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD-  337 (553)
T ss_pred             hCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-
Confidence            488887777777777777777777777777777888852                222   457777788888888887 


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHH
Q 024197          242 QNEEGETHQLSVKLALQKSLNAELK  266 (271)
Q Consensus       242 ~lsegria~LE~eLAlqK~~~eELr  266 (271)
                       ..+.++..|+.++...++...++-
T Consensus       338 -~~e~~l~~Le~e~~~l~~~l~~~A  361 (553)
T PRK10869        338 -DQEDDLETLALAVEKHHQQALETA  361 (553)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHH
Confidence             445677788887777766655543

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=84.53  E-value=11  Score=39.16  Aligned_cols=56  Identities=23%  Similarity=0.312  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh----cccCCCc---------hhHHH---HHHHHHhHHHHHHHHhhhh
Q 024197          188 EFRRLKNLVEEKDKKVKELEENIAA----VSFTANS---------KMGKA---LMAKCKTLQEENDEIGRQN  243 (271)
Q Consensus       188 ef~rLr~eLee~~~kle~aq~ELsA----wkFTpdS---------~~GKr---LmaKCR~LqeENEELGr~l  243 (271)
                      .+..|..++.....++..+..+|..    -.|.|..         |+.+.   -.+-...|+.||++|-..+
T Consensus       511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l  582 (722)
T PF05557_consen  511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARL  582 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444555555555555543    2455542         33322   3567888999999987666

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>TIGR02231 conserved hypothetical protein

Probab=84.53  E-value=9.6  Score=37.94  Aligned_cols=102  Identities=12%  Similarity=0.095  Sum_probs=70.7

Q ss_pred             HHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHH
Q 024197           62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKE  141 (271)
Q Consensus        62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE  141 (271)
                      .-|-.|+..|+.-.+.++.+++++.++++.+.-|.+.-.  ........ ........+..+.+.-.-+.+|+.+...+-
T Consensus        71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (525)
T TIGR02231        71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIRE--GLTEPIKD-SAKRNEPDLKEWFQAFDFNGSEIERLLTED  147 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhcccccc-ccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            367889999999999999999999999999988873321  11100000 000011234456677777778888888777


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHH
Q 024197          142 AAFIVTFAKREQEIAELKSAVRDLK  166 (271)
Q Consensus       142 ~vlv~rLAtKEQEiqEl~sqi~dlK  166 (271)
                      .-+-..+...++++.++..+++.+-
T Consensus       148 ~~~~~~~~~~~~~l~~l~~~l~~l~  172 (525)
T TIGR02231       148 REAERRIRELEKQLSELQNELNALL  172 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7788888888888888888877663

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=84.11  E-value=52  Score=33.52  Aligned_cols=82  Identities=12%  Similarity=0.135  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----cCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhH--HHHHH
Q 024197          185 IHEEFRRLKNLVEEKDKKVKELEENIAAVS----FTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSV--KLALQ  258 (271)
Q Consensus       185 VNlef~rLr~eLee~~~kle~aq~ELsAwk----FTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~--eLAlq  258 (271)
                      +...+..||..-.+++.++...+..|+.++    =..=+-+....+.-...+..+.+.|.+.+..|.|---.+  ++...
T Consensus       402 i~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~  481 (569)
T PRK04778        402 LSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEA  481 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            445555666666666666666666555544    121222334466666677777777777777776543332  34444


Q ss_pred             HHHHHHHH
Q 024197          259 KSLNAELK  266 (271)
Q Consensus       259 K~~~eELr  266 (271)
                      ....+.|.
T Consensus       482 ~~~~~~L~  489 (569)
T PRK04778        482 TEDVETLE  489 (569)
T ss_pred             HHHHHHHH
Confidence            44444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=84.04  E-value=18  Score=37.92  Aligned_cols=74  Identities=16%  Similarity=0.310  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHH
Q 024197          127 EEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVK  204 (271)
Q Consensus       127 E~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle  204 (271)
                      -..|.+++...+.+..-.+.++-.+|-.|.++++++...... .|+.   --.-.+=....++..|+.+++....++.
T Consensus        31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~-~~pa---~pse~E~~Lq~E~~~L~kElE~L~~qlq  104 (617)
T PF15070_consen   31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP-EPPA---GPSEVEQQLQAEAEHLRKELESLEEQLQ  104 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-cccc---cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777888888888888888888888888887766422 2211   1111122334455566666666655544

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=83.26  E-value=36  Score=35.63  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=69.5

Q ss_pred             HHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhh
Q 024197           71 LQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAK  150 (271)
Q Consensus        71 l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAt  150 (271)
                      ++--...|..++.+|+.|..+++.++.   ..-++...  .+.....+.+       ..|+.|+.+++.++.-+..++..
T Consensus       269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~---~~~~~d~~--~ea~~~l~~~-------~~l~~ql~~l~~~~~~l~~~~~~  336 (726)
T PRK09841        269 LEFLQRQLPEVRSELDQAEEKLNVYRQ---QRDSVDLN--LEAKAVLEQI-------VNVDNQLNELTFREAEISQLYKK  336 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCCC--HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Confidence            444556777888888899888888883   33233211  1112222222       44566777777777666666655


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHH-HhhhChhHHHHHHHHHHHHHHHHHHHHHH
Q 024197          151 REQEIAELKSAVRDLKAQLKPPLMQAR-RLLLDPAIHEEFRRLKNLVEEKDKKVKEL  206 (271)
Q Consensus       151 KEQEiqEl~sqi~dlK~~~~ps~~qlR-~~LlDPAVNlef~rLr~eLee~~~kle~a  206 (271)
                      .--.++.+..+++.|+...    ..++ ++.--|..-.++.+|..+.+-.+.-+..+
T Consensus       337 ~hP~v~~l~~~~~~L~~~~----~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~l  389 (726)
T PRK09841        337 DHPTYRALLEKRQTLEQER----KRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQL  389 (726)
T ss_pred             cCchHHHHHHHHHHHHHHH----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555554332    1122 23334777777888887777776666543

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=83.09  E-value=37  Score=38.59  Aligned_cols=148  Identities=22%  Similarity=0.241  Sum_probs=76.9

Q ss_pred             HHHHHhhHhhHHHHHHHHHHHHhH---HHHHHHHHhhHHHHHHHHHHHHHHHH-HhcCCc-hHHHHHhhhChhHHHHHHH
Q 024197          117 INYLQTLKSSEEMLKEQLEKAKKK---EAAFIVTFAKREQEIAELKSAVRDLK-AQLKPP-LMQARRLLLDPAIHEEFRR  191 (271)
Q Consensus       117 ~~~l~~Lk~sE~~LkeQl~e~krR---E~vlv~rLAtKEQEiqEl~sqi~dlK-~~~~ps-~~qlR~~LlDPAVNlef~r  191 (271)
                      .-.++++...++-|+.|+.+..++   ..+=..+|-.++..|.+++.++.++- .+.... ...| +.-+|-.-+..++.
T Consensus       826 ~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~l-q~~i~~i~~e~~q~  904 (1293)
T KOG0996|consen  826 TASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKEL-QNKIDEIGGEKVQA  904 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHhhchhhHH
Confidence            345566666666677777665544   11112233334444555555555541 000000 0111 33466777788888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhh
Q 024197          192 LKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ  268 (271)
Q Consensus       192 Lr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~  268 (271)
                      =+.+++....+++.+..+++-.++  ...+.-+.++||.....+.+.--+ ..++.+..|..++--.+....|+...
T Consensus       905 qk~kv~~~~~~~~~l~~~i~k~~~--~i~~s~~~i~k~q~~l~~le~~~~-~~e~e~~~L~e~~~~~~~k~~E~~~~  978 (1293)
T KOG0996|consen  905 QKDKVEKINEQLDKLEADIAKLTV--AIKTSDRNIAKAQKKLSELEREIE-DTEKELDDLTEELKGLEEKAAELEKE  978 (1293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHH--HHhcCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            889999999999999888877754  223333355666554444333221 22344444444444444444444433

>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins

Probab=81.97  E-value=49  Score=31.68  Aligned_cols=193  Identities=14%  Similarity=0.187  Sum_probs=113.1

Q ss_pred             HHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHH
Q 024197           62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKE  141 (271)
Q Consensus        62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE  141 (271)
                      .++-.|.+-.++|...|..|+.-|..=..+-.+-+..|..+.+-...+   ..+.    ..|+.-=.+++..|..+..=.
T Consensus        78 ~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S---~~~~----~~l~~~~~~~~~~L~~A~~sD  150 (353)
T cd09236          78 ASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDS---HEAN----PKLYTQAAEYEGYLKQAGASD  150 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCc---HHHH----HHHHHHHHHHHHHHHHHHhhH
Confidence            455666666777888888888888877787777776555433321111   1122    244555566777888888889


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHH---HHHHHHHHHHHHhhhhcccCCC
Q 024197          142 AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLV---EEKDKKVKELEENIAAVSFTAN  218 (271)
Q Consensus       142 ~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eL---ee~~~kle~aq~ELsAwkFTpd  218 (271)
                      ..+..++..-+.-|.-|.....+|.... |++   +...+.|.+.-.+.+||..+   ...+.+-...-.+|..- -..+
T Consensus       151 ~~v~~k~~~~~~~l~lL~~~~~~l~~~~-Ps~---~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k-~~~D  225 (353)
T cd09236         151 ELVRRKLDEWEDLIQILTGDERDLENFV-PSS---RRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTK-ARAD  225 (353)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHhC-CCC---CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            9999999888888888877777775553 543   23334678888888888544   44444444444444221 1222


Q ss_pred             chhHHHHHHHHHhHHHH---------------HHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197          219 SKMGKALMAKCKTLQEE---------------NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF  269 (271)
Q Consensus       219 S~~GKrLmaKCR~LqeE---------------NEELGr~lsegria~LE~eLAlqK~~~eELrk~~  269 (271)
                      ...+ .||.-...+...               -+||++-  ..-...|+..+..|.....+|+.++
T Consensus       226 DI~~-~ll~~~~~~~~~~~~~~i~~~~fe~lf~~eL~kf--~~~~~~l~~~~~~Q~~ll~~i~~~n  288 (353)
T cd09236         226 DIRP-EILREAARLEREYPATEVAPAHFEDLFDKRLAKY--DKDLDAVSEEAQEQEEILQQIEVAN  288 (353)
T ss_pred             CchH-HHHHHHHhhhcccccccccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222 233322211111               0245442  2334666667777777777776554

This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=81.46  E-value=74  Score=33.34  Aligned_cols=50  Identities=24%  Similarity=0.367  Sum_probs=37.6

Q ss_pred             HHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHH
Q 024197          175 QARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQE  234 (271)
Q Consensus       175 qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~Lqe  234 (271)
                      .+-.+|.||..|+  .+|..-++....++..++.+|...+=        -|+.+.|.|..
T Consensus       384 k~~~lL~d~e~ni--~kL~~~v~~s~~rl~~L~~qWe~~R~--------pL~~e~r~lk~  433 (594)
T PF05667_consen  384 KTVELLPDAEENI--AKLQALVEASEQRLVELAQQWEKHRA--------PLIEEYRRLKE  433 (594)
T ss_pred             HHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHH
Confidence            3446789999998  89999999999999999988875542        35555555553

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=81.19  E-value=42  Score=36.30  Aligned_cols=115  Identities=21%  Similarity=0.340  Sum_probs=76.8

Q ss_pred             hHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 024197          123 LKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK  202 (271)
Q Consensus       123 Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~k  202 (271)
                      .......+++++....-=-.-+-+.|+.-.+++..++.+|++.                    ..-+..|+.+|...++.
T Consensus       587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~--------------------E~~L~eLq~eL~~~keS  646 (769)
T PF05911_consen  587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKES--------------------EQKLEELQSELESAKES  646 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHH
Confidence            3444445555665555444556677777777777777776555                    23456777778877777


Q ss_pred             HHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHh
Q 024197          203 VKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS  267 (271)
Q Consensus       203 le~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk  267 (271)
                      ...+..+|.+-+..-.+     |-.++..++.|+.+|-     .+|..|+.+|..-|...+|+-.
T Consensus       647 ~s~~E~ql~~~~e~~e~-----le~~~~~~e~E~~~l~-----~Ki~~Le~Ele~er~~~~e~~~  701 (769)
T PF05911_consen  647 NSLAETQLKAMKESYES-----LETRLKDLEAEAEELQ-----SKISSLEEELEKERALSEELEA  701 (769)
T ss_pred             HHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHhcchhhhh
Confidence            77777777777655554     6667777777888776     5667788888777777666543

The function of this family is unknown.

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=80.46  E-value=3.3  Score=41.48  Aligned_cols=175  Identities=14%  Similarity=0.166  Sum_probs=28.2

Q ss_pred             CCCchhHHHHhhHHHH-----HhchhhhhhhHHHHHHHHHHHHHHHHhh-hcccCCC-------CCCCCChhhhHHHHHh
Q 024197           56 APGVATGMILSLRESL-----QNCKDTLATCQLELEAAKSEIQKWHSSF-QNELFIP-------PGTSPEPRLVINYLQT  122 (271)
Q Consensus        56 ~~~~~t~~il~lr~~l-----~~~~~~~~~~~~~l~~a~~ei~kW~~~f-q~e~~i~-------a~~~~~~~l~~~~l~~  122 (271)
                      -++|--|.+|+|+.--     ...++.+.++...++.-+.+|....+.+ +.-+-++       +.....|..+.    .
T Consensus        60 l~dikd~s~l~l~~~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~  135 (424)
T PF03915_consen   60 LSDIKDGSVLSLNEEPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSS----A  135 (424)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCeeEEEecccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc----c
Confidence            3688888999988655     3567777888878888888887777665 3311110       11111111000    0


Q ss_pred             hHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 024197          123 LKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK  202 (271)
Q Consensus       123 Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~k  202 (271)
                      ..  -.....             ....+.-+|++.++..|.-||+.+.......         ...|..++.+       
T Consensus       136 ~~--~~~~~~-------------~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~---------~~~i~~i~~k-------  184 (424)
T PF03915_consen  136 PS--SSSSPQ-------------STSKSDLKEVQSLRRELAVLRQLYSEFQSEV---------KESISSIREK-------  184 (424)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc--cccCcC-------------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-------
Confidence            00  000000             0111117788889988888888876533222         2222333333       


Q ss_pred             HHHHHHhhhhcccCCCc-------------hhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHh
Q 024197          203 VKELEENIAAVSFTANS-------------KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS  267 (271)
Q Consensus       203 le~aq~ELsAwkFTpdS-------------~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk  267 (271)
                      +...++  .+.+...++             .....|..|..-||.=.|+|.+-+..-++-+....+....+....+.+
T Consensus       185 i~~~k~--~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~  260 (424)
T PF03915_consen  185 IKKVKS--ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASK  260 (424)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHH
Confidence            222222  222222222             233567777888888888888888777776666665555444444433

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 6e-08
 Identities = 44/317 (13%), Positives = 86/317 (27%), Gaps = 81/317 (25%)

Query: 11  DDFGGDFSANHNS---RRSGSKRSFGDIEDDEDDIFGSR--------KANSKVEETAPGV 59
           D F  +F         +   SK     I   +D + G+         K    V++     
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK----- 81

Query: 60  ATGMILS-----LRESLQN-CKDTLATCQLELEAAKSEIQKWHSSFQNELFIP-PGTSPE 112
               +L      L   ++   +       +       +  + ++   N++F     +  +
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRDRLYND--NQVFAKYNVSRLQ 135

Query: 113 PRLVI-NYLQTLKSSE-----------------EMLKEQLEKAKKKEAAFIVTFAKREQE 154
           P L +   L  L+ ++                 ++      + K     F +        
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 155 IAELKSAVRDLKAQLKPPLMQARRLLLDP--AIHEEFRRLKNLVEEKDKK----VKELEE 208
              L+  ++ L  Q+ P          +    IH     L+ L++ K  +    V  L  
Sbjct: 196 ETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN 252

Query: 209 NIAAVSFTANSKMGKALMAKCKTL--------------QEENDEIGRQNEEGETHQLSVK 254
               V    N+K   A    CK L                        +    T      
Sbjct: 253 ----VQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 255 LALQKSLN---AELKSQ 268
           L L K L+    +L  +
Sbjct: 306 L-LLKYLDCRPQDLPRE 321

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 39/242 (16%), Positives = 84/242 (34%), Gaps = 20/242 (8%)

Query: 34   DIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQ 93
             + D E+ +     A  K++      A G I  + + +   +D       E +  +  + 
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEK-VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014

Query: 94   KWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEM----LKEQLEKAKKKEAAFIVTFA 149
               ++   E                 L  LK+  E     L+ +L+K +K          
Sbjct: 1015 DLTTNLAEE-----------EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063

Query: 150  KREQEIAELKSAVRDLKAQLKPPLMQARRLLLD-PAIHEEFRRLKNLVEEKDKKVKELEE 208
            K E E ++L   + +L+AQ+     Q  +   +  A         +      KK++ELE 
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123

Query: 209  NIAAVS--FTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELK 266
            +I+ +     +          + + L EE + +  + E+      + +  L+ S   +  
Sbjct: 1124 HISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED-TLDTTATQQELRGSDYKDDD 1182

Query: 267  SQ 268
             +
Sbjct: 1183 DK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 6/151 (3%)

Query: 121  QTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKA-QLKPPLMQARRL 179
            + +    +  K  LEK    E  +     K   ++  L+ +  + K    +   +Q    
Sbjct: 935  RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994

Query: 180  LLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEI 239
             L   +H+     K + E  DK   E E+ ++ +      +    L  + + L     + 
Sbjct: 995  KLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL-----KEQNTLLKTEKEELNRRIHDQ 1049

Query: 240  GRQNEEGETHQLSVKLALQKSLNAELKSQFE 270
             ++  E    +L  +    +    + + +++
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 22/157 (14%), Positives = 49/157 (31%), Gaps = 3/157 (1%)

Query: 114 RLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL 173
              +       +  +     LEKA+++ A  +    KR+++IA L      +  +L+   
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWA 902

Query: 174 MQARRLLLDPAIHEEFRRLKNL---VEEKDKKVKELEENIAAVSFTANSKMGKALMAKCK 230
                 L      +    ++     +E  D + + LE    +   +  +++ +       
Sbjct: 903 TTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVP 962

Query: 231 TLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267
            L E  D    Q   G             +    L+ 
Sbjct: 963 ELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK 999

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.26
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	92.49
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.2
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	87.63
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	87.32
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	85.43
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	83.78
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.11
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	82.75
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.05
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	81.08

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.26  E-value=2.2  Score=40.24  Aligned_cols=34  Identities=18%  Similarity=0.171  Sum_probs=22.5

Q ss_pred             HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHH
Q 024197           64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHS   97 (271)
Q Consensus        64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~   97 (271)
                      |-.++..++..+..+...+..+.....+|+.++.
T Consensus       458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~  491 (597)
T 3oja_B          458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR  491 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4445666666666666667777777777777663

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=92.49  E-value=3.5  Score=33.12  Aligned_cols=8  Identities=13%  Similarity=0.318  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q 024197           85 LEAAKSEI   92 (271)
Q Consensus        85 l~~a~~ei   92 (271)
                      +..+..++
T Consensus        43 ~~~~~~~~   50 (284)
T 1c1g_A           43 LVSLQKKL   50 (284)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.83  E-value=7.8  Score=33.88  Aligned_cols=68  Identities=16%  Similarity=0.143  Sum_probs=36.5

Q ss_pred             HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197           63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE  135 (271)
Q Consensus        63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~  135 (271)
                      -|-.++..+...+..+.....+++.+..-|.+++..+.+.     ..+.+-.-+..+|..++.--..+...+.
T Consensus        47 ~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v-----~~~kE~~aL~kEie~~~~~i~~lE~eil  114 (256)
T 3na7_A           47 AILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI-----KSERELRSLNIEEDIAKERSNQANREIE  114 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----SSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666777777777777555331     1344444444455444444444443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.20  E-value=5.2  Score=37.71  Aligned_cols=74  Identities=16%  Similarity=0.224  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcc--cchhhhHHHHHHHHHH
Q 024197          185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEG--ETHQLSVKLALQKSLN  262 (271)
Q Consensus       185 VNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lseg--ria~LE~eLAlqK~~~  262 (271)
                      +..++..++........++...+.+.            ..++..++.|++|+++|-+.+.+-  ++.+|..+++..+...
T Consensus       507 l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~  574 (597)
T 3oja_B          507 LNKVFTHLKERQAFKLRETQARRTEA------------DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV  574 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhh------------hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444443            447888888888988888866543  4456666666777766


Q ss_pred             HHHHhhhc
Q 024197          263 AELKSQFE  270 (271)
Q Consensus       263 eELrk~~e  270 (271)
                      ++|-..++
T Consensus       575 ~~l~~~~~  582 (597)
T 3oja_B          575 KQLEAKKN  582 (597)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhc
Confidence            66655543

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=87.63  E-value=2.2  Score=36.36  Aligned_cols=47  Identities=26%  Similarity=0.417  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197          189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG  240 (271)
Q Consensus       189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG  240 (271)
                      +..|..+|.++.+-++..++|+.+.+..-+.     +=.|.+.|+.||.+|=
T Consensus        84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~-----lE~kl~kLq~EN~~LV  130 (152)
T 3a7p_A           84 IRRLKEVIALKNKNTERLNAALISGTIENNV-----LQQKLSDLKKEHSQLV  130 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence            4556677777777778888888777655444     6677888888887763

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=87.32  E-value=14  Score=32.20  Aligned_cols=156  Identities=15%  Similarity=0.181  Sum_probs=84.0

Q ss_pred             HHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHH
Q 024197           69 ESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTF  148 (271)
Q Consensus        69 ~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rL  148 (271)
                      +-+.--|.....++..+..++.|+.-+.                        .+=++.|+.|-.+|..+.+|..-|..++
T Consensus        10 ee~~ywk~~~~~~~q~~~~le~El~EFq------------------------esSrELE~ELE~eL~~~Ek~~~~L~~~~   65 (189)
T 2v71_A           10 EETAYWKELSMKYKQSFQEARDELVEFQ------------------------EGSRELEAELEAQLVQAEQRNRDLQADN   65 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555556666666665554                        3347789999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHH---HHHHHHHHHhh-hhcccCCCch--hH
Q 024197          149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK---DKKVKELEENI-AAVSFTANSK--MG  222 (271)
Q Consensus       149 AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~---~~kle~aq~EL-sAwkFTpdS~--~G  222 (271)
                      +.+..|+..+++-+...+..+....+.|..         ++..|+......   -.++++++++| .+.+-+..|.  ++
T Consensus        66 ~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~---------el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e  136 (189)
T 2v71_A           66 QRLKYEVEALKEKLEHQYAQSYKQVSVLED---------DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE  136 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence            999999999998887776654433332221         223333332222   22334444444 1111122221  11


Q ss_pred             ---HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHH
Q 024197          223 ---KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQK  259 (271)
Q Consensus       223 ---KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK  259 (271)
                         -..|-+.=.|+.|++|  |....-.+++|--++.-+|
T Consensus       137 ~kln~aiEr~alLE~El~E--Ke~l~~~~QRLkdE~rDLk  174 (189)
T 2v71_A          137 QRLNQAIERNAFLESELDE--KESLLVSVQRLKDEARDLR  174 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHHHHCCC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence               1246666677777776  4444555666655554443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=85.43  E-value=4.8  Score=42.52  Aligned_cols=20  Identities=30%  Similarity=0.401  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 024197          192 LKNLVEEKDKKVKELEENIA  211 (271)
Q Consensus       192 Lr~eLee~~~kle~aq~ELs  211 (271)
                      +..++...+.+++.++.++.
T Consensus       974 l~~e~~~le~~l~~l~~el~  993 (1184)
T 1i84_S          974 LQLEKVTADGKIKKMEDDIL  993 (1184)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=83.78  E-value=6.8  Score=41.54  Aligned_cols=84  Identities=19%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q 024197          150 KREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKC  229 (271)
Q Consensus       150 tKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKC  229 (271)
                      .+++|+.+++..+.+++....- ..++... + -....++..|+.++....++.+.+++.+.-.+        ..|-.++
T Consensus       957 ~~~~e~~~L~~~l~~le~~~~e-~~~~~~~-v-~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~--------~~L~~kv 1025 (1080)
T 2dfs_A          957 TYSTETEKLRSDVERLRMSEEE-AKNATNR-V-LSLQEEIAKLRKELHQTQTEKKTIEEWADKYK--------HETEQLV 1025 (1080)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHH-HHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence            5667777777777777654211 1111100 0 01223334444444444444444444433222        3677888


Q ss_pred             HhHHHHHHHHhhhhh
Q 024197          230 KTLQEENDEIGRQNE  244 (271)
Q Consensus       230 R~LqeENEELGr~ls  244 (271)
                      ..|..||..|-.++.
T Consensus      1026 ~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A         1026 SELKEQNTLLKTEKE 1040 (1080)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            889999988887764

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=82.75  E-value=24  Score=30.81  Aligned_cols=80  Identities=11%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             hhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHH
Q 024197          122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDK  201 (271)
Q Consensus       122 ~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~  201 (271)
                      .|..--+.++.++...+..=.-+-..+..++.+|.++...+...+....       ++    .=|-+|..|..+|+..+.
T Consensus        36 ~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~-------~v----~~~kE~~aL~kEie~~~~  104 (256)
T 3na7_A           36 KALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS-------EI----KSERELRSLNIEEDIAKE  104 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HC----SSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cc----CCHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444555666777777777777766655432       11    135678888888888888


Q ss_pred             HHHHHHHhhhh
Q 024197          202 KVKELEENIAA  212 (271)
Q Consensus       202 kle~aq~ELsA  212 (271)
                      +...+.+++..
T Consensus       105 ~i~~lE~eile  115 (256)
T 3na7_A          105 RSNQANREIEN  115 (256)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887777654

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=81.08  E-value=1.7  Score=31.34  Aligned_cols=39  Identities=26%  Similarity=0.484  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 024197          222 GKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL  265 (271)
Q Consensus       222 GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eEL  265 (271)
                      ...|..++..|..+|.+|..     +|..|+.++..+|..+.|+
T Consensus        25 ~~~le~~~~~L~~~N~~L~~-----~i~~L~~E~~~Lk~ll~e~   63 (63)
T 1ci6_A           25 QEALTGECKELEKKNEALKE-----RADSLAKEIQYLKDLIEEV   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhC
Confidence            35688899999999999995     4589999999998887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00