Citrus Sinensis ID: 024201
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 271 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5R8 | 273 | 2-Cys peroxiredoxin BAS1- | yes | no | 0.774 | 0.769 | 0.885 | 1e-109 | |
| Q6ER94 | 261 | 2-Cys peroxiredoxin BAS1, | yes | no | 0.937 | 0.973 | 0.787 | 1e-108 | |
| Q96291 | 266 | 2-Cys peroxiredoxin BAS1, | no | no | 0.752 | 0.766 | 0.887 | 1e-107 | |
| Q96468 | 210 | 2-Cys peroxiredoxin BAS1, | N/A | no | 0.767 | 0.990 | 0.876 | 1e-104 | |
| P80602 | 210 | 2-Cys peroxiredoxin BAS1, | N/A | no | 0.756 | 0.976 | 0.879 | 1e-104 | |
| O24364 | 265 | 2-Cys peroxiredoxin BAS1, | N/A | no | 0.749 | 0.766 | 0.877 | 1e-103 | |
| Q1XDL4 | 199 | Putative peroxiredoxin yc | N/A | no | 0.697 | 0.949 | 0.712 | 5e-78 | |
| P51272 | 199 | Putative peroxiredoxin yc | N/A | no | 0.697 | 0.949 | 0.712 | 7e-78 | |
| Q55624 | 200 | Putative peroxiredoxin sl | N/A | no | 0.704 | 0.955 | 0.630 | 4e-73 | |
| Q61171 | 198 | Peroxiredoxin-2 OS=Mus mu | yes | no | 0.693 | 0.949 | 0.631 | 7e-66 |
| >sp|Q9C5R8|BAS1B_ARATH 2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/210 (88%), Positives = 197/210 (93%)
Query: 62 SRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFT 121
S SR++F VKA + PLVGN APDF AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFT
Sbjct: 64 SASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFT 123
Query: 122 FVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181
FVCPTEITAFSDRY EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPL++DIT
Sbjct: 124 FVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDIT 183
Query: 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQEN 241
KSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQYVQEN
Sbjct: 184 KSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQEN 243
Query: 242 PDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
PDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct: 244 PDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 273
|
May be an antioxidant enzyme particularly in the developing shoot and photosynthesizing leaf. Involved in the detoxification of alkyl hydroperoxides with reducing equivalents provided through the thioredoxin system. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5 |
| >sp|Q6ER94|BAS1_ORYSJ 2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/264 (78%), Positives = 217/264 (82%), Gaps = 10/264 (3%)
Query: 14 AALISSNPKAFSSSSISPSQNL--TIPRSFSGLRNPLKSQVPRPVSLSRGSRSRKS---F 68
AA SS A SSSS P + P S S R P RP+ LS S F
Sbjct: 2 AACCSSLATAVSSSSAKPLAGIPPAAPHSLSLPRAP----AARPLRLSASSSRSARASSF 57
Query: 69 VVKAS-VEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTE 127
V +A V+ PLVGN APDF AEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTE
Sbjct: 58 VARAGGVDDAPLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTE 117
Query: 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187
ITAFSDRY EFEKLNTEILGVS DSVFSHLAWVQTDRKSGGLGDLKYPLI+D+TKSISKS
Sbjct: 118 ITAFSDRYDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKS 177
Query: 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCP 247
+GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDET+RTLQALQYVQ+NPDEVCP
Sbjct: 178 FGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCP 237
Query: 248 AGWKPGDKSMKPDPKLSKEYFAAI 271
AGWKPGDKSMKPDPK SKEYFAAI
Sbjct: 238 AGWKPGDKSMKPDPKGSKEYFAAI 261
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Antioxidant enzyme that reduces hydrogen peroxide in chloroplasts. Participates in a NADPH-dependent hydrogen peroxide scavenging system in chloroplasts by receiving reducing equivalents from the thioredoxin reductase NTRC. May be involved in the detoxification of alkyl hydroperoxides with reducing equivalents provided through the thioredoxin system. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q96291|BAS1A_ARATH 2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/204 (88%), Positives = 192/204 (94%)
Query: 68 FVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTE 127
F VKA + PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTE
Sbjct: 63 FAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTE 122
Query: 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187
ITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D+TKSISKS
Sbjct: 123 ITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKS 182
Query: 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCP 247
+GVLI DQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQY+QENPDEVCP
Sbjct: 183 FGVLIHDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCP 242
Query: 248 AGWKPGDKSMKPDPKLSKEYFAAI 271
AGWKPG+KSMKPDPKLSKEYF+AI
Sbjct: 243 AGWKPGEKSMKPDPKLSKEYFSAI 266
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May be an antioxidant enzyme particularly in the developing shoot and photosynthesizing leaf. Involved in the detoxification of alkyl hydroperoxides with reducing equivalents provided through the thioredoxin system. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q96468|BAS1_HORVU 2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/211 (87%), Positives = 199/211 (94%), Gaps = 3/211 (1%)
Query: 62 SRSRKSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF 120
+R+R SFV +A+ E PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF
Sbjct: 2 ARAR-SFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF 60
Query: 121 TFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180
TFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D+
Sbjct: 61 TFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDV 120
Query: 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQE 240
TKSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDETLRTLQALQYV++
Sbjct: 121 TKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLQALQYVKK 180
Query: 241 NPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
PDEVCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct: 181 -PDEVCPAGWKPGEKSMKPDPKGSKEYFAAI 210
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May be an antioxidant enzyme particularly important in the developing shoot and photosynthesizing leaf. Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P80602|BAS1_WHEAT 2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/207 (87%), Positives = 196/207 (94%), Gaps = 2/207 (0%)
Query: 66 KSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVC 124
+SFV +A+ E PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVC
Sbjct: 5 RSFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVC 64
Query: 125 PTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184
PTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D+TKSI
Sbjct: 65 PTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSI 124
Query: 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDE 244
SKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDETLRTL+ALQYV++ PDE
Sbjct: 125 SKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLRALQYVKK-PDE 183
Query: 245 VCPAGWKPGDKSMKPDPKLSKEYFAAI 271
VCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct: 184 VCPAGWKPGEKSMKPDPKGSKEYFAAI 210
|
May be an antioxidant enzyme particularly in the developing shoot and photosynthesizing leaf. Triticum aestivum (taxid: 4565) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|O24364|BAS1_SPIOL 2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/204 (87%), Positives = 189/204 (92%), Gaps = 1/204 (0%)
Query: 68 FVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTE 127
F VKA + PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTE
Sbjct: 63 FAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTE 122
Query: 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187
ITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D+TKSISKS
Sbjct: 123 ITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKS 182
Query: 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCP 247
+GVLI DQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQY NPDEVCP
Sbjct: 183 FGVLIHDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYTG-NPDEVCP 241
Query: 248 AGWKPGDKSMKPDPKLSKEYFAAI 271
AGWKPG+KSMKPDPKLSKEYF+AI
Sbjct: 242 AGWKPGEKSMKPDPKLSKEYFSAI 265
|
May be an antioxidant enzyme particularly in the developing shoot and photosynthesizing leaf. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q1XDL4|YCF42_PORYE Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 136/191 (71%), Positives = 160/191 (83%), Gaps = 2/191 (1%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
VG APDF+A AV+DQEF +KLSD + KY++LFFYPLDFTFVCPTEITAFSD+Y F
Sbjct: 10 VGQLAPDFSATAVYDQEFKTLKLSD-LKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFS 68
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
+LNTE+LGVS DS +SHLAW+QTDR+SGGLGDL YPL++D+ K IS +Y VL D G+AL
Sbjct: 69 ELNTEVLGVSVDSEYSHLAWLQTDRESGGLGDLSYPLVSDLKKEISAAYNVLNSD-GVAL 127
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID +G+IQ+STINNL GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGDK+M P
Sbjct: 128 RGLFIIDPKGIIQYSTINNLEFGRSVEETLRVLQAIQYVQSHPDEVCPANWKPGDKTMNP 187
Query: 260 DPKLSKEYFAA 270
DP SK YFAA
Sbjct: 188 DPIKSKNYFAA 198
|
Reduces peroxides. May play an important role in eliminating peroxides generated during metabolism. Porphyra yezoensis (taxid: 2788) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P51272|YCF42_PORPU Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 136/191 (71%), Positives = 162/191 (84%), Gaps = 2/191 (1%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
VG APDF+A AV+DQEF +KLSD+ KYVILFFYPLDFTFVCPTEITAFSD+Y++F
Sbjct: 10 VGQIAPDFSATAVYDQEFKTIKLSDF-KNKYVILFFYPLDFTFVCPTEITAFSDKYSDFS 68
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
+LNTEILGVS DS +SHLAW+QTDR+SGGLGDL+YPL++D+ K IS +Y VL G+AL
Sbjct: 69 ELNTEILGVSVDSEYSHLAWLQTDRESGGLGDLEYPLVSDLKKEISIAYNVL-NSGGVAL 127
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID +G+IQ+ST+NNL GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGD++M P
Sbjct: 128 RGLFIIDPKGIIQYSTVNNLEFGRSVEETLRVLQAIQYVQAHPDEVCPANWKPGDRTMNP 187
Query: 260 DPKLSKEYFAA 270
DP SK YFAA
Sbjct: 188 DPIKSKNYFAA 198
|
Reduces peroxides. May play an important role in eliminating peroxides generated during metabolism. Porphyra purpurea (taxid: 2787) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q55624|Y755_SYNY3 Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0755 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 121/192 (63%), Positives = 158/192 (82%), Gaps = 1/192 (0%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
VG APDF A A+ DQ F VKLS Y GK Y++LFFYPLDFTFVCPTEI AFSDR++EF
Sbjct: 7 VGQPAPDFTATAIVDQSFQTVKLSTYRGK-YLVLFFYPLDFTFVCPTEIIAFSDRHSEFT 65
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
L+TE++G+S DS FSHLAW+QT+RK GG+G++ YPL++D+ K IS++Y VL PD GIAL
Sbjct: 66 ALDTEVVGISVDSEFSHLAWIQTERKMGGIGNINYPLVSDLKKEISQAYNVLEPDAGIAL 125
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID+EG++Q++T+NNL+ GRSVDETLR L+A+++VQ +P+EVCP W+ GDK+M P
Sbjct: 126 RGLFIIDREGILQYATVNNLSFGRSVDETLRVLKAIRHVQSHPNEVCPVDWQEGDKTMIP 185
Query: 260 DPKLSKEYFAAI 271
DP+ +K YF +
Sbjct: 186 DPEKAKTYFETV 197
|
Reduces peroxides. May play an important role in eliminating peroxides generated during metabolism. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q61171|PRDX2_MOUSE Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 120/190 (63%), Positives = 146/190 (76%), Gaps = 2/190 (1%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+G +APDF A AV D F +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD +F
Sbjct: 8 IGKSAPDFTATAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFR 66
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
KL E+LGVS DS F+HLAW+ T RK GGLG L PL+AD+TKS+S++YGVL D+GIA
Sbjct: 67 KLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAY 126
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID +GV++ T+N+L +GRSVDE LR +QA QY E+ EVCPAGWKPG ++KP
Sbjct: 127 RGLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKP 185
Query: 260 DPKLSKEYFA 269
+ SKEYF+
Sbjct: 186 NVDDSKEYFS 195
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 271 | ||||||
| 255578581 | 266 | peroxiredoxins, prx-1, prx-2, prx-3, put | 0.981 | 1.0 | 0.819 | 1e-123 | |
| 224140038 | 269 | 2-cys peroxiredoxin [Populus trichocarpa | 0.988 | 0.996 | 0.790 | 1e-120 | |
| 224091909 | 263 | 2-cys peroxiredoxin [Populus trichocarpa | 0.970 | 1.0 | 0.774 | 1e-118 | |
| 356534530 | 258 | PREDICTED: 2-Cys peroxiredoxin BAS1-like | 0.948 | 0.996 | 0.783 | 1e-115 | |
| 225440735 | 274 | PREDICTED: 2-Cys peroxiredoxin [Vitis vi | 0.977 | 0.967 | 0.789 | 1e-115 | |
| 147789752 | 273 | hypothetical protein VITISV_025619 [Viti | 0.974 | 0.967 | 0.771 | 1e-115 | |
| 297740188 | 273 | unnamed protein product [Vitis vinifera] | 0.974 | 0.967 | 0.785 | 1e-114 | |
| 356500615 | 260 | PREDICTED: 2-Cys peroxiredoxin BAS1-like | 0.940 | 0.980 | 0.771 | 1e-114 | |
| 21912927 | 271 | thioredoxin peroxidase [Nicotiana tabacu | 0.915 | 0.915 | 0.797 | 1e-113 | |
| 388508760 | 260 | unknown [Lotus japonicus] | 0.948 | 0.988 | 0.770 | 1e-113 |
| >gi|255578581|ref|XP_002530152.1| peroxiredoxins, prx-1, prx-2, prx-3, putative [Ricinus communis] gi|223530313|gb|EEF32207.1| peroxiredoxins, prx-1, prx-2, prx-3, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/271 (81%), Positives = 239/271 (88%), Gaps = 5/271 (1%)
Query: 1 MACSAASAAATATAALISSNPKAFSSSSISPSQNLTIPRSFSGLRNPLKSQVPRPVSLSR 60
MA SAAS T + I++ K+ ++ PSQ LT SF G R PL+S+ PR +SL+R
Sbjct: 1 MAYSAAST--TGLISSIAATTKSMATPISKPSQTLTT--SFFGHRKPLQSRAPRSISLNR 56
Query: 61 GSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF 120
S SRKSFVVKAS E+P LVGN APDF AEAVFDQEFINVKLSDYIGKKYVILFFYPLDF
Sbjct: 57 VSHSRKSFVVKASSELP-LVGNKAPDFEAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF 115
Query: 121 TFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180
TFVCPTEITAFSDRY EFEK+NTE+LGVS DSVFSHLAWVQTDRKSGGLGDLKYPLI+D+
Sbjct: 116 TFVCPTEITAFSDRYAEFEKINTEVLGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDV 175
Query: 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQE 240
TKSISKSYGVLIPDQG+ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQE
Sbjct: 176 TKSISKSYGVLIPDQGVALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQE 235
Query: 241 NPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
NPDEVCPAGWKPG+KSMKPDPKLSKEYFAAI
Sbjct: 236 NPDEVCPAGWKPGEKSMKPDPKLSKEYFAAI 266
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140038|ref|XP_002323394.1| 2-cys peroxiredoxin [Populus trichocarpa] gi|118485938|gb|ABK94814.1| unknown [Populus trichocarpa] gi|222868024|gb|EEF05155.1| 2-cys peroxiredoxin [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/272 (79%), Positives = 239/272 (87%), Gaps = 4/272 (1%)
Query: 1 MACSAASAAATATAALISSNPKAFSSSSISP-SQNLTIPRSFSGLRNPLKSQVPRPVSLS 59
MACSA S T +++ ++ + S P S+N+T+P SF G R +S+VPR +SL+
Sbjct: 1 MACSATST--TLISSIAAAATATTTKSMAFPISKNITLPNSFFGTRKSFQSRVPRSISLT 58
Query: 60 RGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLD 119
RGS SR +FVVKAS E+P LVGN APDF AEAVFDQEFINVKLSDYIGKKYVILFFYPLD
Sbjct: 59 RGSHSRSTFVVKASSELP-LVGNIAPDFEAEAVFDQEFINVKLSDYIGKKYVILFFYPLD 117
Query: 120 FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179
FTFVCPTEITAFSDR+ EFE++NTE+LGVS DSVFSHLAWVQTDRKSGGLGDLKYPLI+D
Sbjct: 118 FTFVCPTEITAFSDRHEEFEQINTEVLGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISD 177
Query: 180 ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQ 239
+TKSISKSYGVLIPDQG+ALRGLFIIDKEGVIQHSTINNLAIGRSVDET RTLQALQYVQ
Sbjct: 178 VTKSISKSYGVLIPDQGVALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQ 237
Query: 240 ENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
ENPDEVCPAGWKPG+KSMKPDPKLSK+YFAAI
Sbjct: 238 ENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAI 269
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091909|ref|XP_002309395.1| 2-cys peroxiredoxin [Populus trichocarpa] gi|118482812|gb|ABK93322.1| unknown [Populus trichocarpa] gi|222855371|gb|EEE92918.1| 2-cys peroxiredoxin [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/271 (77%), Positives = 233/271 (85%), Gaps = 8/271 (2%)
Query: 1 MACSAASAAATATAALISSNPKAFSSSSISPSQNLTIPRSFSGLRNPLKSQVPRPVSLSR 60
MACSA S + ++ A A S + S+ LT+P SFSG R ++S V R +SL+R
Sbjct: 1 MACSATSTSFISSIA-------AAKSMATPLSKTLTLPNSFSGTRKSIQSPVLRSISLTR 53
Query: 61 GSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF 120
GS S KSFVVKAS E+P LVGN APDF AEAVFDQEFI VKLS+YIG KYV+LFFYPLDF
Sbjct: 54 GSHSAKSFVVKASSELP-LVGNVAPDFEAEAVFDQEFIKVKLSEYIGNKYVVLFFYPLDF 112
Query: 121 TFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180
TFVCPTEITAFSDRY EF+++NTE+LGVS DSVFSHLAWVQTDRKSGGLGDLKYPLI+D+
Sbjct: 113 TFVCPTEITAFSDRYEEFKQINTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLKYPLISDV 172
Query: 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQE 240
TKSISKSYGVLIPDQG+ALRGLFIIDKEGVIQHSTINNLAIGRSVDET RTLQALQYVQE
Sbjct: 173 TKSISKSYGVLIPDQGVALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQE 232
Query: 241 NPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
NPDEVCPAGWKPGDKSMKPDP+ SK+YFAA+
Sbjct: 233 NPDEVCPAGWKPGDKSMKPDPRQSKDYFAAL 263
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534530|ref|XP_003535806.1| PREDICTED: 2-Cys peroxiredoxin BAS1-like, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/272 (78%), Positives = 232/272 (85%), Gaps = 15/272 (5%)
Query: 1 MACSAASAAATATAALISSNPKAFSSSSISPSQNLTIPRSFSGLRNPLKSQVPRP-VSLS 59
MACSA SA+ L S+NP SP +L++P + L NPL + RP +SL+
Sbjct: 1 MACSATSAS------LFSANPTPL----FSPKSSLSLPNNSLHL-NPLPT---RPSLSLT 46
Query: 60 RGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLD 119
R S +R+SFVVKAS PLVGNTAPDF AEAVFDQEFINVKLSDYIGKKYV+LFFYPLD
Sbjct: 47 RPSHTRRSFVVKASSSELPLVGNTAPDFEAEAVFDQEFINVKLSDYIGKKYVVLFFYPLD 106
Query: 120 FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179
FTFVCPTEITAFSDR+ EFE LNTEILGVS DSVFSHLAW+QTDRKSGGLGDL YPLI+D
Sbjct: 107 FTFVCPTEITAFSDRHAEFEALNTEILGVSVDSVFSHLAWIQTDRKSGGLGDLNYPLISD 166
Query: 180 ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQ 239
+TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDET RTLQALQYVQ
Sbjct: 167 VTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQ 226
Query: 240 ENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
ENPDEVCPAGWKPG+KSMKPDPKLSK+YFAA+
Sbjct: 227 ENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAV 258
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440735|ref|XP_002280930.1| PREDICTED: 2-Cys peroxiredoxin [Vitis vinifera] gi|342160844|gb|AEL16458.1| 2-Cys peroxiredoxin [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/280 (78%), Positives = 237/280 (84%), Gaps = 15/280 (5%)
Query: 1 MACSAASAAATATAALISSNPKAFSSSSISP---------SQNLTIPRSFSGLRNPLKSQ 51
MACSA S T L+SSNP+AF S S+S Q LTIP SF+ LR P +S
Sbjct: 1 MACSAPSTPTT----LLSSNPRAFPSKSLSTVASFSKPLSPQTLTIPNSFNPLRKPFQSP 56
Query: 52 VPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYV 111
VPR SRGS SR+S VV+AS E P LVGN APDF AEAVFDQEFI V LS+YIGKKYV
Sbjct: 57 VPR-SISSRGSHSRRSLVVRASSEAP-LVGNKAPDFEAEAVFDQEFIKVTLSEYIGKKYV 114
Query: 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGD 171
ILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS DSVFSHLAWVQTDRKSGGLGD
Sbjct: 115 ILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGD 174
Query: 172 LKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231
LKYPL++D+TKSISKSY VLIPDQG+ALRGLFIIDKEG+IQH+TINNLAIGRSVDET+RT
Sbjct: 175 LKYPLVSDVTKSISKSYDVLIPDQGVALRGLFIIDKEGIIQHATINNLAIGRSVDETMRT 234
Query: 232 LQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
LQALQYVQENPDEVCPAGWKPG+KSMKPDPKLSKEYFAAI
Sbjct: 235 LQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFAAI 274
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147789752|emb|CAN67408.1| hypothetical protein VITISV_025619 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/280 (77%), Positives = 233/280 (83%), Gaps = 16/280 (5%)
Query: 1 MACSAASAAATATAALISSNPKAFSSSSISP---------SQNLTIPRSFSGLRNPLKSQ 51
MACSA S L+SSNP+AF S S+S Q LTIP SF+ LR P +S
Sbjct: 1 MACSAPSTPT----XLLSSNPRAFPSKSLSTVASFSKPLSPQTLTIPNSFNPLRKPFQSP 56
Query: 52 VPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYV 111
VPR +S S R+S VV+AS PLVGN APDF AEAVFDQEFI V LS+YIGKKYV
Sbjct: 57 VPRSISSRG-SHXRRSLVVRASEA--PLVGNKAPDFEAEAVFDQEFIKVTLSEYIGKKYV 113
Query: 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGD 171
ILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS DSVFSHLAWVQTDRKSGGLGD
Sbjct: 114 ILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGD 173
Query: 172 LKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231
LKYPL++D+TKSISKSY VLIPDQG+ALRGLFIIDKEG+IQH+TINNLAIGRSVDET+RT
Sbjct: 174 LKYPLVSDVTKSISKSYDVLIPDQGVALRGLFIIDKEGIIQHATINNLAIGRSVDETMRT 233
Query: 232 LQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
LQALQYVQENPDEVCPAGWKPG+KSMKPDPKLSKEYFAAI
Sbjct: 234 LQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFAAI 273
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740188|emb|CBI30370.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/280 (78%), Positives = 236/280 (84%), Gaps = 16/280 (5%)
Query: 1 MACSAASAAATATAALISSNPKAFSSSSISP---------SQNLTIPRSFSGLRNPLKSQ 51
MACSA S T L+SSNP+AF S S+S Q LTIP SF+ LR P +S
Sbjct: 1 MACSAPSTPTT----LLSSNPRAFPSKSLSTVASFSKPLSPQTLTIPNSFNPLRKPFQSP 56
Query: 52 VPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYV 111
VPR SRGS SR+S VV+AS PLVGN APDF AEAVFDQEFI V LS+YIGKKYV
Sbjct: 57 VPR-SISSRGSHSRRSLVVRASEA--PLVGNKAPDFEAEAVFDQEFIKVTLSEYIGKKYV 113
Query: 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGD 171
ILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS DSVFSHLAWVQTDRKSGGLGD
Sbjct: 114 ILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGD 173
Query: 172 LKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231
LKYPL++D+TKSISKSY VLIPDQG+ALRGLFIIDKEG+IQH+TINNLAIGRSVDET+RT
Sbjct: 174 LKYPLVSDVTKSISKSYDVLIPDQGVALRGLFIIDKEGIIQHATINNLAIGRSVDETMRT 233
Query: 232 LQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
LQALQYVQENPDEVCPAGWKPG+KSMKPDPKLSKEYFAAI
Sbjct: 234 LQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFAAI 273
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500615|ref|XP_003519127.1| PREDICTED: 2-Cys peroxiredoxin BAS1-like, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/276 (77%), Positives = 230/276 (83%), Gaps = 21/276 (7%)
Query: 1 MACSAASAAATATAALISSNPKAFSSSSISPSQNLTIPRSFSGLRNPLKSQ----VPRP- 55
MACSA SA+ L S+NP S S S +L NPL ++ + RP
Sbjct: 1 MACSATSAS------LFSANPTPLFSPKPSLSLHL----------NPLPTRPSPSLTRPS 44
Query: 56 VSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFF 115
+SL+R S SR+SFVVKAS PLVGNTAPDF AEAVFDQEFINVKLSDYIGKKYV+LFF
Sbjct: 45 LSLTRPSHSRRSFVVKASSSELPLVGNTAPDFEAEAVFDQEFINVKLSDYIGKKYVVLFF 104
Query: 116 YPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYP 175
YPLDFTFVCPTEITAFSDR+ EFE LNTEILGVS DSVFSHLAW+QTDRKSGGLGDL YP
Sbjct: 105 YPLDFTFVCPTEITAFSDRHAEFEALNTEILGVSVDSVFSHLAWIQTDRKSGGLGDLNYP 164
Query: 176 LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235
LI+D+TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDET RTLQAL
Sbjct: 165 LISDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQAL 224
Query: 236 QYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
QYVQENPDEVCPAGWKPG+KSMKPDPKLSK+YFAA+
Sbjct: 225 QYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAV 260
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21912927|emb|CAC84143.2| thioredoxin peroxidase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/262 (79%), Positives = 224/262 (85%), Gaps = 14/262 (5%)
Query: 20 NPKAFSSSSISP--------SQNLTIPRSFSGLRN--PLKSQVPRPVSLSRGSRSRKSFV 69
NPKA +SISP SQ L++P SF+GLRN P S+V R +S R+ FV
Sbjct: 14 NPKA---ASISPKSSFQAPISQCLSVPSSFNGLRNCKPFVSRVARSLSTRVAQSQRRRFV 70
Query: 70 VKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEIT 129
V+AS E+P LVGN APDF AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFTFVCPTEIT
Sbjct: 71 VRASSELP-LVGNQAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEIT 129
Query: 130 AFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189
AFSDRY EFEKLNTEILGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D+TKSISKSY
Sbjct: 130 AFSDRYGEFEKLNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSYN 189
Query: 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAG 249
VLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDETLRTLQALQYVQ+NPDEVCPAG
Sbjct: 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLQALQYVQDNPDEVCPAG 249
Query: 250 WKPGDKSMKPDPKLSKEYFAAI 271
WKPG+KSMKPDPK SKEYFA+I
Sbjct: 250 WKPGEKSMKPDPKGSKEYFASI 271
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388508760|gb|AFK42446.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/274 (77%), Positives = 233/274 (85%), Gaps = 17/274 (6%)
Query: 1 MACSAASAAATATAALISSNPKAFSSSSISPSQNLTIPRSFSGLRNPLKSQ---VPRPVS 57
MACSAAS + + NP S P+ +L+IP S NPL ++ +P VS
Sbjct: 1 MACSAASLFS------LKLNPTPLFSPK--PTTSLSIPNSL----NPLSTKPFSLPS-VS 47
Query: 58 LSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYP 117
L+R S SR+SF+V+A+ E+P LVGNTAPDF AEAVFDQEFI VKLS+YIGKKYVILFFYP
Sbjct: 48 LTRPSHSRRSFLVRATSELP-LVGNTAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYP 106
Query: 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLI 177
LDFTFVCPTEITAFSDR+TEFE LNTEILGVS DSVFSHLAWVQTDRKSGGLGDL YPL+
Sbjct: 107 LDFTFVCPTEITAFSDRHTEFEALNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLV 166
Query: 178 ADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237
+D+TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDET RTLQALQY
Sbjct: 167 SDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQY 226
Query: 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
VQENPDEVCPAGWKPG+KSMKPDPKLSKEYF+A+
Sbjct: 227 VQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAV 260
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 271 | ||||||
| UNIPROTKB|Q6ER94 | 261 | BAS1 "2-Cys peroxiredoxin BAS1 | 0.859 | 0.892 | 0.842 | 3.4e-100 | |
| TAIR|locus:2080707 | 266 | AT3G11630 [Arabidopsis thalian | 0.819 | 0.834 | 0.852 | 1e-98 | |
| TAIR|locus:2164265 | 273 | 2-Cys Prx B "2-cysteine peroxi | 0.774 | 0.769 | 0.885 | 1.7e-98 | |
| MGI|MGI:109486 | 198 | Prdx2 "peroxiredoxin 2" [Mus m | 0.693 | 0.949 | 0.631 | 1.3e-61 | |
| UNIPROTKB|Q9BGI3 | 199 | PRDX2 "Peroxiredoxin-2" [Bos t | 0.693 | 0.944 | 0.636 | 3.4e-61 | |
| RGD|3838 | 198 | Prdx2 "peroxiredoxin 2" [Rattu | 0.693 | 0.949 | 0.626 | 5.5e-61 | |
| UNIPROTKB|P32119 | 198 | PRDX2 "Peroxiredoxin-2" [Homo | 0.693 | 0.949 | 0.626 | 1.9e-60 | |
| UNIPROTKB|F1SDX9 | 198 | PRDX2 "Peroxiredoxin-2" [Sus s | 0.693 | 0.949 | 0.621 | 5e-60 | |
| UNIPROTKB|G1K326 | 201 | PRDX1 "Peroxiredoxin-1" [Gallu | 0.693 | 0.935 | 0.602 | 1e-59 | |
| UNIPROTKB|P0CB50 | 199 | PRDX1 "Peroxiredoxin-1" [Gallu | 0.693 | 0.944 | 0.602 | 1e-59 |
| UNIPROTKB|Q6ER94 BAS1 "2-Cys peroxiredoxin BAS1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 198/235 (84%), Positives = 208/235 (88%)
Query: 38 PRSFSGLRNPLKSQVPRPVSLSRGSRSRKSFVVKAS-VEIPPLVGNTAPDFAAEAVFDQE 96
P S S R P + S SR +R+ SFV +A V+ PLVGN APDF AEAVFDQE
Sbjct: 28 PHSLSLPRAPAARPLRLSASSSRSARA-SSFVARAGGVDDAPLVGNKAPDFDAEAVFDQE 86
Query: 97 FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156
FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS DSVFSH
Sbjct: 87 FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVFSH 146
Query: 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216
LAWVQTDRKSGGLGDLKYPLI+D+TKSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTI
Sbjct: 147 LAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTI 206
Query: 217 NNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
NNLAIGRSVDET+RTLQALQYVQ+NPDEVCPAGWKPGDKSMKPDPK SKEYFAAI
Sbjct: 207 NNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYFAAI 261
|
|
| TAIR|locus:2080707 AT3G11630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 191/224 (85%), Positives = 204/224 (91%)
Query: 48 LKSQVPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIG 107
L+S R SLS S SR+SF VKA + PLVGN APDF AEAVFDQEFI VKLSDYIG
Sbjct: 45 LRSGFARRSSLS--STSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIG 102
Query: 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSG 167
KKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSG
Sbjct: 103 KKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSG 162
Query: 168 GLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDE 227
GLGDL YPLI+D+TKSISKS+GVLI DQGIALRGLFIIDKEGVIQHSTINNL IGRSVDE
Sbjct: 163 GLGDLNYPLISDVTKSISKSFGVLIHDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDE 222
Query: 228 TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
T+RTLQALQY+QENPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct: 223 TMRTLQALQYIQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 266
|
|
| TAIR|locus:2164265 2-Cys Prx B "2-cysteine peroxiredoxin B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 186/210 (88%), Positives = 197/210 (93%)
Query: 62 SRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFT 121
S SR++F VKA + PLVGN APDF AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFT
Sbjct: 64 SASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFT 123
Query: 122 FVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181
FVCPTEITAFSDRY EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPL++DIT
Sbjct: 124 FVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDIT 183
Query: 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQEN 241
KSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQYVQEN
Sbjct: 184 KSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQEN 243
Query: 242 PDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
PDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct: 244 PDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 273
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| MGI|MGI:109486 Prdx2 "peroxiredoxin 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 120/190 (63%), Positives = 146/190 (76%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+G +APDF A AV D F +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD +F
Sbjct: 8 IGKSAPDFTATAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFR 66
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
KL E+LGVS DS F+HLAW+ T RK GGLG L PL+AD+TKS+S++YGVL D+GIA
Sbjct: 67 KLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAY 126
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID +GV++ T+N+L +GRSVDE LR +QA QY E+ EVCPAGWKPG ++KP
Sbjct: 127 RGLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKP 185
Query: 260 DPKLSKEYFA 269
+ SKEYF+
Sbjct: 186 NVDDSKEYFS 195
|
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| UNIPROTKB|Q9BGI3 PRDX2 "Peroxiredoxin-2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 121/190 (63%), Positives = 143/190 (75%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
VG AP+F A AV D F VKLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR EF
Sbjct: 9 VGKPAPEFQATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIVAFSDRAAEFH 67
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
KLN E+LGVS DS F+HLAW+ T RK GGLG L PL+AD+T+ +S YGVL D+GIA
Sbjct: 68 KLNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEGIAY 127
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLF+ID +GV++ TIN+L +GRSVDE LR +QA QY E+ EVCPAGW PG ++KP
Sbjct: 128 RGLFVIDGKGVLRQVTINDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWTPGSDTIKP 186
Query: 260 DPKLSKEYFA 269
+ SKEYF+
Sbjct: 187 NVDDSKEYFS 196
|
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| RGD|3838 Prdx2 "peroxiredoxin 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 119/190 (62%), Positives = 144/190 (75%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+G APDF AV D F +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD +F
Sbjct: 8 IGKPAPDFTGTAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFR 66
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
KL E+LGVS DS F+HLAW+ T RK GGLG L PL+AD+TKS+S++YGVL D+GIA
Sbjct: 67 KLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAY 126
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID +GV++ T+N+L +GRSVDE LR +QA QY E+ EVCPAGWKPG ++KP
Sbjct: 127 RGLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKP 185
Query: 260 DPKLSKEYFA 269
+ SKEYF+
Sbjct: 186 NVDDSKEYFS 195
|
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| UNIPROTKB|P32119 PRDX2 "Peroxiredoxin-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 119/190 (62%), Positives = 144/190 (75%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+G APDF A AV D F VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R +F
Sbjct: 8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFR 66
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
KL E+LGVS DS F+HLAW+ T RK GGLG L PL+AD+T+ +S+ YGVL D+GIA
Sbjct: 67 KLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAY 126
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID +GV++ T+N+L +GRSVDE LR +QA QY E+ EVCPAGWKPG ++KP
Sbjct: 127 RGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKP 185
Query: 260 DPKLSKEYFA 269
+ SKEYF+
Sbjct: 186 NVDDSKEYFS 195
|
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| UNIPROTKB|F1SDX9 PRDX2 "Peroxiredoxin-2" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 118/190 (62%), Positives = 145/190 (76%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+G AP+F A AV + F VKLSDY GK Y++LFFYPLDFTFVCPTEI AFSDR EF
Sbjct: 8 IGKPAPEFQATAVVNGAFKEVKLSDYKGK-YLVLFFYPLDFTFVCPTEIIAFSDRAEEFH 66
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
+L E+LGVS DS F+HLAW+ T RK GGLG LK PL+AD+T+++S YGVL D+GIA
Sbjct: 67 QLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAY 126
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID +GV++ T+N+L +GRSVDE LR +QA QY E+ EVCPAGWKPG ++KP
Sbjct: 127 RGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKP 185
Query: 260 DPKLSKEYFA 269
+ SKEYF+
Sbjct: 186 NVDDSKEYFS 195
|
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| UNIPROTKB|G1K326 PRDX1 "Peroxiredoxin-1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 115/191 (60%), Positives = 147/191 (76%)
Query: 80 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
+G APDF A AV D +F ++KLSDY GK YV+ FFYPLDFTFVCPTEI A+SDR EF
Sbjct: 10 IGKPAPDFTATAVMPDGQFKDIKLSDYRGK-YVVFFFYPLDFTFVCPTEIIAYSDRADEF 68
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
+K+N EI+G S DS F HLAW+ T +K GGLG +K PL++D + I+K YGVL D+GIA
Sbjct: 69 KKINCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIA 128
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMK 258
RGLFIID++G+++ TIN+L +GRSVDETLR +QA Q+ ++ EVCPAGWKPG ++K
Sbjct: 129 YRGLFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIK 187
Query: 259 PDPKLSKEYFA 269
PD + SKEYF+
Sbjct: 188 PDVQKSKEYFS 198
|
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| UNIPROTKB|P0CB50 PRDX1 "Peroxiredoxin-1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 115/191 (60%), Positives = 147/191 (76%)
Query: 80 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
+G APDF A AV D +F ++KLSDY GK YV+ FFYPLDFTFVCPTEI A+SDR EF
Sbjct: 8 IGKPAPDFTATAVMPDGQFKDIKLSDYRGK-YVVFFFYPLDFTFVCPTEIIAYSDRADEF 66
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
+K+N EI+G S DS F HLAW+ T +K GGLG +K PL++D + I+K YGVL D+GIA
Sbjct: 67 KKINCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIA 126
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMK 258
RGLFIID++G+++ TIN+L +GRSVDETLR +QA Q+ ++ EVCPAGWKPG ++K
Sbjct: 127 YRGLFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIK 185
Query: 259 PDPKLSKEYFA 269
PD + SKEYF+
Sbjct: 186 PDVQKSKEYFS 196
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P35704 | PRDX2_RAT | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6263 | 0.6937 | 0.9494 | yes | no |
| O74887 | TSA1_SCHPO | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5210 | 0.6863 | 0.9687 | yes | no |
| P32119 | PRDX2_HUMAN | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6263 | 0.6937 | 0.9494 | yes | no |
| Q1XDL4 | YCF42_PORYE | 1, ., 1, 1, ., 1, ., 1, 5 | 0.7120 | 0.6974 | 0.9497 | N/A | no |
| O24364 | BAS1_SPIOL | 1, ., 1, 1, ., 1, ., 1, 5 | 0.8774 | 0.7490 | 0.7660 | N/A | no |
| Q96468 | BAS1_HORVU | 1, ., 1, 1, ., 1, ., 1, 5 | 0.8767 | 0.7675 | 0.9904 | N/A | no |
| P0CB50 | PRDX1_CHICK | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5989 | 0.6974 | 0.9497 | yes | no |
| O34564 | YKUU_BACSU | No assigned EC number | 0.5690 | 0.6420 | 0.9666 | yes | no |
| P34760 | TSA1_YEAST | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5235 | 0.6974 | 0.9642 | yes | no |
| Q555L5 | PRDX4_DICDI | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5585 | 0.6863 | 0.7181 | yes | no |
| Q9BGI3 | PRDX2_BOVIN | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6368 | 0.6937 | 0.9447 | yes | no |
| Q9C5R8 | BAS1B_ARATH | 1, ., 1, 1, ., 1, ., 1, 5 | 0.8857 | 0.7749 | 0.7692 | yes | no |
| Q6ER94 | BAS1_ORYSJ | 1, ., 1, 1, ., 1, ., 1, 5 | 0.7878 | 0.9372 | 0.9731 | yes | no |
| Q8K3U7 | PRDX2_CRIGR | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6210 | 0.6937 | 0.9494 | yes | no |
| Q61171 | PRDX2_MOUSE | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6315 | 0.6937 | 0.9494 | yes | no |
| Q5REY3 | PRDX3_PONAB | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5373 | 0.7785 | 0.8242 | yes | no |
| P51272 | YCF42_PORPU | 1, ., 1, 1, ., 1, ., 1, 5 | 0.7120 | 0.6974 | 0.9497 | N/A | no |
| P80602 | BAS1_WHEAT | 1, ., 1, 1, ., 1, ., 1, 5 | 0.8792 | 0.7564 | 0.9761 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.11.1.15 | 0.979 |
| 3rd Layer | 1.11.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00160660 | SubName- Full=Putative uncharacterized protein; (269 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | PtrcPrxIIC | SubName- Full=Putative uncharacterized protein; (162 aa) | • | • | 0.713 | ||||||
 | PtrcPrxIIB | SubName- Full=Putative uncharacterized protein; (162 aa) | • | • | 0.713 | ||||||
 | PtrTrxh7 | SubName- Full=Putative uncharacterized protein; (114 aa) | • | 0.698 | |||||||
 | PtrTrxh1 | SubName- Full=Putative uncharacterized protein; (116 aa) | • | 0.694 | |||||||
 | PtrTrxh4 | SubName- Full=Putative uncharacterized protein; (117 aa) | • | 0.689 | |||||||
 | PtrTrxh2 | thioredoxin h (131 aa) | • | 0.684 | |||||||
 | PtrcTrxf | SubName- Full=Putative uncharacterized protein; (188 aa) | • | • | 0.682 | ||||||
 | PtrTrxh6 | SubName- Full=Putative uncharacterized protein; (105 aa) | • | 0.681 | |||||||
 | PtrTrxh5 | SubName- Full=Putative uncharacterized protein; (140 aa) | • | 0.681 | |||||||
 | PtrTrxh3 | SubName- Full=Putative uncharacterized protein; (140 aa) | • | 0.681 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 271 | |||
| cd03015 | 173 | cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, | 1e-115 | |
| COG0450 | 194 | COG0450, AhpC, Peroxiredoxin [Posttranslational mo | 1e-101 | |
| PTZ00253 | 199 | PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi | 1e-77 | |
| TIGR03137 | 187 | TIGR03137, AhpC, peroxiredoxin | 1e-66 | |
| PTZ00137 | 261 | PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision | 2e-64 | |
| PRK15000 | 200 | PRK15000, PRK15000, peroxidase; Provisional | 6e-60 | |
| cd02971 | 140 | cd02971, PRX_family, Peroxiredoxin (PRX) family; c | 5e-58 | |
| cd03016 | 203 | cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c | 5e-53 | |
| PRK10382 | 187 | PRK10382, PRK10382, alkyl hydroperoxide reductase | 3e-50 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 2e-49 | |
| PRK13189 | 222 | PRK13189, PRK13189, peroxiredoxin; Provisional | 1e-48 | |
| PRK13190 | 202 | PRK13190, PRK13190, putative peroxiredoxin; Provis | 5e-40 | |
| COG1225 | 157 | COG1225, Bcp, Peroxiredoxin [Posttranslational mod | 2e-37 | |
| cd03018 | 149 | cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family | 1e-36 | |
| PRK13191 | 215 | PRK13191, PRK13191, putative peroxiredoxin; Provis | 3e-35 | |
| cd03017 | 140 | cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact | 3e-32 | |
| PRK13599 | 215 | PRK13599, PRK13599, putative peroxiredoxin; Provis | 4e-29 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 2e-17 | |
| cd03014 | 143 | cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, | 4e-17 | |
| PRK09437 | 154 | PRK09437, bcp, thioredoxin-dependent thiol peroxid | 4e-13 | |
| COG2077 | 158 | COG2077, Tpx, Peroxiredoxin [Posttranslational mod | 5e-12 | |
| PRK00522 | 167 | PRK00522, tpx, lipid hydroperoxide peroxidase; Pro | 1e-10 | |
| pfam10417 | 40 | pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys | 3e-08 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 2e-06 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 5e-06 | |
| cd02970 | 149 | cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 fam | 1e-05 |
| >gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = e-115
Identities = 117/175 (66%), Positives = 138/175 (78%), Gaps = 3/175 (1%)
Query: 80 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
VG APDF A AV + EF + LSDY GK +V+LFFYPLDFTFVCPTEI AFSDRY EF
Sbjct: 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGK-WVVLFFYPLDFTFVCPTEIIAFSDRYEEF 59
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
+KLN E+LGVSTDS FSHLAW T RK GGLG + +PL+AD K IS+ YGVL ++G+A
Sbjct: 60 KKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVA 119
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 253
LRG FIID EG+I+H T+N+L +GRSVDETLR L ALQ+V+E+ EVCPA WKPG
Sbjct: 120 LRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEH-GEVCPANWKPG 173
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173 |
| >gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = e-101
Identities = 112/195 (57%), Positives = 143/195 (73%), Gaps = 4/195 (2%)
Query: 77 PPLVGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY 135
L+G APDF A AV + F + LSDY GK +V+LFFYP DFTFVCPTEI AF+ RY
Sbjct: 2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYYGK-WVVLFFYPADFTFVCPTEIIAFAKRY 60
Query: 136 TEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ 195
EF+K E++GVSTDSVFSH AW T R++GG+G +K+P+IAD I+++YGVL P++
Sbjct: 61 EEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE 120
Query: 196 GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDK 255
G+ALRG FIID +GVI+H +N L IGR+VDE LR + ALQ+V ++ EVCPA WKPGDK
Sbjct: 121 GLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKH-GEVCPANWKPGDK 179
Query: 256 SMKPDPKLSKEYFAA 270
++KP P L EY
Sbjct: 180 TIKPSPDL-GEYLKE 193
|
Length = 194 |
| >gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (595), Expect = 1e-77
Identities = 100/188 (53%), Positives = 134/188 (71%), Gaps = 3/188 (1%)
Query: 84 APDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN 142
AP F A+ + F + LS Y GK +V+LFFYPLDFTFVCPTEI FSD F +LN
Sbjct: 12 APSFEEVALMPNGSFKKISLSSYKGK-WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN 70
Query: 143 TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGL 202
E+L S DS ++HL W +RK GGLG + P++AD TKSI++SYGVL +QG+A RGL
Sbjct: 71 CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGL 130
Query: 203 FIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPK 262
FIID +G+++ T+N++ +GR+V+E LR L+A Q+V+++ EVCPA WK GD +MKPDP
Sbjct: 131 FIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKH-GEVCPANWKKGDPTMKPDPN 189
Query: 263 LSKEYFAA 270
SKE F +
Sbjct: 190 KSKEGFFS 197
|
Length = 199 |
| >gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 1e-66
Identities = 82/182 (45%), Positives = 112/182 (61%), Gaps = 4/182 (2%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
L+ F A A + EF+ V D GK + + FFYP DFTFVCPTE+ +D Y E
Sbjct: 2 SLINTEIKPFKATAYHNGEFVEVTDEDVKGK-WSVFFFYPADFTFVCPTELEDLADNYAE 60
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
+KL E+ VSTD+ F H AW T S +G + YP++ D T +++++GVLI + G+
Sbjct: 61 LKKLGVEVYSVSTDTHFVHKAWHDT---SEAIGKITYPMLGDPTGVLTRNFGVLIEEAGL 117
Query: 198 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSM 257
A RG F+ID EGVIQ I++ IGR E LR ++A QYV +P EVCPA WK G +++
Sbjct: 118 ADRGTFVIDPEGVIQAVEIHDNGIGRDASELLRKIKAAQYVAAHPGEVCPAKWKEGAETL 177
Query: 258 KP 259
KP
Sbjct: 178 KP 179
|
This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187 |
| >gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (514), Expect = 2e-64
Identities = 91/220 (41%), Positives = 133/220 (60%), Gaps = 10/220 (4%)
Query: 57 SLSRGSRSRKSFVVKA--------SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGK 108
S+ R S + V+ + LVG P F A+ + + + SDY
Sbjct: 39 SVDRISSLKSVNGVRNYSTSEGLCNTVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKD 98
Query: 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGG 168
Y +L FYPLDFTFVCP+E+ FS+R EFE+ ++LGVS DS FSH AW + D + GG
Sbjct: 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGG 158
Query: 169 LGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDET 228
+ LK+PL +DI++ +SKS+G L+ D+G + R ++DK GV++H + +L +GRSVDET
Sbjct: 159 VSPLKFPLFSDISREVSKSFG-LLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDET 217
Query: 229 LRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYF 268
LR A+Q+ ++ VCP WK GD++MKPD + K+Y
Sbjct: 218 LRLFDAVQFAEKT-GNVCPVNWKQGDQAMKPDSQSVKQYL 256
|
Length = 261 |
| >gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (478), Expect = 6e-60
Identities = 85/192 (44%), Positives = 121/192 (63%), Gaps = 3/192 (1%)
Query: 79 LVGNTAPDFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
LV APDF A AV I + K +LFF+P+DFTFVCP+E+ AF RY
Sbjct: 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYE 62
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
EF+K E++GVS DS F H AW T GG+G +KY ++AD+ + I K+YG+ PD+G
Sbjct: 63 EFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEG 122
Query: 197 IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 256
+ALRG F+ID G+++H +N+L +GR++DE LR + ALQ+ +E+ +VCPA W+ G +
Sbjct: 123 VALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEH-GDVCPAQWEKGKEG 181
Query: 257 MKPDPKLSKEYF 268
M P +Y
Sbjct: 182 MNASPDGVAKYL 193
|
Length = 200 |
| >gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 5e-58
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 13/150 (8%)
Query: 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN 142
APDF + V LSD+ K+V+LFFYP DFT VC TE+ AF D EF K
Sbjct: 1 KAPDFTL---PATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG 56
Query: 143 TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ---GIAL 199
E+LGVS DS FSH AW + G L +PL++D +K+YGVLI G+A
Sbjct: 57 AEVLGVSVDSPFSHKAWAEK------EGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAA 110
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETL 229
R FIID +G I++ + L GR+ +E L
Sbjct: 111 RATFIIDPDGKIRYVEVEPLPTGRNAEELL 140
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140 |
| >gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 5e-53
Identities = 72/188 (38%), Positives = 108/188 (57%), Gaps = 9/188 (4%)
Query: 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK 140
G+TAP+F A+ +K DY+G + ILF +P DFT VC TE+ AF+ EF+K
Sbjct: 2 GDTAPNFEADTTHG----PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK 57
Query: 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL- 199
N +++G+S DSV SH+ W++ D + ++ +P+IAD + ++K G++ PD G L
Sbjct: 58 RNVKLIGLSVDSVESHIKWIE-DIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLT 116
Query: 200 -RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMK 258
R +FIID + I+ GR+ DE LR + ALQ ++ PA WKPGD +
Sbjct: 117 VRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHK-VATPANWKPGDDVIV 175
Query: 259 PDPKLSKE 266
P P +S E
Sbjct: 176 P-PSVSDE 182
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203 |
| >gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 3e-50
Identities = 69/181 (38%), Positives = 107/181 (59%), Gaps = 4/181 (2%)
Query: 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
L+ F +A + EFI V D G+ + + FFYP DFTFVCPTE+ +D Y E
Sbjct: 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEEL 61
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
+KL ++ VSTD+ F+H AW + S + +KY +I D T ++++++ + D+G+A
Sbjct: 62 QKLGVDVYSVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLA 118
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMK 258
R F++D +G+IQ + IGR + LR ++A QYV +P EVCPA WK G+ ++
Sbjct: 119 DRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLA 178
Query: 259 P 259
P
Sbjct: 179 P 179
|
Length = 187 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 2e-49
Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 11/135 (8%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
VG+ APDF D + V LSDY GK +V+LFFYP DFT VC TE+ A +D Y EF+
Sbjct: 1 VGDKAPDFELP---DLDGKEVSLSDYKGK-WVVLFFYPKDFTPVCTTELPALADLYEEFK 56
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
KL E+LGVS DS SH + + L +PL++D ++K+YGVL ++G+AL
Sbjct: 57 KLGVEVLGVSVDSPESHKKFAEKL-------GLPFPLLSDPDGEVAKAYGVLNEEEGLAL 109
Query: 200 RGLFIIDKEGVIQHS 214
R F+ID +G I++
Sbjct: 110 RTTFVIDPDGKIRYI 124
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 1e-48
Identities = 70/178 (39%), Positives = 106/178 (59%), Gaps = 7/178 (3%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
PL+G+ P+F + +KL D K+ +LF +P DFT VC TE AF RY E
Sbjct: 9 PLIGDKFPEFEVKTTHGP----IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDE 64
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG- 196
F +LNTE++G+S D VFSH+ WV+ ++ G+ ++++P+IAD I+K G++ P +G
Sbjct: 65 FRELNTELIGLSIDQVFSHIKWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGT 123
Query: 197 IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGD 254
+R +FIID +G+I+ +GR++DE LR ++ALQ E PA W P D
Sbjct: 124 NTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEK-GVATPANWPPND 180
|
Length = 222 |
| >gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 5e-40
Identities = 70/185 (37%), Positives = 108/185 (58%), Gaps = 7/185 (3%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
P +G APDF + LS Y GK +V+LF +P DFT VC TE AFS RY
Sbjct: 1 PVKLGQKAPDFTVNTTKGP----IDLSKYKGK-WVLLFSHPADFTPVCTTEFIAFSRRYE 55
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
+F+KL E++G+S DS++SH+AW++ + G+ + +P+IADI K +++ Y ++ + G
Sbjct: 56 DFKKLGVELVGLSVDSIYSHIAWLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSG 114
Query: 197 IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 256
+RG+FIID +++ GR++DE +R +ALQ V PA W+PG +
Sbjct: 115 ATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ-VNWKRKVATPANWQPGQEG 173
Query: 257 MKPDP 261
+ P P
Sbjct: 174 IVPAP 178
|
Length = 202 |
| >gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-37
Identities = 60/166 (36%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
VG+ APDF DQ+ V LSD GK V+L+FYP DFT C TE F D
Sbjct: 3 MLKVGDKAPDFELP---DQDGETVSLSDLRGKP-VVLYFYPKDFTPGCTTEACDFRDLLE 58
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
EFEKL +LG+S DS SH + + K G L +PL++D ++++YGV +
Sbjct: 59 EFEKLGAVVLGISPDSPKSHKKFAE---KHG----LTFPLLSDEDGEVAEAYGVWGEKKM 111
Query: 197 I------ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236
R F+ID +G I++ G DE L L+ L
Sbjct: 112 YGKEYMGIERSTFVIDPDGKIRYVWRKVKVKG-HADEVLAALKKLA 156
|
Length = 157 |
| >gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-36
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 15/158 (9%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
VG+ APDF QE V+LS++ G+K V+L F+PL FT VC E+ A D
Sbjct: 1 LEVGDKAPDFELPDQNGQE---VRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLEL 57
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD--ITKSISKSYGVLIPDQ 195
FE E+LG+S DS FS AW + ++G L +PL++D ++K+YGV D
Sbjct: 58 FEAAGAEVLGISVDSPFSLRAWAE---ENG----LTFPLLSDFWPHGEVAKAYGVFDEDL 110
Query: 196 GIALRGLFIIDKEGVIQHSTINNLAIGRS---VDETLR 230
G+A R +F+ID++G+I+++ +++ R DE L
Sbjct: 111 GVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149 |
| >gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-35
Identities = 68/194 (35%), Positives = 110/194 (56%), Gaps = 11/194 (5%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
PL+G P+ +KL D ++ +LF +P DFT VC TE +F+ +Y E
Sbjct: 7 PLIGEKFPEMEVITTHG----KIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEE 62
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
F+KLNTE++G+S DS SH+ WV K+ + ++ +P+IAD +++K G++ +
Sbjct: 63 FKKLNTELIGLSVDSNISHIEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESST 121
Query: 198 A-LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKP---- 252
A +R +FI+D +G ++ + IGR++DE LR ++ALQ V + V PA W
Sbjct: 122 ATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLV-DKAGVVTPANWPNNELI 180
Query: 253 GDKSMKPDPKLSKE 266
GDK + P P+ K+
Sbjct: 181 GDKVINPAPRTIKD 194
|
Length = 215 |
| >gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-32
Identities = 54/150 (36%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNT 143
APDF DQ+ V LSD GK V+L+FYP D T C E F D Y EF+ L
Sbjct: 3 APDFTLP---DQDGETVSLSDLRGKP-VVLYFYPKDDTPGCTKEACDFRDLYEEFKALGA 58
Query: 144 EILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ---GIALR 200
++GVS DSV SH + + K G L +PL++D ++K+YGV + R
Sbjct: 59 VVIGVSPDSVESHAKFAE---KYG----LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIER 111
Query: 201 GLFIIDKEGVIQHSTINNLAIGRSVDETLR 230
F+ID +G I G +E L
Sbjct: 112 STFLIDPDGKIVKVWRKVKPKG-HAEEVLE 140
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140 |
| >gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-29
Identities = 54/134 (40%), Positives = 85/134 (63%), Gaps = 3/134 (2%)
Query: 104 DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163
DY GK + +LF +P DFT VC TE F+ + +F++LNTE++G+S D VFSH+ WV+
Sbjct: 25 DYAGK-WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWI 83
Query: 164 RKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIIDKEGVIQHSTINNLAIG 222
+ + + + +P+IAD +S G++ P +G +R +FI+D +G I+ +G
Sbjct: 84 KDNTNI-AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVG 142
Query: 223 RSVDETLRTLQALQ 236
R+VDE LR L+ALQ
Sbjct: 143 RNVDEILRALKALQ 156
|
Length = 215 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-17
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
G+ APDF V + V LSD+ GKK V+ F+P F C E ++
Sbjct: 1 AGDKAPDFTLPDV-ALDGKTVSLSDFKGKKVVL-NFWPGAFCPTCSAEHPYLEKLSKLYK 58
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
+++ V+ + + + LKYP++AD + +K+YG+ D G+
Sbjct: 59 AKGVDVVAVNASND----PFFVMNFW--AKEGLKYPVLADRDGAFTKAYGLTE-DAGLRT 111
Query: 200 RGLFIIDKEGVIQH 213
F+ID++G + +
Sbjct: 112 PRYFLIDEDGKVVY 125
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
| >gnl|CDD|239312 cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 4e-17
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
VG+ APDF + + V L+D+ GK VI F +D T VC T+ F+ + +
Sbjct: 2 VGDKAPDFT---LVTSDLSEVSLADFAGKVKVISVFPSID-TPVCATQTKRFNKEAAKLD 57
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
NT +L +S D F+ W + G+ ++ L S K+YGVLI D G+
Sbjct: 58 --NTVVLTISADLPFAQKRWCGAE----GVDNVT-TLSDFRDHSFGKAYGVLIKDLGLLA 110
Query: 200 RGLFIIDKEGVIQHSTINN 218
R +F+ID+ G + + +
Sbjct: 111 RAVFVIDENGKVIYVELVP 129
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs. Length = 143 |
| >gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 4e-13
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
G+ AP F+ + DQ+ V L+D+ G++ V+++FYP T C + D E +
Sbjct: 6 AGDIAPKFS---LPDQDGEQVSLTDFQGQR-VLVYFYPKAMTPGCTVQACGLRDNMDELK 61
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ---- 195
K +LG+STD + + + L + L++D +++ +GV +
Sbjct: 62 KAGVVVLGISTDKPEKLSRFAEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGK 114
Query: 196 ---GIALRGLFIIDKEGVIQH 213
GI R F+ID +G I+H
Sbjct: 115 TYDGIH-RISFLIDADGKIEH 134
|
Length = 154 |
| >gnl|CDD|224988 COG2077, Tpx, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 5e-12
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
P VG+ APDF D +V L+D+ GKK VI F +D T VC T++ F++
Sbjct: 17 EPQVGDKAPDFTLVGK-DLN--DVSLADFAGKKKVISVFPSID-TPVCATQVRKFNEEAA 72
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLI---P 193
+ NT +L +S D F+ + + G+ ++ L ++ ++YGVLI P
Sbjct: 73 KLG--NTVVLCISMDLPFAQKRFCGAE----GIENVI-TLSDFRDRAFGENYGVLINEGP 125
Query: 194 DQGIALRGLFIIDKEGVIQHSTINN 218
G+ R +F++D+ G + +S +
Sbjct: 126 LAGLLARAVFVLDENGKVTYSELVP 150
|
Length = 158 |
| >gnl|CDD|179055 PRK00522, tpx, lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
P VG+ APDF + + +V L+D+ GK+ V+ F +D T VC T + F+ E
Sbjct: 18 PQVGDKAPDFT---LVANDLSDVSLADFAGKRKVLNIFPSID-TGVCATSVRKFNQEAAE 73
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLI---PD 194
+ NT +L +S D F+ + + GL ++ L S K+YGV I P
Sbjct: 74 LD--NTVVLCISADLPFAQKRFCGAE----GLENVI-TLSDFRDHSFGKAYGVAIAEGPL 126
Query: 195 QGIALRGLFIIDKEGVIQHS 214
+G+ R +F++D+ + +S
Sbjct: 127 KGLLARAVFVLDENNKVVYS 146
|
Length = 167 |
| >gnl|CDD|220741 pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys peroxiredoxin | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-08
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 234 ALQYVQENPDEVCPAGWKPGDKSMKPDPK----LSKEYF 268
ALQ+ ++ V PA WKPGDK + P P K Y
Sbjct: 1 ALQFTDKHG-VVTPANWKPGDKVIVPPPPTEEEAVKRYL 38
|
This is the C-terminal domain of 1-Cys peroxiredoxin (1-cysPrx), a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine, upstream of this domain; and glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulfide to the sulfhydryl and consequent activation of the enzyme. The domain is associated with family AhpC-TSA, pfam00578, which carries the catalytic cysteine. Length = 40 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFV--CPTEITAFSDRYTE 137
VG AP+F + + + I +L D GK V L F+ T+ C E+ ++ Y +
Sbjct: 37 VGKEAPNFVLTDL-EGKKI--ELKDLKGKG-VFLNFWG---TWCKPCEKEMPYMNELYPK 89
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
+++ EI+ V+ D + LA V+ G L +P+ D + + +YGV
Sbjct: 90 YKEKGVEIIAVNVDE--TELA-VKNFVNRYG---LTFPVAIDKGRQVIDAYGV------G 137
Query: 198 ALRGLFIIDKEGVIQ 212
L F+IDK+G +
Sbjct: 138 PLPTTFLIDKDGKVV 152
|
Length = 173 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 86 DFAAEAVFDQEFINVKLSDYIGKKYVILFFY----PLDFTFVCPTEITAFSDRYTEFEKL 141
DF+ + + V LSD GK ++ F+ P C E+ E++
Sbjct: 1 DFSLPDLDGKP---VSLSDLKGKVVLVNFWASWCPP------CRAEMPELEALAKEYKDD 51
Query: 142 NTEILGVSTDSVFSH--LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL-IPDQGIA 198
E++GV+ D A+++ + +P++ D ++K+YGV +P
Sbjct: 52 GVEVVGVNVDDDDPAAVKAFLKKY-------GITFPVLLDPDGELAKAYGVRGLP----- 99
Query: 199 LRGLFIIDKEGVIQHS 214
F+ID++G I+
Sbjct: 100 --TTFLIDRDGRIRAR 113
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|239268 cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 39/156 (25%)
Query: 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCP---TEITAFSDRYTEFE 139
TAPDF + D V LS +G+ V++ FY F CP + A S E +
Sbjct: 1 TAPDFE---LPDAGGETVTLSALLGEGPVVVVFYR---GFGCPFCREYLRALSKLLPELD 54
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLI----PDQ 195
L E++ V +S + L +P+ AD + + ++ G++ +
Sbjct: 55 ALGVELVAVGPES-------PEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPWSNT 107
Query: 196 GIALR-------------------GLFIIDKEGVIQ 212
AL G+F+I +G I
Sbjct: 108 PRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTIL 143
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. Length = 149 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 271 | |||
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 100.0 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 100.0 | |
| PRK15000 | 200 | peroxidase; Provisional | 100.0 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 100.0 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 100.0 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 100.0 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 100.0 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 100.0 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 100.0 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 100.0 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 100.0 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 100.0 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 100.0 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.98 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.96 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.95 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.95 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.95 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.95 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.95 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.95 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.94 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.94 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.94 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.93 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.92 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.91 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.9 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.9 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.9 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.89 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.89 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.89 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.89 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.89 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.89 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.87 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.86 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.86 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.86 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.85 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.84 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.83 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.82 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.81 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.8 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.79 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.78 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.78 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.77 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.74 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 99.7 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.69 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 99.67 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.65 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.61 | |
| KOG0541 | 171 | consensus Alkyl hydroperoxide reductase/peroxiredo | 99.56 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.56 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 99.55 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.38 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 99.38 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 99.36 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.34 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.33 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.32 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.19 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.19 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.18 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.18 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.16 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.1 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.07 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.03 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.01 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 98.96 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 98.96 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 98.94 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 98.94 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 98.94 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 98.93 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 98.92 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 98.91 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 98.9 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 98.9 | |
| PHA02278 | 103 | thioredoxin-like protein | 98.89 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 98.88 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 98.88 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 98.85 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 98.85 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.84 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 98.83 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 98.82 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 98.8 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 98.8 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 98.79 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 98.79 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 98.78 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 98.77 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 98.74 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 98.73 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.73 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 98.71 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 98.7 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.69 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 98.65 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 98.64 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 98.63 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.63 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 98.62 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 98.61 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.6 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 98.57 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.55 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 98.54 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.53 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.53 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.5 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 98.49 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.48 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.47 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.44 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 98.43 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.39 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.38 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.35 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.28 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 98.27 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.27 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.23 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.21 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 98.17 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.11 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.08 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.06 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.04 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.04 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 97.99 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 97.96 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 97.96 | |
| PF10417 | 40 | 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredox | 97.9 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 97.81 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.79 | |
| KOG4498 | 197 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| PHA02125 | 75 | thioredoxin-like protein | 97.76 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 97.74 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 97.67 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.65 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 97.64 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 97.52 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 97.5 | |
| smart00594 | 122 | UAS UAS domain. | 97.49 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 97.31 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 97.11 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 97.06 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 97.03 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 96.58 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 96.48 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 96.45 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 96.38 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 96.23 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 96.23 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.22 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.19 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 96.07 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 96.04 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 96.04 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 95.91 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 95.85 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 95.3 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 95.29 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 95.12 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 94.4 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 94.35 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 94.12 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 93.98 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 93.8 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 93.52 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 93.44 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 93.44 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 93.3 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 92.93 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 92.01 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 91.63 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 91.44 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 90.62 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 90.45 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 90.13 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 89.88 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 89.81 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 89.57 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 89.28 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 88.98 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 88.87 | |
| PF06764 | 202 | DUF1223: Protein of unknown function (DUF1223); In | 88.64 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 88.08 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 87.73 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 87.69 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 87.51 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 86.64 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 86.49 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 86.14 | |
| COG3054 | 184 | Predicted transcriptional regulator [General funct | 85.95 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 84.85 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 83.13 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 83.03 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 82.57 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 82.35 | |
| PRK12559 | 131 | transcriptional regulator Spx; Provisional | 81.84 | |
| PRK01655 | 131 | spxA transcriptional regulator Spx; Reviewed | 81.55 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 81.02 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 80.34 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 80.24 |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=282.22 Aligned_cols=190 Identities=59% Similarity=1.077 Sum_probs=180.9
Q ss_pred CCCCCCCCCeEEeee-cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAV-FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~-~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|+.+++ .+....+++|+++.|| ++||+|||+.+.++|+.|+..++++|++|+++|++||+||+|+.+.+
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gk-w~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGK-WVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCc-EEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 679999999999988 3433469999999995 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+|.+...+.+++.+++||++.|.+.++++.||+..++.|...+.+||||++|+|++..+++.+++++++|+|+.+++||
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999989888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
+.++| ++.||++|++|+++|+|++.+ .+|+.+
T Consensus 162 ~~~~h-g~vcPanW~~G~~~i~p~~~~-~~~~~~ 193 (194)
T COG0450 162 FVAKH-GEVCPANWKPGDKTIKPSPDL-GEYLKE 193 (194)
T ss_pred HHHHh-CCCccCCCCCCCccccCCccc-hhhhhc
Confidence 99999 999999999999999999999 999875
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=286.84 Aligned_cols=189 Identities=46% Similarity=0.917 Sum_probs=172.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|++.++.+.+++.++|+++ +|+ ++||+||+++|||+|..|++.|++++++|+++|++||+||.|+++.+
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk-~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h 146 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDS-YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSH 146 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCC-eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 6799999999998644556678999998 776 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++|.+...+.++..+++||+++|.+.+++++||+.. ..|+..|++||||++|+|++.++++...+++++|+++.|+++|
T Consensus 147 ~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~-~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 147 KAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLR-DEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCC-cCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 999986555545557899999999999999999975 3466799999999999999999999999999999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCchhhHHHhh
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 269 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 269 (271)
+.+++ ++.||++|+||++++.|++..+++||.
T Consensus 226 ~~~~~-g~~cPanW~~g~~~~~~~~~~~~~~~~ 257 (261)
T PTZ00137 226 FAEKT-GNVCPVNWKQGDQAMKPDSQSVKQYLS 257 (261)
T ss_pred hhhhc-CCCcCCCCCcCCceecCCcccHHHHHh
Confidence 99988 999999999999999999999999996
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=275.54 Aligned_cols=190 Identities=45% Similarity=0.882 Sum_probs=171.1
Q ss_pred CCCCCCCCCeEEeeecCCCce---eEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFI---NVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~---~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
..+|+++|+|+++++.+ +|+ .++|+++ +|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.
T Consensus 2 ~~vg~~aPdF~~~~~~~-~g~~~~~~~l~~~~~gk-~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~ 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLG-SGEIVDKFNFKQHTNGK-TTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE 79 (200)
T ss_pred CcCCCcCCCCEeecccC-CCceeeeeeHHHHhCCC-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 35899999999986532 344 4566666 677 99999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.+++|.+...+..++.+++||+++|.+.++++.||+.....|+..|.+||||++|+|++.+.++...+++++|+++.|+
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 99999998766655555679999999999999999998777788899999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 234 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
++|+.+++ ++.||++|.||+++|++++.+.++||+.
T Consensus 160 al~~~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~~~~ 195 (200)
T PRK15000 160 ALQFHEEH-GDVCPAQWEKGKEGMNASPDGVAKYLAE 195 (200)
T ss_pred HhhhHHhc-CCCcCCCCCCCCceeccCHHHHHHHHHH
Confidence 99999999 8999999999999999999999999963
|
|
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=262.56 Aligned_cols=191 Identities=66% Similarity=1.129 Sum_probs=184.9
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+..++|+|.-..+.+...+.++|++|+|| ++|++||+..|.-+|+.++-.+++.+++|++.|.+||++|+|+.+.+.
T Consensus 4 ~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gk-yvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshl 82 (196)
T KOG0852|consen 4 EVVFKPAPDFKGTAVVDGEFKEIKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHL 82 (196)
T ss_pred cccCCCCCCcceeEEEcCcceEEeehhhccc-EEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhh
Confidence 4466778999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|...-++.+|+..+++|+++|.+.++++.||+...+.|+..+..||||++|.++++.+.+..++++++|+++.+++.|+
T Consensus 83 AW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~ 162 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQF 162 (196)
T ss_pred hHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
..+| +++||++|+||.++++||.+.|||||..
T Consensus 163 td~~-geVcPagW~pgs~tikp~~~~skeyf~k 194 (196)
T KOG0852|consen 163 TDEH-GEVCPAGWKPGSDTIKPDVKDSKEYFSK 194 (196)
T ss_pred hhcc-CccccCCCCCCCcccCCCcchhHHHHhh
Confidence 9999 8999999999999999999999999975
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=272.65 Aligned_cols=186 Identities=37% Similarity=0.750 Sum_probs=170.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
..+|+++|+|+...+.+.+...++|++|+|| ++||+|||++|||+|..|++.|++++++|+++|++||+||.|+.+.++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk-~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~ 80 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK 80 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCC-eEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH
Confidence 4689999999999887888899999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+.... +.+++||+++|.+.++++.||+..+..|+..|.+||||++|+|++.++.+...+++++++++.|+++|+
T Consensus 81 a~~~~~~~---~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~ 157 (187)
T PRK10382 81 AWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 157 (187)
T ss_pred HHHHhhcc---ccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhh
Confidence 99987532 136899999999999999999976666777899999999999999999888899999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHH
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEY 267 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 267 (271)
.++++++.||++|++|+.+|.+++.+...|
T Consensus 158 ~~~~~g~~~p~~w~~~~~~~~~~~~~~~~~ 187 (187)
T PRK10382 158 VASHPGEVCPAKWKEGEATLAPSLDLVGKI 187 (187)
T ss_pred HhhcCCeEeCCCCCcCCcceecCHHHhccC
Confidence 999988999999999999999998776543
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=269.40 Aligned_cols=191 Identities=52% Similarity=0.962 Sum_probs=173.2
Q ss_pred CCCCCCCCCeEEeee-cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAV-FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~-~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|++.++ .+.+|+.++|++++|| ++||+||+++||+.|+.+++.|.+++++|+++|++||+||+|+.+.+
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk-~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGK-WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCC-EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 568999999998864 3567889999999998 89999999999999999999999999999999999999999999989
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+|.......++..+++||+++|.++++++.||+.....|+..|.+||||++|+|++.++++...+++++++++.|+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 89976554444444689999999999999999998666677789999999999999999998889999999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
...++ +++||++|++|+++|.+.+..+++||++
T Consensus 165 ~~~~~-~~~cp~~w~~g~~~~~~~~~~~~~~~~~ 197 (199)
T PTZ00253 165 FVEKH-GEVCPANWKKGDPTMKPDPNKSKEGFFS 197 (199)
T ss_pred hHHhc-CCEeCCCCCcCCccccCChHHHHHHhhc
Confidence 98886 8999999999999999999999999975
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=266.71 Aligned_cols=185 Identities=37% Similarity=0.708 Sum_probs=167.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+.+|+|++.+ .+| .++|++++|| ++||+||+++|||+|..+++.|++++++|+++|++||+||+|+.+.+.
T Consensus 2 ~~vG~~aP~F~~~~---~~g-~v~l~d~~gk-~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~ 76 (202)
T PRK13190 2 VKLGQKAPDFTVNT---TKG-PIDLSKYKGK-WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHI 76 (202)
T ss_pred CCCCCCCCCcEEec---CCC-cEeHHHhCCC-EEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 67899999999984 444 6999999998 888877779999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+...+..+. .++||+++|.++++++.||+.....|...|++||||++|+|++...++...+++++|+++.|+++|.
T Consensus 77 ~w~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 77 AWLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred HHHHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 999887654433 3689999999999999999976666767899999999999999998888899999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHHhh
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 269 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 269 (271)
..++ ++.||++|+||+++|.+.+.+.+++..
T Consensus 156 ~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~~~ 186 (202)
T PRK13190 156 NWKR-KVATPANWQPGQEGIVPAPSTLDEAEM 186 (202)
T ss_pred HHhc-CCCcCCCCCcCCceecCCCCCHHHHHH
Confidence 9999 899999999999999999998888764
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=265.91 Aligned_cols=185 Identities=37% Similarity=0.689 Sum_probs=164.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEec-ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKL-SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~L-sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|++. +.+|+ +.+ ++++|| ++||+||+++|||+|..+++.|++++++|+++|++||+||+|+.+.+
T Consensus 7 ~~iG~~aPdF~l~---~~~G~-~~l~~~~~GK-~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h 81 (215)
T PRK13191 7 PLIGEKFPEMEVI---TTHGK-IKLPDDYKGR-WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH 81 (215)
T ss_pred ccCCCcCCCCEee---cCCCC-EEcHHHhCCC-cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 6799999999998 44565 555 558998 89988888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC-CccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ-GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~-g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++|.+...+..+. +++||+++|.+.++++.||+..... +...|.+||||++|+|++.++++...+++++|+|+.|+++
T Consensus 82 ~aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 82 IEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHHHhhHHHhcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9998866554333 6789999999999999999975432 4568999999999999999999999999999999999999
Q ss_pred HHhhhCCCcccCCCCCC----CCCCCCCCchhhHHHhh
Q 024201 236 QYVQENPDEVCPAGWKP----GDKSMKPDPKLSKEYFA 269 (271)
Q Consensus 236 ~~~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~ 269 (271)
|...++ ++.||++|++ |+++|.|.+.+.+++..
T Consensus 161 q~~~~~-~~~~P~~w~~~~~~g~~~~~~~~~~~~~~~~ 197 (215)
T PRK13191 161 QLVDKA-GVVTPANWPNNELIGDKVINPAPRTIKDAKM 197 (215)
T ss_pred hhhhhc-CCCcCCCCCCCCCCCCceecCCCCCHHHHHH
Confidence 999999 8999999997 99999999999888753
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=255.67 Aligned_cols=182 Identities=45% Similarity=0.843 Sum_probs=162.0
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
.+|+++|+|++.++.+.+...+++++++|| ++||+|||++|||+|+.+++.|++++++|+++|++||+||.|+.+.+++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk-~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGK-WSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCC-EEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 479999999998543333347899999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHh
Q 024201 159 WVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYV 238 (271)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~ 238 (271)
|.+..... .+++|++++|.+.++++.||+.....|+..|++||||++|+|++.++.....+++++++++.|+++|++
T Consensus 82 ~~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~ 158 (187)
T TIGR03137 82 WHDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYV 158 (187)
T ss_pred HHhhhhhc---cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhH
Confidence 98765322 257899999999999999999866667778999999999999999988777788999999999999999
Q ss_pred hhCCCcccCCCCCCCCCCCCCCchhh
Q 024201 239 QENPDEVCPAGWKPGDKSMKPDPKLS 264 (271)
Q Consensus 239 ~~~~~~~~p~~~~~~~~~~~~~~~~~ 264 (271)
.+++++.||++|.+|++.|.++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (187)
T TIGR03137 159 AAHPGEVCPAKWKEGAETLKPSLDLV 184 (187)
T ss_pred HhcCCeeeCCCCCcCCccccCChHhh
Confidence 99988999999999999999986654
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=259.12 Aligned_cols=185 Identities=39% Similarity=0.708 Sum_probs=164.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+.+|+|++.++ +| .++++++ +|| ++||+||+++|||+|..+++.|++++++|+++|++||+||+|+.+.+
T Consensus 9 ~~vG~~aPdF~~~~~---~g-~~~l~d~~~Gk-~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h 83 (222)
T PRK13189 9 PLIGDKFPEFEVKTT---HG-PIKLPDDYKGK-WFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSH 83 (222)
T ss_pred ccCCCcCCCcEeEcC---CC-CEeeHHHhCCC-eEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence 679999999999854 44 4788774 887 89988888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC-CccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ-GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~-g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+|.+...+..+. +++||+++|.++++++.||+..... +...|++||||++|+|++.++++...+++++++++.|+++
T Consensus 84 ~aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 84 IKWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9999987654433 5789999999999999999975432 3468999999999999999999989999999999999999
Q ss_pred HHhhhCCCcccCCCCCCCC----CCCCCCchhhHHHhh
Q 024201 236 QYVQENPDEVCPAGWKPGD----KSMKPDPKLSKEYFA 269 (271)
Q Consensus 236 ~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~ 269 (271)
|...++ ++.||++|+||+ ++|.+.+.+.+++..
T Consensus 163 q~~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~ 199 (222)
T PRK13189 163 QTSDEK-GVATPANWPPNDLIKDKVIVPPASSVEEAKK 199 (222)
T ss_pred hhHhhc-CcCcCCCCCCCCCCCCceeeCCCCCHHHHHH
Confidence 999999 899999999999 999999998888753
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=255.18 Aligned_cols=182 Identities=37% Similarity=0.672 Sum_probs=161.6
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~ 159 (271)
+|+.+|+|++.+ .+| .++|++++|++++||+|++++|||.|..+++.|++++++|+++|++||+||+|+.+.+.+|
T Consensus 1 vG~~aP~F~~~~---~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADT---THG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEec---CCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 589999999984 344 5899999995588888888999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC--CccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ--GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~--g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
.+...+..+ .+++||+++|.++++++.||+..... +...|.+||||++|+|++.++++...+++.+++++.|+++|.
T Consensus 77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 998766544 47899999999999999999975432 335689999999999999999988899999999999999998
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHH
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEY 267 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 267 (271)
..++ ++.||++|+||+++|.+.+...++-
T Consensus 156 ~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~ 184 (203)
T cd03016 156 TDKH-KVATPANWKPGDDVIVPPSVSDEEA 184 (203)
T ss_pred Hhhc-CcCcCCCCCCCCceecCCCCCHHHH
Confidence 8887 8999999999999999988877763
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=243.36 Aligned_cols=172 Identities=68% Similarity=1.172 Sum_probs=154.6
Q ss_pred CCCCCCCeEEeeecC-CCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 80 VGNTAPDFAAEAVFD-QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~-~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
+|+++|+|+++++.+ .+|+.++|++++|| ++||+||+++|||.|..+++.|++++++|.++|+.+|+||.|+.+...+
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk-~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGK-WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCC-EEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 599999999997765 55689999999997 9999999999999999999999999999999999999999999888888
Q ss_pred HHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHh
Q 024201 159 WVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYV 238 (271)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~ 238 (271)
|.+...+..+..+++|+++.|.++++++.||+.....|+..|++||||++|+|++.+++....+++.+++++.|+.++..
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~ 159 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFV 159 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhh
Confidence 98876543333468999999999999999999877667778999999999999999988777788899999999999988
Q ss_pred hhCCCcccCCCCCCC
Q 024201 239 QENPDEVCPAGWKPG 253 (271)
Q Consensus 239 ~~~~~~~~p~~~~~~ 253 (271)
.+| ++.||++|++|
T Consensus 160 ~~~-~~~~~~~~~~~ 173 (173)
T cd03015 160 EEH-GEVCPANWKPG 173 (173)
T ss_pred hhc-CCCcCCCCCCC
Confidence 888 89999999986
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=247.77 Aligned_cols=183 Identities=33% Similarity=0.605 Sum_probs=160.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|++. +.+|+.+.+++++|| ++||+||+++|||+|..+++.|++++++|+++|++||+||+|+.+.+.
T Consensus 2 ~~~Gd~aPdF~l~---t~~G~~~~~~~~~Gk-~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~ 77 (215)
T PRK13599 2 KLLGEKFPSMEVV---TTQGVKRLPEDYAGK-WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHI 77 (215)
T ss_pred CCCCCCCCCCEeE---CCCCcEecHHHHCCC-eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 3689999999998 556778888999998 888888889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCc-cceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~-~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+|.+...+..+ .+++||+++|.++++++.||+..+..|. ..|++||||++|+|++.++++...+++++++++.|++||
T Consensus 78 ~w~~~i~~~~~-~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq 156 (215)
T PRK13599 78 KWVEWIKDNTN-IAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred HHHHhHHHhcC-CCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 99886644322 2678999999999999999997554343 579999999999999999888889999999999999999
Q ss_pred HhhhCCCcccCCCCCC----CCCCCCCCchhhHH
Q 024201 237 YVQENPDEVCPAGWKP----GDKSMKPDPKLSKE 266 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~ 266 (271)
...++ ++.||++|+| ||+++.+-+...++
T Consensus 157 ~~~~~-~~~~p~~w~~~~~~g~~~~~~~~~~~~~ 189 (215)
T PRK13599 157 TADQY-GVALPEKWPNNYLIKDHVIVPPSTDEAS 189 (215)
T ss_pred hhhhc-CCCcCCCCCCCCCCCCcEEEcCCCCHHH
Confidence 88888 8999999999 99999877665554
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-31 Score=211.83 Aligned_cols=147 Identities=39% Similarity=0.587 Sum_probs=136.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|||+|+ +.+|+.++|++++|+ +|||+|||..++|.|..|...|++.+++|++.|++||+||.|++..++
T Consensus 4 l~~G~~aPdF~Lp---~~~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~ 79 (157)
T COG1225 4 LKVGDKAPDFELP---DQDGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHK 79 (157)
T ss_pred CCCCCcCCCeEee---cCCCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH
Confidence 7899999999999 888889999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC------ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG------IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g------~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
+|.+++ +++|++++|.+.+++++||+...... ...|.+||||++|+|++.+ .......+++++++.
T Consensus 80 ~F~~k~-------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~ 151 (157)
T COG1225 80 KFAEKH-------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAA 151 (157)
T ss_pred HHHHHh-------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHH
Confidence 999999 89999999999999999999865431 3579999999999999998 777788899999999
Q ss_pred HHHHH
Q 024201 232 LQALQ 236 (271)
Q Consensus 232 l~~l~ 236 (271)
|+.+.
T Consensus 152 l~~l~ 156 (157)
T COG1225 152 LKKLA 156 (157)
T ss_pred HHHhc
Confidence 98764
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=192.92 Aligned_cols=146 Identities=38% Similarity=0.680 Sum_probs=129.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|++. +.+|+.+++++++|++++||+||+++|||.|+.+++.|++++++++++|+++|+|+.|+.+.++
T Consensus 1 ~~~G~~~p~~~l~---~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~ 77 (149)
T cd03018 1 LEVGDKAPDFELP---DQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR 77 (149)
T ss_pred CCCCCcCCCcEec---CCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH
Confidence 4689999999998 5678899999999933899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCC--hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADIT--KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~--~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+|.+++ +++|++++|.+ .++++.||+.....|+..|++||||++|+|++.+.+......+..++.+.|+
T Consensus 78 ~~~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 78 AWAEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred HHHHhc-------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 999987 78999999988 9999999998554456678999999999999999888766677777777664
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=190.82 Aligned_cols=183 Identities=34% Similarity=0.640 Sum_probs=164.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+..|+.+|+|+..+..+ .+++.|+.|..|.||+-.++.+.|+|..++-++.++..||.++||..|+.|+|+.+.++
T Consensus 6 l~lgd~~PNfea~Tt~g----~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 6 LRLGDTVPNFEADTTVG----KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK 81 (224)
T ss_pred ccccCcCCCcccccccc----ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH
Confidence 66899999999964433 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCC--CcccceEEcCChHHHHHhCCccCC------CCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q 024201 158 AWVQTDRKSGGLG--DLKYPLIADITKSISKSYGVLIPD------QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETL 229 (271)
Q Consensus 158 ~~~~~~~~~~~~~--~~~f~~l~D~~~~~~~~ygv~~~~------~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l 229 (271)
.|.+.++...... .++||++.|.+.+++-.||+...+ .|...+..||||++-+|+-..+++..++++.+|+|
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiL 161 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEIL 161 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHH
Confidence 9999997665443 489999999999999999988433 34567999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcccCCCCCCCCCCCCCCchhhHH
Q 024201 230 RTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKE 266 (271)
Q Consensus 230 ~~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 266 (271)
+.|+.||..+++ ++..|++|+||++.|. -|.+++|
T Consensus 162 RvidsLqlt~~k-~VaTP~nWkpg~~vmi-lPtV~~e 196 (224)
T KOG0854|consen 162 RVIDSLQLTDKK-GVATPVNWKPGDKVMI-LPTVSDE 196 (224)
T ss_pred HHHHHHhhhccc-ccccccccCCCCceEE-cCcCChH
Confidence 999999999887 7999999999999998 5555554
|
|
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=191.62 Aligned_cols=147 Identities=29% Similarity=0.521 Sum_probs=125.5
Q ss_pred ccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 73 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 73 ~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.+.+ +.+|+++|+|++. +.+|+.++|++++|| ++||+||+..|||+|..+++.|+++++++. |++||+||.|+
T Consensus 14 ~~~~-~~~G~~~P~f~l~---~~~g~~v~l~~~~Gk-~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~ 86 (167)
T PRK00522 14 AGSL-PQVGDKAPDFTLV---ANDLSDVSLADFAGK-RKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADL 86 (167)
T ss_pred eCCC-CCCCCCCCCeEEE---cCCCcEEehHHhCCC-EEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence 3444 7799999999998 678889999999998 899999954449999999999999999983 89999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCcc-cceEEcC-ChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEec-cCCCCCCHH
Q 024201 153 VFSHLAWVQTDRKSGGLGDLK-YPLIADI-TKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTIN-NLAIGRSVD 226 (271)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~-f~~l~D~-~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~-~~~~~~~~~ 226 (271)
++.+++|.+++ ++. +++++|. ++++++.||+.... .|+..|++||||++|+|++.++. +.....+++
T Consensus 87 ~~~~~~f~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~ 159 (167)
T PRK00522 87 PFAQKRFCGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYD 159 (167)
T ss_pred HHHHHHHHHhC-------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHH
Confidence 99999999987 555 7899995 56999999997543 56777899999999999999875 445666889
Q ss_pred HHHHHHH
Q 024201 227 ETLRTLQ 233 (271)
Q Consensus 227 e~l~~l~ 233 (271)
++++.|+
T Consensus 160 ~~l~~l~ 166 (167)
T PRK00522 160 AALAALK 166 (167)
T ss_pred HHHHHhh
Confidence 9988875
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=198.49 Aligned_cols=196 Identities=20% Similarity=0.230 Sum_probs=133.9
Q ss_pred CCcccCCCCCCCcceecccccccCCCccccCCCCCCcc----c-cccccccceeeecccCcCCCCCCCCCCeEEeeecCC
Q 024201 21 PKAFSSSSISPSQNLTIPRSFSGLRNPLKSQVPRPVSL----S-RGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQ 95 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~G~~~Pdf~l~~~~~~ 95 (271)
.+.+...++++++++.+|..-.++..+....+....+. . +.....|++.+... ...|+.+|+|+++ +.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~aPdF~l~---d~ 87 (236)
T PLN02399 15 KTVFNSSPPPPSMAFLVPSLKSSTGISKSAFLSNGFSLKSPNSPGFLSKSRSFGVYAR----AATEKSVHDFTVK---DI 87 (236)
T ss_pred ccccccCCCCCccccccceeeeccccccchhhccccccccCCCccccccccccccccc----hhcCCCCCceEEE---CC
Confidence 33444444555567777766655544433322222211 1 11112334443333 2369999999998 67
Q ss_pred CceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------CHHHHHHHH-HHhhhc
Q 024201 96 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SVFSHLAWV-QTDRKS 166 (271)
Q Consensus 96 ~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~~~~~~~~~-~~~~~~ 166 (271)
+|+.++|++++|| ++||+|| ++|||+|..++|.|++++++|+++|++||+|+.| +.+++++|+ +++
T Consensus 88 ~G~~vsLsd~kGK-~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~--- 162 (236)
T PLN02399 88 DGKDVALSKFKGK-VLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRF--- 162 (236)
T ss_pred CCCEEeHHHhCCC-eEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhc---
Confidence 7889999999997 9999999 9999999999999999999999999999999974 445677776 455
Q ss_pred CCCCCcccceEEc--CCh-HHHHHhCCccCC-C---C---ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 167 GGLGDLKYPLIAD--ITK-SISKSYGVLIPD-Q---G---IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 167 ~~~~~~~f~~l~D--~~~-~~~~~ygv~~~~-~---g---~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+++||++.| .++ .+.+.|++.... . | .+.|++||||++|+|++++.+.. +.+++.+.|+.+.
T Consensus 163 ----g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~----~~~~le~~I~~lL 234 (236)
T PLN02399 163 ----KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT----SPFQIEKDIQKLL 234 (236)
T ss_pred ----CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHh
Confidence 788999854 334 455566532110 0 1 14699999999999999986542 4566666676653
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=180.91 Aligned_cols=124 Identities=30% Similarity=0.603 Sum_probs=115.2
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~ 159 (271)
+|+++|+|+++ +.+|+.++|++++|| ++||+||+.+|||.|..+++.|++++++|+++|+++|+|+.|+.+.+++|
T Consensus 1 vG~~~P~f~l~---~~~g~~~~l~~l~gk-~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 76 (124)
T PF00578_consen 1 VGDKAPDFTLT---DSDGKTVSLSDLKGK-PVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQF 76 (124)
T ss_dssp TTSBGGCEEEE---TTTSEEEEGGGGTTS-EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHH
T ss_pred CcCCCCCcEeE---CCCCCEEEHHHHCCC-cEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhh
Confidence 69999999998 777889999999997 99999996669999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.+.+ +++|+++.|.+.++.+.||+.........|.+||||++|+|+++
T Consensus 77 ~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 77 LEEY-------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHH-------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhh-------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 9998 78999999999999999999866555578999999999999984
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=184.27 Aligned_cols=139 Identities=29% Similarity=0.505 Sum_probs=120.6
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
++|+++|+|++. +.+|+.++|++++|| ++||+||++.|||+|+.+++.|++++++++ |+.||+||.|+.+.+++
T Consensus 1 ~~G~~aP~f~l~---~~~g~~~~l~~~~gk-~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~ 74 (143)
T cd03014 1 KVGDKAPDFTLV---TSDLSEVSLADFAGK-VKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKR 74 (143)
T ss_pred CCCCCCCCcEEE---CCCCcEEeHHHhCCC-eEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHH
Confidence 369999999998 677789999999998 899999965668999999999999999984 89999999999988999
Q ss_pred HHHHhhhcCCCCC-cccceEEcCC-hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC-CCCCCHHHHHH
Q 024201 159 WVQTDRKSGGLGD-LKYPLIADIT-KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL-AIGRSVDETLR 230 (271)
Q Consensus 159 ~~~~~~~~~~~~~-~~f~~l~D~~-~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~-~~~~~~~e~l~ 230 (271)
|.+.+ + .+|++++|.. ..++++||+..+..|+..|++||||++|+|++.+++.. ....+++++++
T Consensus 75 ~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 75 WCGAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred HHHhc-------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 99987 4 3789999996 99999999987666777899999999999999998643 44456776664
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=186.58 Aligned_cols=144 Identities=28% Similarity=0.457 Sum_probs=124.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+.+|+|++. +.+|+.++|++++|| ++||+||+..|||.|+.+++.|.+++++++++|+++|+|+.|+.+.++
T Consensus 4 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~ 79 (154)
T PRK09437 4 LKAGDIAPKFSLP---DQDGEQVSLTDFQGQ-RVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS 79 (154)
T ss_pred CCCCCcCCCcEee---CCCCCEEeHHHhCCC-CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 6789999999998 667789999999998 899999977789999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC--Cc----cceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ--GI----ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~--g~----~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
+|.+++ +++|+++.|.++.+++.||+..... |. ..|++||||++|+|++.+.+. ...+..+++++.
T Consensus 80 ~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~-~~~~~~~~~~~~ 151 (154)
T PRK09437 80 RFAEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKF-KTSNHHDVVLDY 151 (154)
T ss_pred HHHHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCC-CcchhHHHHHHH
Confidence 999987 7899999999999999999874321 10 137889999999999997553 444567777777
Q ss_pred HH
Q 024201 232 LQ 233 (271)
Q Consensus 232 l~ 233 (271)
++
T Consensus 152 ~~ 153 (154)
T PRK09437 152 LK 153 (154)
T ss_pred Hh
Confidence 65
|
|
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=183.87 Aligned_cols=132 Identities=25% Similarity=0.489 Sum_probs=114.3
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCC-CCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLD-FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t-~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
++|+++|+|+++++ +.+|+.++|++++|| ++||+|| ++ |||+|+.++|.|.+++++++++|+++|+|+.++.....
T Consensus 1 k~G~~~P~~~~~~~-~~~g~~~~l~~~~gk-~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~ 77 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-DLDGKPVSLSDFKGK-PVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVR 77 (146)
T ss_dssp STTSB--CCEEEEE-ETTSEEEEGGGGTTS-EEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHH
T ss_pred CCCCCCCCeEEEee-cCCCCEecHHHhCCC-eEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHH
Confidence 58999999999732 478999999999999 8999999 56 99999999999999999999999999999998777788
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEeccCC
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINNLA 220 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~~~ 220 (271)
+|++++ +.+|+++.|.+.+++++||+.... .|+.+|++||||+||+|++.+.+...
T Consensus 78 ~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 78 EFLKKY-------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHT-------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHhh-------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 888886 789999999999999999976322 23468999999999999999887655
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=181.80 Aligned_cols=137 Identities=37% Similarity=0.525 Sum_probs=119.9
Q ss_pred CCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 161 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~ 161 (271)
+++|+|++. +.+|+.+++++++|| ++||+||+++|||.|..+++.|++++++++++|+++|+|+.|+.+...+|.+
T Consensus 1 ~~~p~f~l~---~~~g~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 76 (140)
T cd03017 1 DKAPDFTLP---DQDGETVSLSDLRGK-PVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAE 76 (140)
T ss_pred CCCCCcccc---CCCCCEEeHHHhCCC-cEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 478999998 667889999999998 8999999889999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCcccceEEcCChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 162 TDRKSGGLGDLKYPLIADITKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
++ +++|+++.|.+..+++.||+.... .+...|++||||++|+|++.+.+.. .+++++++++
T Consensus 77 ~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~~~ 140 (140)
T cd03017 77 KY-------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEVLE 140 (140)
T ss_pred Hh-------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC-ccchHHHHhC
Confidence 87 789999999999999999998431 1223499999999999999986554 6777777763
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=183.72 Aligned_cols=134 Identities=23% Similarity=0.350 Sum_probs=118.3
Q ss_pred CCCCCCCeEEeeecCCCceeEeccc-ccCCcEEEEEEecCCCCCChHHH-HHHHHHHHHHHHhcCc-EEEEEeCCCHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSD-YIGKKYVILFFYPLDFTFVCPTE-ITAFSDRYTEFEKLNT-EILGVSTDSVFSH 156 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~~~-l~~L~~~~~~~~~~gv-~vv~VS~d~~~~~ 156 (271)
+|+++|+|++.+..+.+|+.++|++ ++|+ ++||+|||+.|||.|..+ ++.|++.+++|++.|+ .|++||.|+++.+
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk-~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~ 79 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGK-KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVM 79 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCC-cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHH
Confidence 5999999999965444688999999 5887 899999999999999999 9999999999999999 6999999999999
Q ss_pred HHHHHHhhhcCCCCCc--ccceEEcCChHHHHHhCCccCCC--Cc---cceEEEEEcCCCcEEEEEeccCCCC
Q 024201 157 LAWVQTDRKSGGLGDL--KYPLIADITKSISKSYGVLIPDQ--GI---ALRGLFIIDKEGVIQHSTINNLAIG 222 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~--~f~~l~D~~~~~~~~ygv~~~~~--g~---~~P~~~lID~~G~V~~~~~~~~~~~ 222 (271)
++|.+++ ++ +|++++|.+.+++++||+..... |. ..|.+|||| +|+|++.++.....+
T Consensus 80 ~~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~ 144 (155)
T cd03013 80 KAWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPGD 144 (155)
T ss_pred HHHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCCCC
Confidence 9999998 54 89999999999999999986543 32 579999999 799999988765543
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=180.42 Aligned_cols=152 Identities=18% Similarity=0.311 Sum_probs=126.7
Q ss_pred CCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-------
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS------- 152 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~------- 152 (271)
|+.+|+|++. +.+|+.++|+++ +|+ ++||+|| ++|||.|..+++.|.+++++|+++++++|+|+.|+
T Consensus 1 g~~~p~f~l~---~~~g~~v~l~~~~~~k-~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d 75 (171)
T cd02969 1 GSPAPDFSLP---DTDGKTYSLADFADGK-ALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPED 75 (171)
T ss_pred CCcCCCcccc---CCCCCEEeHHHHhCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccc
Confidence 7889999998 667779999998 666 9999999 89999999999999999999998899999999975
Q ss_pred -HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCC-----CCCCHH
Q 024201 153 -VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA-----IGRSVD 226 (271)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~-----~~~~~~ 226 (271)
.+..++|.+.+ +++|+++.|.+..+++.||+. ..|.+||||++|+|++....+.. .....+
T Consensus 76 ~~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~ 142 (171)
T cd02969 76 SPENMKAKAKEH-------GYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGR 142 (171)
T ss_pred CHHHHHHHHHHC-------CCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccccccHH
Confidence 45666777765 678999999999999999998 78999999999999988543221 123567
Q ss_pred HHHHHHHHHHHh-----hhCCCcccCCCC
Q 024201 227 ETLRTLQALQYV-----QENPDEVCPAGW 250 (271)
Q Consensus 227 e~l~~l~~l~~~-----~~~~~~~~p~~~ 250 (271)
++.++|+++..- .+-++.+|+.+|
T Consensus 143 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 143 DLRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred HHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 788888877533 255688999998
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=170.62 Aligned_cols=134 Identities=48% Similarity=0.821 Sum_probs=116.0
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~ 162 (271)
.+|+|++. +.+|+.+++++++|+ ++||+||+++||+.|..+++.|++++++|+++|+.+|+|+.|+.+..++|.++
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk-~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~ 76 (140)
T cd02971 1 KAPDFTLP---ATDGGEVSLSDFKGK-WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEK 76 (140)
T ss_pred CCCCceec---cCCCcEEehHHhCCC-eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 47999998 667789999999988 89999999999999999999999999999888999999999999888999887
Q ss_pred hhhcCCCCCcccceEEcCChHHHHHhCCccCCC---CccceEEEEEcCCCcEEEEEeccCCCCCCHH
Q 024201 163 DRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ---GIALRGLFIIDKEGVIQHSTINNLAIGRSVD 226 (271)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~---g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~ 226 (271)
+ ...+|+++.|.++.+++.||+..... +...|++||||++|+|++.+.+........+
T Consensus 77 ~------~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~ 137 (140)
T cd02971 77 E------GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAE 137 (140)
T ss_pred c------cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChH
Confidence 6 15689999999999999999985432 3456899999999999999987766444333
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-24 Score=170.94 Aligned_cols=125 Identities=27% Similarity=0.426 Sum_probs=108.7
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~ 162 (271)
.+|+|++. +.+|+.++++++.+++++||+||+++|||+|+.+++.|++++++++++|+++|+|+.|+.+...+|.+.
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELP---DAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCcccc---CCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 47999998 667789999998764478888877999999999999999999999999999999999998888888887
Q ss_pred hhhcCCCCCcccceEEcCChHHHHHhCCccCC-----------------------CCccceEEEEEcCCCcEEEEEec
Q 024201 163 DRKSGGLGDLKYPLIADITKSISKSYGVLIPD-----------------------QGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~-----------------------~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
+ +++|+++.|++.++++.||+.... .+...|++||||++|+|++.+++
T Consensus 78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 6 789999999999999999995322 22468999999999999999753
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-23 Score=172.65 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=109.4
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC-------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST------- 150 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~------- 150 (271)
-..|..+|+|+++ +.+|+.++|++++|| ++||+|| ++|||+|+.++|.|++++++|+++|++||+|++
T Consensus 13 ~~~~~~~pdf~l~---d~~G~~vsL~~~kGk-vvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e 87 (199)
T PTZ00056 13 DELRKSIYDYTVK---TLEGTTVPMSSLKNK-VLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQE 87 (199)
T ss_pred hhcCCCCCceEEE---CCCCCEEeHHHhCCC-EEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCC
Confidence 3468899999998 677889999999998 8999999 999999999999999999999999999999996
Q ss_pred -CCHHHHHHHHHHhhhcCCCCCcccceEEcC------ChHHHH--------HhCCccCCCCc-cceEEEEEcCCCcEEEE
Q 024201 151 -DSVFSHLAWVQTDRKSGGLGDLKYPLIADI------TKSISK--------SYGVLIPDQGI-ALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 151 -d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~------~~~~~~--------~ygv~~~~~g~-~~P~~~lID~~G~V~~~ 214 (271)
++.+++++|++++ +++||++.|. ...+.+ .|+......++ +.|++||||++|+|+++
T Consensus 88 ~d~~e~~~~f~~~~-------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~ 160 (199)
T PTZ00056 88 FPNTKDIRKFNDKN-------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAY 160 (199)
T ss_pred CCCHHHHHHHHHHc-------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEE
Confidence 4567888999887 7899998763 223322 23322111111 23589999999999998
Q ss_pred EeccCCCCCCHHHHHHHHHHHH
Q 024201 215 TINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 215 ~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.+.. ..+++.+.|+.+.
T Consensus 161 ~~g~~----~~~~l~~~I~~ll 178 (199)
T PTZ00056 161 FSPRT----EPLELEKKIAELL 178 (199)
T ss_pred eCCCC----CHHHHHHHHHHHH
Confidence 75432 3455556665553
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-23 Score=168.01 Aligned_cols=139 Identities=18% Similarity=0.224 Sum_probs=108.3
Q ss_pred CCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------C
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------S 152 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~ 152 (271)
-+.+|+|+++ +.+|+.++|++++|| ++||+|| ++|||.|..+++.|++++++|+++|+.||+|+.| +
T Consensus 6 ~~~~pdf~l~---d~~G~~v~l~~~~gk-~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~ 80 (167)
T PLN02412 6 PKSIYDFTVK---DIGGNDVSLNQYKGK-VLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGS 80 (167)
T ss_pred CCCCCceEEE---CCCCCEEeHHHhCCC-EEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCC
Confidence 3679999998 778889999999997 8999999 9999999999999999999999999999999975 3
Q ss_pred HHHHH-HHHHHhhhcCCCCCcccceEEc--CC-hHHHHHhCCccCCC------Cc-cceEEEEEcCCCcEEEEEeccCCC
Q 024201 153 VFSHL-AWVQTDRKSGGLGDLKYPLIAD--IT-KSISKSYGVLIPDQ------GI-ALRGLFIIDKEGVIQHSTINNLAI 221 (271)
Q Consensus 153 ~~~~~-~~~~~~~~~~~~~~~~f~~l~D--~~-~~~~~~ygv~~~~~------g~-~~P~~~lID~~G~V~~~~~~~~~~ 221 (271)
.+++. .|.+++ +++||++.| .+ ....+.|++...+. ++ ..|++||||++|+|++++.+..
T Consensus 81 ~~~~~~~~~~~~-------~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~-- 151 (167)
T PLN02412 81 NEEIQQTVCTRF-------KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT-- 151 (167)
T ss_pred HHHHHHHHHHcc-------CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC--
Confidence 33443 345665 789999874 44 36666666332111 11 4699999999999999987543
Q ss_pred CCCHHHHHHHHHHH
Q 024201 222 GRSVDETLRTLQAL 235 (271)
Q Consensus 222 ~~~~~e~l~~l~~l 235 (271)
+.+++.+.|+.+
T Consensus 152 --~~~~l~~~i~~~ 163 (167)
T PLN02412 152 --SPLKIEKDIQNL 163 (167)
T ss_pred --CHHHHHHHHHHH
Confidence 345666666655
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-23 Score=161.85 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=98.4
Q ss_pred CceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC------CCHHHHHHHHHHhhhcCCC
Q 024201 96 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST------DSVFSHLAWVQTDRKSGGL 169 (271)
Q Consensus 96 ~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~------d~~~~~~~~~~~~~~~~~~ 169 (271)
.|++++|++++|| ++||+|| ++|||+|..++|.|++++++++++|+.+|+|+. ++.+.+++|++++
T Consensus 12 ~~~~v~l~~~~gk-~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~------ 83 (126)
T cd03012 12 TDKPLSLAQLRGK-VVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY------ 83 (126)
T ss_pred CCCccCHHHhCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc------
Confidence 3568999999997 9999999 899999999999999999999999999999986 3467778888887
Q ss_pred CCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 170 GDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 170 ~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
+++|+++.|.+.++++.|++. .+|++||||++|+|++++.++
T Consensus 84 -~~~~p~~~D~~~~~~~~~~v~------~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 84 -GITYPVANDNDYATWRAYGNQ------YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred -CCCCCEEECCchHHHHHhCCC------cCCeEEEECCCCcEEEEEecC
Confidence 789999999999999999998 899999999999999998764
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-23 Score=167.00 Aligned_cols=122 Identities=18% Similarity=0.239 Sum_probs=98.1
Q ss_pred CCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------CHHH
Q 024201 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SVFS 155 (271)
Q Consensus 84 ~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~~~~ 155 (271)
+|+|++. +.+|+.++|++++|| ++||+|| ++||| |..++|.|++++++|+++|+.||+|+.| +.+.
T Consensus 2 ~~~f~l~---d~~G~~v~l~~~~Gk-~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~ 75 (152)
T cd00340 2 IYDFSVK---DIDGEPVSLSKYKGK-VLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEE 75 (152)
T ss_pred cceeEEE---CCCCCEEeHHHhCCC-EEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHH
Confidence 6999998 678889999999998 8999999 99999 9999999999999999899999999874 3567
Q ss_pred HHHHHHH-hhhcCCCCCcccceEEcC--ChH-HHHHhCCccCCC-------CccceEEEEEcCCCcEEEEEecc
Q 024201 156 HLAWVQT-DRKSGGLGDLKYPLIADI--TKS-ISKSYGVLIPDQ-------GIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~~f~~l~D~--~~~-~~~~ygv~~~~~-------g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
+++|+++ + +++||++.|. ++. ..+.|++..... -.+.|++||||++|+|++++.+.
T Consensus 76 ~~~f~~~~~-------~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~ 142 (152)
T cd00340 76 IKEFCETNY-------GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPT 142 (152)
T ss_pred HHHHHHHhc-------CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCC
Confidence 8899886 5 6889999864 333 455565321100 01244899999999999998765
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-23 Score=170.57 Aligned_cols=141 Identities=19% Similarity=0.267 Sum_probs=101.1
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-------
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS------- 152 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~------- 152 (271)
.++.+|+|+++ +.+|+.++|++++||.++|+++| ++|||+|+.++|.|++++++|+++|+.||+|++|+
T Consensus 16 ~~~~~p~f~l~---d~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 16 PTKSFFEFEAI---DIDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPW 91 (183)
T ss_pred CCCcccceEeE---cCCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCC
Confidence 36789999998 67778999999999944455668 99999999999999999999999999999999752
Q ss_pred -HHHHHHHHH-HhhhcCCCCCcccceEEc--CChHH-HHHhCCccCC--------CCc-cce---EEEEEcCCCcEEEEE
Q 024201 153 -VFSHLAWVQ-TDRKSGGLGDLKYPLIAD--ITKSI-SKSYGVLIPD--------QGI-ALR---GLFIIDKEGVIQHST 215 (271)
Q Consensus 153 -~~~~~~~~~-~~~~~~~~~~~~f~~l~D--~~~~~-~~~ygv~~~~--------~g~-~~P---~~~lID~~G~V~~~~ 215 (271)
.++..+|.. ++ +++||++.| .++.. .+.|+..... .++ .+| ++||||++|+|++++
T Consensus 92 ~~~~~~~f~~~~~-------~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 92 DEPEIKEYVQKKF-------NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred CHHHHHHHHHHhc-------CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 345566654 44 788999965 44332 3333211000 011 345 579999999999998
Q ss_pred eccCCCCCCHHHHHHHHHHH
Q 024201 216 INNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 216 ~~~~~~~~~~~e~l~~l~~l 235 (271)
.+.. +.+++.+.|+.+
T Consensus 165 ~g~~----~~~~l~~~I~~l 180 (183)
T PTZ00256 165 SPKV----NPNEMIQDIEKL 180 (183)
T ss_pred CCCC----CHHHHHHHHHHH
Confidence 7643 334455555544
|
|
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=163.86 Aligned_cols=137 Identities=26% Similarity=0.445 Sum_probs=119.0
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH-HH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV-FS 155 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~-~~ 155 (271)
.+.+|+.+|+|++. +.+|+.+++++++|+ +++|+|| ++||+.|+.+++.|.++++++.+.++++|+|+.|.. +.
T Consensus 34 ~~~~g~~~p~~~~~---~~~g~~~~l~~~~~k-~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~ 108 (173)
T PRK03147 34 KVQVGKEAPNFVLT---DLEGKKIELKDLKGK-GVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELA 108 (173)
T ss_pred ccCCCCCCCCcEee---cCCCCEEeHHHcCCC-EEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHH
Confidence 37799999999998 667789999999987 8999999 999999999999999999999988999999999764 56
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
...|.+++ +.+|+++.|.++++.+.||+. ..|++||||++|+|+..+.+. ...+++.+.|+++
T Consensus 109 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~----~~~~~l~~~l~~~ 171 (173)
T PRK03147 109 VKNFVNRY-------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGE----MTEEQLEEYLEKI 171 (173)
T ss_pred HHHHHHHh-------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCC----CCHHHHHHHHHHh
Confidence 67888877 789999999999999999998 899999999999999886543 2456666666655
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=169.85 Aligned_cols=122 Identities=19% Similarity=0.306 Sum_probs=102.9
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-CHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-SVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-~~~~ 155 (271)
..+|+++|+|++.+++ .+|+.++++++ +|| ++||+|| ++|||+|+.++|.|.++++ +|++||+|+.+ +.+.
T Consensus 39 ~~~g~~~p~f~l~~~~-g~g~~~~~~~~~~gk-~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~ 111 (185)
T PRK15412 39 ALIGKPVPKFRLESLE-NPGQFYQADVLTQGK-PVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQK 111 (185)
T ss_pred hhcCCCCCCcCCccCC-CCCccccHHHhcCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHH
Confidence 4579999999998553 22567777776 677 9999999 9999999999999987653 58999999975 4566
Q ss_pred HHHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC
Q 024201 156 HLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL 219 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~ 219 (271)
..+|.+++ +.+|+ ++.|.++.+.+.||+. .+|++||||++|+|++++.+..
T Consensus 112 ~~~~~~~~-------~~~~~~~~~D~~~~~~~~~gv~------~~P~t~vid~~G~i~~~~~G~~ 163 (185)
T PRK15412 112 AISWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDL 163 (185)
T ss_pred HHHHHHHc-------CCCCceEEEcCCccHHHhcCCC------cCCeEEEECCCceEEEEEecCC
Confidence 78899887 67888 4789999999999998 8999999999999999987654
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=168.92 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=107.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecc--cccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLS--DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Ls--d~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
+.+|+++|+|+++ +.+|+.++++ +++|| ++||+|| ++|||+|+.++|.+.+++++ .|+++++|+.|+.++
T Consensus 46 ~~vG~~aP~f~l~---d~~G~~v~l~~~~~~gk-~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~ 117 (189)
T TIGR02661 46 PDVGDAAPIFNLP---DFDGEPVRIGGSIAPGR-PTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAE 117 (189)
T ss_pred CCCCCcCCCcEec---CCCCCEEeccchhcCCC-EEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHH
Confidence 6799999999998 6778899995 57888 8999999 99999999999999998765 378899999998899
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+++|.+++ +++++.+. .++++.+.||+. .+|++||||++|+|++.. ..+..++++++++.++
T Consensus 118 ~~~~~~~~-------~~~~~~~~-~~~~i~~~y~v~------~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 118 HRRFLKDH-------ELGGERYV-VSAEIGMAFQVG------KIPYGVLLDQDGKIRAKG--LTNTREHLESLLEADR 179 (189)
T ss_pred HHHHHHhc-------CCCcceee-chhHHHHhccCC------ccceEEEECCCCeEEEcc--CCCCHHHHHHHHHHHH
Confidence 99999987 55655443 568999999998 899999999999999863 2233344555555543
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=162.50 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=103.8
Q ss_pred CCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--------CCHHH
Q 024201 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--------DSVFS 155 (271)
Q Consensus 84 ~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--------d~~~~ 155 (271)
+-+|++. +.+|+.++|++++|| ++||+|| ++|||+|..++|.|++++++|+++|+.||+|++ |+.+.
T Consensus 2 ~~~f~l~---~~~G~~~~l~~~~Gk-~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~ 76 (153)
T TIGR02540 2 FYSFEVK---DARGRTVSLEKYRGK-VSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKE 76 (153)
T ss_pred cccceeE---CCCCCEecHHHhCCC-EEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHH
Confidence 4578887 778889999999998 8999999 999999999999999999999999999999985 55678
Q ss_pred HHHHHHH-hhhcCCCCCcccceEEcC---ChHHH--HHhCCccCCCCccceE----EEEEcCCCcEEEEEeccCCCCCCH
Q 024201 156 HLAWVQT-DRKSGGLGDLKYPLIADI---TKSIS--KSYGVLIPDQGIALRG----LFIIDKEGVIQHSTINNLAIGRSV 225 (271)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~~f~~l~D~---~~~~~--~~ygv~~~~~g~~~P~----~~lID~~G~V~~~~~~~~~~~~~~ 225 (271)
+++|+++ + +++||++.|. +.... ..|.+... + ..|+ +||||++|+|++.+.+. ...
T Consensus 77 ~~~f~~~~~-------~~~fp~~~d~~~~~~~~~~~~~~~~~~~--~-~~p~~~~~tflID~~G~v~~~~~g~----~~~ 142 (153)
T TIGR02540 77 IESFARRNY-------GVTFPMFSKIKILGSEAEPAFRFLVDSS--K-KEPRWNFWKYLVNPEGQVVKFWRPE----EPV 142 (153)
T ss_pred HHHHHHHhc-------CCCCCccceEecCCCCCCcHHHHHHhcC--C-CCCCCccEEEEEcCCCcEEEEECCC----CCH
Confidence 8999975 5 7899999772 22222 23333211 1 2455 99999999999998654 345
Q ss_pred HHHHHHHHHH
Q 024201 226 DETLRTLQAL 235 (271)
Q Consensus 226 ~e~l~~l~~l 235 (271)
+++.+.|+.+
T Consensus 143 ~~l~~~i~~l 152 (153)
T TIGR02540 143 EEIRPEITAL 152 (153)
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=153.50 Aligned_cols=147 Identities=33% Similarity=0.526 Sum_probs=133.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+.+|||+|. |++|+.|+|.++.|+++||++|||+.-.|.|..+...+.+.|+++++.+.+|+++|.|+...++
T Consensus 63 v~~Gd~iPD~tL~---dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqK 139 (211)
T KOG0855|consen 63 VNKGDAIPDFTLK---DEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQK 139 (211)
T ss_pred eecCCcCCCcccc---cCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHH
Confidence 7899999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC-CCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD-QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~-~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+|...+ +++|.+|+|+.+++.+.+|+..+. .|...+..||+|++|....+.......+.++++.++.|.+
T Consensus 140 aF~sKq-------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~ 210 (211)
T KOG0855|consen 140 AFASKQ-------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA 210 (211)
T ss_pred Hhhhhc-------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence 999988 899999999999999999999754 4457899999999888777765666778889998887753
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=151.26 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=100.4
Q ss_pred CCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC-CCHHHHHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST-DSVFSHLAWV 160 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~-d~~~~~~~~~ 160 (271)
+++|+|+++++.+ +++.+++++++|+ ++||+|| ++|||.|+.++|.|.++++++ +++||+|+. ++.+.+++|.
T Consensus 1 ~~~p~f~~~~~~g-~~~~~~~~~~~gk-~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~ 74 (127)
T cd03010 1 KPAPAFSLPALPG-PDKTLTSADLKGK-PYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWL 74 (127)
T ss_pred CCCCCcccccccC-CCccccHHHcCCC-EEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHH
Confidence 3689999985433 2378999999998 8999999 999999999999999988764 599999997 4567778888
Q ss_pred HHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 161 QTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 161 ~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
+.+ ++.|+ ++.|.++++++.|++. .+|++||||++|+|++++.+.
T Consensus 75 ~~~-------~~~~~~~~~D~~~~~~~~~~v~------~~P~~~~ld~~G~v~~~~~G~ 120 (127)
T cd03010 75 ARH-------GNPYAAVGFDPDGRVGIDLGVY------GVPETFLIDGDGIIRYKHVGP 120 (127)
T ss_pred Hhc-------CCCCceEEECCcchHHHhcCCC------CCCeEEEECCCceEEEEEecc
Confidence 876 66775 6689999999999999 899999999999999997654
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=158.78 Aligned_cols=132 Identities=19% Similarity=0.264 Sum_probs=105.4
Q ss_pred CCCCCCCCCeEEeeecCCCce--eEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-H
Q 024201 78 PLVGNTAPDFAAEAVFDQEFI--NVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-V 153 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~--~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~ 153 (271)
..+|+++|+|++++ .+|+ .++++++ +|| ++||+|| ++|||+|+.++|.+.++++ +|+++|+|+.++ .
T Consensus 34 ~~vG~~ap~f~l~~---~~G~~~~~~~~~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 34 ALIGKPVPAFPLAA---LREPLQAYTPEAFIQGK-PVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQS 104 (173)
T ss_pred hhcCCCCCCccccc---cCCCCcccCHHHhcCCC-EEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCCh
Confidence 45899999999984 4444 5666776 566 9999999 9999999999999877653 489999999864 4
Q ss_pred HHHHHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
++..+|.+++ +++|+ ++.|.++++++.|++. .+|++|+||+||+|++++.+.. +.+++.+.+
T Consensus 105 ~~~~~~~~~~-------~~~f~~v~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~----~~~~l~~~l 167 (173)
T TIGR00385 105 QNALKFLKEL-------GNPYQAILIDPNGKLGLDLGVY------GAPETFLVDGNGVILYRHAGPL----NNEVWTEGF 167 (173)
T ss_pred HHHHHHHHHc-------CCCCceEEECCCCchHHhcCCe------eCCeEEEEcCCceEEEEEeccC----CHHHHHHHH
Confidence 5567888877 67887 5689999999999998 7899999999999999986642 345555555
Q ss_pred HHH
Q 024201 233 QAL 235 (271)
Q Consensus 233 ~~l 235 (271)
+++
T Consensus 168 ~~~ 170 (173)
T TIGR00385 168 LPA 170 (173)
T ss_pred HHH
Confidence 543
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=145.34 Aligned_cols=110 Identities=18% Similarity=0.302 Sum_probs=95.5
Q ss_pred CCeEEeeecCCCceeEeccccc-CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHh
Q 024201 85 PDFAAEAVFDQEFINVKLSDYI-GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~-gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~ 163 (271)
|+|++. +.+|+.++|++++ || ++||+|| ++||++|+.++|.|.++++++++ ++.+++|+.++.+...+|.+++
T Consensus 1 p~f~l~---~~~G~~~~l~~~~~gk-~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~ 74 (114)
T cd02967 1 PTFDLT---TIDGAPVRIGGISPGR-PTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKH 74 (114)
T ss_pred CCceee---cCCCCEEEcccccCCC-eEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHh
Confidence 789998 6677899999998 87 9999999 99999999999999999888754 6899988877778888899987
Q ss_pred hhcCCCCCc-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 164 RKSGGLGDL-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 164 ~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
++ .||++. +.++.+.|++. .+|++||||++|+|+++.
T Consensus 75 -------~~~~~p~~~--~~~~~~~~~~~------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 75 -------GLEAFPYVL--SAELGMAYQVS------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred -------CCCCCcEEe--cHHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence 55 478776 35789999998 899999999999999874
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=150.57 Aligned_cols=121 Identities=20% Similarity=0.331 Sum_probs=102.9
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCC-hHHHHHHHHHHHHHHHhcC---cEEEEEeCCC----HH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFV-CPTEITAFSDRYTEFEKLN---TEILGVSTDS----VF 154 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~-C~~~l~~L~~~~~~~~~~g---v~vv~VS~d~----~~ 154 (271)
.+|+|++. +.+|+.+++.+++|| ++||+|| ++||+. |..+++.|++++++++++| +++|+|+.|+ ++
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk-~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~ 75 (142)
T cd02968 1 IGPDFTLT---DQDGRPVTLSDLKGK-PVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPE 75 (142)
T ss_pred CCCceEEE---cCCCCEEchHHhCCC-EEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHH
Confidence 47999998 677889999999998 9999999 899997 9999999999999998865 9999999864 46
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCC---hHHHHHhCCccCCC-------Cc-cceEEEEEcCCCcEEEEE
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADIT---KSISKSYGVLIPDQ-------GI-ALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~---~~~~~~ygv~~~~~-------g~-~~P~~~lID~~G~V~~~~ 215 (271)
.+++|.+++ +.+|+++.|.+ ..+++.||+..... ++ +.|.+||||++|+|++.+
T Consensus 76 ~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 76 VLKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 677888887 67899999875 78999999874321 11 467899999999999985
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-21 Score=152.78 Aligned_cols=102 Identities=12% Similarity=0.218 Sum_probs=85.5
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-------CcEEEEEeCCCHH-HHHHHHHHhhhcCCCC
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-------NTEILGVSTDSVF-SHLAWVQTDRKSGGLG 170 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-------gv~vv~VS~d~~~-~~~~~~~~~~~~~~~~ 170 (271)
.++|++|+|| +++|+|| ++|||+|+.++|.|.++|++++++ +++||+||.|... ..++|.+++
T Consensus 17 ~~~ls~~kgk-~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------- 87 (146)
T cd03008 17 REIVARLENR-VLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------- 87 (146)
T ss_pred cccHHHhCCC-EEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence 5688999998 9999999 999999999999999999988754 6999999998643 456777776
Q ss_pred Ccccc---eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 171 DLKYP---LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 171 ~~~f~---~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
++.|+ +..+.+..+++.|++. .+|++||||++|+|+...
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~v~------~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFSVE------ELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCCceeecccchHHHHHHHHcCCC------CCCEEEEECCCCcEEeeC
Confidence 54553 3333346899999998 899999999999999983
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=170.91 Aligned_cols=132 Identities=17% Similarity=0.263 Sum_probs=109.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-----
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS----- 152 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~----- 152 (271)
+.+++.+|+|++. +.+|+.+.++ +|| ++||+|| ++||++|+.++|.|.+++++++.++++||+|+.+.
T Consensus 32 ~~~~~~lP~f~l~---D~dG~~v~ls--kGK-pVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~ 104 (521)
T PRK14018 32 ATVPHTLSTLKTA---DNRPASVYLK--KDK-PTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEK 104 (521)
T ss_pred ccccCCCCCeEee---cCCCceeecc--CCC-EEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccc
Confidence 5678899999998 7888899998 787 9999999 99999999999999999999988889999998732
Q ss_pred -HHHHHHHHHHhhhcCCCCCc-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 153 -VFSHLAWVQTDRKSGGLGDL-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
..+..+|.+.+ ++ .|+++.|.+.++++.|++. .+|++||||++|+|+....+.. ..+++.+
T Consensus 105 ~~~~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~----~~eeL~a 167 (521)
T PRK14018 105 KDGDFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSI----SEAQALA 167 (521)
T ss_pred cHHHHHHHHHhC-------CCcccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCC----CHHHHHH
Confidence 23345555543 33 6789999999999999999 8999999999999999987653 3455555
Q ss_pred HHH
Q 024201 231 TLQ 233 (271)
Q Consensus 231 ~l~ 233 (271)
.|+
T Consensus 168 ~Ie 170 (521)
T PRK14018 168 LIR 170 (521)
T ss_pred HHH
Confidence 555
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=135.68 Aligned_cols=112 Identities=28% Similarity=0.496 Sum_probs=101.1
Q ss_pred CeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--HHHHHHHHHHh
Q 024201 86 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--VFSHLAWVQTD 163 (271)
Q Consensus 86 df~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--~~~~~~~~~~~ 163 (271)
+|++. +.+|+.+++.+++|+ ++||+|| ++||+.|...++.|.++.+++++.++.+++|+.|. .+..++|.+.+
T Consensus 1 ~~~~~---~~~g~~~~~~~~~~k-~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~ 75 (116)
T cd02966 1 DFSLP---DLDGKPVSLSDLKGK-VVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY 75 (116)
T ss_pred Ccccc---CCCCCEeehHHcCCC-EEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc
Confidence 35665 567779999999987 8999999 89999999999999999999987789999999998 78888888887
Q ss_pred hhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 164 RKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 164 ~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
+.+|+++.|.+.++.+.|++. ..|.++|+|++|+|++.+
T Consensus 76 -------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 76 -------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred -------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEe
Confidence 689999999999999999998 899999999999999875
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=147.05 Aligned_cols=142 Identities=12% Similarity=0.167 Sum_probs=108.9
Q ss_pred CCCCCCCCCeEEeee-------cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEE-----
Q 024201 78 PLVGNTAPDFAAEAV-------FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEI----- 145 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~-------~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~v----- 145 (271)
+.+|+.+|..++.+- ++-+.+.++.++++|| +.||+|| |+||+.|+.+.|.|.++ +++|+.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GK-V~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGK-VRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCC-EEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 567888888876521 1224468899999999 8999999 99999999999999988 5568989
Q ss_pred -EEEeCCCH-HHHHHHHHHhhhcCCCCCcccc---eEEcCChHHHHHhCCccCCCCccceEE-EEEcCCCcEEEEEeccC
Q 024201 146 -LGVSTDSV-FSHLAWVQTDRKSGGLGDLKYP---LIADITKSISKSYGVLIPDQGIALRGL-FIIDKEGVIQHSTINNL 219 (271)
Q Consensus 146 -v~VS~d~~-~~~~~~~~~~~~~~~~~~~~f~---~l~D~~~~~~~~ygv~~~~~g~~~P~~-~lID~~G~V~~~~~~~~ 219 (271)
++|+.|+. .....|.+.+.+.. +..|| ++.|.++.+...||+. ..|++ ||||++|+|++++.+..
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~---~~~~P~~~vllD~~g~v~~~~gv~------~~P~T~fVIDk~GkVv~~~~G~l 167 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKG---KKENPWSQVVLDDKGAVKNAWQLN------SEDSAIIVLDKTGKVKFVKEGAL 167 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHh---cccCCcceEEECCcchHHHhcCCC------CCCceEEEECCCCcEEEEEeCCC
Confidence 99999863 34455666554443 45666 9999999999999999 88888 89999999999987754
Q ss_pred CCCCCHHHHHHHHHHH
Q 024201 220 AIGRSVDETLRTLQAL 235 (271)
Q Consensus 220 ~~~~~~~e~l~~l~~l 235 (271)
..+ .+++++..|+++
T Consensus 168 ~~e-e~e~~~~li~~l 182 (184)
T TIGR01626 168 SDS-DIQTVISLVNGL 182 (184)
T ss_pred CHH-HHHHHHHHHHHH
Confidence 322 345566666554
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=143.58 Aligned_cols=139 Identities=10% Similarity=0.158 Sum_probs=102.1
Q ss_pred CCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------CH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SV 153 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~~ 153 (271)
+.+++|++. +.+|+.++|++|+|| ++||+|| ++||+.|. +++.|++++++|+++|++||+|++| +.
T Consensus 3 ~~~~~f~~~---~~~G~~v~Ls~~~GK-vvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~ 76 (183)
T PRK10606 3 DSILTTVVT---TIDGEVTTLEKYAGN-VLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSD 76 (183)
T ss_pred CCccCcEeE---CCCCCEEeHHHhCCC-EEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCH
Confidence 358999998 667789999999998 8999999 99999995 7999999999999999999999984 56
Q ss_pred HHHHHHHH-HhhhcCCCCCcccceEEcC--C----hHHHHHhCCccC------------------------CCCccceEE
Q 024201 154 FSHLAWVQ-TDRKSGGLGDLKYPLIADI--T----KSISKSYGVLIP------------------------DQGIALRGL 202 (271)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~f~~l~D~--~----~~~~~~ygv~~~------------------------~~g~~~P~~ 202 (271)
+++++|++ .+ +++||++.+. + ..+.+-+.-..+ ..-.+..+.
T Consensus 77 ~ei~~f~~~~~-------g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~K 149 (183)
T PRK10606 77 EEIKTYCRTTW-------GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEK 149 (183)
T ss_pred HHHHHHHHHcc-------CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEE
Confidence 77888887 45 7899999444 3 223332210000 000156789
Q ss_pred EEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 203 FIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 203 ~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
||||++|+++.++-.. +.....++.+.|+.+
T Consensus 150 FLv~~~G~vv~r~~~~--~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 150 FLVGRDGQVIQRFSPD--MTPEDPIVMESIKLA 180 (183)
T ss_pred EEECCCCcEEEEECCC--CCCCHHHHHHHHHHH
Confidence 9999999999996433 222334466666654
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=135.94 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=95.8
Q ss_pred CCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--HHHHHHHHHH
Q 024201 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--VFSHLAWVQT 162 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--~~~~~~~~~~ 162 (271)
|+|++. +.+|+.+++.+++|+ ++||+|| ++||+.|+.+++.|++++++ +++++|+.|+ .+.+.+|.++
T Consensus 1 p~f~l~---~~~g~~~~~~~~~~k-~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~ 70 (123)
T cd03011 1 PLFTAT---TLDGEQFDLESLSGK-PVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQK 70 (123)
T ss_pred CCceee---cCCCCEeeHHHhCCC-EEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHH
Confidence 789998 666779999999997 8999999 99999999999999999876 6678887764 5777888888
Q ss_pred hhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 163 DRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
+ +++|+++.|.+.++.+.|++. ..|+++|||++| |+++..+
T Consensus 71 ~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~g 111 (123)
T cd03011 71 K-------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTTG 111 (123)
T ss_pred c-------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEec
Confidence 7 679999999999999999998 899999999999 8888654
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=176.82 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=112.9
Q ss_pred CCCCCCCCCeEEeeecCCCceeEec-ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC---CC-
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKL-SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST---DS- 152 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~L-sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~---d~- 152 (271)
..+|+++|+|..... ..+|+++++ ++++|| ++||+|| ++||++|+.++|.|++++++|+++++.||+|+. |.
T Consensus 391 ~~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK-~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~ 467 (1057)
T PLN02919 391 KKTATKVPEFPPKLD-WLNTAPLQFRRDLKGK-VVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE 467 (1057)
T ss_pred cccCCcCCCCccccc-ccCCccccchhhcCCC-EEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc
Confidence 557999999998632 245678998 689998 9999999 999999999999999999999988999999974 32
Q ss_pred --HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 153 --VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 153 --~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
.+..++|.+++ +++||++.|.+.++++.|++. .+|++||||++|+|+.+..+. ...+++.+
T Consensus 468 ~~~~~~~~~~~~~-------~i~~pvv~D~~~~~~~~~~V~------~iPt~ilid~~G~iv~~~~G~----~~~~~l~~ 530 (1057)
T PLN02919 468 KDLEAIRNAVLRY-------NISHPVVNDGDMYLWRELGVS------SWPTFAVVSPNGKLIAQLSGE----GHRKDLDD 530 (1057)
T ss_pred ccHHHHHHHHHHh-------CCCccEEECCchHHHHhcCCC------ccceEEEECCCCeEEEEEecc----cCHHHHHH
Confidence 23345555555 789999999999999999998 899999999999999996553 23455555
Q ss_pred HHHHH
Q 024201 231 TLQAL 235 (271)
Q Consensus 231 ~l~~l 235 (271)
.|+.+
T Consensus 531 ~l~~~ 535 (1057)
T PLN02919 531 LVEAA 535 (1057)
T ss_pred HHHHH
Confidence 55544
|
|
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=136.80 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=85.2
Q ss_pred eeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCH-HHHHHHHHHhhhcCCCCCccc
Q 024201 98 INVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSV-FSHLAWVQTDRKSGGLGDLKY 174 (271)
Q Consensus 98 ~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~-~~~~~~~~~~~~~~~~~~~~f 174 (271)
+++++++++|| ++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|.. ....+|.+++ + .|
T Consensus 8 ~~v~l~~~~Gk-~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~-------~-~~ 77 (132)
T cd02964 8 GVVPVSALEGK-TVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM-------P-PW 77 (132)
T ss_pred ccccHHHhCCC-EEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------C-Ce
Confidence 69999999998 8999999 999999999999999999999875 799999999864 4556777765 2 33
Q ss_pred ceEE--c--CChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 175 PLIA--D--ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 175 ~~l~--D--~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
..+. | ....+++.|++. .+|+++|||++|+|++..
T Consensus 78 ~~~~~~d~~~~~~~~~~~~v~------~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 78 LAVPFEDEELRELLEKQFKVE------GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred EeeccCcHHHHHHHHHHcCCC------CCCEEEEECCCCCEEchh
Confidence 3332 2 235788899998 899999999999999874
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=137.71 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=86.9
Q ss_pred CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCHHHHHHHHHHhhhcCCCCC
Q 024201 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSVFSHLAWVQTDRKSGGLGD 171 (271)
Q Consensus 94 ~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~ 171 (271)
+.+|+.++|++++|| ++||+|| ++||+.|+.++|.|++++++++++ +++|++|+.|... ..|.+.+.+.. ...
T Consensus 5 ~~~G~~v~l~~~~gk-~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~~-~~~ 79 (131)
T cd03009 5 RNDGGKVPVSSLEGK-TVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--ESFNDYFSKMP-WLA 79 (131)
T ss_pred ccCCCCccHHHhCCc-EEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHcCC-eeE
Confidence 678889999999998 8999999 899999999999999999999865 7999999998643 34444432211 111
Q ss_pred cccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 172 LKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 172 ~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
++|.. .|....+++.||+. .+|+++|||++|+|+...
T Consensus 80 ~~~~~-~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 80 VPFSD-RERRSRLNRTFKIE------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred cccCC-HHHHHHHHHHcCCC------CCCEEEEECCCCCEEccc
Confidence 22221 24457899999998 899999999999999874
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=135.18 Aligned_cols=120 Identities=9% Similarity=0.090 Sum_probs=93.9
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
.+....|+|++. +|+.+++++++ ||+|| ++|||+|+.++|.|+++++++ |++|++|+.|...
T Consensus 50 ~~~~~~~~f~l~-----dG~~v~lsd~~-----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~---- 111 (181)
T PRK13728 50 TEKPAPRWFRLS-----NGRQVNLADWK-----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG---- 111 (181)
T ss_pred cCCCCCCccCCC-----CCCEeehhHce-----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC----
Confidence 456678899984 67899999997 77899 999999999999999999997 6999999988521
Q ss_pred HHHHhhhcCCCCCcccceEEc-CChHHHHHhCCccCCCCccceEEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHHHHHH
Q 024201 159 WVQTDRKSGGLGDLKYPLIAD-ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQH-STINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D-~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~-~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
...||++.| ..+.+.+.||+... .+|++||||++|++++ .+.+.. +.+++.+.++.+.
T Consensus 112 ------------~~~fPv~~dd~~~~~~~~~g~~~~----~iPttfLId~~G~i~~~~~~G~~----~~~~L~~~I~~ll 171 (181)
T PRK13728 112 ------------DTAFPEALPAPPDVMQTFFPNIPV----ATPTTFLVNVNTLEALPLLQGAT----DAAGFMARMDTVL 171 (181)
T ss_pred ------------CCCCceEecCchhHHHHHhCCCCC----CCCeEEEEeCCCcEEEEEEECCC----CHHHHHHHHHHHH
Confidence 358899985 56778889995111 7899999999999975 565542 3456666666553
|
|
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-16 Score=122.25 Aligned_cols=135 Identities=28% Similarity=0.544 Sum_probs=116.6
Q ss_pred eeecccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE
Q 024201 69 VVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (271)
Q Consensus 69 ~~~~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 148 (271)
.++..+.. +++|+++|+|++. +.+.+.++|.++.|| ..||..+|.--.|+|..+...+++...++. ++.++.|
T Consensus 10 pv~l~g~~-~~vGd~ap~ftl~---~~dL~~v~l~~~~gk-~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~I 82 (158)
T COG2077 10 PVTLKGNE-PQVGDKAPDFTLV---GKDLNDVSLADFAGK-KKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCI 82 (158)
T ss_pred eEEecCCC-CccCCcCCceEEE---cCcccceeccccCCc-eEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEE
Confidence 34455566 8999999999998 778889999999999 677888888889999999999999998887 6999999
Q ss_pred eCCCHHHHHHHHHHhhhcCCCCCcccceEEcC-ChHHHHHhCCccCCC---CccceEEEEEcCCCcEEEEEe
Q 024201 149 STDSVFSHLAWVQTDRKSGGLGDLKYPLIADI-TKSISKSYGVLIPDQ---GIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 149 S~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~-~~~~~~~ygv~~~~~---g~~~P~~~lID~~G~V~~~~~ 216 (271)
|.|-++.+.+|+..+ |+. +...++|. +.++.+.||+...+. |+.-++.|++|.+|+|+|..+
T Consensus 83 S~DLPFAq~RfC~ae----Gi~--nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 83 SMDLPFAQKRFCGAE----GIE--NVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred eCCChhHHhhhhhhc----Ccc--cceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 999999999999998 443 36678876 477999999998764 788899999999999999965
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=117.55 Aligned_cols=91 Identities=24% Similarity=0.473 Sum_probs=70.9
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC---Ch
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI---TK 182 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~-~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~---~~ 182 (271)
|| +++|+|| ++||+.|..++|.|.+++++++ +.++++|+|+.|.. ..+|.+...+. +.+|..+... ..
T Consensus 1 gK-~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GK-PVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED--EEEWKKFLKKN----NFPWYNVPFDDDNNS 72 (95)
T ss_dssp TS-EEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS--HHHHHHHHHTC----TTSSEEEETTTHHHH
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC--HHHHHHHHHhc----CCCceEEeeCcchHH
Confidence 56 9999999 9999999999999999999999 66899999999863 33444444322 3455555443 47
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcE
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVI 211 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V 211 (271)
++.+.|++. .+|+++|||++|+|
T Consensus 73 ~l~~~~~i~------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGIN------GIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-T------SSSEEEEEETTSBE
T ss_pred HHHHHCCCC------cCCEEEEECCCCCC
Confidence 899999999 89999999999997
|
... |
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-16 Score=120.75 Aligned_cols=148 Identities=24% Similarity=0.407 Sum_probs=114.8
Q ss_pred CCCCCCCCCeEEeeecCCC----ceeEecccccCCcEEEEEEecCCCCCChHH-HHHHHHHHHHHHHhcCcE-EEEEeCC
Q 024201 78 PLVGNTAPDFAAEAVFDQE----FINVKLSDYIGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEFEKLNTE-ILGVSTD 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~----g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~-~l~~L~~~~~~~~~~gv~-vv~VS~d 151 (271)
+++|+++|..++.+-...+ -..++..++-..|.|||+-.|+.+.|.|.. ++|.+.+++++|+++||+ |+.||+|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 6799999999998542211 246677776443479999999999999985 899999999999999995 6679999
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC----c-cceEEEEEcCCCcEEEEEeccCCC---CC
Q 024201 152 SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG----I-ALRGLFIIDKEGVIQHSTINNLAI---GR 223 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g----~-~~P~~~lID~~G~V~~~~~~~~~~---~~ 223 (271)
+.+.+.+|.+.. +..+ +..++.|.++++++.+|+..+..+ . ..++..|| +||+|.+.++.+... ..
T Consensus 83 D~FVm~AWak~~----g~~~-~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p~~~~~vS 156 (165)
T COG0678 83 DAFVMNAWAKSQ----GGEG-NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPPGDPFTVS 156 (165)
T ss_pred cHHHHHHHHHhc----CCCc-cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCCCCceeec
Confidence 999999999988 3322 678999999999999999876532 2 35677777 799999998876332 23
Q ss_pred CHHHHHHH
Q 024201 224 SVDETLRT 231 (271)
Q Consensus 224 ~~~e~l~~ 231 (271)
+++.+|+.
T Consensus 157 ~a~~mL~~ 164 (165)
T COG0678 157 SADTMLAQ 164 (165)
T ss_pred CHHHHHhc
Confidence 45555543
|
|
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-16 Score=128.24 Aligned_cols=128 Identities=23% Similarity=0.322 Sum_probs=95.2
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCH---
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEKL--NTEILGVSTDSV--- 153 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~--- 153 (271)
.....|+|+|. |++|+.+++++++|| ++||+|. .+.|| .|+..+..|.++++++.++ .+++|.||+|+.
T Consensus 28 ~~~~~~~f~L~---d~~G~~~~~~~~~Gk-~~lv~F~-yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DT 102 (174)
T PF02630_consen 28 NPRIVPDFTLT---DQDGKTVTLDDLKGK-WVLVFFG-YTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDT 102 (174)
T ss_dssp TSCSSST-EEE---ETTSSEEEGGGGTTS-EEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-
T ss_pred CCccCCCcEEE---cCCCCEecHHHhCCC-eEEEEEE-EcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCC
Confidence 34567899998 889999999999999 8888888 78897 7999999999999999864 699999999864
Q ss_pred -HHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC------CC----ccceEEEEEcCCCcEEEEEe
Q 024201 154 -FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD------QG----IALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 154 -~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~------~g----~~~P~~~lID~~G~V~~~~~ 216 (271)
+.+++|.+.+ +..-..|....+.-.++++.|++.... .+ .|...+||||++|+|+..+.
T Consensus 103 p~~L~~Y~~~~----~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 103 PEVLKKYAKKF----GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHCH----TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHhc----CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 4555666655 322223333333347788999977432 11 37789999999999999863
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-15 Score=124.63 Aligned_cols=139 Identities=19% Similarity=0.278 Sum_probs=110.2
Q ss_pred CeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHH---hcCcEEEEEeCCCHHHHHHHHH
Q 024201 86 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFE---KLNTEILGVSTDSVFSHLAWVQ 161 (271)
Q Consensus 86 df~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~---~~gv~vv~VS~d~~~~~~~~~~ 161 (271)
+|+|. +++|+.+++.+++|+ ++||+|. .++|| +|+.++..|.++++++. ..+|+++.||+|+..+..+.++
T Consensus 49 ~f~l~---d~~G~~~~~~~l~Gk-~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk 123 (207)
T COG1999 49 DFELT---DQDGKPFTLKDLKGK-PSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLK 123 (207)
T ss_pred ceeee---cCCCCEeeccccCCC-EEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHH
Confidence 89997 999999999999999 8888888 79998 89999999999999998 4468999999998887777777
Q ss_pred Hhhh-cCCCCCcccceEEcC---ChHHHHHhCCccC---CC------CccceEEEEEcCCCcEEEEEeccCCCCCCHHHH
Q 024201 162 TDRK-SGGLGDLKYPLIADI---TKSISKSYGVLIP---DQ------GIALRGLFIIDKEGVIQHSTINNLAIGRSVDET 228 (271)
Q Consensus 162 ~~~~-~~~~~~~~f~~l~D~---~~~~~~~ygv~~~---~~------g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~ 228 (271)
+|.+ .. ...|..+... ..+++++|++... .. -.|.-.+||||++|+++....+. ...+++
T Consensus 124 ~Y~~~~~---~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~----~~~~~i 196 (207)
T COG1999 124 KYAELNF---DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG----EPPEEI 196 (207)
T ss_pred HHhcccC---CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC----CChHHH
Confidence 7765 22 3455555542 3788999999851 11 13678899999999999996443 237888
Q ss_pred HHHHHHHH
Q 024201 229 LRTLQALQ 236 (271)
Q Consensus 229 l~~l~~l~ 236 (271)
++.|+.+.
T Consensus 197 ~~~l~~l~ 204 (207)
T COG1999 197 AADLKKLL 204 (207)
T ss_pred HHHHHHHh
Confidence 88887663
|
|
| >KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=114.09 Aligned_cols=148 Identities=24% Similarity=0.362 Sum_probs=113.8
Q ss_pred CCCCCCCCCCeEEeeecCCC----ceeEecccc-cCCcEEEEEEecCCCCCCh-HHHHHHHHHHHHHHHhcCcE-EEEEe
Q 024201 77 PPLVGNTAPDFAAEAVFDQE----FINVKLSDY-IGKKYVILFFYPLDFTFVC-PTEITAFSDRYTEFEKLNTE-ILGVS 149 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~----g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C-~~~l~~L~~~~~~~~~~gv~-vv~VS 149 (271)
.+.+|+.+|+-++...++.. +.+++++++ +|| .+||+-.|+.+.|.| ..++|.+.+..+||+.+||+ |+.||
T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GK-KvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGK-KVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred cccccCccccccchhhccCccccccceEEhHHhcCCc-eEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 37899999994433222322 238899886 665 799999999999997 58899999999999999996 66699
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC----CccceEEEEEcCCCcEEEEEeccCCCC---
Q 024201 150 TDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ----GIALRGLFIIDKEGVIQHSTINNLAIG--- 222 (271)
Q Consensus 150 ~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~----g~~~P~~~lID~~G~V~~~~~~~~~~~--- 222 (271)
+|+++.+.+|.+.+.+ +-...++.|.++++.+.+|+..+.. |.+..++-++=.||+|...++++.+.+
T Consensus 87 VnDpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE~~g~~~t~ 161 (171)
T KOG0541|consen 87 VNDPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVEEGGTDFTV 161 (171)
T ss_pred cCcHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEeccCCCceEE
Confidence 9999999999999833 2367799999999999999987642 345555555557999999998766543
Q ss_pred CCHHHHHH
Q 024201 223 RSVDETLR 230 (271)
Q Consensus 223 ~~~~e~l~ 230 (271)
..++.++.
T Consensus 162 ssa~~il~ 169 (171)
T KOG0541|consen 162 SSAEDILK 169 (171)
T ss_pred ecHHHHhh
Confidence 23455544
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=117.33 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=71.6
Q ss_pred ceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccce
Q 024201 97 FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPL 176 (271)
Q Consensus 97 g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~ 176 (271)
|+.+.+++ +.||+|| ++|||+|+.++|.|+++++++ |+.|++|+.|.... ..|+.
T Consensus 44 G~~~~l~~-----~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~----------------~~fp~ 98 (153)
T TIGR02738 44 GRHANQDD-----YALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL----------------TGFPD 98 (153)
T ss_pred chhhhcCC-----CEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc----------------ccccc
Confidence 55666554 4599999 999999999999999999887 68999999886321 13444
Q ss_pred EEcCChHHH-HHh---CCccCCCCccceEEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHHHH
Q 024201 177 IADITKSIS-KSY---GVLIPDQGIALRGLFIIDKEGVIQH-STINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 177 l~D~~~~~~-~~y---gv~~~~~g~~~P~~~lID~~G~V~~-~~~~~~~~~~~~~e~l~~l~~ 234 (271)
..|.+.+.. +.| ++. .+|++||||++|+++. +..+.. +.+++.+.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~v~------~iPTt~LID~~G~~i~~~~~G~~----s~~~l~~~I~~ 151 (153)
T TIGR02738 99 PLPATPEVMQTFFPNPRPV------VTPATFLVNVNTRKAYPVLQGAV----DEAELANRMDE 151 (153)
T ss_pred ccCCchHHHHHHhccCCCC------CCCeEEEEeCCCCEEEEEeeccc----CHHHHHHHHHH
Confidence 444444443 445 666 7999999999988654 444432 34455555543
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=107.67 Aligned_cols=137 Identities=20% Similarity=0.282 Sum_probs=99.7
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------CHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SVF 154 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~~~ 154 (271)
.+.||++. +.+|+.++|++|+|| |||+...|+.|...+ +...|..+|++|+++|+.|+++.+| +.+
T Consensus 4 ~~yd~~~~---~~~G~~~~l~~~~Gk--VlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~e 77 (162)
T COG0386 4 SIYDFSVK---DIDGEPVSLSDYKGK--VLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDE 77 (162)
T ss_pred ccccceee---ccCCCCccHHHhCCc--EEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHH
Confidence 46788888 677789999999999 677777799999988 8999999999999999999999886 446
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCC------hHHHHHhCCccC-----CCCccceEEEEEcCCCcEEEEEeccCCCCC
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADIT------KSISKSYGVLIP-----DQGIALRGLFIIDKEGVIQHSTINNLAIGR 223 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~------~~~~~~ygv~~~-----~~g~~~P~~~lID~~G~V~~~~~~~~~~~~ 223 (271)
++.+|.+.. ++.+||++...+ .-+.+.+--... ..--+..+.||||+||+|+.++-.. .
T Consensus 78 EI~~fC~~~------YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~----t 147 (162)
T COG0386 78 EIAKFCQLN------YGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPK----T 147 (162)
T ss_pred HHHHHHHhc------cCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCC----C
Confidence 777887765 588999987443 122222211110 0112678999999999999997332 2
Q ss_pred CHHHHHHHHHHH
Q 024201 224 SVDETLRTLQAL 235 (271)
Q Consensus 224 ~~~e~l~~l~~l 235 (271)
..+++...|+++
T Consensus 148 ~P~d~~~~Ie~l 159 (162)
T COG0386 148 KPEDIELAIEKL 159 (162)
T ss_pred ChhhHHHHHHHH
Confidence 334444455554
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=102.56 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=76.5
Q ss_pred eEeccc--ccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccce
Q 024201 99 NVKLSD--YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPL 176 (271)
Q Consensus 99 ~v~Lsd--~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~ 176 (271)
...+.+ ..|+ ++||+|| ++||+.|+.+.|.|.++++++.+ ++.|+.|.+|...
T Consensus 10 ~~~~~~a~~~gk-~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~---------------------- 64 (142)
T cd02950 10 STPPEVALSNGK-PTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK---------------------- 64 (142)
T ss_pred cCCHHHHHhCCC-EEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc----------------------
Confidence 344443 3555 8999999 99999999999999999999875 4888888887411
Q ss_pred EEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 177 IADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 177 l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
...+++.|++. .+|+++|+|++|+++....+. ...+++.+.|+.+.
T Consensus 65 ----~~~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G~----~~~~~l~~~l~~l~ 110 (142)
T cd02950 65 ----WLPEIDRYRVD------GIPHFVFLDREGNEEGQSIGL----QPKQVLAQNLDALV 110 (142)
T ss_pred ----cHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCC----CCHHHHHHHHHHHH
Confidence 12467889998 899999999999999987653 23566777777664
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-12 Score=111.91 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=98.1
Q ss_pred CCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHhc-Cc--EEEEEeCCCHHHHHHHH
Q 024201 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEKL-NT--EILGVSTDSVFSHLAWV 160 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~~-gv--~vv~VS~d~~~~~~~~~ 160 (271)
=+|+|. +.+|+.++-.||+|| ++||+|. .++|| .|+.|+..|.+..++++++ |+ .-|+|++|+..+..+-+
T Consensus 120 GpF~L~---d~~Gk~~te~df~Gk-w~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~ 194 (280)
T KOG2792|consen 120 GPFSLV---DHDGKRVTEKDFLGK-WSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVV 194 (280)
T ss_pred CceEEE---ecCCCeecccccccc-eEEEEec-ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHH
Confidence 469997 888999999999999 9999998 89999 8999999999999999865 33 35789998644433333
Q ss_pred HHhhhcCCCCCcccceEEcCChHHHHHhCCccCC------CC---ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 161 QTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD------QG---IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 161 ~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~------~g---~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
.++-+.+...-+.++-..+.-..+++.|.|++.. +. -+.=.+||||++|..+..+-.+ .+.+++.+.
T Consensus 195 ~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN----~~~~~~~~~ 270 (280)
T KOG2792|consen 195 AEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN----YDADELADS 270 (280)
T ss_pred HHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc----CCHHHHHHH
Confidence 3333333322233333334447889999998653 11 1455689999999999875323 455666655
Q ss_pred HH
Q 024201 232 LQ 233 (271)
Q Consensus 232 l~ 233 (271)
|.
T Consensus 271 I~ 272 (280)
T KOG2792|consen 271 IL 272 (280)
T ss_pred HH
Confidence 43
|
|
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-12 Score=101.14 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=91.7
Q ss_pred CCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-------- 152 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-------- 152 (271)
-..+.+|+.. +.+|+.|+|+.|+|| |||+...|+.|.....+..+|..++++|+++|++|+++.+|.
T Consensus 11 ~~siydf~~~---d~~G~~v~l~~yrGk--V~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~ 85 (171)
T KOG1651|consen 11 KGSIYDFSAK---DLDGEYVSLSQYRGK--VVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGS 85 (171)
T ss_pred hcceeeeEEe---cCCCCCccHHHhCCe--EEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCC
Confidence 3467899998 777889999999999 566666699999999999999999999999999999999863
Q ss_pred HHHHHHHHHHhhhcCCCCCcccceEEcC--Ch-HHHHHhCCccCCC------C-ccceEEEEEcCCCcEEEEEec
Q 024201 153 VFSHLAWVQTDRKSGGLGDLKYPLIADI--TK-SISKSYGVLIPDQ------G-IALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~f~~l~D~--~~-~~~~~ygv~~~~~------g-~~~P~~~lID~~G~V~~~~~~ 217 (271)
..++..+.+.. .+..|+++... ++ .....|....... + .+..+.||||+||+|+.++-.
T Consensus 86 n~Ei~~f~~~r------~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 86 NEEILNFVKVR------YGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred cHHHHHHHHhc------cCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence 34555565522 25677777533 21 1122222222111 1 167899999999999999743
|
|
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-12 Score=100.22 Aligned_cols=107 Identities=23% Similarity=0.298 Sum_probs=84.4
Q ss_pred CCCceeEecc-cccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCH-HHHHHHHHHhhhcCCC
Q 024201 94 DQEFINVKLS-DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSV-FSHLAWVQTDRKSGGL 169 (271)
Q Consensus 94 ~~~g~~v~Ls-d~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~-~~~~~~~~~~~~~~~~ 169 (271)
+.+|..+-.+ .+.|| .+.++|- +.|||+|+.-.|.|.++|+++++. .++||.||.|.. +++..+.+.+
T Consensus 19 ~~~~~~~~~~~~l~gK-vV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~------ 90 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGK-VVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH------ 90 (157)
T ss_pred ccCCccchHhHhhCCc-EEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc------
Confidence 5666677776 68887 5555555 999999999999999999999875 399999999864 4556666665
Q ss_pred CCcccceEE---cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 170 GDLKYPLIA---DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 170 ~~~~f~~l~---D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
...|..+. +...++.+.|++. .+|...++.+||+++...
T Consensus 91 -~~~W~~iPf~d~~~~~l~~ky~v~------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 -HGDWLAIPFGDDLIQKLSEKYEVK------GIPALVILKPDGTVVTED 132 (157)
T ss_pred -CCCeEEecCCCHHHHHHHHhcccC------cCceeEEecCCCCEehHh
Confidence 34555554 3348889999999 899999999999998874
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.8e-12 Score=110.99 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=87.1
Q ss_pred CCCCeEEeeecC--CCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHH
Q 024201 83 TAPDFAAEAVFD--QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWV 160 (271)
Q Consensus 83 ~~Pdf~l~~~~~--~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~ 160 (271)
+.+.+......+ ...+...+++++|+ ++||+|| ++||++|+.+.|.|+++++++ |+.|++|++|....
T Consensus 140 P~~~~a~~~~~~~~~~~~~~~l~~l~~k-~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~----- 209 (271)
T TIGR02740 140 PVSTLALDAHDTTAKKQKDRVMKDLAKK-SGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL----- 209 (271)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCC-eEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc-----
Confidence 455555543322 23345788999998 9999999 899999999999999999887 69999999986321
Q ss_pred HHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 161 QTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE-GVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 161 ~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~-G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
..|+.. +.+..+++.||+. .+|++||+|++ |+|..+..+. -..+++.+.+..+
T Consensus 210 -----------~~fp~~-~~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~----~s~~eL~~~i~~~ 263 (271)
T TIGR02740 210 -----------PGFPNA-RPDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGV----MSADELVDRILLA 263 (271)
T ss_pred -----------ccCCcc-cCCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 124444 4456789999998 89999999996 5554444332 2456666665533
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=91.72 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=68.6
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
++.+|+ ++||.|| ++||++|+.+.|.|.++++++ .++.++.|+.|.... ..
T Consensus 11 ~~~~~k-~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~-------------------------~~ 61 (103)
T cd02985 11 KKAKGR-LVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDS-------------------------TM 61 (103)
T ss_pred HHcCCC-EEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChH-------------------------HH
Confidence 334566 9999999 999999999999999999998 478888898875211 13
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
++++.|++. .+|+++++ +||+++....+ ...+++.+.+
T Consensus 62 ~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~~ 99 (103)
T cd02985 62 ELCRREKII------EVPHFLFY-KDGEKIHEEEG-----IGPDELIGDV 99 (103)
T ss_pred HHHHHcCCC------cCCEEEEE-eCCeEEEEEeC-----CCHHHHHHHH
Confidence 677889998 89986666 89999988754 3345555554
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=87.42 Aligned_cols=88 Identities=14% Similarity=0.227 Sum_probs=69.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.|+ ++||.|| ++||+.|+...|.+.++.+++++.++.++.|.+|. +..++
T Consensus 23 ~~~-~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----------------------------~~~l~ 72 (111)
T cd02963 23 FKK-PYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----------------------------ERRLA 72 (111)
T ss_pred CCC-eEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----------------------------cHHHH
Confidence 556 9999999 99999999999999999999987678887776652 24678
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+.||+. .+|+++++ ++|+++....+. ...+++.+.|+.
T Consensus 73 ~~~~V~------~~Pt~~i~-~~g~~~~~~~G~----~~~~~l~~~i~~ 110 (111)
T cd02963 73 RKLGAH------SVPAIVGI-INGQVTFYHDSS----FTKQHVVDFVRK 110 (111)
T ss_pred HHcCCc------cCCEEEEE-ECCEEEEEecCC----CCHHHHHHHHhc
Confidence 899998 89999999 599987775432 345666666554
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=86.18 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=66.4
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|+ ++||+|| ++||++|+...|.|.++++++++..+.++.|..|. .++++
T Consensus 17 ~~-~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~-----------------------------~~~~~ 65 (102)
T cd02948 17 KG-LTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT-----------------------------IDTLK 65 (102)
T ss_pred CC-eEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC-----------------------------HHHHH
Confidence 55 8999999 99999999999999999999875556666665552 24668
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+|++. ..|+++++ ++|+++.+..+ .+.+++++.|+.
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G-----~~~~~~~~~i~~ 101 (102)
T cd02948 66 RYRGK------CEPTFLFY-KNGELVAVIRG-----ANAPLLNKTITE 101 (102)
T ss_pred HcCCC------cCcEEEEE-ECCEEEEEEec-----CChHHHHHHHhh
Confidence 89999 88976666 79999988654 355777777764
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=86.93 Aligned_cols=85 Identities=16% Similarity=0.272 Sum_probs=64.5
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
++++|+ ++||.|| ++||++|+...|.|.+++++++ ++.++.|..+. ...
T Consensus 14 ~~~~g~-~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~---------------------------~~~ 62 (100)
T cd02999 14 AFNRED-YTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS---------------------------IKP 62 (100)
T ss_pred HhcCCC-EEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC---------------------------CCH
Confidence 457888 8999999 9999999999999999999986 57777774331 124
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
.+++.|++. ..|++++++ +| .+..+.+. .+.+++.+
T Consensus 63 ~l~~~~~V~------~~PT~~lf~-~g-~~~~~~G~----~~~~~l~~ 98 (100)
T cd02999 63 SLLSRYGVV------GFPTILLFN-ST-PRVRYNGT----RTLDSLAA 98 (100)
T ss_pred HHHHhcCCe------ecCEEEEEc-CC-ceeEecCC----CCHHHHHh
Confidence 788999999 899999996 55 44554332 44555544
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=90.97 Aligned_cols=101 Identities=17% Similarity=0.094 Sum_probs=72.5
Q ss_pred cEEEEEEecCCCCCChHHHHHHHH---HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFS---DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~---~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+++||+|| ++||++|+...+.+. ++.+.++ +++.++.|++|.......+ ........+++
T Consensus 15 k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~---------------~~~~~~~~~l~ 77 (125)
T cd02951 15 KPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDF---------------DGEALSEKELA 77 (125)
T ss_pred CcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeecc---------------CCCCccHHHHH
Confidence 48999999 999999999988875 4555555 3788888988753322211 11112457899
Q ss_pred HHhCCccCCCCccceEEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKE-GVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~-G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.|++. .+|+++++|++ |+++....+. ...+++.+.|+.+.
T Consensus 78 ~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~----~~~~~~~~~l~~~~ 119 (125)
T cd02951 78 RKYRVR------FTPTVIFLDPEGGKEIARLPGY----LPPDEFLAYLEYVQ 119 (125)
T ss_pred HHcCCc------cccEEEEEcCCCCceeEEecCC----CCHHHHHHHHHHHH
Confidence 999998 89999999999 8999886553 23456666666543
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-10 Score=85.67 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=71.8
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++||++|+...|.|.++.+++.+. +.++-|.+|. ..++++.
T Consensus 14 ~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~----------------------------~~~la~~ 63 (114)
T cd02954 14 EKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE----------------------------VPDFNKM 63 (114)
T ss_pred CCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC----------------------------CHHHHHH
Confidence 348999999 999999999999999999998632 5666666653 4679999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCC------CCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG------RSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~------~~~~e~l~~l~~l 235 (271)
|++. .+|+++++ +||+++.+..+..+.. .+-+++++.+..+
T Consensus 64 ~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 64 YELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred cCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 9999 89999988 7999999987644422 3567777777644
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=81.50 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=65.2
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+|+ ++||+|| ++||++|+...|.+.++++.+.+ ++.++.|..+. ..+++
T Consensus 11 ~~~-~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~l~ 59 (96)
T cd02956 11 TQV-PVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA----------------------------QPQIA 59 (96)
T ss_pred CCC-eEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC----------------------------CHHHH
Confidence 355 8999999 99999999999999999998864 46666665542 35788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
+.|++. ..|++++++ +|+++....+. .+.+++.+.|
T Consensus 60 ~~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~l 95 (96)
T cd02956 60 QQFGVQ------ALPTVYLFA-AGQPVDGFQGA----QPEEQLRQML 95 (96)
T ss_pred HHcCCC------CCCEEEEEe-CCEEeeeecCC----CCHHHHHHHh
Confidence 899998 899999996 99988775442 3345554443
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-10 Score=85.95 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=68.2
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHH---HHHhcCcEEEEEeCCCHHHH-HHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYT---EFEKLNTEILGVSTDSVFSH-LAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~---~~~~~gv~vv~VS~d~~~~~-~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
|+ ++||+|| ..|||+|+...+.+.+..+ .++ .++.++.+..+..... .+|.+.. +.. .+.....
T Consensus 5 ~k-~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~ 72 (112)
T PF13098_consen 5 GK-PIVVVFT-DPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNIDDSRDESEAVLDFD-------GQK--NVRLSNK 72 (112)
T ss_dssp SS-EEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESHSHHHHHHHHHSHT-------CHS--SCHHHHH
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecCCcccccccccccc-------cch--hhhHHHH
Confidence 45 8999999 8999999988887776443 332 3688888888775533 4455543 111 1122346
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
++++.||+. .+|+++++|+||+++.+..|- .+.+++++.|
T Consensus 73 ~l~~~~~v~------gtPt~~~~d~~G~~v~~~~G~----~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVN------GTPTIVFLDKDGKIVYRIPGY----LSPEELLKML 112 (112)
T ss_dssp HHHHHTT--------SSSEEEECTTTSCEEEEEESS------HHHHHHHH
T ss_pred HHHHHcCCC------ccCEEEEEcCCCCEEEEecCC----CCHHHHHhhC
Confidence 899999999 899999999999999886543 2345665543
|
... |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=81.93 Aligned_cols=89 Identities=17% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
|+ ++||+|| ++||++|+...+.+ .++.+.+++ ++.++.|.++.... ...+
T Consensus 11 ~k-~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~------------------------~~~~ 63 (104)
T cd02953 11 GK-PVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP------------------------EITA 63 (104)
T ss_pred CC-eEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH------------------------HHHH
Confidence 44 8999999 99999999998877 567777765 78888887653110 1246
Q ss_pred HHHHhCCccCCCCccceEEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDK-EGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~-~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
++++|++. .+|+++++++ +|+++.+..+. .+.+++.+.|
T Consensus 64 ~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~----~~~~~l~~~l 103 (104)
T cd02953 64 LLKRFGVF------GPPTYLFYGPGGEPEPLRLPGF----LTADEFLEAL 103 (104)
T ss_pred HHHHcCCC------CCCEEEEECCCCCCCCcccccc----cCHHHHHHHh
Confidence 78889998 8999999998 89988875443 3455555544
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-09 Score=81.06 Aligned_cols=86 Identities=14% Similarity=0.300 Sum_probs=66.5
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++|||+|+...|.+.++++++.+ ++.++.|..|. ...+++.
T Consensus 21 ~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 70 (109)
T PRK09381 21 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAPK 70 (109)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCC----------------------------ChhHHHh
Confidence 448999999 89999999999999999999875 47777776653 2346788
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
|++. ..|+++++ ++|+++....+. ...+++...|+.
T Consensus 71 ~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~ 106 (109)
T PRK09381 71 YGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA 106 (109)
T ss_pred CCCC------cCCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHH
Confidence 9998 89999888 699999886543 234555555543
|
|
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-09 Score=79.10 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=62.2
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
+.+++++|.|| ++||++|+...|.|.++++++++.+ +.+..+..+. ..+
T Consensus 13 ~~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----------------------------~~~ 63 (104)
T cd03000 13 RKEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----------------------------YSS 63 (104)
T ss_pred ccCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----------------------------CHh
Confidence 34448999999 9999999999999999999997654 4444444331 246
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+++.|++. .+|++++++ +|.+ ..+.+ ....+++.+.++.
T Consensus 64 ~~~~~~I~------~~Pt~~l~~-~~~~-~~~~G----~~~~~~l~~~~~~ 102 (104)
T cd03000 64 IASEFGVR------GYPTIKLLK-GDLA-YNYRG----PRTKDDIVEFANR 102 (104)
T ss_pred HHhhcCCc------cccEEEEEc-CCCc-eeecC----CCCHHHHHHHHHh
Confidence 78899998 899999994 5543 33322 2345666666553
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=8e-09 Score=88.29 Aligned_cols=140 Identities=21% Similarity=0.311 Sum_probs=100.9
Q ss_pred CCCCCCCCCeEEeeecCCCcee-Eecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC----
Q 024201 78 PLVGNTAPDFAAEAVFDQEFIN-VKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD---- 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~-v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d---- 151 (271)
..+|..+||..+.++++. . .++.|| +|+++.||+|..+| ||+-+..+..++++.++|.+. ++++.|-+.
T Consensus 73 a~~G~~APns~vv~l~g~---~~~~ildf~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp 147 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQ---RSCRILDFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP 147 (237)
T ss_pred eeCCCCCCCCceEeeCCC---cceeHHHhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence 568999999999866444 5 899998 77779999999777 999999999999999999862 456555321
Q ss_pred -----------------CHHHHHHHHHHhhhcCCCCCcccceEEcC-ChHHHHHhCCccCCCCccceEEEEEcCCCcEEE
Q 024201 152 -----------------SVFSHLAWVQTDRKSGGLGDLKYPLIADI-TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQH 213 (271)
Q Consensus 152 -----------------~~~~~~~~~~~~~~~~~~~~~~f~~l~D~-~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~ 213 (271)
+.++-..-++...+. ...+|++.|. ++...++||.. .. +.||| +||+|+|
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~----~~~~pi~vD~mdN~~~~~YgA~------Pe-RlyIi-~~gkv~Y 215 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEE----FPQCPIVVDTMDNNFNKAYGAL------PE-RLYII-QDGKVVY 215 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHHhh----CCCCCEEEEccCCHHHHHhCCC------cc-eEEEE-ECCEEEE
Confidence 111111122222211 3578888877 68999999998 33 35677 4999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHH
Q 024201 214 STINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 214 ~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.- +..+.+=+.+|+-+.|+.+
T Consensus 216 ~G-g~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 216 KG-GPGPFGYSPEELREWLEKY 236 (237)
T ss_pred eC-CCCCCcCCHHHHHHHHHhc
Confidence 83 4555666789988888754
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.6e-09 Score=76.96 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=62.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+|+ +||.|| ++||++|+...|.+.+++++++..++.+..|..+. +..++
T Consensus 16 ~~~--~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~~~ 64 (101)
T cd02994 16 EGE--WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----------------------------EPGLS 64 (101)
T ss_pred CCC--EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----------------------------CHhHH
Confidence 454 689999 99999999999999999988765567766665432 34578
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.|++. ..|+++++ ++|++ ..+.+ ....+++.+.++
T Consensus 65 ~~~~i~------~~Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~ 100 (101)
T cd02994 65 GRFFVT------ALPTIYHA-KDGVF-RRYQG----PRDKEDLISFIE 100 (101)
T ss_pred HHcCCc------ccCEEEEe-CCCCE-EEecC----CCCHHHHHHHHh
Confidence 899998 89999887 88986 34333 235566665554
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=80.06 Aligned_cols=108 Identities=9% Similarity=0.109 Sum_probs=77.2
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+.+++||.|| ++||++|+...|.|.++.+++++. +.|+-|.+|. ..+++.
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe----------------------------~~dla~ 71 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE----------------------------VPDFNT 71 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC----------------------------CHHHHH
Confidence 4458999999 999999999999999999998632 5556676653 467889
Q ss_pred HhCCccCCCCccceEEEEEcCCCc-EEEEEeccCC----CCCCHHHHHHHHHHHHHhhhCC--CcccCCCC
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGV-IQHSTINNLA----IGRSVDETLRTLQALQYVQENP--DEVCPAGW 250 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~-V~~~~~~~~~----~~~~~~e~l~~l~~l~~~~~~~--~~~~p~~~ 250 (271)
.|++. ..|+++++=++|+ .+....++.+ .....+++++.++.+..-+.+. -+.||.++
T Consensus 72 ~y~I~------~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~ 136 (142)
T PLN00410 72 MYELY------DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKDY 136 (142)
T ss_pred HcCcc------CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCcc
Confidence 99998 6777775558998 5555444221 2356788889888776554332 34556655
|
|
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=77.83 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=68.0
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++.+|++|+ ++||++|+...|.+.++..+|.+ +.++-|.+|. ..++++.
T Consensus 21 ~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde----------------------------~~~~~~~ 69 (106)
T KOG0907|consen 21 DKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE----------------------------LEEVAKE 69 (106)
T ss_pred CCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc----------------------------CHhHHHh
Confidence 348899998 99999999999999999999984 8888888874 2578899
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
|++. .+|+++++ ++|+.+...++. +.+++.+.+.
T Consensus 70 ~~V~------~~PTf~f~-k~g~~~~~~vGa-----~~~~l~~~i~ 103 (106)
T KOG0907|consen 70 FNVK------AMPTFVFY-KGGEEVDEVVGA-----NKAELEKKIA 103 (106)
T ss_pred cCce------EeeEEEEE-ECCEEEEEEecC-----CHHHHHHHHH
Confidence 9999 89999999 899999997653 4445554443
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.7e-09 Score=81.97 Aligned_cols=86 Identities=13% Similarity=0.222 Sum_probs=67.2
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
..+|||.|| +.||.+|+...|.|.++..+|.. .+++.-|.+|. ..+++..
T Consensus 61 ~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~----------------------------~~ela~~ 110 (150)
T KOG0910|consen 61 DVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDE----------------------------HPELAED 110 (150)
T ss_pred CCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccc----------------------------ccchHhh
Confidence 459999999 99999999999999999999853 36666665553 4678999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
|+|. ..|+++++ +||..+...++. .+.+.+...|+.
T Consensus 111 Y~I~------avPtvlvf-knGe~~d~~vG~----~~~~~l~~~i~k 146 (150)
T KOG0910|consen 111 YEIS------AVPTVLVF-KNGEKVDRFVGA----VPKEQLRSLIKK 146 (150)
T ss_pred ccee------eeeEEEEE-ECCEEeeeeccc----CCHHHHHHHHHH
Confidence 9999 99999999 799999886653 233444444443
|
|
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=76.94 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=71.0
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|+ ++||++|+..-|.|.++.+++++. +.++-|.+|. ..++++.
T Consensus 14 ~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe----------------------------v~dva~~ 63 (114)
T cd02986 14 EKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK----------------------------VPVYTQY 63 (114)
T ss_pred CCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc----------------------------cHHHHHh
Confidence 349999999 999999999999999999999632 6777777763 3578999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCC------CCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG------RSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~------~~~~e~l~~l~~l 235 (271)
|++. ..|+++++ ++|+-....++..+.. .+-+++++.++.+
T Consensus 64 y~I~------amPtfvff-kngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 64 FDIS------YIPSTIFF-FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred cCce------eCcEEEEE-ECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 9998 89999988 7899888877644322 3457777777643
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=80.00 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=65.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++|+|| ++||++|+...+.|.++++++.+ ++.++.|..+ .+.++++.|
T Consensus 53 k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~----------------------------~~~~l~~~~ 102 (139)
T PRK10996 53 LPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTE----------------------------AERELSARF 102 (139)
T ss_pred CeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCC----------------------------CCHHHHHhc
Confidence 48999999 99999999999999999988764 4677666543 235788999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++. .+|+++++ ++|+++....+. ...+++.+.|+.
T Consensus 103 ~V~------~~Ptlii~-~~G~~v~~~~G~----~~~e~l~~~l~~ 137 (139)
T PRK10996 103 RIR------SIPTIMIF-KNGQVVDMLNGA----VPKAPFDSWLNE 137 (139)
T ss_pred CCC------ccCEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHH
Confidence 998 89998877 599999886543 345566666654
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=77.58 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=57.3
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|+ ++||.|| ++||++|+...|.+.++++++.. .+.++.|..|.. .+.++++
T Consensus 18 ~~-~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------~~~~~~~ 68 (109)
T cd03002 18 NY-TTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------KNKPLCG 68 (109)
T ss_pred CC-eEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------ccHHHHH
Confidence 44 7999999 99999999999999999998864 578888877741 1357888
Q ss_pred HhCCccCCCCccceEEEEEcCCCc
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
.|++. ..|+++++++++.
T Consensus 69 ~~~i~------~~Pt~~~~~~~~~ 86 (109)
T cd03002 69 KYGVQ------GFPTLKVFRPPKK 86 (109)
T ss_pred HcCCC------cCCEEEEEeCCCc
Confidence 99999 8999999987773
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-09 Score=77.01 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=58.3
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEK--LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~--~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
+++|.|| ++||++|+...|.+.++++++++ .++.++.|..+. +..+++.
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~~ 68 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----------------------------HRELCSE 68 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----------------------------ChhhHhh
Confidence 5899999 99999999999999999999975 346666665432 2467888
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
|++. ..|+++++ ++|+++..+.+.
T Consensus 69 ~~v~------~~Pt~~~~-~~g~~~~~~~G~ 92 (102)
T cd03005 69 FQVR------GYPTLLLF-KDGEKVDKYKGT 92 (102)
T ss_pred cCCC------cCCEEEEE-eCCCeeeEeeCC
Confidence 9998 89999999 688877765543
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=77.00 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=60.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||++|+...|.|.++.+++.. .+.++-|.+|... . | ..++++.|
T Consensus 15 ~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~-----------------~------d-~~~l~~~~ 68 (103)
T PHA02278 15 KDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAED-----------------V------D-REKAVKLF 68 (103)
T ss_pred CcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccc-----------------c------c-cHHHHHHC
Confidence 38999999 99999999999999999877532 3667778777410 0 1 35689999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. .+|+++++ +||+++.+..+
T Consensus 69 ~I~------~iPT~i~f-k~G~~v~~~~G 90 (103)
T PHA02278 69 DIM------STPVLIGY-KDGQLVKKYED 90 (103)
T ss_pred CCc------cccEEEEE-ECCEEEEEEeC
Confidence 999 89999888 68999998755
|
|
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=77.35 Aligned_cols=87 Identities=11% Similarity=0.216 Sum_probs=64.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.|+ +++|.|| ++||++|+...|.+.++++++++.++.+..|..|.. +..++
T Consensus 20 ~~k-~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---------------------------~~~~~ 70 (109)
T cd02993 20 RNQ-STLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---------------------------QREFA 70 (109)
T ss_pred cCC-CEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---------------------------chhhH
Confidence 355 8999999 999999999999999999999876788888877640 12244
Q ss_pred H-HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 186 K-SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 186 ~-~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
+ .|++. ..|++++++++++....+.++ .++.+.++.
T Consensus 71 ~~~~~v~------~~Pti~~f~~~~~~~~~y~g~---~~~~~~l~~ 107 (109)
T cd02993 71 KEELQLK------SFPTILFFPKNSRQPIKYPSE---QRDVDSLLM 107 (109)
T ss_pred HhhcCCC------cCCEEEEEcCCCCCceeccCC---CCCHHHHHh
Confidence 4 48888 899999998887755553221 246666554
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=74.17 Aligned_cols=72 Identities=10% Similarity=0.241 Sum_probs=58.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++++|| ++||+.|+...+.+.++.+++.+ ++.++.|..|. +.++++.|
T Consensus 14 ~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~----------------------------~~~l~~~~ 63 (97)
T cd02949 14 RLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE----------------------------DQEIAEAA 63 (97)
T ss_pred CeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHHHC
Confidence 48999999 89999999999999999988864 56666666542 34678889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. .+|+.+|++ +|+++....+
T Consensus 64 ~v~------~vPt~~i~~-~g~~v~~~~g 85 (97)
T cd02949 64 GIM------GTPTVQFFK-DKELVKEISG 85 (97)
T ss_pred CCe------eccEEEEEE-CCeEEEEEeC
Confidence 998 899999995 8999887644
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=80.93 Aligned_cols=79 Identities=9% Similarity=0.152 Sum_probs=60.0
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| ++||++|+...|.+.++.+++.+.++.++.|.+|.. .++++.|
T Consensus 48 ~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~----------------------------~~la~~~ 98 (152)
T cd02962 48 VTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF----------------------------PNVAEKF 98 (152)
T ss_pred CEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC----------------------------HHHHHHc
Confidence 38999999 999999999999999999998766789998887651 2455556
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++.....--.+|+++++ ++|+.+.+..+
T Consensus 99 ~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 99 RVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred CceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 65510000048988888 59999998765
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=75.08 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=58.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||.|| ++||+.|+...|.+.++.++++. .+.+..|.+|. +..++
T Consensus 17 ~~~-~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~----------------------------~~~~~ 65 (101)
T cd03003 17 SGE-IWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD----------------------------DRMLC 65 (101)
T ss_pred CCC-eEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc----------------------------cHHHH
Confidence 344 8999999 99999999999999999999874 36777777653 24678
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
+.|++. ..|+++++ ++|+.+..+
T Consensus 66 ~~~~v~------~~Pt~~~~-~~g~~~~~~ 88 (101)
T cd03003 66 RSQGVN------SYPSLYVF-PSGMNPEKY 88 (101)
T ss_pred HHcCCC------ccCEEEEE-cCCCCcccC
Confidence 889998 89999888 789876554
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-08 Score=75.80 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=62.9
Q ss_pred CCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------HHHH
Q 024201 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--------VFSH 156 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--------~~~~ 156 (271)
.+|++. +.+|+.++|++|+|| ++|+...++.|+.-. ++..|++++++|+++|++|+++.+|. .+++
T Consensus 2 Ydf~~~---~~~G~~v~l~~y~Gk--v~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei 75 (108)
T PF00255_consen 2 YDFSAK---DIDGKPVSLSKYKGK--VLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEI 75 (108)
T ss_dssp GGSEEE---BTTSSEEEGGGGTTS--EEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHH
T ss_pred cceeee---CCCCCEECHHHcCCC--EEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHH
Confidence 467777 677789999999999 455555599999999 99999999999999999999998864 3344
Q ss_pred HHHHHHhhhcCCCCCcccceEE
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
+.+.... .+.+|++..
T Consensus 76 ~~~~~~~------~~~~F~vf~ 91 (108)
T PF00255_consen 76 KEFCKEK------FGVTFPVFE 91 (108)
T ss_dssp HHHHCHC------HT-SSEEBS
T ss_pred HHHHHhc------cCCcccceE
Confidence 5555541 155676654
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-08 Score=76.66 Aligned_cols=84 Identities=4% Similarity=-0.003 Sum_probs=62.4
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.+++++||.|| ++||++|+...|.+.++.+++++ .+.++.|.+|. +..++
T Consensus 27 ~~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~----------------------------~~~l~ 76 (113)
T cd03006 27 TDAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWW----------------------------PQGKC 76 (113)
T ss_pred cCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------ChHHH
Confidence 44558999999 99999999999999999999974 36667676653 23455
Q ss_pred -HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 186 -KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 186 -~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
+.|++. ..|+..|+ ++|+....+.+ .+..++++.
T Consensus 77 ~~~~~I~------~~PTl~lf-~~g~~~~~y~G----~~~~~~i~~ 111 (113)
T cd03006 77 RKQKHFF------YFPVIHLY-YRSRGPIEYKG----PMRAPYMEK 111 (113)
T ss_pred HHhcCCc------ccCEEEEE-ECCccceEEeC----CCCHHHHHh
Confidence 578988 89999888 78887655433 234455443
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-08 Score=73.94 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=58.7
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| ++||+.|+...|.+.++.++++. ++.+..|..+. +.++++.|
T Consensus 20 ~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~ 69 (104)
T cd03004 20 EPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK----------------------------YESLCQQA 69 (104)
T ss_pred CeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc----------------------------hHHHHHHc
Confidence 38999999 99999999999999999999853 46676666542 34678889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. ..|++++++++|+.+..+.+
T Consensus 70 ~i~------~~Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 70 NIR------AYPTIRLYPGNASKYHSYNG 92 (104)
T ss_pred CCC------cccEEEEEcCCCCCceEccC
Confidence 998 89999999766587777544
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.3e-08 Score=72.86 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=57.6
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
++ +++|.|| ++||+.|+...+.+.++.+++++. .+.++.|..+. +....+.
T Consensus 17 ~~-~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------------------------~~~~~~~ 68 (104)
T cd02997 17 EK-HVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--------------------------PEHDALK 68 (104)
T ss_pred CC-CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--------------------------CccHHHH
Confidence 44 8999999 999999999999999999998753 35555555442 1245788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
+.||+. ..|+++++ ++|+++....+
T Consensus 69 ~~~~i~------~~Pt~~~~-~~g~~~~~~~g 93 (104)
T cd02997 69 EEYNVK------GFPTFKYF-ENGKFVEKYEG 93 (104)
T ss_pred HhCCCc------cccEEEEE-eCCCeeEEeCC
Confidence 999998 78986655 68998776543
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-08 Score=71.71 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=57.5
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||+.|+...+.|.++.+++ ..++.++.|..+ ...++.+.|
T Consensus 15 ~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~----------------------------~~~~~~~~~ 64 (97)
T cd02984 15 KLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE----------------------------ELPEISEKF 64 (97)
T ss_pred CEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc----------------------------cCHHHHHhc
Confidence 48999999 999999999999999999887 335666666432 135788999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. ..|+++++ ++|+++....+
T Consensus 65 ~i~------~~Pt~~~~-~~g~~~~~~~g 86 (97)
T cd02984 65 EIT------AVPTFVFF-RNGTIVDRVSG 86 (97)
T ss_pred CCc------cccEEEEE-ECCEEEEEEeC
Confidence 998 89998888 58999888644
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-08 Score=77.74 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=56.1
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
+...+| ++||+|| ++||++|+...+.+.+..+... .+..++.|.+|... .
T Consensus 15 A~~~~k-pVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~---------------------------~ 64 (117)
T cd02959 15 AKDSGK-PLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDE---------------------------E 64 (117)
T ss_pred HHHcCC-cEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCC---------------------------C
Confidence 334566 8999999 9999999999999988766543 34566767665311 0
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
...+.|++. |..+|+++++|++|+++...+.
T Consensus 65 ~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 65 PKDEEFSPD----GGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred chhhhcccC----CCccceEEEECCCCCCchhhcc
Confidence 112245554 1138999999999999886543
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=98.79 E-value=5e-08 Score=74.11 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-----CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-----NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-----gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
+++||+|| ++||++|+...|.+.++++++++. .+.+..|.. |.+.+
T Consensus 19 ~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~----------------------------d~~~~ 69 (108)
T cd02996 19 ELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC----------------------------DKESD 69 (108)
T ss_pred CEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC----------------------------CCCHH
Confidence 48999999 999999999999999999888642 133333433 34567
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
++++||+. ..|+++++ ++|++....+.+ .++.+++.+
T Consensus 70 l~~~~~v~------~~Ptl~~~-~~g~~~~~~~~g---~~~~~~l~~ 106 (108)
T cd02996 70 IADRYRIN------KYPTLKLF-RNGMMMKREYRG---QRSVEALAE 106 (108)
T ss_pred HHHhCCCC------cCCEEEEE-eCCcCcceecCC---CCCHHHHHh
Confidence 89999999 89999999 789854332221 345666554
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-08 Score=71.94 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=64.1
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC-cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN-TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g-v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
+++ +++|.|| ++||+.|+...+.+.++.+.++..+ +.++.|..+ .+..+
T Consensus 12 ~~~-~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----------------------------~~~~~ 61 (102)
T TIGR01126 12 SNK-DVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----------------------------AEKDL 61 (102)
T ss_pred cCC-cEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----------------------------chHHH
Confidence 455 8999999 8999999999999999998887553 555544432 23578
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.+.|++. ..|+++++++++. +..+.+. ...+++...|++
T Consensus 62 ~~~~~i~------~~P~~~~~~~~~~-~~~~~g~----~~~~~l~~~i~~ 100 (102)
T TIGR01126 62 ASRFGVS------GFPTIKFFPKGKK-PVDYEGG----RDLEAIVEFVNE 100 (102)
T ss_pred HHhCCCC------cCCEEEEecCCCc-ceeecCC----CCHHHHHHHHHh
Confidence 8899998 8999999998876 4443332 345666655543
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=70.38 Aligned_cols=84 Identities=20% Similarity=0.377 Sum_probs=68.2
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| +.||+.|....|.|.++.+++.+ ++.++-|..+. +..+++.|
T Consensus 18 ~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~~~ 67 (103)
T PF00085_consen 18 KPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE----------------------------NKELCKKY 67 (103)
T ss_dssp SEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------SHHHHHHT
T ss_pred CCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc----------------------------cchhhhcc
Confidence 48999999 89999999999999999999987 78887776652 35789999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
++. ..|+++++ ++|+......+. .+.+++.+.|+
T Consensus 68 ~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~ 101 (103)
T PF00085_consen 68 GVK------SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIE 101 (103)
T ss_dssp TCS------SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHH
T ss_pred CCC------CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHH
Confidence 999 89999998 578888765443 45677777765
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-08 Score=71.28 Aligned_cols=71 Identities=14% Similarity=0.323 Sum_probs=57.4
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||+.|+...+.+.++++++. ++.++.|..+. ...+++.|
T Consensus 19 ~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~~~~~~ 67 (98)
T PTZ00051 19 ELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE----------------------------LSEVAEKE 67 (98)
T ss_pred CeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------hHHHHHHC
Confidence 48999999 9999999999999999988764 57777665432 24688999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. ..|+++++ ++|+++....+
T Consensus 68 ~v~------~~Pt~~~~-~~g~~~~~~~G 89 (98)
T PTZ00051 68 NIT------SMPTFKVF-KNGSVVDTLLG 89 (98)
T ss_pred CCc------eeeEEEEE-eCCeEEEEEeC
Confidence 998 89987666 79999988765
|
|
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=69.51 Aligned_cols=85 Identities=15% Similarity=0.300 Sum_probs=64.9
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++|+|| .+||+.|+...+.|.++.+++.+ ++.++.|..+. +.++.++|
T Consensus 15 ~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~ 64 (101)
T TIGR01068 15 KPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE----------------------------NPDIAAKY 64 (101)
T ss_pred CcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHHc
Confidence 37999999 89999999999999999988763 47777776542 24677889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++. ..|+.+++ ++|+++....+. .+.+++.+.|+.
T Consensus 65 ~v~------~~P~~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~ 99 (101)
T TIGR01068 65 GIR------SIPTLLLF-KNGKEVDRSVGA----LPKAALKQLINK 99 (101)
T ss_pred CCC------cCCEEEEE-eCCcEeeeecCC----CCHHHHHHHHHh
Confidence 998 89999999 689887765433 245566666553
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.7e-08 Score=74.53 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=57.4
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++.+||+|+ ++|||+|+...|.|.++.++ .++.+.-|.+|..... ...+. +.-.++.+.
T Consensus 23 ~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~-~~~~~----------------~~~~~~~~~ 81 (122)
T TIGR01295 23 KETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSF-EMSSL----------------NDLTAFRSR 81 (122)
T ss_pred CCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCc-CcccH----------------HHHHHHHHH
Confidence 336888999 89999999999999999887 3577888888742100 00000 000344555
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
|++...- ..+|+++++ ++|+++....+.
T Consensus 82 ~~i~~~i--~~~PT~v~~-k~Gk~v~~~~G~ 109 (122)
T TIGR01295 82 FGIPTSF--MGTPTFVHI-TDGKQVSVRCGS 109 (122)
T ss_pred cCCcccC--CCCCEEEEE-eCCeEEEEEeCC
Confidence 5443110 158999988 799999987654
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=72.92 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=65.4
Q ss_pred CCcEEEEEEecCCCCCC--hH--HHHHHHHHHHHHH-HhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 107 GKKYVILFFYPLDFTFV--CP--TEITAFSDRYTEF-EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~--C~--~~l~~L~~~~~~~-~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
.+.++|++|| +.||++ |+ ...|.|.++..++ ++.++.|+-|.+|. +
T Consensus 26 ~~~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~----------------------------~ 76 (120)
T cd03065 26 YDVLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK----------------------------D 76 (120)
T ss_pred CCceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC----------------------------C
Confidence 3447777888 899987 99 6677777777665 44567777776653 4
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.++++.|||. .+|+.+|+ +||+++. +.+. +..+++.+.|+.+
T Consensus 77 ~~La~~~~I~------~iPTl~lf-k~G~~v~-~~G~----~~~~~l~~~l~~~ 118 (120)
T cd03065 77 AKVAKKLGLD------EEDSIYVF-KDDEVIE-YDGE----FAADTLVEFLLDL 118 (120)
T ss_pred HHHHHHcCCc------cccEEEEE-ECCEEEE-eeCC----CCHHHHHHHHHHH
Confidence 6899999999 89999999 6999876 4332 4567777777755
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=71.91 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=61.1
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| +.||+.|+...|.|.++.+++. ++.++-|..+. ..++++.|
T Consensus 23 ~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~----------------------------~~~l~~~~ 71 (113)
T cd02989 23 ERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK----------------------------APFLVEKL 71 (113)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc----------------------------CHHHHHHC
Confidence 37999999 9999999999999999998875 57776665543 35688999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCC
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAI 221 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~ 221 (271)
++. .+|+.+++ ++|+++.+..+....
T Consensus 72 ~v~------~vPt~l~f-k~G~~v~~~~g~~~~ 97 (113)
T cd02989 72 NIK------VLPTVILF-KNGKTVDRIVGFEEL 97 (113)
T ss_pred CCc------cCCEEEEE-ECCEEEEEEECcccc
Confidence 999 89999888 699999887664443
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-07 Score=72.25 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=51.3
Q ss_pred ccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 105 YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 105 ~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
+..++.++++|| ++||++|+...+.|.++.+++ ..+.++-|..|. +.++
T Consensus 19 l~~~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~----------------------------~~~l 67 (113)
T cd02975 19 MKNPVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDE----------------------------DKEK 67 (113)
T ss_pred hCCCeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCc----------------------------CHHH
Confidence 334445777777 899999999999999998776 247777666553 2468
Q ss_pred HHHhCCccCCCCccceEEEEEcCC
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKE 208 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~ 208 (271)
++.|++. ..|+++|.+.+
T Consensus 68 ~~~~~v~------~vPt~~i~~~g 85 (113)
T cd02975 68 AEKYGVE------RVPTTIFLQDG 85 (113)
T ss_pred HHHcCCC------cCCEEEEEeCC
Confidence 8899999 89999999753
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=70.55 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=58.0
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
+++||.|| ++||+.|+...+.+.++.++++. .++.++.|..+.. ...+++.
T Consensus 19 ~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~~~ 70 (105)
T cd02998 19 KDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---------------------------NKDLAKK 70 (105)
T ss_pred CcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------chhhHHh
Confidence 37999999 99999999999999999999873 3566666665431 3578889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
|++. ..|++++++++|+....+
T Consensus 71 ~~i~------~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 71 YGVS------GFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred CCCC------CcCEEEEEeCCCCCcccc
Confidence 9998 899999998877665543
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=72.02 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=57.2
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| +.||++|+...|.|.++.+++. ++.++-|..+. . ++++.|
T Consensus 25 ~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~----------------------------~-~l~~~~ 72 (113)
T cd02957 25 TRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK----------------------------A-FLVNYL 72 (113)
T ss_pred CEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh----------------------------h-HHHHhc
Confidence 48999999 9999999999999999998875 56665554432 2 678889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
++. .+|+.+++ ++|+++....+.
T Consensus 73 ~i~------~~Pt~~~f-~~G~~v~~~~G~ 95 (113)
T cd02957 73 DIK------VLPTLLVY-KNGELIDNIVGF 95 (113)
T ss_pred CCC------cCCEEEEE-ECCEEEEEEecH
Confidence 998 89988777 799999987663
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-07 Score=70.65 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=58.8
Q ss_pred EEEEEEecCCC--CCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 110 YVILFFYPLDF--TFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 110 ~vvL~F~~~t~--Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++||.|| +.| ||.|....|.|.++.+++.++ +.++-|..|. +.+++..
T Consensus 29 ~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~----------------------------~~~la~~ 78 (111)
T cd02965 29 DLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD----------------------------EQALAAR 78 (111)
T ss_pred CEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC----------------------------CHHHHHH
Confidence 6889999 896 999999999999999998742 5555555543 4589999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
|+|. .+|+++++ +||+++....+
T Consensus 79 f~V~------sIPTli~f-kdGk~v~~~~G 101 (111)
T cd02965 79 FGVL------RTPALLFF-RDGRYVGVLAG 101 (111)
T ss_pred cCCC------cCCEEEEE-ECCEEEEEEeC
Confidence 9999 89999888 79999998755
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-07 Score=68.72 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=61.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~-~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++||+|| ..||+.|+...+.+.++.+.++ ..++.++.|..+. +..+.+.|
T Consensus 17 ~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------~~~~~~~~ 67 (101)
T cd02961 17 DVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----------------------------NNDLCSEY 67 (101)
T ss_pred cEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----------------------------hHHHHHhC
Confidence 8999999 8999999999999999998885 3456666665432 35788889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
++. ..|++++++++|+....+.+. .+.+++++
T Consensus 68 ~i~------~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~ 99 (101)
T cd02961 68 GVR------GYPTIKLFPNGSKEPVKYEGP----RTLESLVE 99 (101)
T ss_pred CCC------CCCEEEEEcCCCcccccCCCC----cCHHHHHh
Confidence 998 899999999887555554322 34555554
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-07 Score=70.49 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=52.3
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-C-cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-N-TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-g-v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+++||.|| ++||++|+...+.+.++.+++++. + +.+..|.++. +...++++
T Consensus 20 ~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--------------------------~~~~~~~~ 72 (114)
T cd02992 20 SAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--------------------------EENVALCR 72 (114)
T ss_pred CeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--------------------------hhhHHHHH
Confidence 48999999 999999999999999999988643 2 4554454432 12357888
Q ss_pred HhCCccCCCCccceEEEEEcCCCc
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
.|++. ..|+++++. +|.
T Consensus 73 ~~~i~------~~Pt~~lf~-~~~ 89 (114)
T cd02992 73 DFGVT------GYPTLRYFP-PFS 89 (114)
T ss_pred hCCCC------CCCEEEEEC-CCC
Confidence 99998 899999995 555
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-07 Score=78.36 Aligned_cols=85 Identities=12% Similarity=0.190 Sum_probs=63.5
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+++|.|| ++||++|+...|.+.++++++++ .+.+..|..+ .+.++++.|+
T Consensus 54 ~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~----------------------------~~~~l~~~~~ 103 (224)
T PTZ00443 54 PWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDAT----------------------------RALNLAKRFA 103 (224)
T ss_pred CEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCc----------------------------ccHHHHHHcC
Confidence 7999999 99999999999999999999874 3444444332 2357889999
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+. ..|++++++ +|+++....+ ....+++.+.+++.
T Consensus 104 I~------~~PTl~~f~-~G~~v~~~~G----~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 104 IK------GYPTLLLFD-KGKMYQYEGG----DRSTEKLAAFALGD 138 (224)
T ss_pred CC------cCCEEEEEE-CCEEEEeeCC----CCCHHHHHHHHHHH
Confidence 99 899999997 7887765322 24567776665543
|
|
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-06 Score=67.99 Aligned_cols=101 Identities=9% Similarity=-0.073 Sum_probs=61.0
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHH-HH--HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITA-FS--DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~-L~--~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.+| +++|+|+ ++||+.|+..-+. +. ++.+.+. +++.+|-|..+...+.. +.+ ..
T Consensus 14 ~~K-pVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~---~~~-----------------~~ 70 (124)
T cd02955 14 EDK-PIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVD---KIY-----------------MN 70 (124)
T ss_pred cCC-eEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHH---HHH-----------------HH
Confidence 455 8999988 9999999977552 22 3444443 35555555554321111 111 01
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC----CCCCCHHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL----AIGRSVDETLRTLQAL 235 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~----~~~~~~~e~l~~l~~l 235 (271)
.....||+. ..|+++++|++|++++...+-. ..+....++++.++.+
T Consensus 71 ~~~~~~~~~------G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 71 AAQAMTGQG------GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred HHHHhcCCC------CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 222356777 7899999999999999864321 2334566777766643
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-07 Score=72.31 Aligned_cols=80 Identities=9% Similarity=0.100 Sum_probs=61.0
Q ss_pred cCCcEEEEEEecC-------CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 106 IGKKYVILFFYPL-------DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 106 ~gkk~vvL~F~~~-------t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
+|+ ++||.|| + +||++|+...|.|.++.+++++ ++.++-|.+|... ...
T Consensus 20 ~~~-~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~---------------------~w~ 75 (119)
T cd02952 20 EGK-PIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP---------------------YWR 75 (119)
T ss_pred CCC-eEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc---------------------ccc
Confidence 456 8999999 8 9999999999999999999873 5888888887521 122
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
|.+.++.+.|++. . .+|++++++..++++.-
T Consensus 76 d~~~~~~~~~~I~-~----~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 76 DPNNPFRTDPKLT-T----GVPTLLRWKTPQRLVED 106 (119)
T ss_pred CcchhhHhccCcc-c----CCCEEEEEcCCceecch
Confidence 3456788888885 1 58999999655555443
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-07 Score=89.63 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=68.6
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEc
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (271)
+..+|| +++|+|| ++||+.|+...+.. .++.++++ ++.++-|.++... +
T Consensus 470 a~~~gK-~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~ 521 (571)
T PRK00293 470 AKGKGK-PVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------A 521 (571)
T ss_pred HHhcCC-cEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------h
Confidence 334566 8999999 99999999876653 45666664 5777777765411 1
Q ss_pred CChHHHHHhCCccCCCCccceEEEEEcCCCcEEE--EEeccCCCCCCHHHHHHHHHHHH
Q 024201 180 ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQH--STINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 180 ~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~--~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+.++.++|++. ..|+++++|+||+++. +..+. .+.+++++.|++++
T Consensus 522 ~~~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G~----~~~~~f~~~L~~~~ 570 (571)
T PRK00293 522 EDVALLKHYNVL------GLPTILFFDAQGQEIPDARVTGF----MDAAAFAAHLRQLQ 570 (571)
T ss_pred hhHHHHHHcCCC------CCCEEEEECCCCCCcccccccCC----CCHHHHHHHHHHhc
Confidence 235788899998 8999999999999853 33332 35677888777653
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.9e-07 Score=65.83 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=59.6
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++||+.|+...|.+.++.+++.. .+.++.|..+. +.++.+.
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~----------------------------~~~~~~~ 67 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV----------------------------HQSLAQQ 67 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc----------------------------hHHHHHH
Confidence 436999999 89999999999999999988864 46666665432 3568889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
|++. ..|++++++.+.+....+.+ +.+.+++.+.
T Consensus 68 ~~i~------~~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~ 101 (103)
T cd03001 68 YGVR------GFPTIKVFGAGKNSPQDYQG----GRTAKAIVSA 101 (103)
T ss_pred CCCC------ccCEEEEECCCCcceeecCC----CCCHHHHHHH
Confidence 9998 89999999644233322222 3455655543
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=62.83 Aligned_cols=71 Identities=15% Similarity=0.303 Sum_probs=56.5
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++|+|| +.||+.|....+.+.++.++ ..++.++.|..+. +.++.+.|
T Consensus 11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------~~~~~~~~ 59 (93)
T cd02947 11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------NPELAEEY 59 (93)
T ss_pred CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------ChhHHHhc
Confidence 47899999 89999999999999998877 4578888777653 34567788
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. ..|++++++ +|+++....+
T Consensus 60 ~v~------~~P~~~~~~-~g~~~~~~~g 81 (93)
T cd02947 60 GVR------SIPTFLFFK-NGKEVDRVVG 81 (93)
T ss_pred Ccc------cccEEEEEE-CCEEEEEEec
Confidence 888 889999884 7787777654
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=79.69 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=61.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++||+.|| +.||++|..-+|.|.++..+++. .+.+.-|++| ....++.+|
T Consensus 44 ~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D----------------------------~~p~vAaqf 93 (304)
T COG3118 44 VPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCD----------------------------AEPMVAAQF 93 (304)
T ss_pred CCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCC----------------------------cchhHHHHh
Confidence 49999999 99999999999999999999974 2555546555 346799999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
||. .+|++|++ +||+-+.-+.+.
T Consensus 94 giq------sIPtV~af-~dGqpVdgF~G~ 116 (304)
T COG3118 94 GVQ------SIPTVYAF-KDGQPVDGFQGA 116 (304)
T ss_pred CcC------cCCeEEEe-eCCcCccccCCC
Confidence 999 99999999 899999987554
|
|
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.2e-07 Score=83.84 Aligned_cols=93 Identities=8% Similarity=0.112 Sum_probs=68.9
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||.|| +.||++|+...|.|.++.++++++++.++.|.+|.. ......
T Consensus 370 ~~k-~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~--------------------------~~~~~~ 421 (463)
T TIGR00424 370 RKE-AWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD--------------------------QKEFAK 421 (463)
T ss_pred CCC-eEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC--------------------------ccHHHH
Confidence 444 8999999 999999999999999999999877788888887741 112334
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|+|. ..|+++++. +|....+.+. +..++++.++..+++|
T Consensus 422 ~~~~I~------~~PTii~Fk-~g~~~~~~Y~--~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 422 QELQLG------SFPTILFFP-KHSSRPIKYP--SEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHcCCC------ccceEEEEE-CCCCCceeCC--CCCCCHHHHHHHHHhh
Confidence 678998 899999995 4442222111 1247899998888766
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.2e-06 Score=69.36 Aligned_cols=157 Identities=17% Similarity=0.244 Sum_probs=108.6
Q ss_pred CCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEec-----CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYP-----LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~-----~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
+..-.+..+. +.+| +++|.|+ .|+.-.||+-|. ...||.|...+..+.....-+..+++.+++||..+.+
T Consensus 43 v~v~~~Y~F~---g~~G-~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~ 118 (211)
T PF05988_consen 43 VEVDKDYVFD---GPDG-PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLE 118 (211)
T ss_pred ccCCCCeEEe---CCCC-cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHH
Confidence 4444567775 6666 4999986 555444555443 4679999999999988888899999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC-ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG-IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g-~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.+.+|.+.+ +..||.++..+..+...|++...+.+ ...=..|+-|. |+|.+.+.. ..+..+.+.....
T Consensus 119 ~i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTyst---~~RG~e~l~~~~~ 187 (211)
T PF05988_consen 119 KIEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTYST---YGRGGERLMPTWN 187 (211)
T ss_pred HHHHHHHhc-------CCCceEEEcCCCcccccccceeccCCCceeEEEEEEcC-CEEEEEeec---CCCCchhhhhHHH
Confidence 999999998 88999999998999999998654322 11123455543 666666432 3455566655554
Q ss_pred HHHHhhhCCCcccCCCCCC
Q 024201 234 ALQYVQENPDEVCPAGWKP 252 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~ 252 (271)
-|-.......+.-|.+|-.
T Consensus 188 lLDlTP~GR~E~~~~~W~r 206 (211)
T PF05988_consen 188 LLDLTPLGRQEDPPMDWWR 206 (211)
T ss_pred HHhcCCCCCCCCCCCCccc
Confidence 3333333323446777743
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=74.72 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=67.3
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.-.+.++.++ +.|++|+. +.|++|..+.|.|..+.+++ |+.|+.||+|... ...|+-..
T Consensus 112 ~~~l~~la~~-~gL~~F~~-~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~----------------~~~fp~~~ 170 (215)
T PF13728_consen 112 DKALKQLAQK-YGLFFFYR-SDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP----------------IPSFPNPR 170 (215)
T ss_pred HHHHHHHhhC-eEEEEEEc-CCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC----------------CcCCCCCC
Confidence 3345666766 89999995 56999999999999999988 8999999999621 11222222
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.+..+++.+|+. .+|++|||++++.....
T Consensus 171 -~~~g~~~~l~v~------~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 171 -PDPGQAKRLGVK------VTPALFLVNPNTKKWYP 199 (215)
T ss_pred -CCHHHHHHcCCC------cCCEEEEEECCCCeEEE
Confidence 267789999998 89999999999844443
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.5e-07 Score=77.86 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=75.0
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.-.+.++.++ +.|++||. .-||+|....|.|+.+.+++ |+.+++||+|... ...||-..
T Consensus 142 ~~~i~~la~~-~gL~fFy~-~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~----------------~p~fp~~~ 200 (256)
T TIGR02739 142 EKAIQQLSQS-YGLFFFYR-GKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL----------------IPGLPNSR 200 (256)
T ss_pred HHHHHHHHhc-eeEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCcc
Confidence 3445666676 99999996 55999999999999999988 7999999999621 12233322
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCc-EEEEEeccCCCCCCHHHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGV-IQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~-V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.+...++.+|+. .+|++|||+++.+ +.-+..|. -..+++++.+..
T Consensus 201 -~d~gqa~~l~v~------~~Pal~Lv~~~t~~~~pv~~G~----iS~deL~~Ri~~ 246 (256)
T TIGR02739 201 -SDSGQAQHLGVK------YFPALYLVNPKSQKMSPLAYGF----ISQDELKERILN 246 (256)
T ss_pred -CChHHHHhcCCc------cCceEEEEECCCCcEEEEeecc----CCHHHHHHHHHH
Confidence 356678999998 8999999999944 44443332 245666665543
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-06 Score=59.90 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=55.8
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
.|..|| +.||++|+...+.|.++.++++. .+.++-|..+. +.+.++.||+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~~v 51 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME----------------------------NPQKAMEYGI 51 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc----------------------------CHHHHHHcCC
Confidence 466788 89999999999999999998863 36777665542 2346678999
Q ss_pred ccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 191 LIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 191 ~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
. .+|++++ +|+++.. + ....+++.+.|+.
T Consensus 52 ~------~vPt~~~---~g~~~~~--G----~~~~~~l~~~l~~ 80 (82)
T TIGR00411 52 M------AVPAIVI---NGDVEFI--G----APTKEELVEAIKK 80 (82)
T ss_pred c------cCCEEEE---CCEEEEe--c----CCCHHHHHHHHHh
Confidence 8 8899875 6764322 2 1245666666654
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=71.79 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=57.9
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+|||+|| +.||++|....|.|.++..++. ++.++-|..+. . .++..|+
T Consensus 85 ~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~----------------------------~-~l~~~f~ 132 (175)
T cd02987 85 TVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA----------------------------T-GASDEFD 132 (175)
T ss_pred EEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc----------------------------h-hhHHhCC
Confidence 8999999 9999999999999999999885 57777666542 1 4677788
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
+. .+|+++|+ ++|+++...++.
T Consensus 133 v~------~vPTllly-k~G~~v~~~vG~ 154 (175)
T cd02987 133 TD------ALPALLVY-KGGELIGNFVRV 154 (175)
T ss_pred CC------CCCEEEEE-ECCEEEEEEech
Confidence 88 89998888 799999987664
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=75.62 Aligned_cols=102 Identities=15% Similarity=0.252 Sum_probs=74.3
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
.+.++.++ +.|++||. +.||+|....|.|+.+.+++ |+.|++||+|... ...||... .
T Consensus 137 ~i~~la~~-~GL~fFy~-s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~----------------~p~fp~~~-~ 194 (248)
T PRK13703 137 AIAKLAEH-YGLMFFYR-GQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI----------------NPLLPDSR-T 194 (248)
T ss_pred HHHHHHhc-ceEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCCc-c
Confidence 45667666 89999996 55999999999999999988 7999999999621 12333322 3
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCC-cEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEG-VIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G-~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+...++.+|+. .+|++|||+++. ++.-+..|. -..+++.+.+..
T Consensus 195 d~gqa~~l~v~------~~PAl~Lv~~~t~~~~pv~~G~----iS~deL~~Ri~~ 239 (248)
T PRK13703 195 DQGQAQRLGVK------YFPALMLVDPKSGSVRPLSYGF----ITQDDLAKRFLN 239 (248)
T ss_pred ChhHHHhcCCc------ccceEEEEECCCCcEEEEeecc----CCHHHHHHHHHH
Confidence 45566899998 899999999996 555554332 245667666553
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=80.26 Aligned_cols=92 Identities=12% Similarity=0.198 Sum_probs=68.3
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| +.||++|+...|.+.++.++|...++.|+.|..|. .+.+++
T Consensus 364 ~~k-~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~---------------------------~~~~la 414 (457)
T PLN02309 364 RKE-PWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG---------------------------DQKEFA 414 (457)
T ss_pred CCC-eEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC---------------------------cchHHH
Confidence 344 8999999 99999999999999999999987788888887763 112445
Q ss_pred H-HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 K-SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~-~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+ .|+|. ..|+++++.++.+ ..+.+. +..++++.++..+++|
T Consensus 415 ~~~~~I~------~~PTil~f~~g~~-~~v~Y~--~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 415 KQELQLG------SFPTILLFPKNSS-RPIKYP--SEKRDVDSLLSFVNSL 456 (457)
T ss_pred HhhCCCc------eeeEEEEEeCCCC-CeeecC--CCCcCHHHHHHHHHHh
Confidence 4 58998 8999999954433 222211 1247889999888876
|
|
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=64.14 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=48.7
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
+.++|+|| ++||+.|+...+.+.++.+++++ ..+.+..|..+. .++...
T Consensus 19 ~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-----------------------------~~~~~~ 68 (104)
T cd02995 19 KDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA-----------------------------NDVPSE 68 (104)
T ss_pred CcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc-----------------------------hhhhhh
Confidence 48999999 99999999999999999999875 345555555542 134455
Q ss_pred hCCccCCCCccceEEEEEcCCC
Q 024201 188 YGVLIPDQGIALRGLFIIDKEG 209 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G 209 (271)
+++. ..|+++++.+++
T Consensus 69 ~~~~------~~Pt~~~~~~~~ 84 (104)
T cd02995 69 FVVD------GFPTILFFPAGD 84 (104)
T ss_pred ccCC------CCCEEEEEcCCC
Confidence 6665 789999996544
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.28 E-value=7e-06 Score=70.24 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=58.0
Q ss_pred cccCCcEEEEEEec--CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 104 DYIGKKYVILFFYP--LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 104 d~~gkk~vvL~F~~--~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
.+++. ..|+.|+. +.||++|+...|.+.++.+++. ++++..|.+|. |.+
T Consensus 16 ~~~~~-~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~--------------------------~~~ 66 (215)
T TIGR02187 16 ELKNP-VEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDT--------------------------PED 66 (215)
T ss_pred hcCCC-eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCC--------------------------ccc
Confidence 34444 56667773 3999999999999999998884 46666666663 134
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEE-EEec
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQH-STIN 217 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~-~~~~ 217 (271)
.++++.|++. .+|++++++ +|+.+. ++.+
T Consensus 67 ~~l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G 96 (215)
T TIGR02187 67 KEEAEKYGVE------RVPTTIILE-EGKDGGIRYTG 96 (215)
T ss_pred HHHHHHcCCC------ccCEEEEEe-CCeeeEEEEee
Confidence 6899999999 899998885 687764 5444
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.7e-06 Score=69.34 Aligned_cols=62 Identities=8% Similarity=-0.020 Sum_probs=51.9
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|++|| +.|||.|+...+.|.++.++|. ++.++-|..| |+
T Consensus 19 ~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d------------------------------------~~ 59 (204)
T PTZ00062 19 KLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA------------------------------------DA 59 (204)
T ss_pred cEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc------------------------------------cC
Confidence 5889999 9999999999999999999985 4666666422 88
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
|. .+|+++++ +||+++.+..+
T Consensus 60 V~------~vPtfv~~-~~g~~i~r~~G 80 (204)
T PTZ00062 60 NN------EYGVFEFY-QNSQLINSLEG 80 (204)
T ss_pred cc------cceEEEEE-ECCEEEeeeeC
Confidence 88 89999999 69999998654
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.6e-06 Score=80.07 Aligned_cols=89 Identities=9% Similarity=0.121 Sum_probs=64.7
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC-cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN-TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g-v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
|+ .+||+|| ++||+.|+...|.+.++.+++++.+ +.+.-|..+. +...+
T Consensus 375 ~k-~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~----------------------------~~~~~ 424 (477)
T PTZ00102 375 DK-DVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA----------------------------NETPL 424 (477)
T ss_pred CC-CEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC----------------------------Cccch
Confidence 45 8999999 9999999999999999998887643 4444454432 22346
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. ..|+.++++++|++...+.+ ....+++.+.|+..
T Consensus 425 ~~~~v~------~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 425 EEFSWS------AFPTILFVKAGERTPIPYEG----ERTVEGFKEFVNKH 464 (477)
T ss_pred hcCCCc------ccCeEEEEECCCcceeEecC----cCCHHHHHHHHHHc
Confidence 678887 88999999988876544333 24667777777643
|
|
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.23 E-value=7e-06 Score=69.07 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=58.5
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++|||+|| ++||+.|+...+.|.++..+|. .+.|+-|..+. ....|
T Consensus 103 ~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~-------------------------------~~~~~ 148 (192)
T cd02988 103 TWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ-------------------------------CIPNY 148 (192)
T ss_pred CEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH-------------------------------hHhhC
Confidence 38999999 9999999999999999999985 57777776542 12457
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCC
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG 222 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~ 222 (271)
++. .+|+++|+ ++|+++...++....+
T Consensus 149 ~i~------~lPTlliy-k~G~~v~~ivG~~~~g 175 (192)
T cd02988 149 PDK------NLPTILVY-RNGDIVKQFIGLLEFG 175 (192)
T ss_pred CCC------CCCEEEEE-ECCEEEEEEeCchhhC
Confidence 777 78988888 8999999988754443
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=75.95 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=63.2
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++++|.|| ++||+.|+...|.+.++++++++.+ +.++.|.++. +.++++
T Consensus 19 ~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 69 (462)
T TIGR01130 19 EFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE----------------------------EKDLAQ 69 (462)
T ss_pred CCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC----------------------------cHHHHH
Confidence 37899999 9999999999999999999988766 6666565432 357889
Q ss_pred HhCCccCCCCccceEEEEEcCCCcE-EEEEeccCCCCCCHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVI-QHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V-~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.|++. ..|+++++ ++|+. +..+.+. .+.+++.+.++.
T Consensus 70 ~~~i~------~~Pt~~~~-~~g~~~~~~~~g~----~~~~~l~~~i~~ 107 (462)
T TIGR01130 70 KYGVS------GYPTLKIF-RNGEDSVSDYNGP----RDADGIVKYMKK 107 (462)
T ss_pred hCCCc------cccEEEEE-eCCccceeEecCC----CCHHHHHHHHHH
Confidence 99998 89988888 57776 4444332 345555555543
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-05 Score=60.86 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC----------------
Q 024201 131 FSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD---------------- 194 (271)
Q Consensus 131 L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~---------------- 194 (271)
|.+.++++++.||.+|+|+..+.+..++|.+.. .++++++.|++.++.+++|+....
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~ 74 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNI 74 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHH
Confidence 667788999999999999999987799999775 789999999999999999987421
Q ss_pred --------------CC--ccceEEEEEcCCCcEEEEEe
Q 024201 195 --------------QG--IALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 195 --------------~g--~~~P~~~lID~~G~V~~~~~ 216 (271)
.| ......||+|++|+|++.+.
T Consensus 75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 01 13467899999999999874
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=75.05 Aligned_cols=87 Identities=15% Similarity=0.269 Sum_probs=63.5
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
++ .++|.|| +.||++|+...|.+.++.+++++.+ +.+.-|.++ .+.++
T Consensus 49 ~~-~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~----------------------------~~~~l 98 (477)
T PTZ00102 49 NE-IVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT----------------------------EEMEL 98 (477)
T ss_pred CC-cEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC----------------------------CCHHH
Confidence 44 7999999 9999999999999999998887554 444444332 24678
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++.|++. ..|+.++++. |+.+ .+.+ .++.+++.+.++.+
T Consensus 99 ~~~~~i~------~~Pt~~~~~~-g~~~-~y~g----~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 99 AQEFGVR------GYPTIKFFNK-GNPV-NYSG----GRTADGIVSWIKKL 137 (477)
T ss_pred HHhcCCC------cccEEEEEEC-CceE-EecC----CCCHHHHHHHHHHh
Confidence 9999998 8999999975 4443 3222 35677777777654
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=56.51 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=60.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHH-HH--HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITA-FS--DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~-L~--~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
++| +++|+|+ +.||+.|...... |. ++.+.+.+ ++.++.+..++++ ..
T Consensus 16 ~~K-~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e--------------------------~~ 66 (114)
T cd02958 16 EKK-WLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSE--------------------------GQ 66 (114)
T ss_pred hCc-eEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCcc--------------------------HH
Confidence 455 8999999 8999999876543 21 22333332 4444444443211 23
Q ss_pred HHHHHhCCccCCCCccceEEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDK-EGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~-~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++++.|++. ..|+.++||+ +|+++....+. ...++++..|+..
T Consensus 67 ~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~----~~~~~f~~~L~~~ 110 (114)
T cd02958 67 RFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGN----ITPEDLLSQLIEF 110 (114)
T ss_pred HHHHHhCcc------CCCeEEEEeCccCcEeEEEcCC----CCHHHHHHHHHHH
Confidence 567778887 8999999999 89999986554 3567888777754
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-05 Score=55.48 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=44.3
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
.|.|| ++|||.|....+.+.++.+++. +.+-.+.+|+ .+.+..||+.
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~---~~~~~~~v~~-----------------------------~~~a~~~~v~ 48 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELG---IDAEFEKVTD-----------------------------MNEILEAGVT 48 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcC---CCeEEEEeCC-----------------------------HHHHHHcCCC
Confidence 37788 7999999999999999999874 3333344442 1124568888
Q ss_pred cCCCCccceEEEEEcCCCcEEEE
Q 024201 192 IPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.+|+++| ||+++..
T Consensus 49 ------~vPti~i---~G~~~~~ 62 (76)
T TIGR00412 49 ------ATPGVAV---DGELVIM 62 (76)
T ss_pred ------cCCEEEE---CCEEEEE
Confidence 8998877 8988843
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.2e-05 Score=59.18 Aligned_cols=94 Identities=7% Similarity=0.089 Sum_probs=54.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHH--HHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSD--RYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~--~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
.+| +++|+|+ +.||++|+..-..+-+ -..++-+++ +|.|.++.... +. +.. .
T Consensus 22 ~~K-pvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~--Fv~V~l~~d~t-----d~--------~~~------~--- 75 (130)
T cd02960 22 SNK-PLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQED--FIMLNLVHETT-----DK--------NLS------P--- 75 (130)
T ss_pred CCC-eEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhC--eEEEEEEeccC-----CC--------CcC------c---
Confidence 455 8999988 8999999977665422 122222234 45444442100 00 111 0
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCC------CCCCHHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA------IGRSVDETLRTLQALQ 236 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~------~~~~~~e~l~~l~~l~ 236 (271)
.| ..+|+++++|++|+++....+... ...+++++++-++..+
T Consensus 76 ----~g-------~~vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 76 ----DG-------QYVPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred ----cC-------cccCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHHHH
Confidence 12 158999999999999988654332 2245667776665443
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.9e-05 Score=50.96 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=47.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
|+.|| ..||+.|....+.+.++ +....++.++.++.+.......+ ...+++.
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~ 52 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE-------------------------LKRYGVG 52 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH-------------------------HHhCCCc
Confidence 46788 89999999999999998 55566899999999874433322 3445555
Q ss_pred cCCCCccceEEEEEcCC
Q 024201 192 IPDQGIALRGLFIIDKE 208 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~ 208 (271)
..|++++++.+
T Consensus 53 ------~~P~~~~~~~~ 63 (69)
T cd01659 53 ------GVPTLVVFGPG 63 (69)
T ss_pred ------cccEEEEEeCC
Confidence 68888888765
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.5e-05 Score=52.02 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=44.8
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
-|..|+ ++|||+|....+.|.++.++. .++++.-|..+. +.++++.||+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~----------------------------~~~l~~~~~i 50 (67)
T cd02973 2 NIEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAAE----------------------------FPDLADEYGV 50 (67)
T ss_pred EEEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEccc----------------------------CHhHHHHcCC
Confidence 366777 899999999988888886543 256666665432 2456778888
Q ss_pred ccCCCCccceEEEEEcCCCcEEEE
Q 024201 191 LIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 191 ~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
. .+|+++| +|++++.
T Consensus 51 ~------~vPti~i---~~~~~~~ 65 (67)
T cd02973 51 M------SVPAIVI---NGKVEFV 65 (67)
T ss_pred c------ccCEEEE---CCEEEEe
Confidence 7 7888654 4666654
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0002 Score=57.61 Aligned_cols=144 Identities=12% Similarity=0.191 Sum_probs=84.5
Q ss_pred CCCCCCCCeEEeeec-------CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHH--HHhcCcEEEE-E
Q 024201 79 LVGNTAPDFAAEAVF-------DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE--FEKLNTEILG-V 148 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~-------~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~--~~~~gv~vv~-V 148 (271)
.+|+++|..++.+-. +-..+.++...+.|| |.|+++.+- -+--..+...|.+..++ |.....+..+ |
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GK--Vrviq~iAG-r~sake~N~~l~~aik~a~f~~d~yqtttIi 78 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGK--VRVIQHIAG-RSSAKEMNAPLIEAIKAAKFPHDKYQTTTII 78 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCC--EEEEEEecc-CCchhHhhHHHHHHHHHcCCCccceeEEEEE
Confidence 467778877765211 123457888899999 444444222 35555555555444332 5555677777 4
Q ss_pred eCCCH-HHHHHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHH
Q 024201 149 STDSV-FSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVD 226 (271)
Q Consensus 149 S~d~~-~~~~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~ 226 (271)
+.|+. .-...|.+...+... ..++|. ++.|.++.+.++|++... .-..+|+|++|+|++..-+.+. ...++
T Consensus 79 N~dDAi~gt~~fVrss~e~~k-k~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~Ls-~~Ev~ 151 (160)
T PF09695_consen 79 NLDDAIWGTGGFVRSSAEDSK-KEFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGALS-PAEVQ 151 (160)
T ss_pred ecccccccchHHHHHHHHHhh-hhCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCCCC-HHHHH
Confidence 66532 111223333322221 135666 679999999999999842 3457899999999999755433 22345
Q ss_pred HHHHHH
Q 024201 227 ETLRTL 232 (271)
Q Consensus 227 e~l~~l 232 (271)
++++.|
T Consensus 152 qVi~Ll 157 (160)
T PF09695_consen 152 QVIALL 157 (160)
T ss_pred HHHHHH
Confidence 555544
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.9e-05 Score=55.43 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=51.7
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.++++. .-|..|+ +.||++|+...+.+.++.+++. ++.+.-|..+. ..
T Consensus 8 ~~l~~p-v~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~----------------------------~~ 55 (89)
T cd03026 8 RRLNGP-INFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL----------------------------FQ 55 (89)
T ss_pred HhcCCC-EEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh----------------------------CH
Confidence 456655 5566666 8999999998888888887654 46665554432 25
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
++++.||+. .+|++++ ||++++.
T Consensus 56 e~a~~~~V~------~vPt~vi---dG~~~~~ 78 (89)
T cd03026 56 DEVEERGIM------SVPAIFL---NGELFGF 78 (89)
T ss_pred HHHHHcCCc------cCCEEEE---CCEEEEe
Confidence 788899999 8999864 6888775
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.4e-06 Score=50.62 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=27.7
Q ss_pred HHHHhhhCCCcccCCCCCCCCCCC---CCCch-hhHHHhh
Q 024201 234 ALQYVQENPDEVCPAGWKPGDKSM---KPDPK-LSKEYFA 269 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~~~~~~---~~~~~-~~~~~~~ 269 (271)
+||+..++ ++.||++|+||++.| +.+.. ..|.|+.
T Consensus 1 ALQ~~d~~-~v~tPanW~pGd~~ivpp~~s~~~a~k~~~~ 39 (40)
T PF10417_consen 1 ALQFTDKH-GVATPANWKPGDDVIVPPPVSQEEAKKRFPE 39 (40)
T ss_dssp HHHHHHHH-SSBBCTTTCTTSGEBE-TTSSTTHHHHHHHC
T ss_pred Cceehhhh-CcccCcCCCCCCCeEcCCCCCHHHHHHHccC
Confidence 57888888 899999999999999 55533 6666653
|
The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C .... |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=62.17 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC---cEEEEEeCCCHHHHH
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN---TEILGVSTDSVFSHL 157 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g---v~vv~VS~d~~~~~~ 157 (271)
=...|.+++. + ...+.+.+|+ ++||-+. -.+|..|..++..|..+..+|...| |.++.|+........
T Consensus 7 C~~~p~W~i~---~----~~pm~~~~G~-VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~ 77 (238)
T PF04592_consen 7 CKPPPPWKIG---G----QDPMLNSLGH-VTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRL 77 (238)
T ss_pred CCCCCCceEC---C----chHhhhcCCc-EEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhH
Confidence 3467888774 3 4577888998 7888888 4569999999999999999998876 556666654432222
Q ss_pred H--HHHHhhhcCCCCCcccceEE--cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 158 A--WVQTDRKSGGLGDLKYPLIA--DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 158 ~--~~~~~~~~~~~~~~~f~~l~--D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
. .++.. -...|++.- +.+..++..++-..++ +||+|+-|++.+...
T Consensus 78 ~~~~l~~r------~~~~ipVyqq~~~q~dvW~~L~G~kdD-------~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 78 KYWELKRR------VSEHIPVYQQDENQPDVWELLNGSKDD-------FLIYDRCGRLTYHIP 127 (238)
T ss_pred HHHHHHHh------CCCCCceecCCccccCHHHHhCCCcCc-------EEEEeccCcEEEEec
Confidence 1 11111 133477775 3458899999887554 799999999999853
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.1e-05 Score=59.76 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=46.0
Q ss_pred cccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 102 LSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+..+..+ ..+|+|. .+|||.|...+|.|.++.+... ++++=-|..|. ..+..+.+
T Consensus 36 l~~~~~~-~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~---~~el~~~~------------------ 90 (129)
T PF14595_consen 36 LKSIQKP-YNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDE---NKELMDQY------------------ 90 (129)
T ss_dssp HHT--S--EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHH---HHHHTTTT------------------
T ss_pred HHhcCCC-cEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecC---ChhHHHHH------------------
Confidence 3344444 7788888 9999999999999999999864 55555555543 11111111
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
+. .|.. .+|.++++|++|+++.++.
T Consensus 91 --lt--~g~~------~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 91 --LT--NGGR------SIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp --TT---SS--------SSEEEEE-TT--EEEEEE
T ss_pred --Hh--CCCe------ecCEEEEEcCCCCEeEEEc
Confidence 11 3444 7999999999999999974
|
|
| >KOG4498 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=59.84 Aligned_cols=133 Identities=11% Similarity=0.169 Sum_probs=90.8
Q ss_pred CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcc
Q 024201 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLK 173 (271)
Q Consensus 94 ~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~ 173 (271)
+..|+.|.+.++..+...+|.|.+--.|-.|+.+...|.++.+-++..|+.+|+|-..+......+.++- .+.
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f~ 108 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YFS 108 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Ccc
Confidence 5667799999997776788999988999999999999999988888899999998764333333333322 233
Q ss_pred cceEEcCChHHHHHhCCccC----------------------C----CCccceEEEEEcCCCcEEEEEeccCC-CCCCHH
Q 024201 174 YPLIADITKSISKSYGVLIP----------------------D----QGIALRGLFIIDKEGVIQHSTINNLA-IGRSVD 226 (271)
Q Consensus 174 f~~l~D~~~~~~~~ygv~~~----------------------~----~g~~~P~~~lID~~G~V~~~~~~~~~-~~~~~~ 226 (271)
-.++.|++..+.+.++.... . .+......++|.+.|+|.+.+..... ...+++
T Consensus 109 gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~ 188 (197)
T KOG4498|consen 109 GEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPID 188 (197)
T ss_pred eeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCHH
Confidence 35666776555544443321 0 12235678999888899998765322 223677
Q ss_pred HHHHHHH
Q 024201 227 ETLRTLQ 233 (271)
Q Consensus 227 e~l~~l~ 233 (271)
++++.+.
T Consensus 189 ~Vl~v~~ 195 (197)
T KOG4498|consen 189 SVLQVVG 195 (197)
T ss_pred HHHHHhh
Confidence 7777653
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00041 Score=49.08 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=46.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
|+.|+ ++||++|+...|.|.++. +.++ .+| .|...++++.|++.
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~--~vd--------------------------~~~~~~l~~~~~v~ 45 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVE-------YTYV--DVD--------------------------TDEGVELTAKHHIR 45 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHHh-------heEE--eee--------------------------CCCCHHHHHHcCCc
Confidence 67888 999999998888775331 1111 111 23457899999999
Q ss_pred cCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 192 IPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.+|+++ +|+.+....+ ..++..++.+.|
T Consensus 46 ------~~PT~~----~g~~~~~~~G---~~~~~~~l~~~~ 73 (75)
T PHA02125 46 ------SLPTLV----NTSTLDRFTG---VPRNVAELKEKL 73 (75)
T ss_pred ------eeCeEE----CCEEEEEEeC---CCCcHHHHHHHh
Confidence 889865 5777665443 234455555544
|
|
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00015 Score=62.41 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=58.6
Q ss_pred cccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 102 LSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
|+.--+| .+++.|. ++||.+|....|.++++..+|. |..++=|.+|. -
T Consensus 16 ls~ag~k-~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~----------------------------c 63 (288)
T KOG0908|consen 16 LSAAGGK-LVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE----------------------------C 63 (288)
T ss_pred hhccCce-EEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH----------------------------h
Confidence 3333344 9999999 9999999999999999999995 66777676653 2
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
...+..+||. .+|++++. .||+-+...
T Consensus 64 ~~taa~~gV~------amPTFiff-~ng~kid~~ 90 (288)
T KOG0908|consen 64 RGTAATNGVN------AMPTFIFF-RNGVKIDQI 90 (288)
T ss_pred hchhhhcCcc------cCceEEEE-ecCeEeeee
Confidence 3466778998 89998888 788877764
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00015 Score=53.96 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=49.3
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|+ ++++.|+ ..||+.|....+.|.++.++++++ +.++-|..|. ...+++
T Consensus 12 ~~-~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~----------------------------~~~~~~ 60 (103)
T cd02982 12 GK-PLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD----------------------------FGRHLE 60 (103)
T ss_pred CC-CEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh----------------------------hHHHHH
Confidence 55 7889998 899999999999999999999843 6666665543 134566
Q ss_pred HhCCccCCCCccceEEEEEcC
Q 024201 187 SYGVLIPDQGIALRGLFIIDK 207 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~ 207 (271)
.||+... ..|+.++++.
T Consensus 61 ~~~i~~~----~~P~~~~~~~ 77 (103)
T cd02982 61 YFGLKEE----DLPVIAIINL 77 (103)
T ss_pred HcCCChh----hCCEEEEEec
Confidence 6776521 4788888876
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.5e-05 Score=55.58 Aligned_cols=48 Identities=25% Similarity=0.446 Sum_probs=39.5
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
....+.++ ++++.|| +.||+.|....|.+.++.+++.. .+.++.|...
T Consensus 26 ~~~~~~~~-~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGK-PVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCc-eEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 33344466 8899999 99999999999999999999875 6788888775
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00026 Score=66.80 Aligned_cols=85 Identities=9% Similarity=0.180 Sum_probs=60.2
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-c-CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-L-NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~-gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+.+||+|| ++||++|....|.+.++.++++. . ++.++.|..+.. ++..
T Consensus 365 ~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-----------------------------~~~~ 414 (462)
T TIGR01130 365 KDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-----------------------------DVPP 414 (462)
T ss_pred CeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-----------------------------ccCC
Confidence 38999999 99999999999999999999986 2 577777766431 0112
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEE-EEEeccCCCCCCHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQ-HSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~-~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
|++. ..|+.+++++++++. ....+ ....+++++.|+.
T Consensus 415 -~~i~------~~Pt~~~~~~~~~~~~~~~~g----~~~~~~l~~~l~~ 452 (462)
T TIGR01130 415 -FEVE------GFPTIKFVPAGKKSEPVPYDG----DRTLEDFSKFIAK 452 (462)
T ss_pred -CCcc------ccCEEEEEeCCCCcCceEecC----cCCHHHHHHHHHh
Confidence 6777 789999997666531 22212 3557777777653
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00028 Score=66.85 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=66.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.+..++++-|| +.||.+|....|++.+...++++.|=.+.-.-+|- ..+.+++
T Consensus 40 ~~~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDa--------------------------t~~~~~~ 92 (493)
T KOG0190|consen 40 NGHEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA--------------------------TEESDLA 92 (493)
T ss_pred ccCceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec--------------------------chhhhhH
Confidence 34457889999 99999999999999999999987642222222221 1236889
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.+|++. ..|+.-|. +||+....+. -.+..+.++..|+.
T Consensus 93 ~~y~v~------gyPTlkiF-rnG~~~~~Y~----G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 93 SKYEVR------GYPTLKIF-RNGRSAQDYN----GPREADGIVKWLKK 130 (493)
T ss_pred hhhcCC------CCCeEEEE-ecCCcceecc----CcccHHHHHHHHHh
Confidence 999999 78888777 8999844332 24678888888764
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0013 Score=56.23 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=49.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|+.|| ++||++|+...+.+.++..+.. .+.+.-|..+ ...++++.||
T Consensus 135 v~I~~F~-a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~----------------------------~~~~~~~~~~ 183 (215)
T TIGR02187 135 VRIEVFV-TPTCPYCPYAVLMAHKFALAND--KILGEMIEAN----------------------------ENPDLAEKYG 183 (215)
T ss_pred cEEEEEE-CCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC----------------------------CCHHHHHHhC
Confidence 4555578 9999999987777766665531 3444333222 3467888999
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+. .+|+++|. ++|+. +.+ ....+++.+.|+
T Consensus 184 V~------~vPtl~i~-~~~~~---~~G----~~~~~~l~~~l~ 213 (215)
T TIGR02187 184 VM------SVPKIVIN-KGVEE---FVG----AYPEEQFLEYIL 213 (215)
T ss_pred Cc------cCCEEEEe-cCCEE---EEC----CCCHHHHHHHHH
Confidence 99 88998765 56763 222 123456666554
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0016 Score=50.62 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=56.3
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHH-H--HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAF-S--DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L-~--~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.+| .++|+|+ +.||+.|....... . ++.+.+ ++++.++.+.+++.+ ..
T Consensus 26 ~~K-~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~e--------------------------g~ 76 (122)
T smart00594 26 QRR-LLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSE--------------------------GQ 76 (122)
T ss_pred hcC-CEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChh--------------------------HH
Confidence 455 8999999 89999998765542 1 122333 335555555544322 14
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCC-cEEEEEeccCCCCCCHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEG-VIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G-~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
+++..|++. ..|+.+|||++| ......+....-....++++..|
T Consensus 77 ~l~~~~~~~------~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 77 RVSQFYKLD------SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHhcCcC------CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 678888888 899999999997 21112222222234577777665
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0025 Score=53.87 Aligned_cols=127 Identities=15% Similarity=0.297 Sum_probs=90.0
Q ss_pred eEecccccCCcEEEEE--Eec----CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCc
Q 024201 99 NVKLSDYIGKKYVILF--FYP----LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDL 172 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~--F~~----~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~ 172 (271)
+.+|.|+-+.+-.||+ |.. ...||.|......+.-...-+...+|.+++||--+.+++.++.+.+ +.
T Consensus 63 ~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm-------GW 135 (247)
T COG4312 63 KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM-------GW 135 (247)
T ss_pred chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc-------CC
Confidence 7899997554333333 221 3469999999999988888888889999999999999999999998 88
Q ss_pred ccceEEcCChHHHHHhCCccCCC----C---------------ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 173 KYPLIADITKSISKSYGVLIPDQ----G---------------IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 173 ~f~~l~D~~~~~~~~ygv~~~~~----g---------------~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.|+.++..+..+.+.|++.+.+. | .+.-..|.-+.+|+|-..+.. ..+..++++-...
T Consensus 136 ~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty~~---~~RG~e~~~~~~~ 212 (247)
T COG4312 136 QFPWVSSTDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTYSQ---YARGLEQLIGTWN 212 (247)
T ss_pred cceeEeccCcccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCcccccccc---CCccccchhhHHH
Confidence 99999999999999998764431 1 011234555777777665422 2344555555544
Q ss_pred HH
Q 024201 234 AL 235 (271)
Q Consensus 234 ~l 235 (271)
-|
T Consensus 213 ~L 214 (247)
T COG4312 213 LL 214 (247)
T ss_pred Hh
Confidence 33
|
|
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0047 Score=54.15 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=71.6
Q ss_pred CCCCCeEEeeecCCCceeEeccc-ccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHH-hc--CcEEEEEeCCCHHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSD-YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE-KL--NTEILGVSTDSVFSHL 157 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~-~~--gv~vv~VS~d~~~~~~ 157 (271)
-.+|+|...++.+ +.+++.+ ++|| +.||..+...|--.|....-. ...++|. .. .+++|-|++.+.-- +
T Consensus 99 lyFP~l~g~tL~g---~~~~~~~~l~gk-vSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~~-k 171 (252)
T PF05176_consen 99 LYFPNLQGKTLAG---NKVDTTDLLRGK-VSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENWL-K 171 (252)
T ss_pred CcCCCCccccCCC---CCcccccccCCc-eEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHHH-H
Confidence 3679999886644 4666654 5777 666555534444444332111 2233332 23 68999998875322 2
Q ss_pred HHHHH-----hhhcCCCC-CcccceEEcC--ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 158 AWVQT-----DRKSGGLG-DLKYPLIADI--TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 158 ~~~~~-----~~~~~~~~-~~~f~~l~D~--~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
.|+-. +++..... ...|-++.+. ..++-+.+|+... .+-++||||.+|+|++..-
T Consensus 172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~----~~GYvyLVD~~grIRWags 234 (252)
T PF05176_consen 172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNS----YVGYVYLVDPNGRIRWAGS 234 (252)
T ss_pred HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCC----CcCeEEEECCCCeEEeCcc
Confidence 33322 22222111 2233333333 4688899999865 4566999999999999953
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0032 Score=45.14 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=32.3
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
.|| +++|+|+ +.||+.|+..-..+ .++.+.+. +++..+-|..+...
T Consensus 16 ~~k-pvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 16 EGK-PVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDED 64 (82)
T ss_dssp HTS-EEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHH
T ss_pred cCC-CEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCC
Confidence 455 8999998 99999999876665 22333233 57888888776544
|
... |
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0029 Score=48.96 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=76.1
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
.|+++++++-+||+|-+..--+.-..++..|.+....+.++.+.++.|.-+...... ..+-...
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~----------------~~~~~~~ 65 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG----------------KPLSPED 65 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc----------------CcCCHHH
Confidence 467888886677777754444556677888888788899999988888554321110 1111122
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
...+.+.|++.. ...+.+||++||.+..++-.+ -+.+++.+.|++++
T Consensus 66 ~~~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~p----~~~~~lf~~ID~MP 112 (118)
T PF13778_consen 66 IQALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPEP----IDPEELFDTIDAMP 112 (118)
T ss_pred HHHHHHHhCCCC-----CceEEEEEeCCCcEEEecCCC----CCHHHHHHHHhCCc
Confidence 367888888772 346799999999999995332 36889999998775
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.035 Score=43.78 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=59.9
Q ss_pred ecccccCCcEEEEEEecCC--CCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 101 KLSDYIGKKYVILFFYPLD--FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t--~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
+++++.+.....+.|+++. .+|-+....--|.++.++|.+..+.+.-|..|
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD--------------------------- 78 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE--------------------------- 78 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC---------------------------
Confidence 4555443323344454333 22333344445555666664323555555554
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+.+++..|||. .+|+.+++ +||+++....+. .+.+++++.|+.+.
T Consensus 79 -~~~~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~----~~k~~l~~~I~~~L 124 (132)
T PRK11509 79 -QSEAIGDRFGVF------RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLV 124 (132)
T ss_pred -CCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCc----CCHHHHHHHHHHHh
Confidence 357899999999 89999888 899999987653 34577888877653
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.023 Score=43.83 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=56.6
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
+.+.+||.|+ ++| |.|.. .|...++.+++.... |.|--|..++.. + ..+.++
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~------~-----------------~~~~~L 70 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYG------E-----------------KLNMEL 70 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccccc------c-----------------hhhHHH
Confidence 3457899999 966 56654 488888888885432 332235554310 0 023679
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEE-EEEeccCCCCCCHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQ-HSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~-~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++.|||... ..|+..|+. +|... ...+ . +.++..+.|++.+..
T Consensus 71 ~~~y~I~~~----gyPTl~lF~-~g~~~~~~~Y-~-G~~r~~~~lv~~v~~ 114 (116)
T cd03007 71 GERYKLDKE----SYPVIYLFH-GGDFENPVPY-S-GADVTVDALQRFLKG 114 (116)
T ss_pred HHHhCCCcC----CCCEEEEEe-CCCcCCCccC-C-CCcccHHHHHHHHHh
Confidence 999999632 478888884 56411 1111 1 112788888887653
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.041 Score=37.52 Aligned_cols=33 Identities=3% Similarity=0.122 Sum_probs=23.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|..|+ ..|||.|....+.|.+ .|+.+.-+.++.
T Consensus 2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 44566 8999999987665543 478877777664
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.034 Score=48.19 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=59.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE--eC---CC--HHH----------HHHHHHHhhhcCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV--ST---DS--VFS----------HLAWVQTDRKSGG 168 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V--S~---d~--~~~----------~~~~~~~~~~~~~ 168 (271)
.|+ .+|+.|. -..||+|+...+.+.++.+ .|+.|..+ .. .+ ... .++|.+.+.. ..
T Consensus 106 ~~k-~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~-~~ 178 (232)
T PRK10877 106 QEK-HVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKG-KD 178 (232)
T ss_pred CCC-EEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcC-CC
Confidence 456 6777777 6779999998888766533 46666543 22 11 111 1223222211 11
Q ss_pred CCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 169 LGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 169 ~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
..........+.+.++++.+|+. .+|++++ +||+++.- ....+++.+.|++.|
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~------gTPtiv~--~~G~~~~G-------~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQ------GTPAIVL--SNGTLVPG-------YQGPKEMKAFLDEHQ 231 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCc------cccEEEE--cCCeEeeC-------CCCHHHHHHHHHHcc
Confidence 10101111113347888999999 8998874 47887622 135677777766543
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.033 Score=39.32 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=37.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCc
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~ 197 (271)
+.+||.|......+.++..++ |+++-.+... ...++ ..||+.
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~----------------------------~~~~~-~~ygv~------ 48 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIE----------------------------DFEEI-EKYGVM------ 48 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETT----------------------------THHHH-HHTT-S------
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEcc----------------------------CHHHH-HHcCCC------
Confidence 566999998888888777776 3444222111 11344 889999
Q ss_pred cceEEEEEcCCCcEEEE
Q 024201 198 ALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 198 ~~P~~~lID~~G~V~~~ 214 (271)
..|+. +| ||++++.
T Consensus 49 ~vPal-vI--ng~~~~~ 62 (76)
T PF13192_consen 49 SVPAL-VI--NGKVVFV 62 (76)
T ss_dssp SSSEE-EE--TTEEEEE
T ss_pred CCCEE-EE--CCEEEEE
Confidence 88988 66 5888876
|
... |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.019 Score=44.43 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=47.2
Q ss_pred cCCcEEEEEEecC------CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEc
Q 024201 106 IGKKYVILFFYPL------DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (271)
Q Consensus 106 ~gkk~vvL~F~~~------t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (271)
.|+ ++.|+|... +|||.|....|.+.+...... .+..+|-|.+.+. ..|.+
T Consensus 18 ~~~-~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r---~~Wkd------------------ 74 (119)
T PF06110_consen 18 SGK-PLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR---PEWKD------------------ 74 (119)
T ss_dssp TTS-EEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H---HHHC-------------------
T ss_pred CCC-eEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH---HHhCC------------------
Confidence 344 677777732 699999999999999888743 3788888877652 34533
Q ss_pred CChHHHH--HhCCccCCCCccceEEEEEcCCCc
Q 024201 180 ITKSISK--SYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 180 ~~~~~~~--~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
++..+-+ .+++. .+|+.+-.+..++
T Consensus 75 p~n~fR~~p~~~l~------~IPTLi~~~~~~r 101 (119)
T PF06110_consen 75 PNNPFRTDPDLKLK------GIPTLIRWETGER 101 (119)
T ss_dssp TTSHHHH--CC---------SSSEEEECTSS-E
T ss_pred CCCCceEcceeeee------ecceEEEECCCCc
Confidence 2333333 58888 8999999976655
|
; PDB: 1V9W_A 1WOU_A. |
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.066 Score=41.25 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=59.9
Q ss_pred cCCcEEEEEEecCC----CCCChHHHH--HHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEc
Q 024201 106 IGKKYVILFFYPLD----FTFVCPTEI--TAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (271)
Q Consensus 106 ~gkk~vvL~F~~~t----~Cp~C~~~l--~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (271)
.+| +++|+++ .. ||..|+..+ +.+.+..+ .++-+.+.+++..+
T Consensus 16 e~K-~llVylh-s~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~~e------------------------- 64 (116)
T cd02991 16 ELR-FLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAKPE------------------------- 64 (116)
T ss_pred hCC-EEEEEEe-CCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCChH-------------------------
Confidence 455 8999999 56 677886553 34444443 35656666665532
Q ss_pred CChHHHHHhCCccCCCCccceEEEEE---cCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 180 ITKSISKSYGVLIPDQGIALRGLFII---DKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 180 ~~~~~~~~ygv~~~~~g~~~P~~~lI---D~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
..+++..+++. ..|...+| +.+.+|+.+..+. ...++++..|+.+
T Consensus 65 -g~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G~----~~~~~ll~~L~~~ 112 (116)
T cd02991 65 -GYRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEGL----IQPEDLINRLTFI 112 (116)
T ss_pred -HHHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeCC----CCHHHHHHHHHHH
Confidence 15788889998 89999999 6666677775443 4678888888755
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.015 Score=51.01 Aligned_cols=97 Identities=19% Similarity=0.147 Sum_probs=53.2
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEe-----CCCHHHH----------HHHHHHhhhcCCCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVS-----TDSVFSH----------LAWVQTDRKSGGLG 170 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS-----~d~~~~~----------~~~~~~~~~~~~~~ 170 (271)
.++ .+|++|. -..||+|+.....+.++.+. .+|++.-|. .++.... ++| +.+.......
T Consensus 116 ~ak-~~I~vFt-Dp~CpyC~kl~~~l~~~~~~---g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~-~~~~~~~~~~ 189 (251)
T PRK11657 116 DAP-RIVYVFA-DPNCPYCKQFWQQARPWVDS---GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKAL-QEYEASGGKL 189 (251)
T ss_pred CCC-eEEEEEE-CCCChhHHHHHHHHHHHhhc---CceEEEEEeccccCcchHHHHHHHHhccCHHHHH-HHHHHhhhcc
Confidence 344 6777777 67799999988887765543 135543332 2222111 222 2221111100
Q ss_pred Ccccce--------EEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 171 DLKYPL--------IADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 171 ~~~f~~--------l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
+....- ..+.+.++++.+|+. .+|++|+.|.+|++..+
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~------GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGAN------ATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCEEEe
Confidence 000100 011235577888988 89999999999987655
|
|
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.026 Score=50.25 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=62.9
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.|+|.|+ ++||+..+...|-+.+..+.++++- -.+|-=.+| +|....++..
T Consensus 15 lvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VD--------------------------cd~e~~ia~k 67 (375)
T KOG0912|consen 15 LVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVD--------------------------CDKEDDIADK 67 (375)
T ss_pred EEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcc--------------------------cchhhHHhhh
Confidence 7899999 9999999999999999998887542 122221222 3445678899
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
|.|. ..|+.=|+ .||.+..+.+.+ .++++.+++.++
T Consensus 68 y~I~------KyPTlKvf-rnG~~~~rEYRg---~RsVeaL~efi~ 103 (375)
T KOG0912|consen 68 YHIN------KYPTLKVF-RNGEMMKREYRG---QRSVEALIEFIE 103 (375)
T ss_pred hccc------cCceeeee-eccchhhhhhcc---chhHHHHHHHHH
Confidence 9998 78988888 799988865433 356666666554
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.041 Score=51.16 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=58.0
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+..++.|| +.||++|....|.+.++...+++ -+.+..|..+ ....+.+.|
T Consensus 48 ~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~----------------------------~~~~~~~~y 97 (383)
T KOG0191|consen 48 SPWLVEFY-APWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCD----------------------------EHKDLCEKY 97 (383)
T ss_pred CceEEEEE-CCCCcchhhhchHHHHHHHHhcC-ceEEEEeCch----------------------------hhHHHHHhc
Confidence 37899999 99999999999999999888874 1333333222 346788899
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
++. ..|+..++.+..+++.. .. ..+.+.+...+.
T Consensus 98 ~i~------gfPtl~~f~~~~~~~~~--~~---~~~~~~~~~~~~ 131 (383)
T KOG0191|consen 98 GIQ------GFPTLKVFRPGKKPIDY--SG---PRNAESLAEFLI 131 (383)
T ss_pred CCc------cCcEEEEEcCCCceeec--cC---cccHHHHHHHHH
Confidence 998 88999888665222222 11 345666666544
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0069 Score=58.28 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=61.7
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHH-HHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEIT-AFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~-~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
.+-++| +|+|+|+ ++||-.|+..-+ -+++.+...+-.|+..+=+.+-. + ...+
T Consensus 470 a~~~~~-pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~---------~---------------~p~~ 523 (569)
T COG4232 470 AEAKAK-PVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA---------N---------------DPAI 523 (569)
T ss_pred HhCCCC-cEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC---------C---------------CHHH
Confidence 344554 9999999 999999986644 34455555555566555433211 0 1123
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.++-++||+. ..|++++++++|.-.....+ .-+.+.+++.++.
T Consensus 524 ~~lLk~~~~~------G~P~~~ff~~~g~e~~~l~g----f~~a~~~~~~l~~ 566 (569)
T COG4232 524 TALLKRLGVF------GVPTYLFFGPQGSEPEILTG----FLTADAFLEHLER 566 (569)
T ss_pred HHHHHHcCCC------CCCEEEEECCCCCcCcCCcc----eecHHHHHHHHHH
Confidence 5677888888 88999999999886655211 1245666666654
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.035 Score=38.56 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=22.3
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|..|| ++|||.|+...+.|.+ .|+.+-.|.++.
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~-------~~~~~~~idi~~ 34 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDK-------LGAAYEWVDIEE 34 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCceEEEeCcC
Confidence 55677 8999999987776543 355555555553
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.04 Score=45.01 Aligned_cols=105 Identities=11% Similarity=0.029 Sum_probs=47.1
Q ss_pred EecccccCCcEEEEEEecCCCCCChHHHHH-HHHH--HHHHHHhcCcEEEEEeCC--CHHHHHHHHHHhhhcCCCCCccc
Q 024201 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEIT-AFSD--RYTEFEKLNTEILGVSTD--SVFSHLAWVQTDRKSGGLGDLKY 174 (271)
Q Consensus 100 v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~-~L~~--~~~~~~~~gv~vv~VS~d--~~~~~~~~~~~~~~~~~~~~~~f 174 (271)
+....-.+| +++|.+. .+||..|..+.. .+.+ +.+.+. -.+|.|-+| ...++......+
T Consensus 30 ~~~Ak~e~K-pIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN---~~FI~VkvDree~Pdid~~y~~~----------- 93 (163)
T PF03190_consen 30 LEKAKKENK-PIFLSIG-YSWCHWCHVMERESFSDPEVAEYLN---RNFIPVKVDREERPDIDKIYMNA----------- 93 (163)
T ss_dssp HHHHHHHT---EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHH---HH-EEEEEETTT-HHHHHHHHHH-----------
T ss_pred HHHHHhcCC-cEEEEEE-ecCCcchhhhcccCcCCHHHHHHHh---CCEEEEEeccccCccHHHHHHHH-----------
Confidence 344444556 8999998 899999985543 2222 122221 134444444 322222211111
Q ss_pred ceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCC----CCCHHHHHHHHHHH
Q 024201 175 PLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAI----GRSVDETLRTLQAL 235 (271)
Q Consensus 175 ~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~----~~~~~e~l~~l~~l 235 (271)
.....|.. ..|.+++++++|+..+...+-... .....++|+.+..+
T Consensus 94 ---------~~~~~~~g------GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 94 ---------VQAMSGSG------GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp ---------HHHHHS---------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHH
T ss_pred ---------HHHhcCCC------CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHH
Confidence 11112444 689999999999999985442221 12455666655543
|
; PDB: 3IRA_A. |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=41.69 Aligned_cols=90 Identities=14% Similarity=0.119 Sum_probs=55.6
Q ss_pred ccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 105 YIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 105 ~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
-.+| +.+|.|- ...|++|...-..+ .++++-++. .+.++-+......... +.. +.. ...-..
T Consensus 40 ~~~K-ylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~-f~~--------g~k---ee~~s~ 104 (182)
T COG2143 40 PNDK-YLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVL-FKV--------GDK---EEKMST 104 (182)
T ss_pred ccCc-EEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceE-eec--------Cce---eeeecH
Confidence 3566 8888888 57799998654443 344444443 4666555443211100 000 000 111123
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
.++++.|++. .+|++++.|++|+-+...
T Consensus 105 ~ELa~kf~vr------stPtfvFfdk~Gk~Il~l 132 (182)
T COG2143 105 EELAQKFAVR------STPTFVFFDKTGKTILEL 132 (182)
T ss_pred HHHHHHhccc------cCceEEEEcCCCCEEEec
Confidence 6999999999 999999999999988874
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.1 Score=43.76 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=50.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-H-------------HHHHHHHHHhhhcCCCCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-V-------------FSHLAWVQTDRKSGGLGD 171 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~-------------~~~~~~~~~~~~~~~~~~ 171 (271)
.++ +.|++|. -..||+|+...+.+.+ .-.+-.+.++.+.... + +..++|.+.+........
T Consensus 76 ~~~-~~i~~f~-D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGK-RVVYVFT-DPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCC-EEEEEEE-CCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 355 6777777 6789999999888876 1122234555555432 1 112334333311110000
Q ss_pred c-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEE
Q 024201 172 L-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQ 212 (271)
Q Consensus 172 ~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~ 212 (271)
. ......+.+.++++.+|+. .+|+++ + .||+++
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~------gtPtii-~-~~G~~~ 184 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVN------GTPTIV-L-ADGRVV 184 (197)
T ss_pred ccccCchHHHHHHHHHHcCCC------cccEEE-E-CCCeEe
Confidence 0 0111122346788899998 899986 4 468764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.019 Score=54.63 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=29.1
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKL 141 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~ 141 (271)
-|||.|| +.||++|...-|.+.++.+.|++.
T Consensus 386 dVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 386 DVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred ceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 6999999 999999999999999999999874
|
|
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.025 Score=54.27 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=49.7
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCc-EEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNT-EILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv-~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.-+|.|| ++||+.|+...|.+.++.+.+++ .+| .|-+|.+-+ +.+..++|.
T Consensus 59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~--------------------------~~N~~lCRe 111 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD--------------------------EENVKLCRE 111 (606)
T ss_pred hHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc--------------------------hhhhhhHhh
Confidence 4588999 89999999999999998887764 233 344465533 135678999
Q ss_pred hCCccCCCCccceEEEEEcCC
Q 024201 188 YGVLIPDQGIALRGLFIIDKE 208 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~ 208 (271)
|+|. ..|+....-++
T Consensus 112 f~V~------~~Ptlryf~~~ 126 (606)
T KOG1731|consen 112 FSVS------GYPTLRYFPPD 126 (606)
T ss_pred cCCC------CCceeeecCCc
Confidence 9998 78888877766
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.12 Score=36.47 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=25.1
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
|+.|+ ..|||+|....+.|.++. +. ..+.++-|..+
T Consensus 1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL 36 (84)
T ss_pred CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence 35666 899999999988887765 21 12566666654
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.23 Score=32.98 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=25.7
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
|+.|. ..+||.|......| +++|+.+-.+.++.....
T Consensus 1 V~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~ 37 (60)
T PF00462_consen 1 VVVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEA 37 (60)
T ss_dssp EEEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHH
T ss_pred cEEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhH
Confidence 34556 78999998766555 455788888877764433
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.35 Score=40.91 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=25.1
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEE
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILG 147 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~ 147 (271)
.|+ +.|+.|+. -.||+|....+.+ ..+.+.+.+ ++.++-
T Consensus 36 ~~~-~~VvEffd-y~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~ 77 (207)
T PRK10954 36 AGE-PQVLEFFS-FYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTK 77 (207)
T ss_pred CCC-CeEEEEeC-CCCccHHHhcccccchHHHHHhCCC-CCeEEE
Confidence 355 66777774 4499999877655 555665543 555554
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.54 Score=45.95 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=50.2
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
..|-+|. ..+||.|+.....++++..+.. ++..-.|.... ..++++.|+
T Consensus 478 ~~i~v~~-~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~----------------------------~~~~~~~~~ 526 (555)
T TIGR03143 478 VNIKIGV-SLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSH----------------------------FPDLKDEYG 526 (555)
T ss_pred eEEEEEE-CCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcc----------------------------cHHHHHhCC
Confidence 3455556 8999999987777777776643 44433332221 257888999
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
+. ..|++|| ||++++. +. ...+++++.|
T Consensus 527 v~------~vP~~~i---~~~~~~~--G~----~~~~~~~~~~ 554 (555)
T TIGR03143 527 IM------SVPAIVV---DDQQVYF--GK----KTIEEMLELI 554 (555)
T ss_pred ce------ecCEEEE---CCEEEEe--eC----CCHHHHHHhh
Confidence 99 8898766 5666654 21 2567777665
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.4 Score=32.34 Aligned_cols=32 Identities=9% Similarity=0.050 Sum_probs=21.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..|. ..|||.|......|.+ .|+.+..+..|.
T Consensus 3 ~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 3 TVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 4455 7999999976554433 467777777664
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.39 Score=44.61 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=34.7
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCC
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTD 151 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d 151 (271)
+...++.|+ +.||++|+...|.+.++..+++. .++.+..+..+
T Consensus 162 ~~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 162 DADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred CcceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 335677888 89999999999999999998874 56777777665
|
|
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.58 Score=35.34 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=50.0
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++|+=. .+.||.....+.+|.+.+++..+. +.+..|-+-... +....++..|
T Consensus 20 ~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R------------------------~vSn~IAe~~ 73 (105)
T PF11009_consen 20 KPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYR------------------------PVSNAIAEDF 73 (105)
T ss_dssp SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGH------------------------HHHHHHHHHH
T ss_pred CcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCc------------------------hhHHHHHHHh
Confidence 37777777 688999999999999988887653 777766553211 1246899999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
||.. -.|..+|| +||++++..
T Consensus 74 ~V~H-----eSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 74 GVKH-----ESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp T---------SSEEEEE-ETTEEEEEE
T ss_pred CCCc-----CCCcEEEE-ECCEEEEEC
Confidence 9995 36999999 799999985
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.36 Score=34.57 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=29.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|..|. .+|||.|......|.++..++ +|+.+.-|.++.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 44555 799999999999999988765 377777777764
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.19 Score=38.68 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=35.6
Q ss_pred ecccc-cCCcEEEEEEecC-------CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 101 KLSDY-IGKKYVILFFYPL-------DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 101 ~Lsd~-~gkk~vvL~F~~~-------t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+++++ +|+ .+.+.|... +|||.|....|-+.+..+... .++.+|-|-+.+
T Consensus 18 ~~~~~~n~~-~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 18 TLKNVENGK-TIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGN 75 (128)
T ss_pred HHHHHhCCc-eEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecC
Confidence 34444 566 466666633 699999999999998887543 478888887754
|
|
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.77 Score=32.38 Aligned_cols=34 Identities=6% Similarity=0.109 Sum_probs=24.1
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.|..|. .+|||.|......|. +.|+.+..|.++.
T Consensus 9 ~V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~ 42 (79)
T TIGR02190 9 SVVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGN 42 (79)
T ss_pred CEEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCC
Confidence 345555 799999998776664 3477777777764
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.8 Score=30.59 Aligned_cols=41 Identities=7% Similarity=-0.058 Sum_probs=25.6
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHH
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 161 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~ 161 (271)
+.|. ..|||.|+.....|.+. ++.+.-+.++......++..
T Consensus 3 ~ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~ 43 (72)
T cd02066 3 VVFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELK 43 (72)
T ss_pred EEEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHH
Confidence 4455 78999999877666543 46666666665443434333
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.96 Score=32.29 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=22.1
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.|...|||+|......| +++|+.+--|.++.
T Consensus 5 lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~ 35 (81)
T PRK10329 5 IYTRNDCVQCHATKRAM-------ESRGFDFEMINVDR 35 (81)
T ss_pred EEeCCCCHhHHHHHHHH-------HHCCCceEEEECCC
Confidence 33379999998765555 34688887777764
|
|
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=90.62 E-value=1 Score=39.81 Aligned_cols=91 Identities=11% Similarity=0.159 Sum_probs=58.9
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+|||+|| -..++.|......|..++.+|. .+.|+-|..... + +...|.
T Consensus 148 ~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~----------------------------~-~~~~f~ 195 (265)
T PF02114_consen 148 WVVVHIY-EPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKC----------------------------P-ASENFP 195 (265)
T ss_dssp EEEEEEE--TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGC----------------------------C-TTTTS-
T ss_pred EEEEEEE-eCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhcc----------------------------C-cccCCc
Confidence 7889999 6779999999999999999998 588887755320 0 222344
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCC-CC--CHHHHHHHHHHHHHhh
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAI-GR--SVDETLRTLQALQYVQ 239 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~-~~--~~~e~l~~l~~l~~~~ 239 (271)
.. .+|+.+++ ++|.++...++-... +. ..+++-..|.....+.
T Consensus 196 ~~------~LPtllvY-k~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 196 DK------NLPTLLVY-KNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp TT------C-SEEEEE-ETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS
T ss_pred cc------CCCEEEEE-ECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 55 67888888 799999998763322 22 3455555554443333
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.49 Score=37.08 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=26.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEE
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG 147 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~ 147 (271)
++|+.|+ --+||+|....+.+.++..++.+ +.++.
T Consensus 7 ~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~ 41 (154)
T cd03023 7 VTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVF 41 (154)
T ss_pred EEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEE
Confidence 6777777 77899999999999888776643 44444
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=90.13 E-value=1.1 Score=31.65 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=44.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEe--CCCH------HHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVS--TDSV------FSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS--~d~~------~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
..|+ .-.||.|....+.+.++.... ..++.+.-+. .... ........... ......+.-.+ .+...
T Consensus 2 ~~f~-d~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l---~~~~~ 75 (98)
T cd02972 2 VEFF-DPLCPYCYLFEPELEKLLYAD-DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAA-QGKFEALHEAL---ADTAL 75 (98)
T ss_pred eEEE-CCCCHhHHhhhHHHHHHHhhc-CCcEEEEEeccccCCCCCcchHHHHHHHHHHHH-cCcHHHHHHHH---HHHHH
Confidence 4566 677999999999998887433 3356665543 3321 11111111110 00000000011 45677
Q ss_pred HHHhCCccCCCCccceEEEEEc
Q 024201 185 SKSYGVLIPDQGIALRGLFIID 206 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID 206 (271)
++.+|+. .+|++++-|
T Consensus 76 ~~~~g~~------g~Pt~v~~~ 91 (98)
T cd02972 76 ARALGVT------GTPTFVVNG 91 (98)
T ss_pred HHHcCCC------CCCEEEECC
Confidence 8888887 788887765
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.3 Score=31.93 Aligned_cols=36 Identities=11% Similarity=-0.052 Sum_probs=24.0
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
+.|. .+|||+|......|.++..++. ++.+.-|..+
T Consensus 3 ~vys-~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 3 VIFG-RPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEe-CCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 3444 7999999988877776654432 4566666655
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.96 Score=35.94 Aligned_cols=49 Identities=4% Similarity=-0.019 Sum_probs=35.3
Q ss_pred EecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHH-HhcCcEEEEEeC
Q 024201 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF-EKLNTEILGVST 150 (271)
Q Consensus 100 v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~-~~~gv~vv~VS~ 150 (271)
+.+-+-.++ ++|+.|+ --.||+|....+.+.++.+++ ....+.++.+.+
T Consensus 5 ~~~G~~~a~-~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAP-ITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTS-EEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCC-eEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 445555566 7788888 566999999999999999988 233577777655
|
... |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=89.57 E-value=1 Score=33.43 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=20.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|+.|- .+|||+|.....-|. +.|+.+-.|.+|.
T Consensus 10 Vvvys-k~~Cp~C~~ak~~L~-------~~~i~~~~vdid~ 42 (99)
T TIGR02189 10 VVIFS-RSSCCMCHVVKRLLL-------TLGVNPAVHEIDK 42 (99)
T ss_pred EEEEE-CCCCHHHHHHHHHHH-------HcCCCCEEEEcCC
Confidence 44555 699999987655443 3366655666654
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.28 E-value=1.5 Score=31.23 Aligned_cols=38 Identities=8% Similarity=-0.010 Sum_probs=23.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH--HHHHHHHH
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF--SHLAWVQT 162 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~--~~~~~~~~ 162 (271)
-.+||+|......|. .+|+.+.-|.++... +.+.+++.
T Consensus 8 ~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~ 47 (80)
T COG0695 8 KPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKR 47 (80)
T ss_pred CCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHH
Confidence 578999987765554 557766665554422 44444444
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=88.98 E-value=1.6 Score=30.03 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=21.9
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+|...+||.|......|. ++|+.+-.+.++.
T Consensus 3 ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~ 33 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALE-------EHGIAFEEINIDE 33 (72)
T ss_pred EEeCCCCHHHHHHHHHHH-------HCCCceEEEECCC
Confidence 344789999998777665 3577777776664
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.5 Score=30.02 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=21.4
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+.|. .+|||.|......|. +.|+.+.-+.++.
T Consensus 4 ~lys-~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~ 35 (72)
T cd03029 4 SLFT-KPGCPFCARAKAALQ-------ENGISYEEIPLGK 35 (72)
T ss_pred EEEE-CCCCHHHHHHHHHHH-------HcCCCcEEEECCC
Confidence 3344 689999998755554 3477776666654
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria | Back alignment and domain information |
|---|
Probab=88.64 E-value=12 Score=31.73 Aligned_cols=90 Identities=13% Similarity=0.253 Sum_probs=50.8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------HHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--------VFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--------~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
||..|..-.|.-|+..-..|.++..+ .+|-.++..+|- ++...+|-+.. ..
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQ------------------r~ 59 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYWDYLGWKDPFASPEFTQRQ------------------RA 59 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT-SSSS--TT--HHHHHHH------------------HH
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcccCCCCCCccCChhHHHHH------------------HH
Confidence 45666688999999999999998877 378888888873 12222222221 23
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.++.+|. .++.+|.++ | ||+.-.. +.+.+++...|+...
T Consensus 60 Y~~~~~~----~~vYTPQ~v-V--nG~~~~~-------g~~~~~~~~ai~~~~ 98 (202)
T PF06764_consen 60 YARRFGL----RSVYTPQVV-V--NGREHRV-------GSDRAAVEAAIQAAR 98 (202)
T ss_dssp HHHHTT-----S---SSEEE-E--TTTEEEE-------TT-HHHHHHHHHHHH
T ss_pred HHHHhCC----CCCcCCeEE-E--CCeeeee-------ccCHHHHHHHHHHhh
Confidence 3334433 355788874 5 6877765 356677777776554
|
The function of this family is unknown.; PDB: 2AXO_A. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.2 Score=33.67 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=15.0
Q ss_pred EEEEecCCCCCChHHHHHHHHHH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDR 134 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~ 134 (271)
|++|. .+|||+|.....-|.++
T Consensus 15 V~vys-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFV-KFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 44555 79999998766555443
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=5 Score=38.81 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=20.6
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTE 137 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~ 137 (271)
.-|..|. ...||+|+.....++++..+
T Consensus 118 ~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 118 FHFETYV-SLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred eEEEEEE-cCCCCCcHHHHHHHHHHHHh
Confidence 4566777 67899999888877777664
|
|
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=87.69 E-value=2.1 Score=29.78 Aligned_cols=35 Identities=6% Similarity=0.226 Sum_probs=22.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|+.|. ..|||.|......|.++.. .+.++=|..+.
T Consensus 2 v~~y~-~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 2 VVVFS-KSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEE-cCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 34455 7999999988777766543 24455555543
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=87.51 E-value=3.5 Score=28.20 Aligned_cols=32 Identities=6% Similarity=0.058 Sum_probs=22.0
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..|. .++||.|......|.+ +|+.+--+.++.
T Consensus 3 ~ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~ 34 (75)
T cd03418 3 EIYT-KPNCPYCVRAKALLDK-------KGVDYEEIDVDG 34 (75)
T ss_pred EEEe-CCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 3444 7999999887666643 477777776664
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=86.64 E-value=4.1 Score=27.95 Aligned_cols=28 Identities=7% Similarity=-0.078 Sum_probs=20.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..+||.|.....-|.+ .|+.+..+.++.
T Consensus 8 ~~~C~~C~ka~~~L~~-------~gi~~~~~di~~ 35 (73)
T cd03027 8 RLGCEDCTAVRLFLRE-------KGLPYVEINIDI 35 (73)
T ss_pred cCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence 5899999877666653 577777777764
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.49 E-value=1.2 Score=39.87 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=50.0
Q ss_pred cccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 102 LSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+.|.+....-++.|| +.||..|+..-|--.+.--++++-|..|-.=-.| --. -
T Consensus 37 FkdnkdddiW~VdFY-APWC~HCKkLePiWdeVG~elkdig~PikVGKlD-------------------aT~-------f 89 (468)
T KOG4277|consen 37 FKDNKDDDIWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLD-------------------ATR-------F 89 (468)
T ss_pred hhhcccCCeEEEEee-chhhhhcccccchhHHhCcchhhcCCceeecccc-------------------ccc-------c
Confidence 444455546788999 9999999988887777666666555332110000 111 1
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEE
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQ 212 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~ 212 (271)
..++..||+. ..|+.-++ ++|.++
T Consensus 90 ~aiAnefgiq------GYPTIk~~-kgd~a~ 113 (468)
T KOG4277|consen 90 PAIANEFGIQ------GYPTIKFF-KGDHAI 113 (468)
T ss_pred hhhHhhhccC------CCceEEEe-cCCeee
Confidence 5788999999 88998888 444443
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.14 E-value=8 Score=37.58 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=72.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
..+|..+|+..+. .+|..++|.|+.|..++||.|-... . . ....+.. +....++.++.|..+...
T Consensus 427 ~~pG~r~p~~~~~----~~~~~~~l~dl~g~~f~ll~~~~~~--~---~--~~~~~~~-~~~~~~~~~~~~~~~~~~--- 491 (547)
T PRK08132 427 PVPGAPAPDAPVR----ADGEPGWLLDLLGGGFTLLLFGDDA--A---A--AALLQAL-AAAALPVRVVAVVPAGAA--- 491 (547)
T ss_pred CCCCCCCCCCccc----CCCCceEHHHhcCCCEEEEEecCCc--h---h--hhhhhhh-hccCCceEEEEEecCccc---
Confidence 5689999999875 3455788999888878888775211 0 0 1111111 112224555555443211
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
. .+...+.|.++.+.+.|++. ....+||-+||.|-...- ....+.+.+.|+.
T Consensus 492 -----~--------~~~~~~~d~~~~~~~~~~~~-------~~~~~LvRPDg~va~~~~-----~~~~~~~~~~l~~ 543 (547)
T PRK08132 492 -----Q--------AAAGVLEDADGLAAERYDAR-------PGTVYLIRPDQHVAARWR-----TPDAAAVRAALAR 543 (547)
T ss_pred -----c--------cCcccccCcccHHHHHhCCC-------CCeEEEECCCceEEEEec-----CCCHHHHHHHHHH
Confidence 0 01124578899999999986 345899999999998842 2356777776664
|
|
| >COG3054 Predicted transcriptional regulator [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.95 E-value=2.3 Score=34.23 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=39.1
Q ss_pred ccc-ceEEcCChHHHH-HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 172 LKY-PLIADITKSISK-SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 172 ~~f-~~l~D~~~~~~~-~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++| .++.|..+ +++ +|++.-. .-..+++|++|+|.++.-+.+. ...+.+++..|..|
T Consensus 124 ~pwSq~vlD~~g-vak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaLt-~aevQ~Vi~ll~~l 182 (184)
T COG3054 124 YPWSQFVLDSNG-VAKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGALT-QAEVQQVIDLLQKL 182 (184)
T ss_pred CCceeeEEccch-hhhhhhccccc-----cceEEEEcCCCcEEEEecCCcc-HHHHHHHHHHHHHh
Confidence 344 36778887 555 8998742 3458999999999999744332 34567777777654
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=84.85 E-value=5.9 Score=29.18 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=22.8
Q ss_pred EEEEEEec---CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 110 YVILFFYP---LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 110 ~vvL~F~~---~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.+||+-.. .+|||+|.....-|.+ .|+.+..+.++.
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~ 51 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLE 51 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCC
Confidence 46666542 2799999876555543 467766666654
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=83.13 E-value=5.6 Score=28.07 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=19.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..|||+|......|.+ +|+.+.-+.++.
T Consensus 9 ~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~ 36 (83)
T PRK10638 9 KATCPFCHRAKALLNS-------KGVSFQEIPIDG 36 (83)
T ss_pred CCCChhHHHHHHHHHH-------cCCCcEEEECCC
Confidence 6899999877665553 467666666664
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=83.03 E-value=15 Score=35.54 Aligned_cols=119 Identities=12% Similarity=0.095 Sum_probs=74.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|..+|+..+. ..+|....++++.|...+||.|.. . +.. .+.. ...+.+...+..+|.+......
T Consensus 411 ~~~G~~~p~~~~~---~~~~~~~~~d~~~~~~~~ll~~~~-~--~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~--- 477 (538)
T PRK06183 411 SPVGTLFPQPRVE---LGGGDRGLLDDVLGPGFAVLGWGC-D--PLA--GLSD--EQRARWRALGARFVQVVPAVQA--- 477 (538)
T ss_pred CCcccCcCCCeeE---cCCCCcccchhccCCceEEEEecC-C--chh--cCCH--HHHHHHHHcCCeEEEEeccccc---
Confidence 5689999999886 334444567888888788887742 1 211 1111 1112244457777777543211
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.+ -....+.|.++.+.+.|+.. -...+||-+|+.|-... .....+.+++.|.
T Consensus 478 ~~------------~~~~~~~d~~g~~~~~~~~~-------~~~~~lvRPD~~v~~~~-----~~~~~~~~~~~l~ 529 (538)
T PRK06183 478 HT------------AQDDHDSDVDGALRAWLARH-------GASAVLLRPDRYVAAAA-----DAQTLGALLAALA 529 (538)
T ss_pred cc------------CCCceeecCCchHHHHHHhC-------CCEEEEECCCEEEEEee-----CHHHHHHHHHHHH
Confidence 01 12346789999999999976 34589999999998763 1224566666554
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=82.57 E-value=13 Score=36.01 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=20.3
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEF 138 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~ 138 (271)
.-|..|. ...||+|+.....++++..+.
T Consensus 119 ~~i~~f~-~~~Cp~Cp~~v~~~~~~a~~~ 146 (515)
T TIGR03140 119 LHFETYV-SLTCQNCPDVVQALNQMALLN 146 (515)
T ss_pred eEEEEEE-eCCCCCCHHHHHHHHHHHHhC
Confidence 5577777 677999997777776666553
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=82.35 E-value=5.3 Score=28.88 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=21.1
Q ss_pred EEEEEEec---CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 110 YVILFFYP---LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 110 ~vvL~F~~---~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+|||+--. ..|||+|......|.+ .|+.+-.|.++.
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~~ 47 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDILE 47 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcCC
Confidence 56655441 1589999876555443 356666666543
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >PRK12559 transcriptional regulator Spx; Provisional | Back alignment and domain information |
|---|
Probab=81.84 E-value=6.1 Score=30.97 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=37.6
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--C--CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d--~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
+|...+|+.|+....-| +++|+.+-.+.. + +.+++..|++.. +.++.-+....+..++.++.
T Consensus 4 iY~~~~C~~crkA~~~L-------~~~gi~~~~~di~~~~~s~~el~~~l~~~-------~~g~~~lin~~~~~~k~l~~ 69 (131)
T PRK12559 4 LYTTASCASCRKAKAWL-------EENQIDYTEKNIVSNSMTVDELKSILRLT-------EEGATEIISTRSKTFQDLNI 69 (131)
T ss_pred EEeCCCChHHHHHHHHH-------HHcCCCeEEEEeeCCcCCHHHHHHHHHHc-------CCCHHHHHhcCcHHHHhCCC
Confidence 44478899999865444 444666555543 3 456778888864 23333333445666666665
Q ss_pred c
Q 024201 191 L 191 (271)
Q Consensus 191 ~ 191 (271)
.
T Consensus 70 ~ 70 (131)
T PRK12559 70 N 70 (131)
T ss_pred C
Confidence 4
|
|
| >PRK01655 spxA transcriptional regulator Spx; Reviewed | Back alignment and domain information |
|---|
Probab=81.55 E-value=3.2 Score=32.50 Aligned_cols=64 Identities=6% Similarity=-0.010 Sum_probs=37.8
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--CC--HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 114 FFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--DS--VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 114 ~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d~--~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|...+|+.|+....-| .++|+.+..+.+ ++ .+++.+|.+.. +.++.-+....+...+.++
T Consensus 3 ~iY~~~~C~~C~ka~~~L-------~~~gi~~~~idi~~~~~~~~eL~~~l~~~-------~~g~~~lin~~~~~~k~l~ 68 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWL-------EEHDIPFTERNIFSSPLTIDEIKQILRMT-------EDGTDEIISTRSKVFQKLN 68 (131)
T ss_pred EEEeCCCChHHHHHHHHH-------HHcCCCcEEeeccCChhhHHHHHHHHHHh-------cCCHHHHHhcCcHHHHhCC
Confidence 344478999998865443 445766666554 32 35667777765 3344334445566666665
Q ss_pred Cc
Q 024201 190 VL 191 (271)
Q Consensus 190 v~ 191 (271)
..
T Consensus 69 ~~ 70 (131)
T PRK01655 69 VD 70 (131)
T ss_pred CC
Confidence 54
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=81.02 E-value=5.1 Score=27.79 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=20.9
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..|. ..+||.|......|.+ .|+.+--+.++.
T Consensus 2 ~ly~-~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~ 33 (79)
T TIGR02181 2 TIYT-KPYCPYCTRAKALLSS-------KGVTFTEIRVDG 33 (79)
T ss_pred EEEe-cCCChhHHHHHHHHHH-------cCCCcEEEEecC
Confidence 3455 7999999887766653 356555555543
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.34 E-value=20 Score=34.34 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=68.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEeccccc-CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYI-GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~-gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|..+|+..+. ..+|+.+++-|+. +.+++||.|-...+ .. . ...++.++.|....
T Consensus 386 ~~~G~r~p~~~~~---~~~~~~~~l~d~~~~~~~~ll~~~~~~~--~~----------~---~~~~~~~~~~~~~~---- 443 (502)
T PRK06184 386 LRAGDRAPDAPLL---GAAGQPTRLFDLFRGPHWTLLAFGAGAA--AI----------L---ARRGLRIHRVGDAA---- 443 (502)
T ss_pred CCCcCCCCCchhc---cCCCceeeHHHhhCCCcEEEEEecCCch--hh----------h---hhcCceEEEecccC----
Confidence 6689999999886 3355566666654 44588887642222 00 0 12356666553221
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
....+.|.++.+.+.|++. ....+||-|||-|-+... ....+.+.+.|+.+
T Consensus 444 ----------------~~~~~~d~~g~~~~~~~~~-------~~~~~lvRPDg~v~~~~~-----~~~~~~~~~~l~~~ 494 (502)
T PRK06184 444 ----------------EGGDLVDDAGHFRDAYGLT-------GGTLVLVRPDGYVGLIAA-----GDDAAALEAYLARV 494 (502)
T ss_pred ----------------CCCceeCCCccHHHHhcCC-------CCcEEEECCCcceEEEec-----CCCHHHHHHHHHHh
Confidence 0113578889999999986 345799999999998741 23567777777654
|
|
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=80.24 E-value=17 Score=28.32 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=52.7
Q ss_pred CcEEEEEEecCC--CCCChH-HHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 108 KKYVILFFYPLD--FTFVCP-TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 108 kk~vvL~F~~~t--~Cp~C~-~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
++..||.|.+.. .-+-+. .....|.++.++|+.+.+.++-|..+. ...+
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~----------------------------~~~~ 71 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA----------------------------QLDL 71 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc----------------------------cHHH
Confidence 347788887532 112243 335667777777776555555554432 1237
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+.||+... ..|.+++++.++. +|....+ .-..+.+.+.++.+
T Consensus 72 ~~~fgl~~~----~~P~v~i~~~~~~-KY~~~~~---~~t~e~i~~Fv~~~ 114 (130)
T cd02983 72 EEALNIGGF----GYPAMVAINFRKM-KFATLKG---SFSEDGINEFLREL 114 (130)
T ss_pred HHHcCCCcc----CCCEEEEEecccC-ccccccC---ccCHHHHHHHHHHH
Confidence 777887622 4789999998875 5553211 12345666666554
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 271 | ||||
| 1qmv_A | 197 | Thioredoxin Peroxidase B From Red Blood Cells Lengt | 8e-64 | ||
| 1qq2_A | 199 | Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi | 2e-61 | ||
| 2rii_A | 199 | Crystal Structure Of Human Peroxiredoxin I In Compl | 5e-61 | ||
| 3qpm_A | 240 | Crystal Structure Of Peroxiredoxin Prx4 From Pseudo | 2e-60 | ||
| 2z9s_A | 199 | Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI | 1e-59 | ||
| 3tkp_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 1e-58 | ||
| 3tjf_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C51a Mu | 1e-58 | ||
| 3tjb_A | 254 | Crystal Structure Of Wild-Type Human Peroxiredoxin | 1e-58 | ||
| 2pn8_A | 211 | Crystal Structure Of Human Peroxiredoxin 4 (Thiored | 2e-58 | ||
| 3tkr_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 2e-58 | ||
| 1zye_A | 220 | Crystal Strucutre Analysis Of Bovine Mitochondrial | 5e-58 | ||
| 3hy2_A | 206 | Crystal Structure Of Sulfiredoxin In Complex With P | 6e-58 | ||
| 3tjk_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C245a M | 2e-57 | ||
| 3tks_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 3e-57 | ||
| 1uul_A | 202 | Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr | 6e-57 | ||
| 3tjj_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C245a M | 5e-56 | ||
| 2h01_A | 192 | Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I | 4e-54 | ||
| 3tue_A | 219 | The Structure Of Tryparedoxin Peroxidase I From Lei | 8e-54 | ||
| 2h66_A | 213 | The Crystal Structure Of Plasmodium Vivax 2-Cys Per | 6e-53 | ||
| 3ztl_A | 222 | Crystal Structure Of Decameric Form Of Peroxiredoxi | 7e-53 | ||
| 3zvj_A | 219 | Crystal Structure Of High Molecular Weight (Hmw) Fo | 1e-52 | ||
| 3zvj_D | 219 | Crystal Structure Of High Molecular Weight (Hmw) Fo | 2e-52 | ||
| 2c0d_A | 221 | Structure Of The Mitochondrial 2-Cys Peroxiredoxin | 2e-49 | ||
| 3sbc_A | 216 | Crystal Structure Of Saccharomyces Cerevisiae Tsa1c | 2e-48 | ||
| 1e2y_A | 188 | Tryparedoxin Peroxidase From Crithidia Fasciculata | 1e-46 | ||
| 1zof_A | 198 | Crystal Structure Of Alkyl Hydroperoxide-Reductase | 9e-46 | ||
| 1we0_A | 187 | Crystal Structure Of Peroxiredoxin (Ahpc) From Amph | 2e-35 | ||
| 1yep_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 6e-35 | ||
| 1yex_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 9e-35 | ||
| 1yf1_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 1e-34 | ||
| 1yf0_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 2e-34 | ||
| 1n8j_A | 186 | Crystal Structure Of Ahpc With Active Site Cysteine | 8e-34 | ||
| 3emp_A | 186 | Crystal Structure Of The S-Acetanilide Modified For | 8e-34 | ||
| 2bmx_A | 195 | Mycobacterium Tuberculosis Ahpc Length = 195 | 5e-29 | ||
| 2e2g_A | 250 | Crystal Structure Of Archaeal Peroxiredoxin, Thiore | 4e-24 | ||
| 3a2v_A | 249 | Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp | 4e-24 | ||
| 3a5w_A | 249 | Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 | 5e-24 | ||
| 1x0r_A | 249 | Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len | 1e-23 | ||
| 3a2w_A | 249 | Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero | 7e-23 | ||
| 2zct_A | 249 | Oxidation Of Archaeal Peroxiredoxin Involves A Hype | 8e-23 | ||
| 2e2m_A | 250 | Crystal Structure Of Archaeal Peroxiredoxin, Thiore | 8e-23 | ||
| 2cv4_A | 250 | Crystal Structure Of An Archaeal Peroxiredoxin From | 3e-22 | ||
| 2v2g_A | 233 | Crystal Structure Of The C45s Mutant Of The Peroxir | 7e-20 | ||
| 1xcc_A | 220 | 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2 | 2e-19 | ||
| 3tb2_A | 220 | 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2 | 5e-18 | ||
| 1prx_A | 224 | Horf6 A Novel Human Peroxidase Enzyme Length = 224 | 1e-16 | ||
| 1xxu_A | 153 | Crystal Structure Of Ahpe From Mycrobacterium Tuber | 9e-16 | ||
| 2ywn_A | 157 | Crystal Structure Of Peroxiredoxin-Like Protein Fro | 2e-15 | ||
| 1xvw_A | 160 | Crystal Structure Of Ahpe From Mycobacterium Tuberc | 2e-14 | ||
| 3drn_A | 161 | The Crystal Structure Of Bcp1 From Sulfolobus Sulfa | 1e-13 | ||
| 3hjp_A | 164 | The Crystal Structure Of Bcp4 From Sulfolobus Solfa | 5e-12 | ||
| 2cx3_A | 164 | Crystal Structure Of A Bacterioferritin Comigratory | 1e-10 | ||
| 4gqc_A | 164 | Crystal Structure Of Aeropyrum Pernix Peroxiredoxin | 1e-10 | ||
| 3ixr_A | 179 | Crystal Structure Of Xylella Fastidiosa Prxq C47s M | 2e-06 | ||
| 3gkk_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 2e-06 | ||
| 3gkm_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 1e-05 | ||
| 3p7x_A | 166 | Crystal Structure Of An Atypical Two-Cysteine Perox | 3e-05 | ||
| 3gkn_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 3e-05 | ||
| 4eo3_A | 322 | Peroxiredoxin Nitroreductase Fusion Enzyme Length = | 2e-04 |
| >pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197 | Back alignment and structure |
|
| >pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199 | Back alignment and structure |
|
| >pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199 | Back alignment and structure |
|
| >pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240 | Back alignment and structure |
|
| >pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199 | Back alignment and structure |
|
| >pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246 | Back alignment and structure |
|
| >pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254 | Back alignment and structure |
|
| >pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254 | Back alignment and structure |
|
| >pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211 | Back alignment and structure |
|
| >pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246 | Back alignment and structure |
|
| >pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220 | Back alignment and structure |
|
| >pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206 | Back alignment and structure |
|
| >pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254 | Back alignment and structure |
|
| >pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246 | Back alignment and structure |
|
| >pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202 | Back alignment and structure |
|
| >pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254 | Back alignment and structure |
|
| >pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192 | Back alignment and structure |
|
| >pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219 | Back alignment and structure |
|
| >pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin Length = 213 | Back alignment and structure |
|
| >pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222 | Back alignment and structure |
|
| >pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219 | Back alignment and structure |
|
| >pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219 | Back alignment and structure |
|
| >pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221 | Back alignment and structure |
|
| >pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216 | Back alignment and structure |
|
| >pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188 | Back alignment and structure |
|
| >pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198 | Back alignment and structure |
|
| >pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187 | Back alignment and structure |
|
| >pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186 | Back alignment and structure |
|
| >pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186 | Back alignment and structure |
|
| >pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195 | Back alignment and structure |
|
| >pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250 | Back alignment and structure |
|
| >pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249 | Back alignment and structure |
|
| >pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249 | Back alignment and structure |
|
| >pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249 | Back alignment and structure |
|
| >pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249 | Back alignment and structure |
|
| >pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249 | Back alignment and structure |
|
| >pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250 | Back alignment and structure |
|
| >pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250 | Back alignment and structure |
|
| >pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233 | Back alignment and structure |
|
| >pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220 | Back alignment and structure |
|
| >pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220 | Back alignment and structure |
|
| >pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224 | Back alignment and structure |
|
| >pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 153 | Back alignment and structure |
|
| >pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From Sulfolobus Tokodaii Length = 157 | Back alignment and structure |
|
| >pdb|1XVW|A Chain A, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 160 | Back alignment and structure |
|
| >pdb|3DRN|A Chain A, The Crystal Structure Of Bcp1 From Sulfolobus Sulfataricus Length = 161 | Back alignment and structure |
|
| >pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus Length = 164 | Back alignment and structure |
|
| >pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory Protein Peroxiredoxin From The Aeropyrum Pernix K1 (Form-1 Crystal) Length = 164 | Back alignment and structure |
|
| >pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q Enzyme In Fully- Folded And Locally-unfolded Conformations Length = 164 | Back alignment and structure |
|
| >pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant Length = 179 | Back alignment and structure |
|
| >pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163 | Back alignment and structure |
|
| >pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163 | Back alignment and structure |
|
| >pdb|3P7X|A Chain A, Crystal Structure Of An Atypical Two-Cysteine Peroxiredoxin (Saouhsc_01822) From Staphylococcus Aureus Nctc8325 Length = 166 | Back alignment and structure |
|
| >pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped Intermediate/ligand Complex Structures Length = 163 | Back alignment and structure |
|
| >pdb|4EO3|A Chain A, Peroxiredoxin Nitroreductase Fusion Enzyme Length = 322 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216 | Back alignment and structure |
|---|
Score = 374 bits (962), Expect = e-133
Identities = 102/212 (48%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 59 SRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPL 118
S S +V + V AP F AV D F V L Y GK YV+L F PL
Sbjct: 4 SHHHHHHSSGLVPRGSHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGK-YVVLAFIPL 62
Query: 119 DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178
FTFV PTEI AFS+ +FE+ ++L STDS +S LAW RK GGLG + PL+A
Sbjct: 63 AFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLA 122
Query: 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYV 238
D S+S+ YGVLI ++G+ALRGLFIID +GVI+H TIN+L +GR+VDE LR ++A Q+
Sbjct: 123 DTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWT 182
Query: 239 QENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270
+N V P W PG ++KP + SKEYF A
Sbjct: 183 DKN-GTVLPCNWTPGAATIKPTVEDSKEYFEA 213
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 371 bits (956), Expect = e-132
Identities = 106/208 (50%), Positives = 140/208 (67%), Gaps = 3/208 (1%)
Query: 64 SRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFV 123
S V + + AP + AV D EF +KL+DY GK Y++ FFYPLDFTFV
Sbjct: 6 HHSSGVDLGTENLY-FQSMPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFV 63
Query: 124 CPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183
CPTEI AF DR EF +NTE++ S DS F+HLAW+ T R+ GGLG ++ PL++D+T
Sbjct: 64 CPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQ 123
Query: 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPD 243
ISK YGV + D G LRGLFIID +G+++ T+N+L +GRSVDETLR +QA QY ++
Sbjct: 124 ISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKH-G 182
Query: 244 EVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
EVCPAGWKPG +++ PDP +YF +
Sbjct: 183 EVCPAGWKPGSETIIPDPAGKLKYFDKL 210
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-132
Identities = 111/217 (51%), Positives = 143/217 (65%), Gaps = 2/217 (0%)
Query: 55 PVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILF 114
+ G R + + AP + AV + EF +KLSDY GK Y++ F
Sbjct: 25 GGHVYPGEAFRVPVSDHSLHLSKAKISKPAPQWEGTAVINGEFKELKLSDYRGK-YLVFF 83
Query: 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKY 174
FYPLDFTFVCPTEI AFSDR EF +NTE++ S DS F+HLAW+ T RK GGLG +K
Sbjct: 84 FYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKI 143
Query: 175 PLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234
PL++D+T ISK YGV + DQG LRGLFIID++GV++ T+N+L +GRSVDETLR +QA
Sbjct: 144 PLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQA 203
Query: 235 LQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271
QY ++ EVCPAGWKPG ++ PDP +YF +
Sbjct: 204 FQYTDKH-GEVCPAGWKPGSDTIIPDPSGKLKYFDKM 239
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220 | Back alignment and structure |
|---|
Score = 371 bits (955), Expect = e-132
Identities = 105/194 (54%), Positives = 138/194 (71%), Gaps = 2/194 (1%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
P V AP F AV EF + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+ +E
Sbjct: 27 PAVTQHAPYFKGTAVVSGEFKEISLDDFKGK-YLVLFFYPLDFTFVCPTEIIAFSDKASE 85
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
F +N E++ VS DS FSHLAW+ T RK+GGLG + L++D+TK IS+ YGVL+ G+
Sbjct: 86 FHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGL 145
Query: 198 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSM 257
ALRGLFIID GVI+H ++N+L +GRSV+ETLR ++A Q+V+ + EV PA W P ++
Sbjct: 146 ALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAH-GEVSPANWTPESPTI 204
Query: 258 KPDPKLSKEYFAAI 271
KP P S+EYF +
Sbjct: 205 KPHPTASREYFEKV 218
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254 | Back alignment and structure |
|---|
Score = 371 bits (955), Expect = e-131
Identities = 111/252 (44%), Positives = 154/252 (61%), Gaps = 7/252 (2%)
Query: 25 SSSSISPSQNLTIPRSFSGLRNPLKSQVPRPVSLSRGS----RSRKSFVVKASVEIP-PL 79
S SQ+ +PR +++ + G + + V S+ +
Sbjct: 4 SHHHHHHSQDPLVPRGSWETEERPRTREEECHFYAGGQVYPGEASRVSVADHSLHLSKAK 63
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+ AP + AV D EF +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR EF
Sbjct: 64 ISKPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRLEEFR 122
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
+NTE++ S DS F+HLAW+ T R+ GGLG ++ PL++D+T ISK YGV + D G L
Sbjct: 123 SINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTL 182
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID +G+++ T+N+L +GRSVDETLR +QA QY ++ EV PAGWKPG +++ P
Sbjct: 183 RGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVAPAGWKPGSETIIP 241
Query: 260 DPKLSKEYFAAI 271
DP +YF +
Sbjct: 242 DPAGKLKYFDKL 253
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213 | Back alignment and structure |
|---|
Score = 369 bits (949), Expect = e-131
Identities = 99/196 (50%), Positives = 132/196 (67%), Gaps = 3/196 (1%)
Query: 77 PPLVGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY 135
P VG AP F AEAVF D F V L+ +IGKKYV+L+FYPLDFTFVCP+EI A
Sbjct: 20 PTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKAL 79
Query: 136 TEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ 195
F + N E+LG S DS ++HLAW +T GG+G++K+ L++DITKSISK Y VL D
Sbjct: 80 DAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDD- 138
Query: 196 GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDK 255
++LR +ID G++QH +NNLAIGRSVDE LR + A+Q+ ++ +VCPA W+ G
Sbjct: 139 SVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYG-DVCPANWQKGKV 197
Query: 256 SMKPDPKLSKEYFAAI 271
SMKP + +Y + +
Sbjct: 198 SMKPSEEGVAQYLSTL 213
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221 | Back alignment and structure |
|---|
Score = 369 bits (949), Expect = e-131
Identities = 95/219 (43%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 53 PRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYV 111
S G + + LV A +F A+ + + E INV LS +IG+KY
Sbjct: 7 HHHHHHSSGHIEGRHMKL-------SLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYC 59
Query: 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGD 171
L FYPL++TFVCPTEI F+ +FE N E+LG+S DSV+SHLAW + GG+G+
Sbjct: 60 CLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGN 119
Query: 172 LKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231
+++ L++DI K ISK+Y VL D ALRGLFIIDK G ++H T+N+L IGR+V E LRT
Sbjct: 120 VEFTLVSDINKDISKNYNVLY-DNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRT 178
Query: 232 LQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270
+ ++ +V + EVCP WK G K+ KP + +Y
Sbjct: 179 IDSIIHV-DTSGEVCPINWKKGQKAFKPTTESLIDYMNN 216
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222 | Back alignment and structure |
|---|
Score = 364 bits (937), Expect = e-129
Identities = 100/202 (49%), Positives = 128/202 (63%), Gaps = 2/202 (0%)
Query: 61 GSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF 120
+ + L AP+F +AV + EF + L DY GK YV+LFFYP DF
Sbjct: 23 RDLYDDDDKDRWGSTMVLLPNRPAPEFKGQAVINGEFKEICLKDYRGK-YVVLFFYPADF 81
Query: 121 TFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180
TFVCPTEI AFSD+ EF N +++ STDS +SHLAW DRKSGGLG +K PL+AD
Sbjct: 82 TFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADR 141
Query: 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQE 240
+ ISK+YGV + G A RGLFIID G+++ TIN+ +GRSVDETLR L A Q+V++
Sbjct: 142 KQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEK 201
Query: 241 NPDEVCPAGWKPGDKSMKPDPK 262
+ EVCP WK G +K + K
Sbjct: 202 H-GEVCPVNWKRGQHGIKVNQK 222
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202 | Back alignment and structure |
|---|
Score = 362 bits (932), Expect = e-129
Identities = 104/193 (53%), Positives = 136/193 (70%), Gaps = 3/193 (1%)
Query: 80 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
+ APDF A+ + F V L+ Y GK +++LFFYP+DFTFVCPTEI FSDR EF
Sbjct: 8 DLHPAPDFNETALMPNGTFKKVALTSYKGK-WLVLFFYPMDFTFVCPTEICQFSDRVKEF 66
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
+ E+L S DS +SHLAW +RK GGLG + P++AD TK I KSYGVL + G+A
Sbjct: 67 SDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVA 126
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMK 258
RGLFIID + ++ T+N+L +GR VDE LR ++A Q+V+++ EVCPA WKPGDK+MK
Sbjct: 127 YRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKH-GEVCPANWKPGDKTMK 185
Query: 259 PDPKLSKEYFAAI 271
PDP+ SKEYF A+
Sbjct: 186 PDPEKSKEYFGAV 198
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198 | Back alignment and structure |
|---|
Score = 361 bits (928), Expect = e-128
Identities = 92/193 (47%), Positives = 123/193 (63%), Gaps = 4/193 (2%)
Query: 79 LVGNTAPDFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
+V APDF A AV + + +LS +GK VILFF+P DFTFVCPTEI AF R
Sbjct: 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
+F + ++GVS DS H AW T + GG+G + +P++ADITKSIS+ Y VL +
Sbjct: 62 DFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-A 120
Query: 197 IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 256
IALRG F+IDK ++H+ IN+L +GR+ DE LR + AL + +E+ EVCPAGW+ GDK
Sbjct: 121 IALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEH-GEVCPAGWRKGDKG 179
Query: 257 MKPDPKLSKEYFA 269
MK + EY
Sbjct: 180 MKATHQGVAEYLK 192
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-128
Identities = 100/193 (51%), Positives = 135/193 (69%), Gaps = 3/193 (1%)
Query: 80 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
AP F AEAVF D F V LSD+IGKKYV+L+FYPLDFTFVCP+EI A F
Sbjct: 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
++ N E+LG S DS F+HLAW +T GG+G++K+ LI+DI+KSI++SY VL + +A
Sbjct: 62 KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNE-SVA 120
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMK 258
LR +IDK+GV+QH +NNLA+GRSVDE LR + ALQ+ ++ +VCPA W+ G +SMK
Sbjct: 121 LRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYG-DVCPANWQKGKESMK 179
Query: 259 PDPKLSKEYFAAI 271
P + +Y + +
Sbjct: 180 PSEEGVAKYLSNL 192
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186 | Back alignment and structure |
|---|
Score = 351 bits (903), Expect = e-124
Identities = 68/185 (36%), Positives = 106/185 (57%), Gaps = 4/185 (2%)
Query: 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
L+ F +A + EFI V D G+ + + FFYP DFTFV PTE+ +D Y E
Sbjct: 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVSPTELGDVADHYEEL 60
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
+KL ++ VSTD+ F+H AW + + +KY +I D T ++++++ + D+G+A
Sbjct: 61 QKLGVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLA 117
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMK 258
R F++D +G+IQ + IGR + LR ++A QYV +P EVCPA WK G+ ++
Sbjct: 118 DRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLA 177
Query: 259 PDPKL 263
P L
Sbjct: 178 PSLDL 182
|
| >1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188 | Back alignment and structure |
|---|
Score = 351 bits (902), Expect = e-124
Identities = 92/183 (50%), Positives = 125/183 (68%), Gaps = 3/183 (1%)
Query: 78 PLVGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
+ + AP+F A+ + F V LS Y GK YV+LFFYP+DFTFVCPTEI FSD
Sbjct: 6 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGK-YVVLFFYPMDFTFVCPTEIIQFSDDAK 64
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
F ++NTE++ S DS +SHL W DRK GGLG + P++AD TK+I+++YGVL D G
Sbjct: 65 RFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSG 124
Query: 197 IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 256
+A RG+FIID G ++ IN++ IGR+V+E +R ++ALQ+V+E+ EVCPA WK GD
Sbjct: 125 VAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEH-GEVCPANWKKGDAK 183
Query: 257 MKP 259
K
Sbjct: 184 KKE 186
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187 | Back alignment and structure |
|---|
Score = 351 bits (902), Expect = e-124
Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 5/186 (2%)
Query: 79 LVGNTAPDFAAEAVFD-QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
L+G F A+A ++F V +D GK + I+ FYP DF+FVCPTE+ Y E
Sbjct: 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGK-WSIVVFYPADFSFVCPTELEDVQKEYAE 60
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
+KL E+ VSTD+ F H AW S +G ++Y +I D +++IS+ + VL + G+
Sbjct: 61 LKKLGVEVYSVSTDTHFVHKAW---HENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGL 117
Query: 198 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSM 257
A RG FIID +GVIQ IN IGR + ++A QYV+ENP EVCPA W+ G +++
Sbjct: 118 ADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETL 177
Query: 258 KPDPKL 263
KP +
Sbjct: 178 KPSLDI 183
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195 | Back alignment and structure |
|---|
Score = 323 bits (829), Expect = e-113
Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 22/201 (10%)
Query: 78 PLVGNTAPDFAAEAVFDQE------------FINVKLSDYIGKKYVILFFYPLDFTFVCP 125
+G+ P + A+ + F + ++ GK + ++FF+P DFTFVCP
Sbjct: 4 LTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGK-WRVVFFWPKDFTFVCP 62
Query: 126 TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185
TEI AFS EFE + +ILGVS DS F+H W + L L +P+++DI + +S
Sbjct: 63 TEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQW---RAQHNDLKTLPFPMLSDIKRELS 119
Query: 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEV 245
++ GVL D G+A R FI+D IQ + ++GR+VDE LR L ALQ DE+
Sbjct: 120 QAAGVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ-----SDEL 173
Query: 246 CPAGWKPGDKSMKPDPKLSKE 266
C + W+ GD ++ L
Sbjct: 174 CASNWRKGDPTLDAGELLKAS 194
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233 | Back alignment and structure |
|---|
Score = 294 bits (756), Expect = e-101
Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 15/200 (7%)
Query: 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
+G P+F A++ + +K D++G + +LF +P DFT V TE+ +F
Sbjct: 4 TLGEVFPNFEADSTIGK----LKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDF 59
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGL-GDLKYPLIADITKSISKSYGVLIPDQ-- 195
+K +++ +S D+V H W + + G+ GD+ YP+IAD T+ ++ G++ PD+
Sbjct: 60 KKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERT 119
Query: 196 ----GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWK 251
+ R +FII + ++ S + GR+ E LR + +LQ + PA W+
Sbjct: 120 STGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQKK-VATPADWQ 178
Query: 252 PGDKSMKPDP---KLSKEYF 268
PGD+ M + +K F
Sbjct: 179 PGDRCMVVPGVSAEEAKTLF 198
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220 | Back alignment and structure |
|---|
Score = 290 bits (744), Expect = e-100
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 14/202 (6%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
+G T P+F A+A +L YI + ILF +P DFT VC TE+ +
Sbjct: 2 GYHLGATFPNFTAKASGIDGDF--ELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHE 59
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
+F KLN +++G S +S SH W++ + G L + P++ D ++ ++ ++ +
Sbjct: 60 DFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEK 119
Query: 197 ------IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGW 250
+ R LF I E I+ + + GR+ E LR L++LQ P P W
Sbjct: 120 DITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTP-VATPVNW 178
Query: 251 KPGDKSMKPDPKLS----KEYF 268
GDK P L ++F
Sbjct: 179 NEGDKCCVI-PTLQDDEISKHF 199
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 1e-98
Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 17/204 (8%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
L+G+ AP+F A + ++ D++G + ILF +P DFT VC TE+ +
Sbjct: 4 GLLLGDVAPNFEANTTVGR----IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAP 59
Query: 137 EFEKLNTEILGVSTDSVFSHLAWV---QTDRKSGGLGDLKYPLIADITKSISKSYGVLIP 193
EF K N +++ +S DSV HLAW L +P+I D + ++ G+L P
Sbjct: 60 EFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDP 119
Query: 194 DQG------IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCP 247
+ + R +F+ + ++ S + GR+ DE LR + +LQ E P
Sbjct: 120 AEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKR-VATP 178
Query: 248 AGWKPGDKSMKP---DPKLSKEYF 268
WK GD M + +K+ F
Sbjct: 179 VDWKDGDSVMVLPTIPEEEAKKLF 202
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249 | Back alignment and structure |
|---|
Score = 280 bits (719), Expect = 1e-95
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 9/197 (4%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
PL+G P+ I + K+ +LF +P DFT VC TE +F+ RY +
Sbjct: 5 PLIGERFPEMEVTTDHGV--IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYED 62
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
F++L +++G+S DSVFSH+ W + + G+ + +P+IAD ++++ G+L +
Sbjct: 63 FQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESAT 121
Query: 198 -ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKP---- 252
+RG+FI+D GVI+ + +GR VDE LR ++AL+ PA W
Sbjct: 122 HTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLK-RAVPADWPNNEII 180
Query: 253 GDKSMKPDPKLSKEYFA 269
G+ + P P + A
Sbjct: 181 GEGLIVPPPTTEDQARA 197
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 6e-79
Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
VG TAPDF + DQ V L Y G K V+L F+PL FT +C E+ D EFE
Sbjct: 11 VGATAPDFT---LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE 67
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI--TKSISKSYGVLIPDQGI 197
++ L +S +H W +PL++D ++S++YGV GI
Sbjct: 68 NDDSAALAISVGPPPTHKIWATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAGI 120
Query: 198 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236
A RG F++D+ G+I+ + + R L AL
Sbjct: 121 ANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159
|
| >2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 2e-48
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+G APDF D E VKLS GK V+L FYP FT VC E+ F D +F
Sbjct: 6 IGELAPDFELP---DTELKKVKLSALKGKV-VVLAFYPAAFTQVCTKEMCTFRDSMAKFN 61
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL-----IPD 194
++N +LG+S D FS+ A+ + + L + +++D + + K Y V +P
Sbjct: 62 QVNAVVLGISVDPPFSNKAFKEHN-------KLNFTILSDYNREVVKKYNVAWEFPALPG 114
Query: 195 QGIALRGLFIIDKEGVIQHSTINNLAIGRS-VDETLRTLQAL 235
+A R +F+IDKEG +++ +++ DE + +++L
Sbjct: 115 YVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156
|
| >2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-46
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
+G APDF +Q+F V L + + + + +L F+P F+ VC E+ F D+ +
Sbjct: 7 LGEKAPDFTLP---NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQL 63
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG-- 196
EK N E+L +S DS + + + L + L++D + + K Y V D
Sbjct: 64 EKANAEVLAISVDSPWCLKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGL 116
Query: 197 --IALRGLFIIDKEGVIQHSTINNLAIGRS-VDETLRTLQALQ 236
+A R +FI+ +G + + + + + DE +R +
Sbjct: 117 KMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 159
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 5e-39
Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
VG+ AP F + LSDYIGK ++L+FYP D T E +AF D + +
Sbjct: 4 VGDKAPLFEGI---ADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLK 60
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
+ ++GVS+D + SH + + K L + L++D K I + YG
Sbjct: 61 DYDVVVIGVSSDDINSHKRFKE---KY----KLPFILVSDPDKKIRELYGAK-GFILP-A 111
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPD 243
R F+IDK+G+I+H + + V+E L+ L+ ++ + + +
Sbjct: 112 RITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEEEISLE 155
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 1e-38
Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 23/195 (11%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
P G+ P F + D + + L + +I+ +D + R
Sbjct: 21 FPRKGDYLPSFM---LVDDQKHDAALESFSHTPKLIVTLLSVD-EDEHAGLLLLRETRRF 76
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD-- 194
+ +++ ++ DS S GL ++ L + K YGVLI +
Sbjct: 77 LDSWPHLKLIVITVDSPSSLARARHEH----GLPNI-ALLSTLRGRDFHKRYGVLITEYP 131
Query: 195 -QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT---LQALQYVQENPDEVCPAGW 250
G + + D V+ +S + T + +QE + A
Sbjct: 132 LSGYTSPAIILADAANVVHYSER--------LANTRDFFDFDAIEKLLQEGEQQAMAAER 183
Query: 251 KPGDKSMKPDPKLSK 265
+ + + D + K
Sbjct: 184 EAAEARQEQDAEREK 198
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 8e-36
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
VG+ A DF+ + + L+D+ GKK +L P T +C T+ F++
Sbjct: 15 QLQVGDKALDFS---LTTTDLSKKSLADFDGKK-KVLSVVPSIDTGICSTQTRRFNEELA 70
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD-ITKSISKSYGVLIPDQ 195
+ NT +L VS D F+ W + G +++D S + Y +LI +
Sbjct: 71 GLD--NTVVLTVSMDLPFAQKRWCGAE------GLDNAIMLSDYFDHSFGRDYALLINEW 122
Query: 196 GIALRGLFIIDKEGVIQHSTI-NNLAIGRSVDETLRTLQAL 235
+ R +F++D + I++ +N+ + + + +AL
Sbjct: 123 HLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-34
Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 16/163 (9%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
VG+ AP+ V ++ + ++ P T VC TE F++
Sbjct: 20 ELKVGDRAPEAV---VVTKDLQEKIVGGAKDVV-QVIITVPSLDTPVCETETKKFNEIMA 75
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD-- 194
E ++ VS D F+ + ++ + +D + YGVLI +
Sbjct: 76 GME--GVDVTVVSMDLPFAQKRFCESF------NIQNVTVASDFRYRDMEKYGVLIGEGA 127
Query: 195 -QGIALRGLFIIDKEGVIQHSTI-NNLAIGRSVDETLRTLQAL 235
+GI R +FIIDKEG + + + + + DE + ++ L
Sbjct: 128 LKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL 170
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-34
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 14/139 (10%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
G+ APDF V D + V L+DY GKK ++ P T VC + F+
Sbjct: 19 QINEGDFAPDFT---VLDNDLNQVTLADYAGKK-KLISVVPSIDTGVCDQQTRKFNS--- 71
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD-ITKSISKSYGVLIPDQ 195
+ K +L +S D F+ W G ++D S ++YGV++ +
Sbjct: 72 DASKEEGIVLTISADLPFAQKRW------CASAGLDNVITLSDHRDLSFGENYGVVMEEL 125
Query: 196 GIALRGLFIIDKEGVIQHS 214
+ R +F++D + + +
Sbjct: 126 RLLARAVFVLDADNKVVYK 144
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-33
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 17/171 (9%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
P VG+ AP F + + + + GK V+L +P T VC T + F +
Sbjct: 17 LPAVGSPAPAFT---LTGGDLGVISSDQFRGKS-VLLNIFPSVDTPVCATSVRTFDE--- 69
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD-- 194
+L VS D F+ + + G + S + YGV I D
Sbjct: 70 RAAASGATVLCVSKDLPFAQKRFCGAE------GTENVMPASAFRDSFGEDYGVTIADGP 123
Query: 195 -QGIALRGLFIIDKEGVIQHSTI-NNLAIGRSVDETLRTLQALQYVQENPD 243
G+ R + +I +G + ++ + +A + + L L A +
Sbjct: 124 MAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSGSHHHHH 174
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 9e-32
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 20/172 (11%)
Query: 72 ASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAF 131
+ + I + ++ + LSDY + ++L+FYP D T TE F
Sbjct: 19 SHMNIGDTLNHSLLNHPLM---LSGSTCKTLSDYTNQW-LVLYFYPKDNTPGSSTEGLEF 74
Query: 132 SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191
+ +FE++N +LGVS DSV SH ++ K +PL++D + K++ V+
Sbjct: 75 NLLLPQFEQINATVLGVSRDSVKSHDSFCA---KQ----GFTFPLVSDSDAILCKAFDVI 127
Query: 192 IPDQ-------GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236
GI R F+I I + + +E L L+A
Sbjct: 128 KEKTMYGRQVIGI-ERSTFLIGPTHRIVE-AWRQVKVPGHAEEVLNKLKAHA 177
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-31
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
P +G+ A DF + ++ +V LS + GK+ +L +P T VC + F+
Sbjct: 51 LPQIGDKAKDFT---LVAKDLSDVALSSFAGKR-KVLNIFPSIDTGVCAASVRKFNQLAG 106
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD--ITKSISKSYGVLI-- 192
E E NT +L +S+D F+ + + L + ++YGV I
Sbjct: 107 ELE--NTVVLCISSDLPFAQSRFCGAE-------GLSNVITLSTLRGADFKQAYGVAITE 157
Query: 193 -PDQGIALRGLFIIDKEGVIQHS 214
P G+ R + ++D + + +S
Sbjct: 158 GPLAGLTARAVVVLDGQDNVIYS 180
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-31
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 20/164 (12%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+ D L + G ++++FYP D T TE F+ EF+
Sbjct: 11 LPAATFDLPLS---LSGGTQTTLRAHAGHW-LVIYFYPKDSTPGATTEGLDFNALLPEFD 66
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ---- 195
K +ILGVS DSV SH + K G +PL++D +++ +++ V+
Sbjct: 67 KAGAKILGVSRDSVKSHDNFCA---KQG----FAFPLVSDGDEALCRAFDVIKEKNMYGK 119
Query: 196 ---GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236
GI R F++ EG + + + + D L L+A
Sbjct: 120 QVLGI-ERSTFLLSPEGQVVQA-WRKVKVAGHADAVLAALKAHA 161
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 5e-30
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 11/141 (7%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
VG+ APDF V L+D GK I+ P T VC + F++
Sbjct: 17 EVKVGDQAPDFT---VLTNSLEEKSLADMKGKV-TIISVIPSIDTGVCDAQTRRFNEEAA 72
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
+ + + +S D F+ W + G+ ++ L S +++GV I +
Sbjct: 73 KLG--DVNVYTISADLPFAQARWCGAN----GIDKVE-TLSDHRDMSFGEAFGVYIKELR 125
Query: 197 IALRGLFIIDKEGVIQHSTIN 217
+ R +F++D+ G + ++
Sbjct: 126 LLARSVFVLDENGKVVYAEYV 146
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-29
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
P VG +F + + +V L+D+ K+ +L +P T VC T + F+ +
Sbjct: 16 FPQVGEIVENFI---LVGNDLADVALNDFASKR-KVLNIFPSIDTGVCATSVRKFNQQAA 71
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI-TKSISKSYGVLI--- 192
+ NT +L +S D F+ + + G ++ ++ GV I
Sbjct: 72 KLS--NTIVLCISADLPFAQARFCGAE------GIENAKTVSTFRNHALHSQLGVDIQTG 123
Query: 193 PDQGIALRGLFIIDKEGVIQHS 214
P G+ R + ++D++ + HS
Sbjct: 124 PLAGLTSRAVIVLDEQNNVLHS 145
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Length = 159 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-27
Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 36/171 (21%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
+G+ PD + +++ ++ L + V+ F YP T + + F D Y E
Sbjct: 9 IGDPIPDLSLL---NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQEL 65
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV-------- 190
++ + G+S DSV S + +L Y L++D + G
Sbjct: 66 KE-YAAVFGLSADSVTSQKKFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLSGS 117
Query: 191 -----LIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236
+ D + + + I + V E L + +
Sbjct: 118 IRSHFIFVDGKLKFKRVKISPEVSVNDA-----------KKEVLEVAEKFK 157
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-13
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 30/166 (18%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY-----PLDFTFVCPTEITAF 131
P L+G AP+ L D K Y ILFF+ C E
Sbjct: 4 PLLLGKKAPNLYMTDTTGTY---RYLYDVQAK-YTILFFWDSQCGH------CQQETPKL 53
Query: 132 SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK--SISKSYG 189
D + + ++ + + W++ +S +G + + D +Y
Sbjct: 54 YDWWLKNRAKGIQVYAANIER--KDEEWLKF-IRSKKIGG--WLNVRDSKNHTDFKITYD 108
Query: 190 VL-IPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234
+ P L+++DK VI I + + + ++L+
Sbjct: 109 IYATPV-------LYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKT 147
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 5e-13
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFF-----YPLDFTFVCPTEITAFSDR 134
G+ AP+F E + ++LSD G K V L F P C E +++
Sbjct: 2 EGSDAPNFVLEDTNGKR---IELSDLKG-KGVFLNFWGTWCEP------CKKEFPYMANQ 51
Query: 135 YTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL-IP 193
Y F+ EI+ V+ S +A + G + +P++ D + + +Y V +P
Sbjct: 52 YKHFKSQGVEIVAVNVGE--SKIAVHNFMKSYG----VNFPVVLDTDRQVLDAYDVSPLP 105
Query: 194 DQGIALRGLFIIDKEGVIQH 213
F+I+ EG +
Sbjct: 106 TT-------FLINPEGKVVK 118
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-12
Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 26/157 (16%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFF-----YPLDFTFVCPTEITAFSDR 134
G+ AP D + +V L+D+ GK YV++ F C E
Sbjct: 5 TGSVAPAITGI---DLKGNSVSLNDFKGK-YVLVDFWFAGCSW------CRKETPYLLKT 54
Query: 135 YTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL-IP 193
Y F+ I GVSTD W + + + L D K + +SY ++ P
Sbjct: 55 YNAFKDKGFTIYGVSTDR--REEDWKKA-IEEDKSYWNQVLLQKDDVKDVLESYCIVGFP 111
Query: 194 DQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230
+ ++D EG I + + +V++ +
Sbjct: 112 -------HIILVDPEGKIVAKELRGDDLYNTVEKFVN 141
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-12
Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 30/140 (21%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF--TFVCP---TEITAFSDR 134
G+ APDFA VKLSD G V L DF ++ C +
Sbjct: 5 KGDKAPDFALPGK-TGV---VKLSDKTGS-VVYL-----DFWASW-CGPCRQSFPWMNQM 53
Query: 135 YTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL-IP 193
+++ +++ V+ D+ ++ + ++ + D + YGV +P
Sbjct: 54 QAKYKAKGFQVVAVNLDA--KTGDAMKFLAQVP----AEFTVAFDPKGQTPRLYGVKGMP 107
Query: 194 DQGIALRGLFIIDKEGVIQH 213
F+ID+ G +
Sbjct: 108 T-------SFLIDRNGKVLL 120
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-12
Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 38/170 (22%)
Query: 73 SVEIP--PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF----VCPT 126
S+EIP + + D + D + L+D GK V++ DFT +
Sbjct: 2 SLEIPEDKIKEASIIDIQLK---DLKGNTRSLTDLKGK-VVLI-----DFTVYNNAMSAA 52
Query: 127 EITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK---S 183
A + Y ++ EI +S D W + L + + D S
Sbjct: 53 HNLALRELYNKYASQGFEIYQISLDG--DEHFWKTSADN------LPWVCVRDANGAYSS 104
Query: 184 ISKSYGV-LIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232
Y V +P +F++++ + N + +DE ++ L
Sbjct: 105 YISLYNVTNLPS-------VFLVNRNNELSARGEN----IKDLDEAIKKL 143
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-12
Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 32/164 (19%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF--TFVCPT---EITAFS 132
L TAP F+ + + V +D GK + ++F CP E+
Sbjct: 2 SLDSKTAPAFSLPDLHGKT---VSNADLQGKVTL------INFWFPS-CPGCVSEMPKII 51
Query: 133 DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV-L 191
+++ N ++L V+ + Q + G L + ++ D K++ +++G +
Sbjct: 52 KTANDYKNKNFQVLAVAQPI-DPIESVRQYVKDYG----LPFTVMYDADKAVGQAFGTQV 106
Query: 192 IPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235
P +I K+G I + + + + +
Sbjct: 107 YPTS-------VLIGKKGEILKTYVG----EPDFGKLYQEIDTA 139
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 32/161 (19%)
Query: 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY-----PLDFTFVCPTEITAFSDRY 135
+A F+ + + V L+D GK Y+ + + P C E+ A +
Sbjct: 7 NPSAASFSYPDINGKT---VSLADLKGK-YIYIDVWATWCGP------CRGELPALKELE 56
Query: 136 TEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL-IPD 194
++ + + +S D + AW K G L ++ +Y + IP
Sbjct: 57 EKYAGKDIHFVSLSCDK--NKKAWENMVTKDQLKG---IQLHMGTDRTFMDAYLINGIPR 111
Query: 195 QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235
++D++G I I+ S +T L
Sbjct: 112 -------FILLDRDGKI----ISANMTRPSDPKTAEKFNEL 141
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-11
Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 31/146 (21%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF----VCPTEITAFSDRY 135
+G APDF ++ V LS GK + L FT VC E+
Sbjct: 9 IGEMAPDFTITLTDGKQ---VTLSSLRGKVVM------LQFTASWCGVCRKEMPFIEKDI 59
Query: 136 TEF--EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV--- 190
+ + ++G+ D + + +G + YPL D I Y +
Sbjct: 60 WLKHKDNADFALIGIDRDE--PLEKVLAFAKSTG----VTYPLGLDPGADIFAKYALRDA 113
Query: 191 LIPDQGIALRGLFIIDKEGVIQHSTI 216
I +ID+EG I T
Sbjct: 114 GITR-------NVLIDREGKIVKLTR 132
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-10
Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 38/174 (21%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF--TFVCP---TEITAF 131
G AP+F + + L+ Y GK V++ +F ++ CP E+ +
Sbjct: 14 LVRTGALAPNFKLPTLSGEN---KSLAQYRGK-IVLV-----NFWASW-CPYCRDEMPSM 63
Query: 132 SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191
F K + +L V+ + + + R++ + + ++D T + + YG
Sbjct: 64 DRLVKSFPKGDLVVLAVNVEK-----RFPEKYRRAP----VSFNFLSDATGQVQQRYGA- 113
Query: 192 IPDQGIALRGL---FIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENP 242
L FI+D++G+I+ I + + L++L+ +
Sbjct: 114 --------NRLPDTFIVDRKGIIRQRVTG--GIEWDAPKVVSYLKSLEGHHHHH 157
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-10
Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 34/144 (23%)
Query: 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY-----PLDFTFVCPTEITAFSD 133
+G A +F + L + +Y +LF C I
Sbjct: 6 RLGTKALNFTYT---LDSGVKGTLYQFPA-EYTLLFINNPGCHA------CAEMIEGLKA 55
Query: 134 RYTEFEKL---NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI--SKSY 188
++L + D W + ++ D I Y
Sbjct: 56 SPVINGFTAAKKLKVLSIYPDE--ELDEWKKHRNDFA----KEWTNGYDKELVIKNKNLY 109
Query: 189 GVL-IPDQGIALRGLFIIDKEGVI 211
+ IP L+++DK +
Sbjct: 110 DLRAIPT-------LYLLDKNKTV 126
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-10
Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 30/141 (21%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCP------TEITAFSD 133
G A DF N ++S +Y +LFFY D C
Sbjct: 3 AGMKAADFTYV---TVHGDNSRMSRLKA-QYTMLFFYDPD----CSNCRKFEKLFAEIPA 54
Query: 134 RYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS--ISKSYGVL 191
E +L + D + W + + + + Y +
Sbjct: 55 FVEMVENGTLRVLAIYPDE--NREEWATKAVYMP----QGWIVGWNKAGDIRTRQLYDIR 108
Query: 192 -IPDQGIALRGLFIIDKEGVI 211
P ++++D +
Sbjct: 109 ATP-------TIYLLDGRKRV 122
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-09
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF--TFVCPT---EITAFSD 133
L N APDF + + VKLSD G+ + ++F T+ CP EI +
Sbjct: 3 LEENPAPDFTLNTLNGEV---VKLSDLKGQVVI------VNFWATW-CPPCREEIPSMMR 52
Query: 134 RYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIP 193
+L VS D +A + RK+G P++ D K + K YG
Sbjct: 53 LNAAMAGKPFRMLCVSIDEG-GKVAVEEFFRKTG----FTLPVLLDADKRVGKLYGT--- 104
Query: 194 DQGIALRGL---FIIDKEGVIQH 213
G+ F+ID+ GVI
Sbjct: 105 ------TGVPETFVIDRHGVILK 121
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-09
Identities = 17/164 (10%), Positives = 44/164 (26%), Gaps = 37/164 (22%)
Query: 71 KASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF--TFVCP--- 125
+ V F+ + + + L++ G VIL F + CP
Sbjct: 4 PRAAGHSEEVLEREASFSLTTIDGEV---ISLNNVGGD-VVIL-----WFMAAW-CPSCV 53
Query: 126 TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGD------------LK 173
++ ++ ++ + + + A
Sbjct: 54 YMADLLDRLTEKYREI--SVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDP 111
Query: 174 YPLIADITKSISKSYGVL-IPDQGIALRGLFIIDKEGVIQHSTI 216
++ S+ + + V I + I+DK + ++
Sbjct: 112 SWIMVMDDGSLVEKFNVRSIDY-------IVIMDKSSNVLYAGT 148
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-09
Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 31/162 (19%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFT----FVCPTEITAFSDR 134
VG +AP F+ +++ + S + +Y++L +F P
Sbjct: 7 VGKSAPYFSLP---NEKGEKLSRSAERFRNRYLLL-----NFWASWCDPQPEANAELKRL 58
Query: 135 YTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT---KSISKSYGV 190
E++K N +LG+S D AW +K L + + D T +K Y +
Sbjct: 59 NKEYKKNKNFAMLGISLDI--DREAWETAIKKDT----LSWDQVCDFTGLSSETAKQYAI 112
Query: 191 L-IPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231
L +P ++ G I I A+ + E L+T
Sbjct: 113 LTLPT-------NILLSPTGKILARDIQGEALTGKLKELLKT 147
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 4e-09
Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 28/139 (20%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY-----PLDFTFVCPTEITAFSDR 134
G+ AP D + +G+ Y +L F+ ++
Sbjct: 9 PGDLAPRIEFLGN-DA---KASFHNQLGR-YTLLNFWAAYDAE------SRARNVQLANE 57
Query: 135 YTEFEKLNTEILGVSTD-SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL-I 192
+F + +S D V+ D+ + + K Y +
Sbjct: 58 VNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQ---FHEGLGKESELYKKYDLRKG 114
Query: 193 PDQGIALRGLFIIDKEGVI 211
F+I+ EGVI
Sbjct: 115 F-------KNFLINDEGVI 126
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 4e-09
Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 24/189 (12%)
Query: 36 TIPRSFSGLRNPLKS----QVPRPVSLSRGSRSRKSFVVKASVEIPPL-VGNTAPDFAAE 90
+ G N ++ ++L ++ + + S L TAPD
Sbjct: 4 SHHHHHHGSENLYFQSGAMEIREQLNLGGIVNAQNAQLSNCSDGAAQLESCGTAPDLKGI 63
Query: 91 AVF--DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPT---EITAFSDRYTEFEKLNTEI 145
+ + L GK V++ F + + C I Y ++ +
Sbjct: 64 TGWLNTPGNKPIDLKSLRGK-VVLIDF----WAYSCINCQRAIPHVVGWYQAYKDSGLAV 118
Query: 146 LGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV-LIPDQGIALRGLFI 204
+GV T ++ K + YP+ D + +Y P ++
Sbjct: 119 IGVHTPE-YAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRYWP-------AEYL 170
Query: 205 IDKEGVIQH 213
ID G ++H
Sbjct: 171 IDATGTVRH 179
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 4e-09
Identities = 16/145 (11%), Positives = 44/145 (30%), Gaps = 27/145 (18%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF--TFVCPT---EITAF 131
+ ++ + K + + F ++ CP E+
Sbjct: 11 AGTATVPHTMSTMKTADNRP---ASVYLKKDKPTL------IKFWASW-CPLCLSELGQA 60
Query: 132 SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191
+ + + ++ V++ + + GL K P++ D +I+++ +
Sbjct: 61 EKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNI- 119
Query: 192 IPDQGIALRGL---FIIDKEGVIQH 213
+I K+G +Q
Sbjct: 120 --------SVYPSWALIGKDGDVQR 136
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-09
Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 30/142 (21%)
Query: 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF--TFVCP---TEITAFSDRYTEF 138
DF V + +LSDY GK V L F ++ C + + E
Sbjct: 2 VADFELMGVDGKT---YRLSDYKGK-KVYL-----KFWASW-CSICLASLPDTDEIAKEA 51
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRK-SGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
+ VS + GL P++ D + + ++YGV
Sbjct: 52 GDDYVVLTVVSPGH--KGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGV------- 102
Query: 198 ALRGL---FIIDKEGVIQHSTI 216
R IDKEG + +
Sbjct: 103 --RSYPTQAFIDKEGKLVKTHP 122
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-09
Identities = 22/163 (13%), Positives = 56/163 (34%), Gaps = 35/163 (21%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDF--TFVCP-----TEITAF 131
+G AP F+ + + + S K K +++ +F ++ +
Sbjct: 7 IGKYAPFFSLP---NAKGEKITRSSDAFKQKSLLI-----NFWASW-NDSISQKQSNSEL 57
Query: 132 SDRYTEF-EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK---SISKS 187
+ Y ++ + +LG+S D W ++ L + + D ++K
Sbjct: 58 REIYKKYKKNKYIGMLGISLDV--DKQQWKDAIKRDT----LDWEQVCDFGGLNSEVAKQ 111
Query: 188 YGVL-IPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETL 229
Y + IP ++ +G I + + + ++ +
Sbjct: 112 YSIYKIP-------ANILLSSDGKILAKNLRGEELKKKIENIV 147
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-08
Identities = 26/162 (16%), Positives = 42/162 (25%), Gaps = 35/162 (21%)
Query: 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY----PLDFTFVCPTEITAFSDRYT 136
+ F A + + GK V+ F+ C E + S
Sbjct: 1 ADERLQFTATTLSGAP---FDGASLQGKPAVLWFWTPWCPF------CNAEAPSLSQVAA 51
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
+ +G++T + A K L + + D I Y V
Sbjct: 52 ANPAV--TFVGIATRA--DVGAMQSFVSKYN----LNFTNLNDADGVIWARYNV------ 97
Query: 197 IALRGL---FIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235
+G +NN S DE + AL
Sbjct: 98 ---PWQPAFVFYRADGTSTF--VNNPTAAMSQDELSGRVAAL 134
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-08
Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 31/144 (21%)
Query: 80 VGNTAPDFAAEAVFDQEFIN---VKLSDYIGKKYVILFFYPLDFTFVCPT------EITA 130
+ P+ E ++N + K +I F+ + C ++
Sbjct: 3 LRQPMPELTGEK----AWLNGEVTREQLIGEKPTLIHFW-----SISCHLCKEAMPQVNE 53
Query: 131 FSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190
F D+Y + ++ V +++ D+ P+ D +++ ++
Sbjct: 54 FRDKYQD----QLNVVAVHMPR-SEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFEN 108
Query: 191 -LIPDQGIALRGLFIIDKEGVIQH 213
+P ++ DK G ++H
Sbjct: 109 EYVP-------AYYVFDKTGQLRH 125
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 26/149 (17%)
Query: 72 ASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY----PLDFTFVCPTE 127
+ AP F+ V + + GK Y++ FF P C +E
Sbjct: 2 SLSAQADARPTPAPSFSGVTVDGKP---FSSASLKGKAYIVNFFATWCPP------CRSE 52
Query: 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187
I + +G++ + + G + YP++ + I
Sbjct: 53 IPDMVQVQKTWASRGFTFVGIAVNE--QLPNVKNYMKTQG----IIYPVMMATPELIRAF 106
Query: 188 YGVLIPDQGIALRGL---FIIDKEGVIQH 213
G + + G+ F+ID G +
Sbjct: 107 NGYIDGG----ITGIPTSFVIDASGNVSG 131
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 21/152 (13%), Positives = 57/152 (37%), Gaps = 29/152 (19%)
Query: 72 ASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFF----YPLDFTFVCPTE 127
+ + F + + ++ + + + G+K ++ F+ P C E
Sbjct: 3 GAAQAEEKQPAVPAVFLMKTIEGED---ISIPNK-GQKTILHFWTSWCPP------CKKE 52
Query: 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187
+ F Y + +++ V+ + + V+ K+ L +P++ D + K
Sbjct: 53 LPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKL---TFPIVLDSKGELMKE 109
Query: 188 YGVLIPDQGIALRGL---FIIDKEGVIQHSTI 216
Y + + F+++++G I+ + I
Sbjct: 110 YHI---------ITIPTSFLLNEKGEIEKTKI 132
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-08
Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 31/156 (19%)
Query: 71 KASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY----PLDFTFVCPT 126
K + PD +++ +E + LSD+ + ++ + P C +
Sbjct: 24 KMEIFYDEADRQQLPDIGGDSL-MEEGTQINLSDFENQVVILNAWGQWCAP------CRS 76
Query: 127 EITAFSDRYTEFEK------LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180
E + E + +LG++ S +G L YP I D
Sbjct: 77 ESDDLQIIHEELQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDNG----LDYPSIYDP 131
Query: 181 TKSISKSYGVLIPDQGIALRGL---FIIDKEGVIQH 213
+ S G G+ + ++DK+
Sbjct: 132 PFMTAASLG------GVPASVIPTTIVLDKQHRPAA 161
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 31/141 (21%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY-----PLDFTFVCPTEITAFSDR 134
+ P E V L +G K V L+F P C ++
Sbjct: 4 LAKYLPGATNLLSKSGE---VSLGSLVG-KTVFLYFSASWCPP------CRGFTPVLAEF 53
Query: 135 YTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS-ISKSYGVL- 191
Y + N E++ +S D + + K L P T S + K++GV
Sbjct: 54 YEKHHVAKNFEVVLISWDE--NESDFHDYYGKMPWLA---LPFDQRSTVSELGKTFGVES 108
Query: 192 IPDQGIALRGLFIIDKE-GVI 211
IP L I+ + G I
Sbjct: 109 IPT-------LITINADTGAI 122
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 38/151 (25%)
Query: 74 VEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFF----YPLDFTFVCPTEIT 129
+ + G PDF Q V + K VI+F+ C E
Sbjct: 1 MSLAVKPGEPLPDFLLLDPKGQP---VTPATV-SKPAVIVFWASWCTV------CKAEFP 50
Query: 130 AFSDRYTEFEKLNTEILGVST-DSVFSHLAWVQTDRKSGGLGDLKYP---LIADITKSIS 185
E + ++ D+ L +++T P D ++
Sbjct: 51 GLHRVAEET-GVPFYVISREPRDTREVVLEYMKTY-------PRFIPLLASDRDRPHEVA 102
Query: 186 KSYGVLIPDQGIALRGL---FIIDKEGVIQH 213
+ V G F++D+EG +
Sbjct: 103 ARFKV---------LGQPWTFVVDREGKVVA 124
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 8e-08
Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 27/139 (19%)
Query: 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY----PLDFTFVCPTEITAFSDRYTE 137
+ + D A + L ++ + P C E+ A S Y
Sbjct: 2 SLSADELAGWKDNTP---QSLQSLKAPVRIVNLWATWCGP------CRKEMPAMSKWYKA 52
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
+K + +++G++ D+ + +++ + YP+ + G
Sbjct: 53 QKKGSVDMVGIALDTSDNIGNFLKQT-------PVSYPIWRYTGANSRNFMKTY----GN 101
Query: 198 ALRGL---FIIDKEGVIQH 213
+ L + + +
Sbjct: 102 TVGVLPFTVVEAPKCGYRQ 120
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-08
Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 36/139 (25%)
Query: 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF--TFVCPT---EITAFSDRYTEF 138
F+A+ + + +GK V L F + CPT E
Sbjct: 5 QLQFSAKTLDGHD---FHGESLLGKPAV------LWFWAPW-CPTCQGEAPVVGQVAASH 54
Query: 139 EKLNTEILGVST-DSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
++ +GV+ D V + +V + +AD S+ ++GV
Sbjct: 55 PEV--TFVGVAGLDQVPAMQEFVNKY------PVKTFTQLADTDGSVWANFGV------- 99
Query: 198 ALRGL---FIIDKEGVIQH 213
+D G +
Sbjct: 100 --TQQPAYAFVDPHGNVDV 116
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-07
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 23/146 (15%)
Query: 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPT----EITAFSDRYT 136
AP+ + F+ ++ L+D GK +++ F +CP I
Sbjct: 3 AMKAPELQIQQWFNSA-TDLTLADLRGK-VIVIEA----FQMLCPGCVMHGIPLAQKVRA 56
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS-----ISKSYGVL 191
F + +LG+ T + + +K+P+ D +Y +
Sbjct: 57 AFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMR 116
Query: 192 -IPDQGIALRGLFIIDKEGVIQHSTI 216
P L +IDK G ++
Sbjct: 117 GTP-------SLLLIDKAGDLRAHHF 135
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-07
Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 30/138 (21%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY-----PLDFTFVCPTEITAFSDR 134
+ P D E V++ G K V +F P +
Sbjct: 4 LDKYLPGIEKLRRGDGE---VEVKSLAG-KLVFFYFSASWCPP------ARGFTPQLIEF 53
Query: 135 YTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVL- 191
Y +F + N E++ + D + K L P ++ + +SK + V
Sbjct: 54 YDKFHESKNFEVVFCTWDE--EEDGFAGYFAKMPWLA---VPFAQSEAVQKLSKHFNVES 108
Query: 192 IPDQGIALRGLFIIDKEG 209
IP L +D +
Sbjct: 109 IPT-------LIGVDADS 119
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-07
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 99 NVKLSDYI-GKKYVILFFY-----PLDFTFVCPTEITAFSDRYTEFEKLNT--EILGVST 150
V ++ + K + +F P C +D Y+E + EI+ VS+
Sbjct: 16 EVNANEALKDKDIIGFYFSAHWCPP------CRGFTPILADMYSELVDDSAPFEIIFVSS 69
Query: 151 DSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL-IPDQGIALRGLFIIDKEG 209
D S Q +S G L P + +++ YG+ IP L I+ K+G
Sbjct: 70 DR--SEDDMFQYMMESHGDW-LAIPYRSGPASNVTAKYGITGIPA-------LVIVKKDG 119
Query: 210 VI 211
+
Sbjct: 120 TL 121
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-06
Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 25/152 (16%)
Query: 76 IPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPT----EITAF 131
+ L + + + E + D GK V++ F +CP +
Sbjct: 1 MSSLDNAPLLELDVQEWVNHE--GLSNEDLRGK-VVVVEV----FQMLCPGCVNHGVPQA 53
Query: 132 SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD------ITKSIS 185
+ ++ +++G+ + + + + +K+P+ D S
Sbjct: 54 QKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTM 113
Query: 186 KSYGV-LIPDQGIALRGLFIIDKEGVIQHSTI 216
K Y + P + + D++G I+
Sbjct: 114 KKYRLEGTP-------SIILADRKGRIRQVQF 138
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 27/140 (19%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY-----PLDFTFVCPTEITAFSDR 134
PD A D + KLSD+ GK +++ + P C E+ A +
Sbjct: 36 APLKLPDLA---FEDADGKPKKLSDFRGK-TLLVNLWATWCVP------CRKEMPALDEL 85
Query: 135 YTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD 194
+ N E++ ++ D+ +T K L L D + + +
Sbjct: 86 QGKLSGPNFEVVAINIDT--RDPEKPKTFLKEANLTRL--GYFNDQKAKVFQDLKAIGR- 140
Query: 195 QGIALRGL---FIIDKEGVI 211
G+ ++D +G
Sbjct: 141 ----ALGMPTSVLVDPQGCE 156
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-05
Identities = 46/327 (14%), Positives = 82/327 (25%), Gaps = 122/327 (37%)
Query: 13 TAALISSNPKAFSSSSISPSQNLTIPRSFSGLRNPLKSQVPRP----------------- 55
T I + ++ + + N++ + + LR L P
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 56 -VSLSRGSRSRKSFVV---------KASVEIPPLV---------GNTAPDFAAEAVFDQE 96
V LS + + F + + L + D ++
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 97 FINVKLSDYIGKKYVILFFYP-----LD----------FTFVCPTEITAFSDRYTEFEKL 141
I +L + K Y L F C +T R+ +
Sbjct: 229 SIQAELRRLLKSKP-----YENCLLVLLNVQNAKAWNAFNLSCKILLTT---RFKQ---- 276
Query: 142 NTEILGVSTDSVFS--HLAWVQTDRKSGGL---------GDLK------YPL----IA-- 178
T+ L +T + S H + T + L DL P IA
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 179 -----------------DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAI 221
+T I S VL P + R +F + L++
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE---YRKMF-------------DRLSV 380
Query: 222 GR-SVDETLRTLQAL--QYVQENPDEV 245
S L + ++ + V
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVV 407
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 30/135 (22%)
Query: 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFY-----PLDFTFVCPTEITAFSDRYTEF 138
++ + ++ L G K V +F P D Y
Sbjct: 6 FFPYSTNVL-KGAAADIALPSLAG-KTVFFYFSASWCPP------SRAFTPQLIDFYKAH 57
Query: 139 -EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD--ITKSISKSYGVL-IPD 194
EK N E++ +S D S + K D + ++ + V IP
Sbjct: 58 AEKKNFEVMLISWDE--SAEDFKDYYAKMP----WLALPFEDRKGMEFLTTGFDVKSIPT 111
Query: 195 QGIALRGLFIIDKEG 209
L ++ +
Sbjct: 112 -------LVGVEADS 119
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 27/118 (22%)
Query: 100 VKLSDYIGKKYVILFFY-----PLDFTFVCPTEITAFSDRYTEF-EKLNTEILGVSTDSV 153
+ G K V +F P C + Y + + N EI+ S D
Sbjct: 41 ADMDSLSG-KTVFFYFSASWCPP------CRGFTPQLVEFYEKHHDSKNFEIILASWDE- 92
Query: 154 FSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVL-IPDQGIALRGLFIIDKEG 209
+ K L P +I ++++K Y V IP L ++ +
Sbjct: 93 -EEDDFNAYYAKMPWLS---IPFANRNIVEALTKKYSVESIPT-------LIGLNADT 139
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 73 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF---VCPTEIT 129
S +I + F +Q+ NV L G+ ++ F FT +CP
Sbjct: 2 SQQIKDPLNYEVEPFT---FQNQDGKNVSLESLKGEVWLADFI----FTNCETICPPMTA 54
Query: 130 AFSDRYTEFEKLNTEILGVS 149
+D + + N ++ +S
Sbjct: 55 HMTDLQKKLKAENIDVRIIS 74
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 271 | |||
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 100.0 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 100.0 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 100.0 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 100.0 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 100.0 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 100.0 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 100.0 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 100.0 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 100.0 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 100.0 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 100.0 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 100.0 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 100.0 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 100.0 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 100.0 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 100.0 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 100.0 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 100.0 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 100.0 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 100.0 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 100.0 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 100.0 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.97 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.97 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.97 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.97 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.97 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.97 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.96 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.96 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.96 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.96 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.96 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.96 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.96 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.96 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.96 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.96 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.96 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.95 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.95 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.95 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.95 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.95 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.95 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.94 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.94 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.94 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.94 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.94 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.93 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.93 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.93 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.93 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.93 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.93 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.93 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.93 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.93 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.93 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.92 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.92 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.92 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.92 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.92 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.92 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.92 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.92 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.92 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.92 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.92 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.91 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.91 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.91 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.91 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.91 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.91 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.91 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.91 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.91 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.91 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.91 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.9 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.9 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.9 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.9 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.9 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.9 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.9 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.9 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.9 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.89 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.89 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.89 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.82 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.89 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.88 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.88 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.87 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.87 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.86 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.86 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.84 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.73 | |
| 4h86_A | 199 | Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch | 99.77 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.56 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.54 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.54 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.46 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.41 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.4 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.36 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.34 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.33 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.32 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.3 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.29 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.29 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.27 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.26 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.25 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.25 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.24 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.24 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.24 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.23 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.23 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.23 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.22 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.22 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.22 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.22 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.21 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.21 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.21 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.2 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.2 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.2 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.2 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.18 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.18 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.18 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.18 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.18 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.16 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.16 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.16 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.16 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.15 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.15 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.15 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.15 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.14 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.14 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.13 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.13 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.13 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.13 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.13 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.13 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.12 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.11 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.11 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.11 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.1 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.1 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.1 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.68 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.09 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.09 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.07 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.06 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.06 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.05 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.03 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.02 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.02 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.02 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.02 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.01 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 98.97 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 98.97 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 98.94 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 98.94 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 98.94 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 98.93 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.92 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.91 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 98.91 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 98.9 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.43 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 98.89 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 98.88 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 98.87 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 98.87 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 98.86 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.82 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.82 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 98.81 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 98.74 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.74 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 98.73 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 98.72 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 98.68 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 98.66 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.65 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 98.62 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 98.61 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.57 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.57 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.53 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.51 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.5 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 98.5 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.47 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.45 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 98.42 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.42 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 98.4 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.39 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.35 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.33 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.22 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.22 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.15 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.14 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.04 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.03 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 98.01 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 97.9 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 97.88 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 97.84 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 97.82 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.8 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 97.8 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 97.78 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 97.76 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 97.75 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 97.69 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 97.68 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 97.68 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 97.46 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 97.2 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 97.12 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 97.04 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 96.92 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 96.88 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 96.72 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 96.59 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 96.56 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 96.55 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 96.46 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 96.35 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 96.29 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 96.28 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 96.18 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 95.97 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 95.77 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 95.59 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 95.56 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 95.29 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 95.25 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 95.19 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 95.14 | |
| 3l9s_A | 191 | Thiol:disulfide interchange protein; thioredoxin-f | 95.13 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 94.76 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 94.63 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 94.58 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 94.57 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 93.66 | |
| 2axo_A | 270 | Hypothetical protein ATU2684; alpha beta protein., | 93.6 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 93.44 | |
| 3f4s_A | 226 | Alpha-DSBA1, putative uncharacterized protein; thi | 93.32 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 93.27 | |
| 3l9v_A | 189 | Putative thiol-disulfide isomerase or thioredoxin; | 93.2 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 91.73 | |
| 1wik_A | 109 | Thioredoxin-like protein 2; picot homology 2 domai | 90.85 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 90.7 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 90.1 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 89.03 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 87.72 | |
| 3l78_A | 120 | Regulatory protein SPX; transcription, transcripti | 85.94 | |
| 3c7m_A | 195 | Thiol:disulfide interchange protein DSBA-like; red | 85.04 | |
| 1z3e_A | 132 | Regulatory protein SPX; bacterial transcription re | 84.56 | |
| 3ktb_A | 106 | Arsenical resistance operon trans-acting represso; | 84.39 | |
| 2ct6_A | 111 | SH3 domain-binding glutamic acid-rich-like protein | 84.28 | |
| 1aba_A | 87 | Glutaredoxin; electron transport; HET: MES; 1.45A | 83.98 | |
| 3tdg_A | 273 | DSBG, putative uncharacterized protein; thioredoxi | 83.75 | |
| 1t1v_A | 93 | SH3BGRL3, SH3 domain-binding glutamic acid-rich pr | 83.72 | |
| 3kgk_A | 110 | Arsenical resistance operon trans-acting represso; | 83.14 | |
| 2wci_A | 135 | Glutaredoxin-4; redox-active center, iron-sulfur c | 82.16 | |
| 3gx8_A | 121 | Monothiol glutaredoxin-5, mitochondrial; TRX fold, | 81.25 | |
| 3fz4_A | 120 | Putative arsenate reductase; APC61768, structural | 80.61 |
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=319.26 Aligned_cols=195 Identities=51% Similarity=0.858 Sum_probs=185.0
Q ss_pred cCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 74 VEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 74 ~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
..|.+++|+++|||+++.+.|.+|++|+|+||+|| ++||+|||++|||+|..|++.|++.+++|+++|++||+||+|+.
T Consensus 19 ~~M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK-~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~ 97 (216)
T 3sbc_A 19 SHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGK-YVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSE 97 (216)
T ss_dssp ---CCCTTSBCCCCCEEEEETTEEEEECGGGGTTS-EEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCH
T ss_pred CcchhhcCCcCCCCCCcceECCCCcEEehHHhCCC-eEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCch
Confidence 34568899999999999888899999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.+.+|.+.+...+++.+++||+++|.+++++++||+..++.|+..|.+||||++|+|++..+++...+++++|+|+.|+
T Consensus 98 ~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~ 177 (216)
T 3sbc_A 98 YSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVE 177 (216)
T ss_dssp HHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHH
Confidence 99999999988888888899999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 234 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
+||+..++ ++.||++|+||+++|+|+....|+||.+
T Consensus 178 AlQ~~~~~-~~~~Pa~W~~G~~~i~p~~~~~~~~~~~ 213 (216)
T 3sbc_A 178 AFQWTDKN-GTVLPCNWTPGAATIKPTVEDSKEYFEA 213 (216)
T ss_dssp HHHHHHHH-CCBBCTTCCTTSCCBCCSTTTHHHHHHH
T ss_pred HhhhHhhc-CCCcCCCCCCCCceecCCHHHHHHHHHH
Confidence 99999999 8999999999999999999999999975
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=310.01 Aligned_cols=190 Identities=53% Similarity=0.982 Sum_probs=154.8
Q ss_pred CCCCCCCCCeEEeee-cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAV-FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~-~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+++|++||||++.++ .|.+|+.|+|+||+|| ++||+|||.+|||+|..|+..|++++++|++.|++||+||+|+.+.+
T Consensus 26 ~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK-~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh 104 (219)
T 3tue_A 26 AKINSPAPSFEEVALMPNGSFKKISLSSYKGK-WVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAH 104 (219)
T ss_dssp CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTS-EEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHH
T ss_pred cccCCcCCCCcccccccCCCCcEEehHHhCCC-EEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhH
Confidence 679999999998754 3788999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++|.+++...++..+++||+++|.+++++++||+.....|+..+.+||||++|+|++.++++..++++++|+|+.|++||
T Consensus 105 ~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ 184 (219)
T 3tue_A 105 LQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQ 184 (219)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHhh
Confidence 99999887777777899999999999999999999888898899999999999999999999999999999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCchhhHH-Hhh
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPKLSKE-YFA 269 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~ 269 (271)
+.+++ +++||++|+||+++|+|++..+++ ||.
T Consensus 185 ~~~~~-~~~~Pa~W~~G~~~i~p~~~~~~e~y~~ 217 (219)
T 3tue_A 185 FVEKH-GEVCPANWKKGDPGMKPEPNASVEGYFS 217 (219)
T ss_dssp HHHHC-----------------------------
T ss_pred hHHhc-CCCcCCCCCCCCccccCCCccchhhhcc
Confidence 99999 899999999999999999988876 996
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=301.63 Aligned_cols=191 Identities=54% Similarity=1.015 Sum_probs=154.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|+++++.+.+|+.++|++|+|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.+.
T Consensus 62 l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK-~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~ 140 (254)
T 3tjj_A 62 AKISKPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL 140 (254)
T ss_dssp CCTTSBCCCCEEEEEETTEEEEEEGGGGTTS-EEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred cCCCCCCCCcEeeeecCCCCcEEeHHHHCCC-eEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHH
Confidence 8899999999999877888999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|++.+.+.+++.+++|+++.|.++++++.||+.....|+..|++||||++|+|+++++++...+++++++++.|+++|+
T Consensus 141 ~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~alq~ 220 (254)
T 3tjj_A 141 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQY 220 (254)
T ss_dssp HHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhhcc
Confidence 99999887777767899999999999999999987777777899999999999999999888889999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
..++ +++||++|+||+++|+|++.++++||..
T Consensus 221 ~~~~-~~~cp~~W~~g~~~~~~~~~~~~~~~~~ 252 (254)
T 3tjj_A 221 TDKH-GEVAPAGWKPGSETIIPDPAGKLKYFDK 252 (254)
T ss_dssp HHHH-C---------------------------
T ss_pred cccc-CccccCCCCCCCceeccChhHHHHHhhc
Confidence 9888 8999999999999999999999999974
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=293.93 Aligned_cols=191 Identities=57% Similarity=1.040 Sum_probs=179.4
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|+++++.+.+|++++|++|+|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.++
T Consensus 48 l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk-~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~ 126 (240)
T 3qpm_A 48 AKISKPAPQWEGTAVINGEFKELKLSDYRGK-YLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHL 126 (240)
T ss_dssp CCTTSBCCCCEEEEEETTEEEEEEGGGGTTS-EEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CCCCCCCCCcEeeeeeCCCCcEEEHHHhCCC-EEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 7899999999999877888999999999998 999999977999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+.+.+.+++.+++|+++.|.++++++.||+.....|+..|++||||++|+|++++.++...+++++++++.|+++|+
T Consensus 127 ~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~lq~ 206 (240)
T 3qpm_A 127 AWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQY 206 (240)
T ss_dssp HHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 99999877777667899999999999999999987777778999999999999999998888888999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
..++ +++||++|+||++++.|++.+.++||..
T Consensus 207 ~~~~-~~~cp~~W~~g~~~~~~~~~~~~~~~~~ 238 (240)
T 3qpm_A 207 TDKH-GEVCPAGWKPGSDTIIPDPSGKLKYFDK 238 (240)
T ss_dssp HHHH-SCBBCTTCCTTSCCBCSSTTTTHHHHC-
T ss_pred hhhc-CCccCCCCCCCCceecCCHHHHHHHHhh
Confidence 9988 8999999999999999999999999974
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=278.94 Aligned_cols=191 Identities=54% Similarity=1.022 Sum_probs=173.5
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|++.++.+.+|+.++|++++|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+++.++
T Consensus 19 ~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk-~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~ 97 (211)
T 2pn8_A 19 YFQSMPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL 97 (211)
T ss_dssp CCSSCBCCCCEEEEEETTEEEEEEGGGGTTS-EEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CCCCCcCCCeEeecccCCCCcEEEHHHhCCC-eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 7899999999999654567899999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+.+.+..++.+++|+++.|.++++++.||+.....|..+|++||||++|+|++.+.+....+++.+++++.|++|+.
T Consensus 98 ~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~ 177 (211)
T 2pn8_A 98 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQY 177 (211)
T ss_dssp HHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 99998766555556899999999999999999976555657999999999999999998877777899999999999998
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
.+++ +++||++|++|+++|.+.+++-++||+.
T Consensus 178 ~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~~~~ 209 (211)
T 2pn8_A 178 TDKH-GEVCPAGWKPGSETIIPDPAGKLKYFDK 209 (211)
T ss_dssp HHHH-CCBBCTTCCTTSCCBCSSTTTHHHHHCC
T ss_pred cccC-CcccCCCCCCCCccccCCchhHHHHhhh
Confidence 7766 8999999999999999999999999974
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=277.61 Aligned_cols=196 Identities=54% Similarity=0.977 Sum_probs=150.6
Q ss_pred cccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 72 ASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 72 ~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
+.+.+ +.+|+++|+|+++++.+.+|+.++|++++|| ++||+||+++|||+|+.+++.|.+++++|+++|++||+|++|
T Consensus 22 ~~~~~-l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk-~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D 99 (220)
T 1zye_A 22 LEDPA-PAVTQHAPYFKGTAVVSGEFKEISLDDFKGK-YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVD 99 (220)
T ss_dssp ------CCTTSBCCCCEEEEECSSSEEEEEGGGGTTS-EEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESS
T ss_pred ccCCc-ccCCCCCCCcEEEeeeCCCCcEEEHHHhCCC-eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 34444 7899999999999877888999999999997 999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 152 SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
+.+.+++|.+.+.+..++.+++|+++.|.+.++++.||+.....|..+|++||||++|+|++...+....+++.+++++.
T Consensus 100 ~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~ 179 (220)
T 1zye_A 100 SHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRL 179 (220)
T ss_dssp CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence 99999999998877766667899999999999999999987777778999999999999999998887778899999999
Q ss_pred HHHHHHhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 232 LQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 232 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
|++|+..+++ +++||++|++|++++.+.+...++||..
T Consensus 180 l~~l~~~~~~-~~~cp~~W~~g~~~~~~~~~~~~~~~~~ 217 (220)
T 1zye_A 180 VKAFQFVEAH-GEVSPANWTPESPTIKPHPTASREYFEK 217 (220)
T ss_dssp HHHHHHTTC------------------------------
T ss_pred HHHhhhhccc-CCccCCCCCCCCceecCCHHHHHHHHHh
Confidence 9999987655 9999999999999999999999999975
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=270.97 Aligned_cols=192 Identities=54% Similarity=0.992 Sum_probs=175.1
Q ss_pred CCCCCCCCCeEEeeec-CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~-~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|++.++. +.+|+.++|++++|| ++||+||+++|||+|+.+++.|.+++++|+++|++||+|++|+.+.+
T Consensus 6 ~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk-~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~ 84 (202)
T 1uul_A 6 AEDLHPAPDFNETALMPNGTFKKVALTSYKGK-WLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSH 84 (202)
T ss_dssp CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTS-EEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred ccCCCcCCCcEeeeeecCCCccEEEHHHhCCC-eEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 7799999999999663 334489999999998 99999999999999999999999999999998999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++|.+.+.+..++.+++|+++.|.+.++++.||+.....|..+|++||||++|+|++.+.+....+++.+++++.|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 85 LAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence 99999887766666789999999999999999998777777899999999999999998888777889999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhhC
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 271 (271)
..+++ +++||++|++|++++.+++.+.++||+.+
T Consensus 165 ~~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 198 (202)
T 1uul_A 165 FVEKH-GEVCPANWKPGDKTMKPDPEKSKEYFGAV 198 (202)
T ss_dssp HHHHH-SCBBCTTCCTTSCCBCSSTGGGHHHHCC-
T ss_pred hhhhc-CCccCCCcCCCCceeccChhhHHHHHhhh
Confidence 88777 89999999999999999999999999753
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=275.12 Aligned_cols=189 Identities=49% Similarity=0.865 Sum_probs=172.7
Q ss_pred CCCCCCCCCeEEeeecCCCc--eeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEF--INVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g--~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
+.+|+++|+|++.++. .+| +.++|+++ +|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+
T Consensus 21 l~~G~~aP~f~l~~~~-~~G~~~~v~l~d~~~gk-~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~ 98 (213)
T 2i81_A 21 TYVGKEAPFFKAEAVF-GDNSFGEVNLTQFIGKK-YVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKY 98 (213)
T ss_dssp CCBTSBCCCCEEEEEC-TTSCEEEEEGGGGTTTC-EEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred ccCCCcCCCeEeeccc-cCCceeEEeHHHHcCCC-eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 7899999999998541 156 79999999 998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.+++|.+.+.+.+++.+++|+++.|.+.++++.||+.. +.|+.+|++||||++|+|++...+....+++.+++++.|++
T Consensus 99 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~-~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~ 177 (213)
T 2i81_A 99 THLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDA 177 (213)
T ss_dssp HHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCcc-ccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 99999998877666667899999999999999999986 55667999999999999999988877777899999999999
Q ss_pred HHHhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 235 LQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 235 l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
++..+++ +++||++|++|++++.+++++.++||..
T Consensus 178 l~~~~~~-~~~cp~~w~~g~~~~~~~~~~~~~~~~~ 212 (213)
T 2i81_A 178 IQHHEKY-GDVCPANWQKGKVSMKPSEEGVAQYLST 212 (213)
T ss_dssp HHHHHHH-CCBCCTTCCTTSCCBCSSTTTHHHHTTC
T ss_pred HHhhhhc-CCCcCCCCCcCCccccCCchhHHHHhhc
Confidence 9987776 8999999999999999999999999985
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=272.41 Aligned_cols=189 Identities=48% Similarity=0.873 Sum_probs=147.4
Q ss_pred CCCCCCCCCeEEeeecCCCc--eeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEF--INVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g--~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
+.+|+++|+|++.++. .+| +.++|+++ +|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+
T Consensus 25 l~~G~~aP~F~l~~~~-~~G~~~~v~L~d~~~Gk-~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~ 102 (221)
T 2c0d_A 25 SLVTKKAYNFTAQGLN-KNNEIINVDLSSFIGQK-YCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVY 102 (221)
T ss_dssp -CTTSBCCCCEEEEEC-TTSCEEEEEGGGGTTTC-EEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred CCCCCCCCCeEEeccc-cCCCccEEeHHHHcCCC-eEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 6799999999998441 167 89999999 998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.+++|.+.+.+..++.+++|+++.|.++++++.||+. ...|..+|++||||++|+|++.+.++...+.+.+++++.|++
T Consensus 103 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~-~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~ 181 (221)
T 2c0d_A 103 SHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVL-YDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDS 181 (221)
T ss_dssp HHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCE-ETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCc-ccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 9999999876555555678999999999999999996 444557899999999999999988876667889999999999
Q ss_pred HHHhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 235 LQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 235 l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
|+..+++ +++||++|++|++.+.+++.+.++||+.
T Consensus 182 L~~~~~~-~~~cp~~W~~g~~~~~~~~~~~~~~~~~ 216 (221)
T 2c0d_A 182 IIHVDTS-GEVCPINWKKGQKAFKPTTESLIDYMNN 216 (221)
T ss_dssp HHHHHHH-CCSCC-----------------------
T ss_pred HhhhhcC-CCcCCCCCCCCCccccCCcHHHHHHHHh
Confidence 9987776 8999999999999999999999999973
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=262.95 Aligned_cols=178 Identities=37% Similarity=0.724 Sum_probs=159.3
Q ss_pred CCCCCCCCeEEeeecCCCc--eeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEF--INVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g--~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
.+|+++|+|++.++. +| +.++|++++|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||.|+.+.+
T Consensus 2 ~~G~~aP~f~l~~~~--~G~~~~v~l~~~~Gk-~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~ 78 (186)
T 1n8j_A 2 LINTKIKPFKNQAFK--NGEFIEVTEKDTEGR-WSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEE--TTEEEEEEHHHHTTS-EEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCcCCCcEeeccc--CCcceEEEHHHHCCC-eEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 479999999998542 35 79999999998 99999997799999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++|.+.+. +..+++|+++.|.++++++.||+.....|+..|++||||++|+|++.+.+....+++.+++++.|++|+
T Consensus 79 ~~~~~~~~---~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~ 155 (186)
T 1n8j_A 79 KAWHSSSE---TIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 155 (186)
T ss_dssp HHHHHHCT---TGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHcC---cccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 99988762 222578999999999999999998655565689999999999999999877666778999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCch
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPK 262 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~ 262 (271)
...++|+++||++|++|++++.+++.
T Consensus 156 ~~~~~p~~~~p~~w~~~~~~~~~~~~ 181 (186)
T 1n8j_A 156 YVAAHPGEVCPAKWKEGEATLAPSLD 181 (186)
T ss_dssp HHHHSTTCBBCTTCCTTSCCBCCSST
T ss_pred HHhhcCCCccCCCCCCCCccccCChH
Confidence 99999999999999999999998854
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=266.95 Aligned_cols=185 Identities=54% Similarity=0.951 Sum_probs=167.7
Q ss_pred cCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 76 IPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 76 ~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
+.+.+|+++|+|++.++.+.+|++++|++++|| ++||+||.++||++|+.+++.|++++++|+++|++||+|++|+.++
T Consensus 38 ~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk-~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~ 116 (222)
T 3ztl_A 38 MVLLPNRPAPEFKGQAVINGEFKEICLKDYRGK-YVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYS 116 (222)
T ss_dssp --CCSSEECCCCEEEEEETTEEEEEEGGGGTTS-EEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred ccccCCCCCCCeEEecccCCCCcEEeHHHhCCC-eEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 348899999999999776778899999999998 9999999669999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
..+|.+.+.+..+..+++|+++.|.+.++++.||+.....|+.+|++||||++|+|++.+.+....++.++++++.|+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l 196 (222)
T 3ztl_A 117 HLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF 196 (222)
T ss_dssp HHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 99999998777666688999999999999999999977778789999999999999999988877778899999999999
Q ss_pred HHhhhCCCcccCCCCCCCCCCCCCCch
Q 024201 236 QYVQENPDEVCPAGWKPGDKSMKPDPK 262 (271)
Q Consensus 236 ~~~~~~~~~~~p~~~~~~~~~~~~~~~ 262 (271)
+.++++ +++||++|+++++.+.|+++
T Consensus 197 ~~~~~~-~~~c~~~w~~~~~~~~~~~~ 222 (222)
T 3ztl_A 197 QFVEKH-GEVCPVNWKRGQHGIKVNQK 222 (222)
T ss_dssp HHHHHH-SCBBCTTCCTTSCCBCC---
T ss_pred hccccc-CccCCcCcCCCCccccCCCC
Confidence 999887 79999999999999998864
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=260.31 Aligned_cols=188 Identities=51% Similarity=0.880 Sum_probs=154.4
Q ss_pred CCCCCCCCeEEeeecCCCc--eeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEF--INVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g--~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
++|+++|+|++.++. .+| +.++|+++ +|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.
T Consensus 1 ~~G~~aP~f~l~~~~-~~G~~~~~~l~~~~~gk-~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~ 78 (192)
T 2h01_A 1 AFQGQAPSFKAEAVF-GDNTFGEVSLSDFIGKK-YVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFT 78 (192)
T ss_dssp CCSSBCCCCEEEEEC-TTSCEEEEEGGGGTTTC-EEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred CCCCcCCCcEeEeee-cCCceeEEeHHHHcCCC-eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHH
Confidence 379999999998441 167 89999999 998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+++|.+.+.+..++.+++|+++.|.+.++++.||+.. ..|+.+|++||||++|+|++.+.+....+.+.+++++.|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 157 (192)
T 2h01_A 79 HLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF-NESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 157 (192)
T ss_dssp HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred HHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcC-cCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999998877666667899999999999999999986 556678999999999999999887766677899999999999
Q ss_pred HHhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 236 QYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 236 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
+..+++ +++||++|++|++++.|.+..-++||..
T Consensus 158 ~~~~~~-~~~cp~~w~~~~~~~~~~~~~~~~~~~~ 191 (192)
T 2h01_A 158 QHHEKY-GDVCPANWQKGKESMKPSEEGVAKYLSN 191 (192)
T ss_dssp HHHHHH-CCCCCSSCCCC-----------------
T ss_pred hhhhhc-CCCccCCCCCCCccccCCchhhhhHhhc
Confidence 987776 8999999999999999999999999975
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=269.35 Aligned_cols=180 Identities=29% Similarity=0.540 Sum_probs=159.1
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
.+.+|+.+|+|++. +.+| .++|++++|++++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus 2 ~l~iG~~aPdF~l~---~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~ 77 (233)
T 2v2g_A 2 GITLGEVFPNFEAD---STIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADH 77 (233)
T ss_dssp CCCTTCBCCCCEEE---ETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCCCcEEe---cCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHH
Confidence 37799999999998 5567 8999999998799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCC-CcccceEEcCChHHHHHhCCccCC----C--CccceEEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q 024201 157 LAWVQTDRKSGGLG-DLKYPLIADITKSISKSYGVLIPD----Q--GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETL 229 (271)
Q Consensus 157 ~~~~~~~~~~~~~~-~~~f~~l~D~~~~~~~~ygv~~~~----~--g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l 229 (271)
++|.+...+..+.. +++||++.|.++++++.||+.... . +...|++||||++|+|++.++++...+++.++++
T Consensus 78 ~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil 157 (233)
T 2v2g_A 78 KEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEIL 157 (233)
T ss_dssp HHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHH
T ss_pred HHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHH
Confidence 99999765432221 578999999999999999997432 1 2368999999999999999988888889999999
Q ss_pred HHHHHHHHhhhCCCcccCCCCCCCCCCCCCCc
Q 024201 230 RTLQALQYVQENPDEVCPAGWKPGDKSMKPDP 261 (271)
Q Consensus 230 ~~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 261 (271)
+.|++||..+++ ++.||++|++|++++.+..
T Consensus 158 r~l~~Lq~~~~~-~~~~p~~W~~g~~~~~~p~ 188 (233)
T 2v2g_A 158 RVIDSLQLTAQK-KVATPADWQPGDRCMVVPG 188 (233)
T ss_dssp HHHHHHHHHHHS-SEEBCTTCCTTSCEEECTT
T ss_pred HHHHHHHhhccC-CccCCCCcCcCCceEeCCC
Confidence 999999998888 8999999999999987553
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=264.43 Aligned_cols=189 Identities=29% Similarity=0.487 Sum_probs=161.5
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
.+.+|+++|+|++.+. +.+| .++|++++|++++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus 2 ~l~iG~~aP~F~l~~~-~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~ 79 (220)
T 1xcc_A 2 GYHLGATFPNFTAKAS-GIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESH 79 (220)
T ss_dssp CCCTTCBCCCCEECBT-TCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCCCcEeecc-cCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 3679999999999843 1177 8999999998788888877999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC----CC--ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD----QG--IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~----~g--~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
++|.+...+..+-.+++||++.|.++++++.||+.... .| ...|++||||++|+|++.+.++...+++.+++++
T Consensus 80 ~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~ 159 (220)
T 1xcc_A 80 DKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILR 159 (220)
T ss_dssp HHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 99998765431113789999999999999999996432 12 3579999999999999999888888899999999
Q ss_pred HHHHHHHhhhCCCcccCCCCCCCCCCCCCC---chhhHHHh
Q 024201 231 TLQALQYVQENPDEVCPAGWKPGDKSMKPD---PKLSKEYF 268 (271)
Q Consensus 231 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~ 268 (271)
.|++||...++ ++.||++|++|++++.+. ..--+++|
T Consensus 160 ~i~~lq~~~~~-~~~~p~~w~~g~~~~~~p~~~~~~~~~~~ 199 (220)
T 1xcc_A 160 VLKSLQLTYTT-PVATPVNWNEGDKCCVIPTLQDDEISKHF 199 (220)
T ss_dssp HHHHHHHHHHS-SEEBCTTCCTTSCEEECTTCCGGGHHHHC
T ss_pred HHHHHHhhhcC-CcccCCCcCcCCceEeCCCCCHHHHHHHh
Confidence 99999999998 899999999999997654 33345555
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=261.88 Aligned_cols=186 Identities=31% Similarity=0.533 Sum_probs=163.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+.+|+|++. +.+| .++|++++|++++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.+.
T Consensus 5 l~~G~~aP~F~l~---~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~ 80 (224)
T 1prx_A 5 LLLGDVAPNFEAN---TTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL 80 (224)
T ss_dssp CCTTCBCCCCEEE---ETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CCCcCCCCCcEEe---cCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 6799999999998 5677 89999999987888888779999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCC---CCcccceEEcCChHHHHHhCCccCC----C--CccceEEEEEcCCCcEEEEEeccCCCCCCHHHH
Q 024201 158 AWVQTDRKSGGL---GDLKYPLIADITKSISKSYGVLIPD----Q--GIALRGLFIIDKEGVIQHSTINNLAIGRSVDET 228 (271)
Q Consensus 158 ~~~~~~~~~~~~---~~~~f~~l~D~~~~~~~~ygv~~~~----~--g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~ 228 (271)
+|.+...+..++ .+++||++.|.+.++++.||+.... . +...|++||||++|+|++.+.++...+++.+++
T Consensus 81 ~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~ei 160 (224)
T 1prx_A 81 AWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEI 160 (224)
T ss_dssp HHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHH
T ss_pred HHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 999987665543 4789999999999999999997532 1 246899999999999999998888888999999
Q ss_pred HHHHHHHHHhhhCCCcccCCCCCCCCCCCCCC---chhhHHHh
Q 024201 229 LRTLQALQYVQENPDEVCPAGWKPGDKSMKPD---PKLSKEYF 268 (271)
Q Consensus 229 l~~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~ 268 (271)
++.|++||...++ ++.||++|++|++++.+. ..--|++|
T Consensus 161 l~~i~~l~~~~~~-~~~~p~~W~~g~~~~~~p~~~~~~~~~~~ 202 (224)
T 1prx_A 161 LRVVISLQLTAEK-RVATPVDWKDGDSVMVLPTIPEEEAKKLF 202 (224)
T ss_dssp HHHHHHHHHHHHH-CEEBCTTCCTTSCEEECTTSCHHHHHHHC
T ss_pred HHHHHHHHhhccC-CcCCCCCCCCCCceEeCCCCCHHHHHHhh
Confidence 9999999998888 799999999999998754 33345555
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=262.29 Aligned_cols=181 Identities=35% Similarity=0.720 Sum_probs=164.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEec-ccc--cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKL-SDY--IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~L-sd~--~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
+.+|+++|+|++.+ .+| .++| +++ +|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+
T Consensus 5 ~~iG~~aPdF~l~~---~~G-~v~l~~d~l~~GK-~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~ 79 (249)
T 3a2v_A 5 PLIGERFPEMEVTT---DHG-VIKLPDHYVSQGK-WFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVF 79 (249)
T ss_dssp CCTTSBCCCEEEEE---TTE-EEEETHHHHTTTC-EEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred CCCCCCCCCeEEEc---CCC-CEecHHHHhhCCC-EEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHH
Confidence 67999999999984 456 7999 999 998 888777779999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCc-cceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~-~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.+.+|.+.+.+..+. +++||++.|.+.++++.||+.....|. .+|++||||++|+|++..+++...+++.+++++.|+
T Consensus 80 ~~~~w~~~~~~~~~~-~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~ 158 (249)
T 3a2v_A 80 SHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVK 158 (249)
T ss_dssp HHHHHHHHHHHHTCC-CCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHH
Confidence 999999987765544 789999999999999999998766665 789999999999999999888888899999999999
Q ss_pred HHHHhhhCCCcccCCCCCC-----CCCCCCCCchhhHH
Q 024201 234 ALQYVQENPDEVCPAGWKP-----GDKSMKPDPKLSKE 266 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~ 266 (271)
++|...++ +++||++| | |+++|.|++...++
T Consensus 159 alq~~~~~-~~~~Pa~W-~~~~~~g~~~~~~~~~~~~~ 194 (249)
T 3a2v_A 159 ALKLGDSL-KRAVPADW-PNNEIIGEGLIVPPPTTEDQ 194 (249)
T ss_dssp HHHHHHHH-TCBBCTTT-TSBTTTBTCEEECCCCSHHH
T ss_pred HHHhcccc-CccCCCCC-CCCCCCCCCeecCCCCCHHH
Confidence 99999888 89999999 9 99999998776655
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=247.97 Aligned_cols=186 Identities=41% Similarity=0.768 Sum_probs=145.3
Q ss_pred CCCCCCCCCeEEeeecCC-CceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQ-EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~-~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|++.+.++. +++.++|++++|| ++||+||+++|||+|+.+++.|.+++++|+++|++||+|+.|+.+..
T Consensus 1 ~~~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk-~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~ 79 (187)
T 1we0_A 1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGK-WSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVH 79 (187)
T ss_dssp CCTTCBCCCCEEEEECSSSCCEEEETTTTSSS-EEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCCcCCCeEEeccCCCccceEecHHHHCCC-CEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence 468999999999854332 2239999999998 99999999999999999999999999999998999999999999889
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++|.+.+.... +++|+++.|.+.++++.||+.....|..+|++||||++|+|++.+.+....+.+.+++++.|+.++
T Consensus 80 ~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 156 (187)
T 1we0_A 80 KAWHENSPAVG---SIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ 156 (187)
T ss_dssp HHHHHSCHHHH---TCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred HHHHHHhcccc---CCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 99988763211 578999999999999999998766676799999999999999998887666678999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhhC
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 271 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 271 (271)
...++|++.||++|++|++++..++. ||++|
T Consensus 157 ~~~~~~~~~~p~~w~~~~~~~~~~~~----~~~~~ 187 (187)
T 1we0_A 157 YVRENPGEVCPAKWEEGGETLKPSLD----IVGKI 187 (187)
T ss_dssp HHHTSTTCCC-------------------------
T ss_pred hhhhCCCcccccccccCCceeecCHH----HhccC
Confidence 99999999999999999999996543 77765
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=245.34 Aligned_cols=189 Identities=48% Similarity=0.808 Sum_probs=147.4
Q ss_pred CCCCCCCCCeEEeeecCCCce---eEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFI---NVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~---~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
+.+|+++|+|++.+.. .+|+ .++|+++ +|| ++||+||+++|||+|+.+++.|.+++++|+++|++||+|+.|++
T Consensus 1 ~~~G~~~P~f~l~~~~-~~G~~~~~v~l~~~~~gk-~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~ 78 (198)
T 1zof_A 1 MVVTKLAPDFKAPAVL-GNNEVDEHFELSKNLGKN-GVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSE 78 (198)
T ss_dssp CCTTSBCCCCEEEEEC-TTSCEEEEEETTTSCCSS-EEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred CCCCCcCCceEeeccc-CCCcccceEEHHHHhCCC-cEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 3689999999998431 1677 9999999 998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.+++|.+.+.+..+..+++|+++.|.+.++++.||+... .|..+|++||||++|+|++.+.+....+.+.+++++.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~ 157 (198)
T 1zof_A 79 QVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVD 157 (198)
T ss_dssp HHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEET-TTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCccc-CCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 9999999986665555588999999999999999999763 366789999999999999998887666778999999999
Q ss_pred HHHHhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 234 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
+++...++ ++.||++|.++++++.+++...++||..
T Consensus 158 ~l~~~~~~-~~~~p~~w~~~~~~~~~~~~~~~~~~~~ 193 (198)
T 1zof_A 158 ALLHFEEH-GEVCPAGWRKGDKGMKATHQGVAEYLKE 193 (198)
T ss_dssp HHHHHHSS-CCCCC-----------------------
T ss_pred HHHHhhcc-CCccCCcCcCCCccccCCcccccceecc
Confidence 99988777 8999999999999999888888888753
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=232.03 Aligned_cols=149 Identities=34% Similarity=0.600 Sum_probs=128.6
Q ss_pred CcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH
Q 024201 75 EIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 75 ~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
.| +++|+++|+|+|+ +.+|+.++|++++|| ++||+||+++|||+|+.+++.|++++++++++|+.+|+||.|+++
T Consensus 2 ~~-l~vG~~aPdF~l~---~~~G~~~~l~d~~Gk-~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~ 76 (157)
T 4g2e_A 2 HM-VEIGELAPDFELP---DTELKKVKLSALKGK-VVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPF 76 (157)
T ss_dssp CC-CCTTSBCCCCEEE---BTTSCEEEGGGGTTS-CEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHH
T ss_pred Cc-CCCCCCCcCeEeE---CCCCCEEeHHHHCCC-eEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchh
Confidence 45 8999999999998 778889999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC-----ccceEEEEEcCCCcEEEEEeccCCCCC-CHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG-----IALRGLFIIDKEGVIQHSTINNLAIGR-SVDET 228 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g-----~~~P~~~lID~~G~V~~~~~~~~~~~~-~~~e~ 228 (271)
.+++|.+++ +++||+++|.+++++++||+.....+ +..|++||||++|+|++.++++...++ +++++
T Consensus 77 ~~~~~~~~~-------~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~ei 149 (157)
T 4g2e_A 77 SNKAFKEHN-------KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEI 149 (157)
T ss_dssp HHHHHHHHT-------TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHH
T ss_pred HHHHHHHHc-------CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHH
Confidence 999999988 78999999999999999999754433 357999999999999999887655444 78999
Q ss_pred HHHHHHH
Q 024201 229 LRTLQAL 235 (271)
Q Consensus 229 l~~l~~l 235 (271)
++.|++|
T Consensus 150 l~~l~~L 156 (157)
T 4g2e_A 150 EKVVKSL 156 (157)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999876
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=230.15 Aligned_cols=174 Identities=39% Similarity=0.711 Sum_probs=136.4
Q ss_pred CCCCCCCCCeEEeeecC----------CCc--eeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEE
Q 024201 78 PLVGNTAPDFAAEAVFD----------QEF--INVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEI 145 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~----------~~g--~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~v 145 (271)
+.+|+++|+|++.+.++ .+| +.++|++++|| ++||+||+++|||+|+.+++.|.+++++|+++|++|
T Consensus 4 l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk-~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v 82 (195)
T 2bmx_A 4 LTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGK-WRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI 82 (195)
T ss_dssp CCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTC-EEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred CCCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCC-cEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 67999999999996642 126 89999999998 999999999999999999999999999999889999
Q ss_pred EEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCH
Q 024201 146 LGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSV 225 (271)
Q Consensus 146 v~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~ 225 (271)
|+|++|+.+..++|.+.+... .+++|+++.|.+.++++.||+... .|..+|++||||++|+|++.+.+......+.
T Consensus 83 v~Vs~d~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~ 158 (195)
T 2bmx_A 83 LGVSIDSEFAHFQWRAQHNDL---KTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVGRNV 158 (195)
T ss_dssp EEEESSCHHHHHHHHHHCTTG---GGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECTTCCCCH
T ss_pred EEEECCCHHHHHHHHHHhccc---cCCceeEEeCCchHHHHHhCCccc-CCCccceEEEEcCCCeEEEEEecCCCCCCCH
Confidence 999999999999999876321 257899999999999999999865 5667899999999999999988876666789
Q ss_pred HHHHHHHHHHHHhhhCCCcccCCCCCCCCCCCCCCc
Q 024201 226 DETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDP 261 (271)
Q Consensus 226 ~e~l~~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 261 (271)
+++++.|+.++. ++.||++|++|++++.+++
T Consensus 159 ~~l~~~l~~l~~-----~~~~p~~w~~~~~~~~~~~ 189 (195)
T 2bmx_A 159 DEVLRVLDALQS-----DELCASNWRKGDPTLDAGE 189 (195)
T ss_dssp HHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHhh-----CCCcCcccccCCcccCCCh
Confidence 999999998864 4679999999999998764
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=231.35 Aligned_cols=148 Identities=28% Similarity=0.553 Sum_probs=133.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc--cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY--IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~--~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
+++|+++|+|+|+ +.+|+.++|+++ +|| ++||+||+++|||+|+.+++.|++++++|+++|+++|+||.|+++.
T Consensus 5 l~vG~~aPdF~l~---~~~G~~v~Lsd~~~~Gk-~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~ 80 (164)
T 4gqc_A 5 VELGEKAPDFTLP---NQDFEPVNLYEVLKRGR-PAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWC 80 (164)
T ss_dssp CCTTSBCCCCEEE---BTTSCEEEHHHHHHTSS-CEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHH
T ss_pred ccCCCCCcCcEeE---CCCCCEEEHHHHhcCCC-EEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHH
Confidence 8999999999998 778889999999 787 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC----CCccceEEEEEcCCCcEEEEEeccCCCCC-CHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD----QGIALRGLFIIDKEGVIQHSTINNLAIGR-SVDETLR 230 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~----~g~~~P~~~lID~~G~V~~~~~~~~~~~~-~~~e~l~ 230 (271)
+++|.+++ +++||+++|.+++++++||+.... .++..|++||||++|+|++.+++....++ +++++++
T Consensus 81 ~~~~~~~~-------~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~ 153 (164)
T 4gqc_A 81 LKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVR 153 (164)
T ss_dssp HHHHHHHT-------TCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHH
T ss_pred HHHHHHhc-------CcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHH
Confidence 99999988 889999999999999999997433 12457999999999999999887655544 7999999
Q ss_pred HHHHHH
Q 024201 231 TLQALQ 236 (271)
Q Consensus 231 ~l~~l~ 236 (271)
.|++|.
T Consensus 154 ~l~~l~ 159 (164)
T 4gqc_A 154 EANKIA 159 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998773
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-31 Score=212.58 Aligned_cols=152 Identities=31% Similarity=0.486 Sum_probs=136.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|++. +.+|+.+++++++||.++||+||+++|||+|+.+++.|.+++++|+++|++||+|++|+++..+
T Consensus 2 l~~G~~~P~f~l~---~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~ 78 (161)
T 3drn_A 2 VKVGDKAPLFEGI---ADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK 78 (161)
T ss_dssp CCTTSBCCCCEEE---ETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHH
T ss_pred CCCCCcCCCeEee---cCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence 6799999999998 6778899999999994499999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+.+ +++|+++.|.+.++++.||+.. .+..+|++||||++|+|++.+.+.......++++++.|+++|.
T Consensus 79 ~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~--~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~~ 149 (161)
T 3drn_A 79 RFKEKY-------KLPFILVSDPDKKIRELYGAKG--FILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKE 149 (161)
T ss_dssp HHHHHT-------TCCSEEEECTTSHHHHHTTCCC--SSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHh-------CCCceEEECCcHHHHHHcCCCC--cCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhhh
Confidence 999988 7899999999999999999981 1224899999999999999988766667789999999999986
Q ss_pred hhhC
Q 024201 238 VQEN 241 (271)
Q Consensus 238 ~~~~ 241 (271)
....
T Consensus 150 ~~~~ 153 (161)
T 3drn_A 150 EEIS 153 (161)
T ss_dssp HHHC
T ss_pred hhcc
Confidence 6544
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=215.38 Aligned_cols=150 Identities=21% Similarity=0.342 Sum_probs=131.2
Q ss_pred CcCCCCCCCCCCeEEeeecCCCceeEeccc-ccCCcEEEEEEecCCCCCChH-HHHHHHHHHHHHHHhcCcEEEE-EeCC
Q 024201 75 EIPPLVGNTAPDFAAEAVFDQEFINVKLSD-YIGKKYVILFFYPLDFTFVCP-TEITAFSDRYTEFEKLNTEILG-VSTD 151 (271)
Q Consensus 75 ~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~-~~l~~L~~~~~~~~~~gv~vv~-VS~d 151 (271)
..++.+|+++|+|++. .+.+|+.++|++ ++|| ++||+||+++|||+|+ .+++.|++++++|+++|+++|+ ||.|
T Consensus 12 ~~~~~vG~~aPdf~l~--~~~~g~~v~L~d~~~gk-~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D 88 (173)
T 3mng_A 12 SAPIKVGDAIPAVEVF--EGEPGNKVNLAELFKGK-KGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN 88 (173)
T ss_dssp -CCCCTTCBCCCCEEE--CSSTTCEEEHHHHTTTS-EEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS
T ss_pred CCCCCCCCCCCCeEee--eCCCCCEEEhHHHhCCC-cEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 3458899999999997 256778999999 5998 7888888899999999 5999999999999999999997 9999
Q ss_pred CHHHHHHHHHHhhhcCCCCCcc--cceEEcCChHHHHHhCCccCCC-----C--ccceEEEEEcCCCcEEEEEeccCCCC
Q 024201 152 SVFSHLAWVQTDRKSGGLGDLK--YPLIADITKSISKSYGVLIPDQ-----G--IALRGLFIIDKEGVIQHSTINNLAIG 222 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~ygv~~~~~-----g--~~~P~~~lID~~G~V~~~~~~~~~~~ 222 (271)
+++.+++|.+++ +++ |++++|.+++++++||+...+. | ...|++|||| ||+|++.++++...+
T Consensus 89 ~~~~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g 160 (173)
T 3mng_A 89 DAFVTGEWGRAH-------KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTG 160 (173)
T ss_dssp CHHHHHHHHHHT-------TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSC
T ss_pred CHHHHHHHHHHh-------CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCC
Confidence 999999999998 566 9999999999999999986532 2 3579999999 999999999998888
Q ss_pred CCHHHHHHHHHHH
Q 024201 223 RSVDETLRTLQAL 235 (271)
Q Consensus 223 ~~~~e~l~~l~~l 235 (271)
++++++.+.|+.|
T Consensus 161 ~~~~~~~~vl~~l 173 (173)
T 3mng_A 161 LTCSLAPNIISQL 173 (173)
T ss_dssp SSTTSHHHHHHHC
T ss_pred cchHHHHHHHHhC
Confidence 8887777777653
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=210.44 Aligned_cols=147 Identities=26% Similarity=0.427 Sum_probs=131.2
Q ss_pred CCCCCCCCCeE--EeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 78 PLVGNTAPDFA--AEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~--l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
+++|+++|+|+ +. +.+|++++|++++|| ++||+||+++|||+|+.+++.|++++++|+++|++||+|+.|+++.
T Consensus 7 l~~G~~~P~f~~~l~---~~~G~~~~l~~~~gk-~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~ 82 (163)
T 3gkn_A 7 AVLELPAATFDLPLS---LSGGTQTTLRAHAGH-WLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKS 82 (163)
T ss_dssp CCCCCCGGGGGCCEE---CSTTCEECSGGGTTS-CEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred cccCCcCCCcccccc---CCCCCEEEHHHhCCC-cEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 78999999999 98 778889999999999 9999999669999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC--Cc----cceEEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ--GI----ALRGLFIIDKEGVIQHSTINNLAIGRSVDETL 229 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~--g~----~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l 229 (271)
.++|.+++ +++|+++.|.+.++++.||+..... |. .+|++||||++|+|++.+ .+......+++++
T Consensus 83 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~~~~~il 154 (163)
T 3gkn_A 83 HDNFCAKQ-------GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAGHADAVL 154 (163)
T ss_dssp HHHHHHHH-------CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-CSCCSTTHHHHHH
T ss_pred HHHHHHHh-------CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-cCCCcccCHHHHH
Confidence 99999998 7899999999999999999984221 10 189999999999999998 5556667789999
Q ss_pred HHHHHHH
Q 024201 230 RTLQALQ 236 (271)
Q Consensus 230 ~~l~~l~ 236 (271)
+.|++|+
T Consensus 155 ~~l~~l~ 161 (163)
T 3gkn_A 155 AALKAHA 161 (163)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988764
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=220.53 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=136.5
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC-------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST------- 150 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~------- 150 (271)
+.+|+++|+|++. +.+|+.++|++++||.++||+|| ++|||+|+.+++.|++++++|+++|++||+|++
T Consensus 32 l~~G~~aP~f~l~---~~~G~~v~l~~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~ 107 (218)
T 3u5r_E 32 ITLGTRAADFVLP---DAGGNLFTLAEFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFP 107 (218)
T ss_dssp CCTTCBCCCCCEE---CTTCCEECGGGGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCG
T ss_pred CCCCCcCCCcEeE---CCCCCEEeHHHhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccc
Confidence 8899999999998 67888999999999955999999 899999999999999999999999999999999
Q ss_pred -CCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCC-----CCCC
Q 024201 151 -DSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA-----IGRS 224 (271)
Q Consensus 151 -d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~-----~~~~ 224 (271)
|+.+.+++|.+++ +++|+++.|.+.++++.||+. .+|++||||++|+|+++...+.. ....
T Consensus 108 ~d~~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~ 174 (218)
T 3u5r_E 108 EETLERVGAEVKAY-------GYGFPYLKDASQSVAKAYGAA------CTPDFFLYDRERRLVYHGQFDDARPGNGKDVT 174 (218)
T ss_dssp GGSHHHHHHHHHHH-------TCCSCEEECTTCHHHHHHTCC------EESEEEEECTTCBEEEEECSSSCCTTSCCCCC
T ss_pred cCCHHHHHHHHHHh-------CCCccEEECCccHHHHHcCCC------CCCeEEEECCCCcEEEeccccccccccccccC
Confidence 6777888999988 789999999999999999999 89999999999999987432211 1223
Q ss_pred HHHHHHHHHHHHHhh-----hCCCcccCCCCCCCC
Q 024201 225 VDETLRTLQALQYVQ-----ENPDEVCPAGWKPGD 254 (271)
Q Consensus 225 ~~e~l~~l~~l~~~~-----~~~~~~~p~~~~~~~ 254 (271)
.+++.+.|+++...+ +.+..+|+++|++++
T Consensus 175 ~~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~~ 209 (218)
T 3u5r_E 175 GADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAGN 209 (218)
T ss_dssp CHHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC-
T ss_pred HHHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCCC
Confidence 577777887775332 445789999999875
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=213.51 Aligned_cols=147 Identities=28% Similarity=0.410 Sum_probs=131.8
Q ss_pred CCCCCC----CCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 78 PLVGNT----APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 78 ~~~G~~----~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
+++|+. +|+|++. +.+|++++|++++|| ++||+||+++|||+|+.+++.|++++++|+++|++||+|+.|++
T Consensus 21 l~~Gd~ig~~aP~f~l~---~~~G~~v~l~d~~Gk-~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~ 96 (179)
T 3ixr_A 21 MNIGDTLNHSLLNHPLM---LSGSTCKTLSDYTNQ-WLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSV 96 (179)
T ss_dssp SCTTCBCCHHHHHCCEE---EGGGEEECGGGGTTS-EEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCH
T ss_pred cCcCcccCCcCCCeeEE---CCCCCEEeHHHHCCC-CEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 788988 9999998 678889999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC--C----ccceEEEEEcCCCcEEEEEeccCCCCCCHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ--G----IALRGLFIIDKEGVIQHSTINNLAIGRSVDE 227 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~--g----~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e 227 (271)
+..++|++++ +++|+++.|.+.++++.||+..... | ...|++||||++|+|++.+ .+......+++
T Consensus 97 ~~~~~~~~~~-------~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-~~~~~~~~~~~ 168 (179)
T 3ixr_A 97 KSHDSFCAKQ-------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-RQVKVPGHAEE 168 (179)
T ss_dssp HHHHHHHHHH-------TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-CSCCSTTHHHH
T ss_pred HHHHHHHHHc-------CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-cCCCCCCCHHH
Confidence 9999999998 7899999999999999999974321 1 1369999999999999997 55566678899
Q ss_pred HHHHHHHHH
Q 024201 228 TLRTLQALQ 236 (271)
Q Consensus 228 ~l~~l~~l~ 236 (271)
+++.|++++
T Consensus 169 il~~l~~l~ 177 (179)
T 3ixr_A 169 VLNKLKAHA 177 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=205.87 Aligned_cols=145 Identities=24% Similarity=0.404 Sum_probs=129.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|++. +.+|+.++|++++|| ++||+||+++||++|+.+++.|++++++| +|++||+||.|+++.++
T Consensus 16 ~~~G~~~P~f~l~---~~~G~~v~l~~~~gk-~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~~ 89 (163)
T 1psq_A 16 LQVGDKALDFSLT---TTDLSKKSLADFDGK-KKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQK 89 (163)
T ss_dssp CCTTSBCCCCEEE---CTTSCEEEGGGGTTS-EEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHH
T ss_pred CCCCCCCCCEEEE---cCCCcEeeHHHhCCC-EEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHHH
Confidence 7899999999998 778889999999998 89999997799999999999999999999 69999999999999999
Q ss_pred HHHHHhhhcCCCCCc-ccceEEc-CChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC-CCCCCHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDL-KYPLIAD-ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL-AIGRSVDETLRTLQA 234 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~-~f~~l~D-~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~-~~~~~~~e~l~~l~~ 234 (271)
+|.+++ ++ +|+++.| .++++++.||+.....|+..|++||||++|+|++.+.+.. ....+.+++++.|++
T Consensus 90 ~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 90 RWCGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp HHHHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred HHHHhc-------CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 999998 77 8999999 8899999999986555666799999999999999987643 344578999998875
Q ss_pred H
Q 024201 235 L 235 (271)
Q Consensus 235 l 235 (271)
|
T Consensus 163 l 163 (163)
T 1psq_A 163 L 163 (163)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=206.46 Aligned_cols=148 Identities=23% Similarity=0.348 Sum_probs=131.3
Q ss_pred cccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 72 ASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 72 ~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
..+.. +.+|+++|+|++. +.+|+.++|++++|| ++||+||+++|||+|+.+++.|++++++ +|++||+||.|
T Consensus 15 ~~~~~-l~~G~~aP~f~l~---~~~G~~~~l~~~~Gk-~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d 86 (166)
T 3p7x_A 15 LKGQQ-INEGDFAPDFTVL---DNDLNQVTLADYAGK-KKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISAD 86 (166)
T ss_dssp EESCC-CCTTSBCCCCEEE---CTTSCEEEGGGGTTS-CEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESS
T ss_pred eeccc-CCCCCCCCCeEEE---cCCCCEEeHHHhCCC-cEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECC
Confidence 33444 8899999999998 778889999999998 8999999899999999999999999988 69999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCc-ccceEEcC-ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEecc-CCCCCCHHHH
Q 024201 152 SVFSHLAWVQTDRKSGGLGDL-KYPLIADI-TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINN-LAIGRSVDET 228 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~-~f~~l~D~-~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~-~~~~~~~~e~ 228 (271)
+++.+++|.+++ ++ +|+++.|. +.++++.||+.....|...|++||||++|+|++.+++. .....+.+++
T Consensus 87 ~~~~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~i 159 (166)
T 3p7x_A 87 LPFAQKRWCASA-------GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAA 159 (166)
T ss_dssp CHHHHHHHHHHH-------TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHH
T ss_pred CHHHHHHHHHHc-------CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHH
Confidence 999999999998 77 89999999 89999999999766666689999999999999997654 3445678999
Q ss_pred HHHHHH
Q 024201 229 LRTLQA 234 (271)
Q Consensus 229 l~~l~~ 234 (271)
++.|+.
T Consensus 160 l~~l~~ 165 (166)
T 3p7x_A 160 LAAYKN 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 988875
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=202.58 Aligned_cols=151 Identities=34% Similarity=0.593 Sum_probs=134.4
Q ss_pred CcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH
Q 024201 75 EIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 75 ~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
.| +.+|+++|+|++. +.+|+.+++++++||+++||+||+++||++|+.+++.|.+++++|+++|+++|+|++|+.+
T Consensus 7 ~~-~~~G~~~p~f~l~---~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~ 82 (160)
T 1xvw_A 7 HM-LNVGATAPDFTLR---DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPP 82 (160)
T ss_dssp CC-CCTTSBCCCCEEE---CTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHH
T ss_pred CC-CCCCCCCCCeEeE---cCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHH
Confidence 35 7899999999998 6788899999999987899999889999999999999999999998889999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcC--ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADI--TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~--~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
..++|.+++ +++|+++.|. +.++++.||+.....|+..|++||||++|+|++.+.+.......++++++.|
T Consensus 83 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l 155 (160)
T 1xvw_A 83 THKIWATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDAL 155 (160)
T ss_dssp HHHHHHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHH
T ss_pred HHHHHHHhc-------CCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence 999999998 7899999996 8999999999855444444599999999999999888766666899999999
Q ss_pred HHHH
Q 024201 233 QALQ 236 (271)
Q Consensus 233 ~~l~ 236 (271)
++++
T Consensus 156 ~~l~ 159 (160)
T 1xvw_A 156 AALT 159 (160)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8764
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=204.70 Aligned_cols=142 Identities=22% Similarity=0.413 Sum_probs=125.1
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|++. +.+|+.++|++++|| ++||+||+++|||+|+.+++.|++++++| +|++||+||.|+++.++
T Consensus 17 ~~~G~~~P~f~l~---~~~G~~v~l~~~~gk-~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~~~~ 90 (165)
T 1q98_A 17 PQVGEIVENFILV---GNDLADVALNDFASK-RKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPFAQA 90 (165)
T ss_dssp CCTTCBCCCCEEE---CTTSCEEEGGGGTTS-EEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHHHHT
T ss_pred CCCCCCCCCeEEE---CCCCCEEehHHhCCC-eEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHHHHH
Confidence 7899999999998 778889999999998 89999998999999999999999999999 69999999999988888
Q ss_pred HHHHHhhhcCCCCCc-ccceEEcC-ChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEec-cCCCCCCHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDL-KYPLIADI-TKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTIN-NLAIGRSVDETLRT 231 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~-~f~~l~D~-~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~-~~~~~~~~~e~l~~ 231 (271)
+|.+++ ++ +|+++.|. +.++++.||+.... .|.+.|++||||++|+|++.+.+ +.....+++++++.
T Consensus 91 ~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~~ 163 (165)
T 1q98_A 91 RFCGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAV 163 (165)
T ss_dssp TCTTTT-------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHT
T ss_pred HHHHHc-------CCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHHh
Confidence 888876 67 79999998 89999999997532 34567999999999999999875 44556678888876
Q ss_pred H
Q 024201 232 L 232 (271)
Q Consensus 232 l 232 (271)
|
T Consensus 164 l 164 (165)
T 1q98_A 164 L 164 (165)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=203.59 Aligned_cols=144 Identities=24% Similarity=0.368 Sum_probs=124.8
Q ss_pred CCCCCCCCCCeEEeeecCCCc--eeEeccc-ccCCcEEEEEEecCCCCCChH-HHHHHHHHHHHHHHhcCcE-EEEEeCC
Q 024201 77 PPLVGNTAPDFAAEAVFDQEF--INVKLSD-YIGKKYVILFFYPLDFTFVCP-TEITAFSDRYTEFEKLNTE-ILGVSTD 151 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g--~~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~-~~l~~L~~~~~~~~~~gv~-vv~VS~d 151 (271)
.+++|+++|+|++... +.+| +.++|++ ++|| ++||+||+++|||+|+ .+++.|++++++|+++|++ ||+||.|
T Consensus 3 ~~~~G~~aP~f~l~~~-~~~G~~~~~~l~~~~~gk-~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d 80 (162)
T 1tp9_A 3 PIAVGDVLPDGKLAYF-DEQDQLQEVSVHSLVAGK-KVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN 80 (162)
T ss_dssp CCCTTCBCCCCEEEEE-CTTSCEEEEESHHHHTTS-EEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cCCCCCCCCCeEEEee-cCCCCceeEeHHHHhCCC-cEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 4789999999998632 5678 8999999 8998 8999999999999999 8999999999999999999 9999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCc--ccceEEcCChHHHHHhCCccCC--CCc---cceEEEEEcCCCcEEEEEeccCCCCC-
Q 024201 152 SVFSHLAWVQTDRKSGGLGDL--KYPLIADITKSISKSYGVLIPD--QGI---ALRGLFIIDKEGVIQHSTINNLAIGR- 223 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~--~f~~l~D~~~~~~~~ygv~~~~--~g~---~~P~~~lID~~G~V~~~~~~~~~~~~- 223 (271)
+++.+++|.+++ ++ +|+++.|.+++++++||+.... .|+ ..|++|||| +|+|++.++++ ..++
T Consensus 81 ~~~~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~~~~ 151 (162)
T 1tp9_A 81 DPFVMKAWAKSY-------PENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG-GGEFT 151 (162)
T ss_dssp CHHHHHHHHHTC-------TTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS-SSCCS
T ss_pred CHHHHHHHHHhc-------CCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC-CCCCc
Confidence 999999999987 56 7999999999999999997432 232 479999999 99999999876 4333
Q ss_pred --CHHHHHHH
Q 024201 224 --SVDETLRT 231 (271)
Q Consensus 224 --~~~e~l~~ 231 (271)
+++++++.
T Consensus 152 ~~~~~~vl~~ 161 (162)
T 1tp9_A 152 VSSAEDILKD 161 (162)
T ss_dssp SCSHHHHHTT
T ss_pred cCCHHHHHhh
Confidence 57877754
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=203.24 Aligned_cols=150 Identities=23% Similarity=0.322 Sum_probs=130.7
Q ss_pred ecccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024201 71 KASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST 150 (271)
Q Consensus 71 ~~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~ 150 (271)
...+.. +.+|+++|+|++. +.+|+.+++++++|| ++||+||+++|||+|+.+++.|++++++| +|++||+||.
T Consensus 15 ~~~~~~-l~~g~~~P~f~l~---~~~G~~~~l~~~~gk-~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~ 87 (171)
T 2yzh_A 15 TLVGPE-LKVGDRAPEAVVV---TKDLQEKIVGGAKDV-VQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSM 87 (171)
T ss_dssp EBCSCC-CCTTSBCCCEEEE---ETTSCEEEESSCCSS-EEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEES
T ss_pred eecCCc-CCCCCcCCceEEE---CCCCCEeeHHHhCCC-eEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeC
Confidence 334444 8899999999998 677889999999998 89999998999999999999999999999 6999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCc-ccceEEc-CChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEeccC-CCCCC
Q 024201 151 DSVFSHLAWVQTDRKSGGLGDL-KYPLIAD-ITKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINNL-AIGRS 224 (271)
Q Consensus 151 d~~~~~~~~~~~~~~~~~~~~~-~f~~l~D-~~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~~-~~~~~ 224 (271)
|+++.+++|.+++ ++ +|+++.| .+.++ +.||+.... .|+..|++||||++|+|++.+.+.. ....+
T Consensus 88 d~~~~~~~~~~~~-------~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~ 159 (171)
T 2yzh_A 88 DLPFAQKRFCESF-------NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPN 159 (171)
T ss_dssp SCHHHHHHHHHHT-------TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCC
T ss_pred CCHHHHHHHHHHc-------CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCC
Confidence 9999999999987 67 8999999 78899 999998543 3556899999999999999987643 34557
Q ss_pred HHHHHHHHHHH
Q 024201 225 VDETLRTLQAL 235 (271)
Q Consensus 225 ~~e~l~~l~~l 235 (271)
.+++++.|++|
T Consensus 160 ~~~ll~~l~~l 170 (171)
T 2yzh_A 160 YDEVVNKVKEL 170 (171)
T ss_dssp CHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 89999998875
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=209.67 Aligned_cols=148 Identities=24% Similarity=0.437 Sum_probs=130.2
Q ss_pred ecccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024201 71 KASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST 150 (271)
Q Consensus 71 ~~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~ 150 (271)
...+.. +.+|+++|+|++. +.+|+.++|++++|| ++||+||+++||++|+.+++.|++++++| +|++||+||.
T Consensus 46 ~~~~~~-l~~G~~aPdf~l~---d~~G~~v~L~d~~Gk-~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~ 118 (200)
T 3zrd_A 46 SVAGKL-PQIGDKAKDFTLV---AKDLSDVALSSFAGK-RKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISS 118 (200)
T ss_dssp EEESCC-CCTTCBCCCCEEE---CTTSCEEEGGGGTTS-EEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEES
T ss_pred eeeccc-CCCCCCCCCeEEE---CCCCCEEcHHHhCCC-cEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEEC
Confidence 344555 8999999999998 778889999999998 89999998899999999999999999999 6999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCc-ccceEEcC-ChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEecc-CCCCCC
Q 024201 151 DSVFSHLAWVQTDRKSGGLGDL-KYPLIADI-TKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINN-LAIGRS 224 (271)
Q Consensus 151 d~~~~~~~~~~~~~~~~~~~~~-~f~~l~D~-~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~-~~~~~~ 224 (271)
|+++..++|.+++ ++ +|+++.|. +++++++||+.... .|++.|++||||++|+|++.+++. .....+
T Consensus 119 D~~~~~~~~~~~~-------~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~ 191 (200)
T 3zrd_A 119 DLPFAQSRFCGAE-------GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPN 191 (200)
T ss_dssp SCHHHHTTCTTTT-------TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCC
T ss_pred CCHHHHHHHHHHc-------CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCC
Confidence 9998888888876 78 99999999 99999999998544 455689999999999999998754 455667
Q ss_pred HHHHHHHH
Q 024201 225 VDETLRTL 232 (271)
Q Consensus 225 ~~e~l~~l 232 (271)
++++++.|
T Consensus 192 ~~~~l~~L 199 (200)
T 3zrd_A 192 YDAALAAL 199 (200)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88888776
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=208.49 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=125.6
Q ss_pred ccCcCCCCCCCCCCeEEeeecCCCc-eeEeccc-ccCCcEEEEEEecCCCCCChHH-HHHHHHHHHHHHHhcCcE-EEEE
Q 024201 73 SVEIPPLVGNTAPDFAAEAVFDQEF-INVKLSD-YIGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEFEKLNTE-ILGV 148 (271)
Q Consensus 73 ~~~~~~~~G~~~Pdf~l~~~~~~~g-~~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~~-~l~~L~~~~~~~~~~gv~-vv~V 148 (271)
...+.+++|+++|+|+++++. .+| +.++|++ ++|| ++||+||+++|||+|+. |+|.|++++++|+++|++ ||+|
T Consensus 21 ~~~~~l~vG~~aPdf~l~~~~-~~G~~~v~L~d~~~Gk-~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~I 98 (184)
T 3uma_A 21 QSMMTIAVGDKLPNATFKEKT-ADGPVEVTTELLFKGK-RVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVV 98 (184)
T ss_dssp CCSSCCCTTCBCCCCEEEEEE-TTEEEEEEHHHHHTTS-EEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEE
T ss_pred cccCcCCCCCCCCCcEeeccc-CCCceEEeHHHHhCCC-CEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 334558999999999999542 267 8999999 8998 77777777999999999 899999999999999999 9999
Q ss_pred eCCCHHHHHHHHHHhhhcCCCCCcc--cceEEcCChHHHHHhCCccCC--CCc---cceEEEEEcCCCcEEEEEeccCCC
Q 024201 149 STDSVFSHLAWVQTDRKSGGLGDLK--YPLIADITKSISKSYGVLIPD--QGI---ALRGLFIIDKEGVIQHSTINNLAI 221 (271)
Q Consensus 149 S~d~~~~~~~~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~ygv~~~~--~g~---~~P~~~lID~~G~V~~~~~~~~~~ 221 (271)
|.|+++.+++|.+++ +++ |++++|.+++++++||+.... .|+ ..|++|||| ||+|++.++++...
T Consensus 99 s~d~~~~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g 170 (184)
T 3uma_A 99 AVNDLHVMGAWATHS-------GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPG 170 (184)
T ss_dssp ESSCHHHHHHHHHHH-------TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTT
T ss_pred ECCCHHHHHHHHHHh-------CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCCC
Confidence 999999999999998 667 999999999999999998542 232 468899997 99999999886543
Q ss_pred C---CCHHHHHHH
Q 024201 222 G---RSVDETLRT 231 (271)
Q Consensus 222 ~---~~~~e~l~~ 231 (271)
. ..++++|+.
T Consensus 171 ~~~~~~~~~vL~~ 183 (184)
T 3uma_A 171 QATASGAAAMLEL 183 (184)
T ss_dssp CCSTTSHHHHHHH
T ss_pred CCcCCCHHHHHhh
Confidence 2 456776664
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=204.10 Aligned_cols=161 Identities=17% Similarity=0.221 Sum_probs=136.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC-------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST------- 150 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~------- 150 (271)
+.+|+.+|+|++.. +.+|+.++|++++||+++||+|| ++||++|+.+++.|.+++++|+++|+.+|+|++
T Consensus 18 ~~~g~~~p~f~l~~--~~~G~~~~l~~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~ 94 (196)
T 2ywi_A 18 FPLGKQAPPFALTN--VIDGNVVRLEDVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYP 94 (196)
T ss_dssp CCTTCBCCCCEEEE--TTTCCEEEHHHHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCG
T ss_pred CCcCCcCCceeeee--cCCCCEEeHHHhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccc
Confidence 78999999999961 45677999999999856999999 999999999999999999999998999999999
Q ss_pred -CCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC-----CCCCC
Q 024201 151 -DSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL-----AIGRS 224 (271)
Q Consensus 151 -d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~-----~~~~~ 224 (271)
|+.+..++|.+.+ +++|+++.|.+.++++.|++. .+|++||||++|+|+++..... ....+
T Consensus 95 ~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~ 161 (196)
T 2ywi_A 95 EDSPENMKKVAEEL-------GYPFPYLYDETQEVAKAYDAA------CTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVT 161 (196)
T ss_dssp GGSHHHHHHHHHHH-------TCCSCEEECSSCHHHHHHTCC------EESEEEEEETTCBEEEEECSSSCCTTTCCCCC
T ss_pred ccCHHHHHHHHHHc-------CCCceEEECCchHHHHHhCCC------CCCeEEEEcCCCeEEEccccCcccccccCccC
Confidence 5677888899888 789999999999999999998 8999999999999999854321 11225
Q ss_pred HHHHHHHHHHHHHhh-----hCCCcccCCCCCCCC
Q 024201 225 VDETLRTLQALQYVQ-----ENPDEVCPAGWKPGD 254 (271)
Q Consensus 225 ~~e~l~~l~~l~~~~-----~~~~~~~p~~~~~~~ 254 (271)
.+++.+.|+.+...+ ..+..+|+++|++++
T Consensus 162 ~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~~ 196 (196)
T 2ywi_A 162 GESIRAALDALLEGRPVPEKQKPSIGCSIKWKPSA 196 (196)
T ss_dssp CHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccCC
Confidence 678888888775332 345889999999875
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=201.83 Aligned_cols=145 Identities=18% Similarity=0.252 Sum_probs=122.9
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHH-HHHHHHHHHHHHHhcCc-EEEEEeCCCH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEFEKLNT-EILGVSTDSV 153 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~-~l~~L~~~~~~~~~~gv-~vv~VS~d~~ 153 (271)
.+++|+++|+|+++ .+.+|+.++|+++ +|| ++||+||+++|||+|+. ++|.|++++++|+++|+ +||+||.|++
T Consensus 2 ~l~~G~~aP~f~l~--~~~~G~~v~L~d~~~Gk-~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~ 78 (167)
T 2wfc_A 2 PIKEGDKLPAVTVF--GATPNDKVNMAELFAGK-KGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDS 78 (167)
T ss_dssp CCCTTCBCCCCEEE--SSSTTCEEEHHHHTTTS-EEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCH
T ss_pred CCCCCCcCCCcEee--cCCCCcEEeHHHHhCCC-cEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCH
Confidence 47899999999997 2567789999999 998 89999988999999999 99999999999999999 9999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcc--cceEEcCChHHHHHhCCccCCC---C--ccceEEEEEcCCCcEEEEEeccCCCCCC--
Q 024201 154 FSHLAWVQTDRKSGGLGDLK--YPLIADITKSISKSYGVLIPDQ---G--IALRGLFIIDKEGVIQHSTINNLAIGRS-- 224 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~ygv~~~~~---g--~~~P~~~lID~~G~V~~~~~~~~~~~~~-- 224 (271)
+.+++|.+++ +++ |+++.|.+++++++||+..... | ...|++||| ++|+|++.++++...+..
T Consensus 79 ~~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~~~~~~~~ 150 (167)
T 2wfc_A 79 FVMDAWGKAH-------GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPDGKGLTCS 150 (167)
T ss_dssp HHHHHHHHHT-------TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTTSSSSSTT
T ss_pred HHHHHHHHhc-------CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCCCCcceec
Confidence 9999999988 666 9999999999999999974310 1 135999999 999999999887655443
Q ss_pred -HHHHHHHH
Q 024201 225 -VDETLRTL 232 (271)
Q Consensus 225 -~~e~l~~l 232 (271)
++.+++.|
T Consensus 151 ~~~~~~~~~ 159 (167)
T 2wfc_A 151 LAPNILSQL 159 (167)
T ss_dssp SHHHHHHHH
T ss_pred cHHHHHHHh
Confidence 45444443
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=207.10 Aligned_cols=151 Identities=18% Similarity=0.193 Sum_probs=131.0
Q ss_pred eecccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChH-----HHHHHHHHHHHHHHhcCcE
Q 024201 70 VKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCP-----TEITAFSDRYTEFEKLNTE 144 (271)
Q Consensus 70 ~~~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~-----~~l~~L~~~~~~~~~~gv~ 144 (271)
....+.+ +.+|+++|+|+|. +.+|+.++|++++|| ++||+||++.|||+|. .+++.|.++ | +|++
T Consensus 15 ~~~~g~~-l~vG~~APdFtL~---d~~G~~vsLsd~~Gk-~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~ 84 (224)
T 3keb_A 15 LPVIGDF-PRKGDYLPSFMLV---DDQKHDAALESFSHT-PKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLK 84 (224)
T ss_dssp EECBSCC-CCTTCBCCCCEEE---ETTSCEEEGGGGTTC-CEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSE
T ss_pred eeeecCc-CCCCCCCCCeEEE---CCCCCEEeHHHhCCC-cEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCE
Confidence 3445555 8999999999998 667889999999998 8999999877799999 899988887 4 6999
Q ss_pred EEEEeCCCHHHHHHHHHHhhhcCCCCCc-ccceEEcC-ChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEeccC
Q 024201 145 ILGVSTDSVFSHLAWVQTDRKSGGLGDL-KYPLIADI-TKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINNL 219 (271)
Q Consensus 145 vv~VS~d~~~~~~~~~~~~~~~~~~~~~-~f~~l~D~-~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~~ 219 (271)
||+||.|+++.+++|.+.+ ++ +|++++|. ++++++.||+.... .|+..|++||||++|+|++.++...
T Consensus 85 VvgIS~Ds~~~~~~f~~~~-------gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~ 157 (224)
T 3keb_A 85 LIVITVDSPSSLARARHEH-------GLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLAN 157 (224)
T ss_dssp EEEEESSCHHHHHHHHHHH-------CCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSB
T ss_pred EEEEECCCHHHHHHHHHHc-------CCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCC
Confidence 9999999999999999998 67 69999998 69999999998654 4667899999999999999988654
Q ss_pred CC-CCCHHHHHHHHHHHHH
Q 024201 220 AI-GRSVDETLRTLQALQY 237 (271)
Q Consensus 220 ~~-~~~~~e~l~~l~~l~~ 237 (271)
.. ..+.+++++.|+.++.
T Consensus 158 ~~~~pd~~evl~~L~~l~~ 176 (224)
T 3keb_A 158 TRDFFDFDAIEKLLQEGEQ 176 (224)
T ss_dssp TTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhhh
Confidence 43 4579999999998853
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=201.12 Aligned_cols=158 Identities=16% Similarity=0.262 Sum_probs=132.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC-------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST------- 150 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~------- 150 (271)
+.+|+.+|+|++. +.+|+.++|++++|| ++||+|| ++||++|+.+++.|.+++++|+++ +.||+|+.
T Consensus 7 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~ 80 (188)
T 2cvb_A 7 LPLESPLIDAELP---DPRGGRYRLSQFHEP-LLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYP 80 (188)
T ss_dssp CCTTCBCCCCEEE---CTTSCEEEGGGCCSS-EEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCG
T ss_pred CCCCCCCCCceee---cCCCCEEeHHHhCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCcccccc
Confidence 7899999999998 678889999999997 9999999 999999999999999999999987 99999999
Q ss_pred -CCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC----CCCCCH
Q 024201 151 -DSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL----AIGRSV 225 (271)
Q Consensus 151 -d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~----~~~~~~ 225 (271)
|+.+..++|.+.+ +++|+++.|.+.++++.||+. .+|++||||++|+|++...... ....+.
T Consensus 81 ~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~ 147 (188)
T 2cvb_A 81 EDAPEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQS 147 (188)
T ss_dssp GGSHHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEEECSSSCTTCGGGCCC
T ss_pred ccCHHHHHHHHHHh-------CCCceEEECCcchHHHHcCCC------CCCeEEEECCCCcEEEEEecCCccccccccCH
Confidence 5667788898888 789999999999999999998 8999999999999999822110 011134
Q ss_pred HHHHHHHHHHHHh-----hhCCCcccCCCCCCCC
Q 024201 226 DETLRTLQALQYV-----QENPDEVCPAGWKPGD 254 (271)
Q Consensus 226 ~e~l~~l~~l~~~-----~~~~~~~~p~~~~~~~ 254 (271)
+++.+.|+.+... ...+..+|+++|+||+
T Consensus 148 ~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~ 181 (188)
T 2cvb_A 148 HDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN 181 (188)
T ss_dssp CHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred HHHHHHHHHHHcCCCCCcccCCCCceEEEecCCC
Confidence 6677777766432 2344789999999877
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=200.13 Aligned_cols=148 Identities=22% Similarity=0.329 Sum_probs=127.1
Q ss_pred CcCCCCCCCCCCeEEeeecC-------CCceeEecccc-cCCcEEEEEEecCCCCCChHH-HHHHHHHHHHHHHhcCc-E
Q 024201 75 EIPPLVGNTAPDFAAEAVFD-------QEFINVKLSDY-IGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEFEKLNT-E 144 (271)
Q Consensus 75 ~~~~~~G~~~Pdf~l~~~~~-------~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~-~l~~L~~~~~~~~~~gv-~ 144 (271)
.| +.+||++|++++..+.+ ...++++|+++ +|| ++||+|||++|||+|.. |++.|++.+++|+++|+ +
T Consensus 8 ~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk-~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~ 85 (176)
T 4f82_A 8 HM-IQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGK-RVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDE 85 (176)
T ss_dssp CC-CCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTC-EEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCE
T ss_pred hh-hhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCC-eEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 35 88999999999998866 45689999997 998 78899999999999999 99999999999999999 9
Q ss_pred EEEEeCCCHHHHHHHHHHhhhcCCCCCcc--cceEEcCChHHHHHhCCccCC--CCc---cceEEEEEcCCCcEEEEEec
Q 024201 145 ILGVSTDSVFSHLAWVQTDRKSGGLGDLK--YPLIADITKSISKSYGVLIPD--QGI---ALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 145 vv~VS~d~~~~~~~~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~ygv~~~~--~g~---~~P~~~lID~~G~V~~~~~~ 217 (271)
||+||+|+++.+++|.+++ +++ |++++|.+.+++++||+..+. .|+ ..|.+||| +||+|++.+++
T Consensus 86 VigIS~D~~~~~~~f~~~~-------~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~ 157 (176)
T 4f82_A 86 IWCVSVNDAFVMGAWGRDL-------HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVE 157 (176)
T ss_dssp EEEEESSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHh-------CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEc
Confidence 9999999999999999998 555 999999999999999998654 342 35999999 99999999987
Q ss_pred cCC--CCCCHHHHHHHH
Q 024201 218 NLA--IGRSVDETLRTL 232 (271)
Q Consensus 218 ~~~--~~~~~~e~l~~l 232 (271)
+.. ...+++++|+.|
T Consensus 158 ~~~~~~~~~a~~vL~~L 174 (176)
T 4f82_A 158 APGKFEVSDAASVLATL 174 (176)
T ss_dssp CTTCCSSSSHHHHHHTC
T ss_pred CCCCcchhhHHHHHHHh
Confidence 632 223566666654
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=204.91 Aligned_cols=148 Identities=24% Similarity=0.396 Sum_probs=129.2
Q ss_pred CCCCCCCCCCeEEeeecCCCce--eEeccc-ccCCcEEEEEEecCCCCCChH-HHHHHHHHHHHHHHhcCc-EEEEEeCC
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFI--NVKLSD-YIGKKYVILFFYPLDFTFVCP-TEITAFSDRYTEFEKLNT-EILGVSTD 151 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~--~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~-~~l~~L~~~~~~~~~~gv-~vv~VS~d 151 (271)
.+.+|+++|+|++.++. +|+ .++|++ ++|| ++||+||+++|||+|+ .++|.|++++++|+++|+ +||+||.|
T Consensus 2 ~~~~G~~aP~f~l~~~~--~g~~~~v~l~~~~~gk-~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d 78 (241)
T 1nm3_A 2 SSMEGKKVPQVTFRTRQ--GDKWVDVTTSELFDNK-TVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN 78 (241)
T ss_dssp -CCTTSBCCCCEEEEEE--TTEEEEEEHHHHHTTS-EEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CccCCCCCCCeEEEccc--CCCceeecHHHHhCCC-eEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcC
Confidence 37799999999998542 455 899999 8998 8999999999999999 999999999999999999 99999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCcc-cceEEcCChHHHHHhCCccCC--CCc---cceEEEEEcCCCcEEEEEeccCCCC---
Q 024201 152 SVFSHLAWVQTDRKSGGLGDLK-YPLIADITKSISKSYGVLIPD--QGI---ALRGLFIIDKEGVIQHSTINNLAIG--- 222 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~-f~~l~D~~~~~~~~ygv~~~~--~g~---~~P~~~lID~~G~V~~~~~~~~~~~--- 222 (271)
+.+.+++|.+++ ++. |+++.|.+++++++||+.... .|+ ..|++||| ++|+|++.+.+....+
T Consensus 79 ~~~~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~ 150 (241)
T 1nm3_A 79 DTFVMNAWKEDE-------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPF 150 (241)
T ss_dssp CHHHHHHHHHHT-------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCC
T ss_pred CHHHHHHHHHhc-------CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCccc
Confidence 999999999987 565 999999999999999997533 233 46999999 9999999998876655
Q ss_pred --CCHHHHHHHHHHH
Q 024201 223 --RSVDETLRTLQAL 235 (271)
Q Consensus 223 --~~~~e~l~~l~~l 235 (271)
.+++++++.|+..
T Consensus 151 ~~~~~~~il~~l~~~ 165 (241)
T 1nm3_A 151 KVSDADTMLKYLAPQ 165 (241)
T ss_dssp SSSSHHHHHHHHCTT
T ss_pred eecCHHHHHHHhhhh
Confidence 5899999988754
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-28 Score=216.14 Aligned_cols=168 Identities=24% Similarity=0.375 Sum_probs=142.9
Q ss_pred CCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 161 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~ 161 (271)
.++|+|+|+ +.+|++++|+||+|| ++||+|||+.|||+|..|++.|++. ..+|++||+||.|+++.+++|.+
T Consensus 2 ak~p~F~l~---~~~G~~~~Lsd~~Gk-~vvl~F~p~~~tp~C~~e~~~~~~~----~~~~~~v~gis~D~~~~~~~f~~ 73 (322)
T 4eo3_A 2 ARVKHFELL---TDEGKTFTHVDLYGK-YTILFFFPKAGTSGSTREAVEFSRE----NFEKAQVVGISRDSVEALKRFKE 73 (322)
T ss_dssp CBCCCCEEE---ETTSCEEEGGGTTTS-EEEEEECSSTTSHHHHHHHHHHHHS----CCTTEEEEEEESCCHHHHHHHHH
T ss_pred CCCCCcEEE---CCCcCEEeHHHhCCC-eEEEEEECCCCCCCCHHHHHHHHHH----hhCCCEEEEEeCCCHHHHHHHHH
Confidence 378999998 788889999999998 8999999999999999999888642 33589999999999999999999
Q ss_pred HhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHhhhC
Q 024201 162 TDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQEN 241 (271)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~~~~ 241 (271)
++ +++||+++|.+++++++||+.. .|...|++||||++|+|++++ .+..+..+++|+|+.|++++. ++.
T Consensus 74 ~~-------~l~fp~l~D~~~~v~~~ygv~~--~~~~~r~tfiId~~G~i~~~~-~~v~~~~h~~~~l~~~~~~~~-~~~ 142 (322)
T 4eo3_A 74 KN-------DLKVTLLSDPEGILHEFFNVLE--NGKTVRSTFLIDRWGFVRKEW-RRVKVEGHVQEVKEALDRLIE-EDL 142 (322)
T ss_dssp HH-------TCCSEEEECTTCHHHHHTTCEE--TTEECCEEEEECTTSBEEEEE-ESCCSTTHHHHHHHHHHHHHH-HHT
T ss_pred hh-------CCceEEEEcCchHHHHhcCCCC--CCcCccEEEEECCCCEEEEEE-eCCCccccHHHHHHHHhhhch-hhh
Confidence 98 8899999999999999999973 244689999999999999997 456788899999999999974 444
Q ss_pred CCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 242 PDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 242 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
+...-++|+---..|.++ +++++.+..
T Consensus 143 -~~~~~I~~RRSiR~F~~~-~V~~e~l~~ 169 (322)
T 4eo3_A 143 -SLNKHIEWRRARRALKKD-RVPREELEL 169 (322)
T ss_dssp -SCCHHHHHCCCCCCBCCC-CCCHHHHHH
T ss_pred -HHHHHHHhhhccCCcCcc-ccCHHHHHH
Confidence 566677777777788744 577776554
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-28 Score=195.01 Aligned_cols=144 Identities=22% Similarity=0.407 Sum_probs=121.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCC-cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gk-k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+.+|+|++. +.+|+.++|++++|| +++||+||+++|||+|+.+++.|++++++|+++| +||+|+.|+++.+
T Consensus 7 ~~~G~~~P~f~l~---~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~ 82 (159)
T 2a4v_A 7 LEIGDPIPDLSLL---NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQ 82 (159)
T ss_dssp CCTTCBCCSCEEE---CTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHH
T ss_pred CCCCCCCCCeEEE---CCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHH
Confidence 7899999999998 778889999999986 3789999889999999999999999999999989 9999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC-CCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD-QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~-~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++|.+.+ +++|+++.|.++++++.||+.... .| ..|++||| ++|+|++.+.+... ..+.+++++.|+++
T Consensus 83 ~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~p~~g-~~~~~~li-~~G~i~~~~~g~~~-~~~~~~~~~~l~~~ 152 (159)
T 2a4v_A 83 KKFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLSG-SIRSHFIF-VDGKLKFKRVKISP-EVSVNDAKKEVLEV 152 (159)
T ss_dssp HHHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSSSC-BCCEEEEE-ETTEEEEEEESCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHh-------CCCceEEECCccHHHHHhCCcccccCC-ccceEEEE-cCCEEEEEEccCCc-cccHHHHHHHHHHH
Confidence 9999988 789999999999999999998432 22 35699999 99999999864321 22345555555443
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=196.34 Aligned_cols=146 Identities=20% Similarity=0.239 Sum_probs=121.4
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcE-EEEEeCCCHH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTE-ILGVSTDSVF 154 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~-vv~VS~d~~~ 154 (271)
++++|+++|+|++. .+..++.++|+++ +|| ++||+|||+.|||.|..|++.|++.+++|+++|++ |++||+|+++
T Consensus 13 ~~~vGd~aPdf~l~--~~g~~~~v~L~d~~~gk-~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~ 89 (171)
T 2xhf_A 13 PIKVGDIIPDVLVY--EDVPSKSFPIHDVFRGR-KGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPF 89 (171)
T ss_dssp CCCTTCBCCCCEEE--CSSTTCEEETHHHHTTS-EEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHH
T ss_pred cccCcCCCCCeEEe--cCCCCcEEEhHHHhCCC-eEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHH
Confidence 48999999999998 2222379999995 888 89999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHhhhcCCCCCc--ccceEEcCChHHHHHhCCccCCC----C-ccceEEEEEcCCCcEEEEEeccCCC---CCC
Q 024201 155 SHLAWVQTDRKSGGLGDL--KYPLIADITKSISKSYGVLIPDQ----G-IALRGLFIIDKEGVIQHSTINNLAI---GRS 224 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~--~f~~l~D~~~~~~~~ygv~~~~~----g-~~~P~~~lID~~G~V~~~~~~~~~~---~~~ 224 (271)
.+++|.+.+ ++ +|++++|.+.+++++||+..+.. | ...|.+|||| ||+|++.++.+... ..+
T Consensus 90 ~~~~w~~~~-------~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~~s~ 161 (171)
T 2xhf_A 90 VMAAWGKTV-------DPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPDITGLACLL 161 (171)
T ss_dssp HHHHHHHHH-------CTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTSCSHHHHHH
T ss_pred HHHHHHHhc-------CCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCCCCcccCCC
Confidence 999999998 44 89999999999999999986542 2 2578999999 99999999876543 223
Q ss_pred HHHHHHHHH
Q 024201 225 VDETLRTLQ 233 (271)
Q Consensus 225 ~~e~l~~l~ 233 (271)
.+++|+.++
T Consensus 162 a~~vL~~~~ 170 (171)
T 2xhf_A 162 SIQRQKENK 170 (171)
T ss_dssp HHHHC----
T ss_pred HHHHHHHhc
Confidence 566665553
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=192.18 Aligned_cols=145 Identities=21% Similarity=0.393 Sum_probs=127.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCC-CCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF-TFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~-Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++| |++|+.+++.|++++++| +++++|+|+.|+++..
T Consensus 18 ~~~G~~~p~f~l~---~~~G~~~~l~~~~gk-~~vl~F~-~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~~ 90 (167)
T 2jsy_A 18 VKVGDQAPDFTVL---TNSLEEKSLADMKGK-VTIISVI-PSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFAQ 90 (167)
T ss_dssp CCTTSCCCCCEEE---BTTCCEEEHHHHTTS-CEEEEEC-SCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGGT
T ss_pred cCCCCcCCceEEE---CCCCCEeeHHHhCCC-eEEEEEe-cCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHHH
Confidence 8899999999998 778889999999998 8999999 787 999999999999999999 6899999999998888
Q ss_pred HHHHHHhhhcCCCCCc-ccceEEc-CChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC-CCCCCHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDL-KYPLIAD-ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL-AIGRSVDETLRTLQ 233 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~-~f~~l~D-~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~-~~~~~~~e~l~~l~ 233 (271)
++|.+++ ++ +|+++.| .++++++.||+.....|+..|++||||++|+|++.+.+.. ....+.+++++.|+
T Consensus 91 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~ 163 (167)
T 2jsy_A 91 ARWCGAN-------GIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAK 163 (167)
T ss_dssp SCCGGGS-------SCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHH
T ss_pred HHHHHhc-------CCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHH
Confidence 8888876 67 8999999 8899999999985545555799999999999999987643 33446799999998
Q ss_pred HHH
Q 024201 234 ALQ 236 (271)
Q Consensus 234 ~l~ 236 (271)
+|.
T Consensus 164 ~ll 166 (167)
T 2jsy_A 164 ALV 166 (167)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=196.17 Aligned_cols=148 Identities=16% Similarity=0.279 Sum_probs=125.6
Q ss_pred CCCCCCCCCeEEeeecC--------CCc----eeEeccc-ccCCcEEEEEEecCCCCCChH-HHHHHHHHHHHHH-HhcC
Q 024201 78 PLVGNTAPDFAAEAVFD--------QEF----INVKLSD-YIGKKYVILFFYPLDFTFVCP-TEITAFSDRYTEF-EKLN 142 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~--------~~g----~~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~-~~l~~L~~~~~~~-~~~g 142 (271)
+++|+++|+|++.+... .+| +.++|++ ++|| ++||+|||+.|||+|. .|++.|++.+++| +++|
T Consensus 1 l~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk-~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g 79 (182)
T 1xiy_A 1 MKENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNK-KILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN 79 (182)
T ss_dssp CCTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTC-EEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC
T ss_pred CCCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCC-cEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 46899999999985311 145 7999999 6888 8999999999999999 9999999999999 9999
Q ss_pred cE-EEEEeCCCHHHHHHHHHHhhhcCCCCCc-ccceEEcCChHHHHHhCCccCC--CCc---cceEEEEEcCCCcEEEEE
Q 024201 143 TE-ILGVSTDSVFSHLAWVQTDRKSGGLGDL-KYPLIADITKSISKSYGVLIPD--QGI---ALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 143 v~-vv~VS~d~~~~~~~~~~~~~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~--~g~---~~P~~~lID~~G~V~~~~ 215 (271)
++ |++||+|+++.+++|.+.+ ++ +|++++|.+.+++++||+..+. .|+ ..|.+|||| +|+|++.+
T Consensus 80 ~~~V~gvS~D~~~~~~~~~~~~-------~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~ 151 (182)
T 1xiy_A 80 FDDIYCITNNDIYVLKSWFKSM-------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF 151 (182)
T ss_dssp CSEEEEEESSCHHHHHHHHHHT-------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred CcEEEEEeCCCHHHHHHHHHHc-------CCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEE
Confidence 95 9999999999999999988 45 6999999999999999998554 242 468999999 99999999
Q ss_pred eccCCC---------CCCHHHHHHHHHH
Q 024201 216 INNLAI---------GRSVDETLRTLQA 234 (271)
Q Consensus 216 ~~~~~~---------~~~~~e~l~~l~~ 234 (271)
+.+... ..+++++|+.|++
T Consensus 152 v~~~~~~~~~~~~~~~~~~~~vL~~L~~ 179 (182)
T 1xiy_A 152 QEKDKQHNIQTDPYDISTVNNVKEFLKN 179 (182)
T ss_dssp ECSSCCTTCSSCCCSTTSHHHHHHHHHC
T ss_pred EeCCcccccccCcccCCCHHHHHHHHHh
Confidence 876433 3689999988874
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=190.14 Aligned_cols=145 Identities=24% Similarity=0.423 Sum_probs=120.3
Q ss_pred ccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCC-CCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 73 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDF-TFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 73 ~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~-Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
.+.. +.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++| |++|+.+++.|.+++++ ++++||+|+.|
T Consensus 14 ~~~~-l~~G~~~P~f~l~---~~~G~~v~l~~~~gk-~vvl~F~-~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D 84 (175)
T 1xvq_A 14 VGEL-PAVGSPAPAFTLT---GGDLGVISSDQFRGK-SVLLNIF-PSVDTPVCATSVRTFDERAAA---SGATVLCVSKD 84 (175)
T ss_dssp SSCC-CCTTSBCCCCEEE---CTTSCEEEGGGGTTS-CEEEEEC-SCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred cCCC-CCcCCcCCCeEEE---CCCCCEEeHHHcCCC-EEEEEEE-eCCCCchHHHHHHHHHHHHhh---cCCEEEEEECC
Confidence 3444 7899999999998 778889999999998 8999999 677 99999999999999988 68999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCc-ccceEEcCChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEec-cCCCCCCHH
Q 024201 152 SVFSHLAWVQTDRKSGGLGDL-KYPLIADITKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTIN-NLAIGRSVD 226 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~-~~~~~~~~~ 226 (271)
+++..++|.+++ ++ +|+++.|.+.++++.||+.... .|...|++||||++|+|++.+.+ +......++
T Consensus 85 ~~~~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~ 157 (175)
T 1xvq_A 85 LPFAQKRFCGAE-------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYE 157 (175)
T ss_dssp CHHHHTTCC-------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHH
T ss_pred CHHHHHHHHHHc-------CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHH
Confidence 988888888876 66 8999999999999999998432 34556999999999999999874 444455788
Q ss_pred HHHHHHH
Q 024201 227 ETLRTLQ 233 (271)
Q Consensus 227 e~l~~l~ 233 (271)
++++.++
T Consensus 158 ~~l~~l~ 164 (175)
T 1xvq_A 158 AALAALG 164 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-27 Score=191.46 Aligned_cols=144 Identities=16% Similarity=0.236 Sum_probs=116.1
Q ss_pred CCCCCCCCeEEeeec-CCCc-----eeEecccc-cCCcEEEEEEecCCCCCChHHH-HHHHHHHHHHHHhcCcE-EEEEe
Q 024201 79 LVGNTAPDFAAEAVF-DQEF-----INVKLSDY-IGKKYVILFFYPLDFTFVCPTE-ITAFSDRYTEFEKLNTE-ILGVS 149 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~-~~~g-----~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~-l~~L~~~~~~~~~~gv~-vv~VS 149 (271)
.+|+++|+|+++++. +.+| +.++|+++ +|| ++||+||+++|||+|+.+ +|.|++++++|+++|++ ||+||
T Consensus 8 ~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk-~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is 86 (171)
T 2pwj_A 8 DILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDK-KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVA 86 (171)
T ss_dssp --CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTS-EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEE
T ss_pred cccCcCCCeEEecccccccCCccCcceEEHHHHhCCC-CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 357799999998552 0135 89999996 998 455555559999999999 99999999999999999 99999
Q ss_pred CCCHHHHHHHHHHhhhcCCCCC--cccceEEcCChHHHHHhCCccCCC----Cc-cceEEEEEcCCCcEEEEEeccCCCC
Q 024201 150 TDSVFSHLAWVQTDRKSGGLGD--LKYPLIADITKSISKSYGVLIPDQ----GI-ALRGLFIIDKEGVIQHSTINNLAIG 222 (271)
Q Consensus 150 ~d~~~~~~~~~~~~~~~~~~~~--~~f~~l~D~~~~~~~~ygv~~~~~----g~-~~P~~~lID~~G~V~~~~~~~~~~~ 222 (271)
.|+.+.+++|.+++ + .+|++++|.+++++++||+..... |+ ..|++|||| ||+|++.+++....+
T Consensus 87 ~d~~~~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~ 158 (171)
T 2pwj_A 87 INDPYTVNAWAEKI-------QAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEESPSD 158 (171)
T ss_dssp SSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTC
T ss_pred CCCHHHHHHHHHHh-------CCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecCCCC
Confidence 99999999999987 5 479999999999999999985431 22 357899999 999999998866543
Q ss_pred ---CCHHHHHHH
Q 024201 223 ---RSVDETLRT 231 (271)
Q Consensus 223 ---~~~~e~l~~ 231 (271)
.+++++|+.
T Consensus 159 ~~~~~~~~il~~ 170 (171)
T 2pwj_A 159 VKVSGAETILGQ 170 (171)
T ss_dssp CSSSSHHHHHHH
T ss_pred CcccCHHHHHhc
Confidence 356666654
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=179.62 Aligned_cols=134 Identities=15% Similarity=0.307 Sum_probs=119.1
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecc--cccCCcEEEEEEecCCCCCC--hHHHHHHHHHHHHHH-HhcCcEEEEEeCCC
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLS--DYIGKKYVILFFYPLDFTFV--CPTEITAFSDRYTEF-EKLNTEILGVSTDS 152 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Ls--d~~gkk~vvL~F~~~t~Cp~--C~~~l~~L~~~~~~~-~~~gv~vv~VS~d~ 152 (271)
+.+|+++|+|++. +.+|+.++|+ +++|| ++||+|| ++||++ |+.+++.|.+++++| +++|+.+|+|++|+
T Consensus 5 l~~G~~~p~f~l~---~~~g~~~~l~~~~~~gk-~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~ 79 (150)
T 3fw2_A 5 SEIGKYAPFFSLP---NAKGEKITRSSDAFKQK-SLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDV 79 (150)
T ss_dssp TSTTSBCCCCCEE---BTTCCEECTTSTTTTTS-EEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCS
T ss_pred ccCCCcCCccEeE---CCCCCEEecchhhhCCC-EEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCC
Confidence 7899999999998 6778899999 99998 9999999 899999 999999999999999 88899999999996
Q ss_pred H-HHHHHHHHHhhhcCCCCCcccceEEcC---ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHH
Q 024201 153 V-FSHLAWVQTDRKSGGLGDLKYPLIADI---TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDET 228 (271)
Q Consensus 153 ~-~~~~~~~~~~~~~~~~~~~~f~~l~D~---~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~ 228 (271)
. +..++|.+.+ +++|+++.|. +.++++.||+. .+|++||||++|+|++.+. +.+++
T Consensus 80 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l 139 (150)
T 3fw2_A 80 DKQQWKDAIKRD-------TLDWEQVCDFGGLNSEVAKQYSIY------KIPANILLSSDGKILAKNL-------RGEEL 139 (150)
T ss_dssp CHHHHHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHH
T ss_pred CHHHHHHHHHHh-------CCCceEEEcCcccchHHHHHcCCC------ccCeEEEECCCCEEEEccC-------CHHHH
Confidence 4 5667888777 7899999998 57999999999 8999999999999999963 56677
Q ss_pred HHHHHHHH
Q 024201 229 LRTLQALQ 236 (271)
Q Consensus 229 l~~l~~l~ 236 (271)
.+.|+.+.
T Consensus 140 ~~~l~~ll 147 (150)
T 3fw2_A 140 KKKIENIV 147 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=176.69 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=123.2
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-HHH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFS 155 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~~~ 155 (271)
.+.+|+++|+|++. + +|+.+++++++|| ++||+|| ++|||.|+.+++.|.+++++++++|+.+|+|++|. .+.
T Consensus 2 ~l~~G~~~P~f~l~---~-~g~~~~l~~~~gk-~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~ 75 (152)
T 3gl3_A 2 SLDKGDKAPDFALP---G-KTGVVKLSDKTGS-VVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGD 75 (152)
T ss_dssp CCCTTSBCCCCEEE---B-SSSEEEGGGGTTS-EEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHH
T ss_pred CCCCCCcCCceEee---C-CCCeEeHHHhCCC-EEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHH
Confidence 47899999999998 5 7789999999998 9999999 99999999999999999999999999999999984 566
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
..+|.+.+ +++|+++.|.+.++++.||+. .+|++||||++|+|++.+.+.. ..+.+++.+.|+++
T Consensus 76 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~--~~~~~~l~~~i~~~ 140 (152)
T 3gl3_A 76 AMKFLAQV-------PAEFTVAFDPKGQTPRLYGVK------GMPTSFLIDRNGKVLLQHVGFR--PADKEALEQQILAA 140 (152)
T ss_dssp HHHHHHHS-------CCCSEEEECTTCHHHHHTTCC------SSSEEEEECTTSBEEEEEESCC--TTTHHHHHHHHHHH
T ss_pred HHHHHHHc-------CCCCceeECCcchhHHHcCCC------CCCeEEEECCCCCEEEEEccCC--CcCHHHHHHHHHHH
Confidence 67888877 789999999999999999998 8999999999999999976542 24567888888766
Q ss_pred H
Q 024201 236 Q 236 (271)
Q Consensus 236 ~ 236 (271)
.
T Consensus 141 ~ 141 (152)
T 3gl3_A 141 L 141 (152)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-26 Score=178.49 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=114.8
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHH---HHHHHHhcCcEEEEEeCCC-HH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSD---RYTEFEKLNTEILGVSTDS-VF 154 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~---~~~~~~~~gv~vv~VS~d~-~~ 154 (271)
++|+++|+|++. +.+|+.+++++++|| ++||+|| ++||++|+.++|.|.+ ++++++++|+.+|+|++|. .+
T Consensus 2 ~~G~~~p~f~l~---~~~g~~~~l~~~~gk-~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~ 76 (142)
T 3ewl_A 2 NAGMKAADFTYV---TVHGDNSRMSRLKAQ-YTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENRE 76 (142)
T ss_dssp CTTSBCCCCEEE---CTTCCEEEGGGCCCS-EEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHH
T ss_pred CCCCcCCCCEEE---CCCCCEEEhhhcCCC-EEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHH
Confidence 579999999998 678889999999998 9999999 9999999999999998 9999999999999999984 55
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCChHHHH--HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADITKSISK--SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~--~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
..++|.+++ +++|+++.|.++.+.. .||+. .+|++||||++|+|++.. ...+++.+.|
T Consensus 77 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~-------~~~~~l~~~l 136 (142)
T 3ewl_A 77 EWATKAVYM-------PQGWIVGWNKAGDIRTRQLYDIR------ATPTIYLLDGRKRVILKD-------TSMEQLIDYL 136 (142)
T ss_dssp HHHHHHTTS-------CTTCEEEECTTCHHHHTTCSCCC------SSSEEEEECTTCBEEECS-------CCHHHHHHHH
T ss_pred HHHHHHHHc-------CCCcceeeCCccchhhHHHcCCC------CCCeEEEECCCCCEEecC-------CCHHHHHHHH
Confidence 556777666 7899999999999987 99998 899999999999999842 3567777776
Q ss_pred HHH
Q 024201 233 QAL 235 (271)
Q Consensus 233 ~~l 235 (271)
+++
T Consensus 137 ~~~ 139 (142)
T 3ewl_A 137 ATQ 139 (142)
T ss_dssp HC-
T ss_pred HHH
Confidence 654
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=177.88 Aligned_cols=135 Identities=24% Similarity=0.356 Sum_probs=117.9
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-HHH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFS 155 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~~~ 155 (271)
.+.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++||++|+.+++.|.+++++++++|+.|++|++|. .+.
T Consensus 2 ~l~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~ 76 (152)
T 2lrn_A 2 SLATGSVAPAITGI---DLKGNSVSLNDFKGK-YVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREED 76 (152)
T ss_dssp CSCTTEECCCCEEE---CSSSCEEESGGGTTS-EEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHH
T ss_pred CccCCCcCCCceeE---cCCCCEEeHHHcCCC-EEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHH
Confidence 36799999999998 677889999999998 9999999 99999999999999999999998899999999985 456
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcC---ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADI---TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~---~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.++|.+.+ +++|+++.|. +.++++.||+. .+|++||||++|+|++..+ ..+++.+.|
T Consensus 77 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~~~l 136 (152)
T 2lrn_A 77 WKKAIEED-------KSYWNQVLLQKDDVKDVLESYCIV------GFPHIILVDPEGKIVAKEL-------RGDDLYNTV 136 (152)
T ss_dssp HHHHHHHH-------TCCSEEEEECHHHHHHHHHHTTCC------SSCEEEEECTTSEEEEECC-------CTTHHHHHH
T ss_pred HHHHHHHh-------CCCCeEEecccchhHHHHHHhCCC------cCCeEEEECCCCeEEEeeC-------CHHHHHHHH
Confidence 67777776 7899999999 78999999998 8999999999999999863 224666666
Q ss_pred HHHH
Q 024201 233 QALQ 236 (271)
Q Consensus 233 ~~l~ 236 (271)
+.+.
T Consensus 137 ~~l~ 140 (152)
T 2lrn_A 137 EKFV 140 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=177.05 Aligned_cols=142 Identities=25% Similarity=0.361 Sum_probs=123.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--HHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--VFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--~~~ 155 (271)
+.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++||+.|+.+++.|.+++++++++++.+|+|++|. .+.
T Consensus 2 ~~~G~~~p~~~l~---~~~g~~~~l~~~~gk-~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~ 76 (154)
T 3kcm_A 2 SLEENPAPDFTLN---TLNGEVVKLSDLKGQ-VVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVA 76 (154)
T ss_dssp -CTTSBCCCCEEE---CTTSCEEEGGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHH
T ss_pred CCCCCCCCCeEEE---cCCCCEEehhhcCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHH
Confidence 5689999999998 677889999999998 9999999 99999999999999999999998899999999987 667
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.++|.+.+ +++|+++.|.+..+++.||+. .+|++||||++|+|++.+.+... .+.+++.+.|+.+
T Consensus 77 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~--~~~~~l~~~l~~l 141 (154)
T 3kcm_A 77 VEEFFRKT-------GFTLPVLLDADKRVGKLYGTT------GVPETFVIDRHGVILKKVVGAME--WDHPEVIAFLNNE 141 (154)
T ss_dssp HHHHHHHH-------CCCCCEEECTTCHHHHHHTCC------SBCEEEEECTTSBEEEEEESCCC--TTSHHHHHHHHTC
T ss_pred HHHHHHHc-------CCCeeEEecCchHHHHHhCCC------CCCeEEEECCCCcEEEEEcCCCc--cccHHHHHHHHHH
Confidence 78888888 789999999999999999999 89999999999999999766433 2457888888777
Q ss_pred HHhh
Q 024201 236 QYVQ 239 (271)
Q Consensus 236 ~~~~ 239 (271)
....
T Consensus 142 ~~~~ 145 (154)
T 3kcm_A 142 LSKA 145 (154)
T ss_dssp ----
T ss_pred HHHh
Confidence 5443
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=181.15 Aligned_cols=146 Identities=14% Similarity=0.250 Sum_probs=120.8
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHhcC--cEEEEEeCC--
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEKLN--TEILGVSTD-- 151 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d-- 151 (271)
.+.+|+.+|+|++. +.+|+.++|++++|| ++||+|| ++||+ +|+.+++.|.+++++|+++| ++||+|++|
T Consensus 6 ~l~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~ 80 (174)
T 1xzo_A 6 KDPLNYEVEPFTFQ---NQDGKNVSLESLKGE-VWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPE 80 (174)
T ss_dssp CSCCCEECCCCEEE---CTTSCEEETGGGTTC-CEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred cCccccccCCcEEE---cCCCCEEehhhcCCC-EEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCC
Confidence 37899999999998 678889999999998 8999999 99999 99999999999999999886 999999997
Q ss_pred --CHHHHHHHHHHhhhcCCCCCccc---ceEEcCChHHHHHhCC-----ccC-----CCCccceEEEEEcCCCcEEEEEe
Q 024201 152 --SVFSHLAWVQTDRKSGGLGDLKY---PLIADITKSISKSYGV-----LIP-----DQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~f---~~l~D~~~~~~~~ygv-----~~~-----~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
+++.+++|.+.+ +++| +++.|.+.++.+.|++ ... ....+.|++||||++|+|++.+.
T Consensus 81 ~d~~~~~~~~~~~~-------~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~ 153 (174)
T 1xzo_A 81 NDKPKQLKKFAANY-------PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYN 153 (174)
T ss_dssp TCCHHHHHHHHTTS-------CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEE
T ss_pred CCCHHHHHHHHHHc-------CCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEc
Confidence 566778888776 5566 8999988888877753 100 01237899999999999999986
Q ss_pred ccCCCCCCHHHHHHHHHHHH
Q 024201 217 NNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 217 ~~~~~~~~~~e~l~~l~~l~ 236 (271)
+... .+.+++++.|+.+.
T Consensus 154 g~~~--~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 154 GVEN--TPYDDIISDVKSAS 171 (174)
T ss_dssp SSSS--CCHHHHHHHHHHHT
T ss_pred CCCC--CCHHHHHHHHHHHH
Confidence 5432 35788888888763
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=179.78 Aligned_cols=137 Identities=19% Similarity=0.260 Sum_probs=120.2
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHH-HHHHHHHHHHHHhcCcEEEEEeC-------C
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTE-ITAFSDRYTEFEKLNTEILGVST-------D 151 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~-l~~L~~~~~~~~~~gv~vv~VS~-------d 151 (271)
+|+++|+|++.++. .+|+.+++++++|| ++||+|| ++||++|+.+ ++.|.+++++|+++++.+|+|++ +
T Consensus 2 ~g~~aP~f~l~~~~-~~g~~~~l~~~~gk-~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (158)
T 3eyt_A 2 NAMKAPELQIQQWF-NSATDLTLADLRGK-VIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAM 78 (158)
T ss_dssp CCEECCCCCEEEEE-SCSSCCCTGGGTTS-EEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGS
T ss_pred CCCcCCCceehhhh-cCCCccCHHHhCCC-EEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccC
Confidence 68999999998542 35779999999998 9999999 8999999996 99999999999988999999996 4
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccceEEcCCh-----HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHH
Q 024201 152 SVFSHLAWVQTDRKSGGLGDLKYPLIADITK-----SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVD 226 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~-----~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~ 226 (271)
+.+..++|.+++ +++|+++.|.+. ++++.||+. .+|++||||++|+|++++.+. ...+
T Consensus 79 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~ 141 (158)
T 3eyt_A 79 TPISLKAFLHEY-------RIKFPVGVDQPGDGAMPRTMAAYQMR------GTPSLLLIDKAGDLRAHHFGD----VSEL 141 (158)
T ss_dssp CHHHHHHHHHHT-------TCCSCEEEECCCSSSSCHHHHHTTCC------SSSEEEEECTTSEEEEEEESC----CCHH
T ss_pred CHHHHHHHHHHc-------CCCceEEEcCccchhhHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCC----CCHH
Confidence 677888999887 788999999987 799999998 899999999999999997654 3467
Q ss_pred HHHHHHHHHH
Q 024201 227 ETLRTLQALQ 236 (271)
Q Consensus 227 e~l~~l~~l~ 236 (271)
++.+.|+.+.
T Consensus 142 ~l~~~i~~ll 151 (158)
T 3eyt_A 142 LLGAEIATLL 151 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7888887764
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-26 Score=179.48 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=104.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-HHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~~~~ 156 (271)
+.+|+++|+|++ + .+|+.++|++++|| ++||+|| ++||++|+.++|.|.+++++|+++|++||+|+.|. .+..
T Consensus 7 l~~G~~~P~f~l-~---~~g~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~ 80 (143)
T 4fo5_A 7 VNPGDLAPRIEF-L---GNDAKASFHNQLGR-YTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIF 80 (143)
T ss_dssp SSTTSBCCCCCC---------CCCSCCSSCC-EEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHH
T ss_pred cCCcccCCceEE-c---CCCCEEEHHHhCCC-EEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHH
Confidence 789999999999 4 46679999999998 9999999 99999999999999999999998899999999995 4566
Q ss_pred HHHHHHhhhcCCCCCccc-ceEEcCC---hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 157 LAWVQTDRKSGGLGDLKY-PLIADIT---KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f-~~l~D~~---~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
+++.+++ +++| +++.|.. .++++.||+. .+|++||||++|+|+++..
T Consensus 81 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 131 (143)
T 4fo5_A 81 TETVKID-------KLDLSTQFHEGLGKESELYKKYDLR------KGFKNFLINDEGVIIAANV 131 (143)
T ss_dssp HHHHHHH-------TCCGGGEEECTTGGGSHHHHHTTGG------GCCCEEEECTTSBEEEESC
T ss_pred HHHHHHh-------CCCCceeeecccccchHHHHHcCCC------CCCcEEEECCCCEEEEccC
Confidence 7788877 7889 8888884 6899999999 8999999999999999853
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=176.40 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=111.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHH---HHHHHHhcCcEEEEEeCCCH-
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSD---RYTEFEKLNTEILGVSTDSV- 153 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~---~~~~~~~~gv~vv~VS~d~~- 153 (271)
..+|+++|+|++. +.+|+.++|++++|| ++||+|| ++||++|+.++|.|.+ ++++++++++.||+|+.|..
T Consensus 5 ~~~G~~ap~f~l~---~~~g~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~ 79 (142)
T 3eur_A 5 NRLGTKALNFTYT---LDSGVKGTLYQFPAE-YTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEEL 79 (142)
T ss_dssp TCTTSBCCCCEEE---ETTSCEEETTTCCCS-EEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCH
T ss_pred hcCCCccCCcEEE---cCCCCEeeHHHcCCC-EEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCH
Confidence 5689999999998 667889999999997 9999999 9999999999999999 99999989999999999874
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcCChH--HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKS--ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~--~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
+..+++.+++ +..|+.+.|.+.. +.+.|++. .+|++||||++|+|++... ..+++.+.
T Consensus 80 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~~~ 139 (142)
T 3eur_A 80 DEWKKHRNDF-------AKEWTNGYDKELVIKNKNLYDLR------AIPTLYLLDKNKTVLLKDA-------TLQKVEQY 139 (142)
T ss_dssp HHHHHHGGGS-------CTTSEEEECTTCHHHHTTCSCCT------TCSEEEEECTTCBEEEEEE-------CHHHHHHH
T ss_pred HHHHHHHHhc-------ccccccccCccchhhhhhhcCCC------cCCeEEEECCCCcEEecCC-------CHHHHHHH
Confidence 3334444444 6789999998865 78899998 8999999999999999864 24555555
Q ss_pred HH
Q 024201 232 LQ 233 (271)
Q Consensus 232 l~ 233 (271)
|+
T Consensus 140 l~ 141 (142)
T 3eur_A 140 LA 141 (142)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-26 Score=178.18 Aligned_cols=137 Identities=21% Similarity=0.334 Sum_probs=120.4
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-CHHH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-SVFS 155 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-~~~~ 155 (271)
++.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++||++|+.+++.|.+++++++++|+.+|+|+.| +.+.
T Consensus 4 ~~~~G~~~p~~~l~---~~~g~~~~l~~~~gk-~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~ 78 (148)
T 3hcz_A 4 PLLLGKKAPNLYMT---DTTGTYRYLYDVQAK-YTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEE 78 (148)
T ss_dssp CCCTTSBCCCCCCB---CTTSCBCCGGGCCCS-EEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHH
T ss_pred ccCCCCcCCceEEe---cCCCCEEEhHHcCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHH
Confidence 36799999999998 677889999999998 9999999 9999999999999999999999989999999998 4567
Q ss_pred HHHHHHHhhhcCCCCCcc-cceEEcCChH--HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLK-YPLIADITKS--ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~-f~~l~D~~~~--~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.++|.+.+ +++ |+++.|.+.. +++.||+. .+|++||||++|+|++...+. ...+++++.+
T Consensus 79 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~~l~~l 141 (148)
T 3hcz_A 79 WLKFIRSK-------KIGGWLNVRDSKNHTDFKITYDIY------ATPVLYVLDKNKVIIAKRIGY----ENLDDFLVQY 141 (148)
T ss_dssp HHHHHHHH-------TCTTSEEEECTTCCCCHHHHHCCC------SSCEEEEECTTCBEEEESCCG----GGHHHHHHHH
T ss_pred HHHHHHHc-------CCCCceEEeccccchhHHHhcCcC------CCCEEEEECCCCcEEEecCCH----HHHHHHHHHH
Confidence 78888887 666 9999999987 99999999 899999999999999986543 4567777666
Q ss_pred HHH
Q 024201 233 QAL 235 (271)
Q Consensus 233 ~~l 235 (271)
..+
T Consensus 142 ~~~ 144 (148)
T 3hcz_A 142 EKS 144 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-25 Score=174.95 Aligned_cols=136 Identities=22% Similarity=0.408 Sum_probs=121.1
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-HHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFSHL 157 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~~~~~ 157 (271)
++|+++|+|++. +.+|+.+++++++|| ++||+|| ++||++|+.+++.|.+++++++++++.+++|++|. .+..+
T Consensus 1 ~~G~~~p~~~l~---~~~g~~~~l~~~~gk-~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~ 75 (151)
T 2f9s_A 1 SEGSDAPNFVLE---DTNGKRIELSDLKGK-GVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVH 75 (151)
T ss_dssp -CCEECCCCEEE---CTTCCEEEGGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHH
T ss_pred CCCCcCCcceeE---cCCCCEEEHHHcCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHH
Confidence 379999999998 677889999999998 8999999 99999999999999999999998899999999864 56778
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+|.+.+ +++|+++.|.+.++++.||+. .+|++||||++|+|+..+.+. ...+++.+.|+.+.
T Consensus 76 ~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~----~~~~~l~~~l~~ll 137 (151)
T 2f9s_A 76 NFMKSY-------GVNFPVVLDTDRQVLDAYDVS------PLPTTFLINPEGKVVKVVTGT----MTESMIHDYMNLIK 137 (151)
T ss_dssp HHHHHH-------TCCSCEEEETTSHHHHHTTCC------SSCEEEEECTTSEEEEEEESC----CCHHHHHHHHHHHS
T ss_pred HHHHHc-------CCCceEEECCchHHHHhcCCC------CCCeEEEECCCCcEEEEEeCC----CCHHHHHHHHHHHH
Confidence 888887 788999999999999999998 899999999999999987643 35778888888764
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=177.77 Aligned_cols=137 Identities=12% Similarity=0.187 Sum_probs=120.5
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHH-HHHHHHHHHHHHhcCcEEEEEeC-------
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTE-ITAFSDRYTEFEKLNTEILGVST------- 150 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~-l~~L~~~~~~~~~~gv~vv~VS~------- 150 (271)
..|.++|+|++.++ .+|+.++|++++|| ++||+|| ++||++|..+ ++.|.+++++|+++|+.+|+|++
T Consensus 4 ~~g~~~p~~~~~~~--~~g~~~~l~~~~gk-~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~ 79 (160)
T 3lor_A 4 LDNAPLLELDVQEW--VNHEGLSNEDLRGK-VVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDV 79 (160)
T ss_dssp CTTCCBCCCCEEEE--SSSCCCCHHHHTTS-EEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGG
T ss_pred cCCCcCCCcccccc--cCCCccCHHHhCCC-EEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEecccccccc
Confidence 36999999999842 45679999999998 9999999 8999999995 99999999999988999999998
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcccceEEcCChH------HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCC
Q 024201 151 DSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS------ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRS 224 (271)
Q Consensus 151 d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~------~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~ 224 (271)
++.+..++|.+.+ +++|+++.|.+.. +++.||+. .+|++||||++|+|++++.+. .+
T Consensus 80 ~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~ 142 (160)
T 3lor_A 80 MTPEALKVFIDEF-------GIKFPVAVDMPREGQRIPSTMKKYRLE------GTPSIILADRKGRIRQVQFGQ----VD 142 (160)
T ss_dssp SCHHHHHHHHHHT-------TCCSCEEEECCCTTCSSCHHHHHTTCC------SSSEEEEECTTSBEEEEEESC----CC
T ss_pred CCHHHHHHHHHHc-------CCCCcEEECCccccchhhhHHHhcccC------ccceEEEECCCCcEEEEecCc----CC
Confidence 5778888999887 7889999999988 99999998 899999999999999997654 34
Q ss_pred HHHHHHHHHHHH
Q 024201 225 VDETLRTLQALQ 236 (271)
Q Consensus 225 ~~e~l~~l~~l~ 236 (271)
.+++.+.|+.+.
T Consensus 143 ~~~l~~~i~~ll 154 (160)
T 3lor_A 143 DFVLGLLLGSLL 154 (160)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777877664
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=199.23 Aligned_cols=169 Identities=18% Similarity=0.252 Sum_probs=140.5
Q ss_pred CCCCCCCCCeE-----EeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-
Q 024201 78 PLVGNTAPDFA-----AEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD- 151 (271)
Q Consensus 78 ~~~G~~~Pdf~-----l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d- 151 (271)
+.+|+++|+|+ +. +.+|+.++|++++|| ++||+|| ++||++|+.++|.|.+++++|+++++.||+|++|
T Consensus 51 l~vG~~aPdF~~~~~wL~---d~dG~~vsLsdl~GK-~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~ 125 (352)
T 2hyx_A 51 LESCGTAPDLKGITGWLN---TPGNKPIDLKSLRGK-VVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPE 125 (352)
T ss_dssp CCCCCBCCCCCSCCEEES---SGGGCCCCGGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCS
T ss_pred cCCCCcCCCccccccccC---CCCCCEEcHHHhCCC-EEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCc
Confidence 78999999999 65 778889999999998 9999999 8999999999999999999999889999999985
Q ss_pred -----CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHH
Q 024201 152 -----SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVD 226 (271)
Q Consensus 152 -----~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~ 226 (271)
+.+..++|++++ +++|+++.|.+.++++.|++. .+|++||||++|+|++.+.+. ...+
T Consensus 126 ~~~~d~~~~~~~~~~~~-------~l~fpv~~D~~~~l~~~ygV~------~~Pt~~lID~~G~Iv~~~~G~----~~~~ 188 (352)
T 2hyx_A 126 YAFEKVPGNVAKGAANL-------GISYPIALDNNYATWTNYRNR------YWPAEYLIDATGTVRHIKFGE----GDYN 188 (352)
T ss_dssp SGGGGCHHHHHHHHHHH-------TCCSCEEECTTSHHHHHTTCC------EESEEEEECTTSBEEEEEESB----CCHH
T ss_pred ccccCCHHHHHHHHHHc-------CCCccEEeCCcHHHHHHcCCC------ccCEEEEEeCCCeEEEEEcCC----CCHH
Confidence 466778888887 789999999999999999998 899999999999999997654 3467
Q ss_pred HHHHHHHHHHHhhhCCCcccCCCCCCCCCCCCCC-chhhHHHhh
Q 024201 227 ETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPD-PKLSKEYFA 269 (271)
Q Consensus 227 e~l~~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~ 269 (271)
++.+.|+.+.. +.+++...|+.....+...... ...+++|++
T Consensus 189 ~l~~~I~~lL~-e~~~~~~lpap~~~~~~~~~~~~~~spE~~~g 231 (352)
T 2hyx_A 189 VTETLVRQLLN-DAKPGVKLPQPSSTTTPDLTPRAALTPETYFG 231 (352)
T ss_dssp HHHHHHHHHHH-HHSTTCCCCSCGGGTSCCCCCCSCSCCCEECS
T ss_pred HHHHHHHHHHh-hccCCCCCCCCccccccccCccccCCCccccc
Confidence 88888887763 3445667777765553332222 455677765
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=171.87 Aligned_cols=138 Identities=20% Similarity=0.329 Sum_probs=122.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--CCHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--DSVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d~~~~ 155 (271)
..+|+++|+|++. +.+|+.+++++++|| ++||+|| ++||+.|+.+++.|.+++++++++++.+++|+. |+.+.
T Consensus 2 ~~~G~~~p~~~l~---~~~g~~~~l~~~~gk-~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~ 76 (153)
T 2l5o_A 2 SLDSKTAPAFSLP---DLHGKTVSNADLQGK-VTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIES 76 (153)
T ss_dssp --CCTTCCSCEEE---CTTSCEEEHHHHTTC-EEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHH
T ss_pred CCCCCCCCCcEee---cCCCCCccHHHhCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHH
Confidence 4589999999998 677889999999998 8999999 899999999999999999999988999999995 66778
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.++|.+.+ +++|+++.|.+.++++.||+. .+|++||||++|+|+..+.+. .+.+++.+.|+.+
T Consensus 77 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~l 139 (153)
T 2l5o_A 77 VRQYVKDY-------GLPFTVMYDADKAVGQAFGTQ------VYPTSVLIGKKGEILKTYVGE----PDFGKLYQEIDTA 139 (153)
T ss_dssp HHHHHHHT-------TCCSEEEECSSCHHHHHHTCC------SSSEEEEECSSSCCCEEEESS----CCHHHHHHHHHHH
T ss_pred HHHHHHHc-------CCCceEEcCchHHHHHHcCCC------ccCeEEEECCCCcEEEEEcCC----CCHHHHHHHHHHH
Confidence 88898887 788999999999999999998 899999999999999887543 4678888888877
Q ss_pred HH
Q 024201 236 QY 237 (271)
Q Consensus 236 ~~ 237 (271)
..
T Consensus 140 l~ 141 (153)
T 2l5o_A 140 WR 141 (153)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=178.72 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=120.8
Q ss_pred CCCCCCCCCeEEeeecCC--CceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCc------EEEEEe
Q 024201 78 PLVGNTAPDFAAEAVFDQ--EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNT------EILGVS 149 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~--~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv------~vv~VS 149 (271)
+.+|+++|+|++. +. +|+.++|++++|| ++||+|| ++||++|+.+++.|.+++++|+++|+ .||+|+
T Consensus 31 ~~~g~~~p~f~l~---~~~~~g~~~~l~~~~gk-~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~ 105 (183)
T 3lwa_A 31 EADRQQLPDIGGD---SLMEEGTQINLSDFENQ-VVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGIN 105 (183)
T ss_dssp GGGCCCCCCCEEE---BSSSTTCEEEGGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEE
T ss_pred cccCCCCCceecc---ccccCCcEecHHHhCCC-EEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEE
Confidence 5679999999998 55 7889999999998 9999999 89999999999999999999999999 999999
Q ss_pred CCC--HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHH
Q 024201 150 TDS--VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDE 227 (271)
Q Consensus 150 ~d~--~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e 227 (271)
.|. .+..++|.+++ +++|+++.|.+..+.+.|+.... ..+|++||||++|+|++.+.+. ...++
T Consensus 106 ~d~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~g~----~~~~~ 171 (183)
T 3lwa_A 106 VRDYSRDIAQDFVTDN-------GLDYPSIYDPPFMTAASLGGVPA---SVIPTTIVLDKQHRPAAVFLRE----VTSKD 171 (183)
T ss_dssp CSCCCHHHHHHHHHHT-------TCCSCEEECTTCGGGGGTTTCCT---TCCSEEEEECTTSCEEEEECSC----CCHHH
T ss_pred CCCCCHHHHHHHHHHc-------CCCccEEECCcchHHHHhccCCC---CCCCeEEEECCCCcEEEEEcCC----CCHHH
Confidence 987 77788898887 78999999999999999973211 1789999999999999987543 35778
Q ss_pred HHHHHHHHH
Q 024201 228 TLRTLQALQ 236 (271)
Q Consensus 228 ~l~~l~~l~ 236 (271)
+.+.|+.+.
T Consensus 172 l~~~l~~ll 180 (183)
T 3lwa_A 172 VLDVALPLV 180 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=171.16 Aligned_cols=133 Identities=21% Similarity=0.343 Sum_probs=118.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecc--cccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHH-HhcCcEEEEEeCCC-H
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLS--DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF-EKLNTEILGVSTDS-V 153 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Ls--d~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~-~~~gv~vv~VS~d~-~ 153 (271)
+.+|+++|+|++. +.+|+.++++ +++|| ++||+|| ++||++|+.+++.|.++++++ +++|+.+++|++|. .
T Consensus 5 ~~~g~~~p~~~l~---~~~g~~~~l~~~~~~gk-~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~ 79 (148)
T 3fkf_A 5 VTVGKSAPYFSLP---NEKGEKLSRSAERFRNR-YLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDR 79 (148)
T ss_dssp CCTTSBCCCCCEE---BTTSCEECTTSTTTTTS-EEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCH
T ss_pred ccCCCcCCCeEee---CCCCCEEeccccccCCc-EEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCH
Confidence 7899999999998 6678899999 99998 9999999 999999999999999999999 88899999999986 4
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcC---ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADI---TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~---~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
+..++|.+.+ +++|+++.|. +..+++.||+. .+|++||||++|+|++... +.+++.+
T Consensus 80 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~~ 139 (148)
T 3fkf_A 80 EAWETAIKKD-------TLSWDQVCDFTGLSSETAKQYAIL------TLPTNILLSPTGKILARDI-------QGEALTG 139 (148)
T ss_dssp HHHHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHHHH
T ss_pred HHHHHHHHHc-------CCCceEEEccCCcchHHHHhcCCC------CcCEEEEECCCCeEEEecC-------CHHHHHH
Confidence 4667777776 7899999998 67999999999 8999999999999999853 5677777
Q ss_pred HHHHH
Q 024201 231 TLQAL 235 (271)
Q Consensus 231 ~l~~l 235 (271)
.|+.+
T Consensus 140 ~l~~l 144 (148)
T 3fkf_A 140 KLKEL 144 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=177.98 Aligned_cols=143 Identities=16% Similarity=0.274 Sum_probs=122.4
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH--HH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV--FS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~--~~ 155 (271)
+.+|+.+|+|++. +.+|+.++|++++|| ++||+|| ++||++|+.+++.|.+++++|++++++||+|+.|.. +.
T Consensus 34 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~ 108 (186)
T 1jfu_A 34 ASAPLKLPDLAFE---DADGKPKKLSDFRGK-TLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEK 108 (186)
T ss_dssp CCSCCBCCCCEEE---CTTSCEEEGGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTH
T ss_pred ccCCCcCCCcEeE---cCCCCEeeHHHcCCC-EEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHH
Confidence 6789999999998 678889999999998 9999999 999999999999999999999988999999999864 56
Q ss_pred HHHHHHHhhhcCCCCCc-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDL-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.++|.+++ ++ .|+++.|.+..+.+.|++.... ..+|++||||++|+|++.+.+.. ..+.+++++.|+.
T Consensus 109 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~--~~~P~~~lid~~G~i~~~~~g~~--~~~~~~l~~~l~~ 177 (186)
T 1jfu_A 109 PKTFLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRA--LGMPTSVLVDPQGCEIATIAGPA--EWASEDALKLIRA 177 (186)
T ss_dssp HHHHHHHT-------TCCTTCCEECTTCHHHHHHHTTTCC--SSSSEEEEECTTSBEEEEEESCC--CTTSHHHHHHHHH
T ss_pred HHHHHHHc-------CCCCCceEECCcchHHHHhcccccc--CCCCEEEEECCCCCEEEEEecCC--ccCHHHHHHHHHH
Confidence 78888887 55 5899999999999999985321 25899999999999999976542 2245778888877
Q ss_pred HH
Q 024201 235 LQ 236 (271)
Q Consensus 235 l~ 236 (271)
+.
T Consensus 178 ll 179 (186)
T 1jfu_A 178 AT 179 (186)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=178.10 Aligned_cols=135 Identities=19% Similarity=0.314 Sum_probs=113.7
Q ss_pred CcCCCCCCCCCCeEEeeecCCCc--eeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC-C
Q 024201 75 EIPPLVGNTAPDFAAEAVFDQEF--INVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST-D 151 (271)
Q Consensus 75 ~~~~~~G~~~Pdf~l~~~~~~~g--~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~-d 151 (271)
...+.+|+++|+|++.+ .+| +.+++++++|| ++||+|| ++|||+|+.+++.|.+++++ |+.||+|++ |
T Consensus 27 ~~~~~~G~~~P~f~l~~---~~g~~~~~~l~~~~gk-~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d 97 (176)
T 3kh7_A 27 LPSALIGKPFPAFDLPS---VQDPARRLTEADLKGK-PALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGINYKD 97 (176)
T ss_dssp STTTTTTSBCCCCEEEB---SSCTTSEEEGGGGCSS-CEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEEEESC
T ss_pred ccccccCCcCCCcEecc---cCCCCceecHHHhCCC-EEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCC
Confidence 34478999999999984 444 79999999998 8999999 99999999999999998876 799999995 6
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 152 SVFSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
+.+..++|.+.+ +++|+ ++.|.+.++++.||+. .+|++||||++|+|++.+.+.. +.+++.+
T Consensus 98 ~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~ 160 (176)
T 3kh7_A 98 DNAAAIKWLNEL-------HNPYLLSISDADGTLGLDLGVY------GAPETYLIDKQGIIRHKIVGVV----DQKVWRE 160 (176)
T ss_dssp CHHHHHHHHHHT-------TCCCSEEEEETTCHHHHHHTCC------SSCEEEEECTTCBEEEEEESCC----CHHHHHH
T ss_pred CHHHHHHHHHHc-------CCCCceEEECCcchHHHHcCCC------CCCeEEEECCCCeEEEEEcCCC----CHHHHHH
Confidence 677778888887 67887 5889999999999999 8999999999999999976543 3455555
Q ss_pred HHHHH
Q 024201 231 TLQAL 235 (271)
Q Consensus 231 ~l~~l 235 (271)
.|+.+
T Consensus 161 ~l~~~ 165 (176)
T 3kh7_A 161 QLAPL 165 (176)
T ss_dssp HTHHH
T ss_pred HHHHH
Confidence 55443
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-25 Score=183.97 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=113.8
Q ss_pred CCCCCCC--CCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCC-hHHHHHHHHHHHHHHHhc---CcEEEEEeCC
Q 024201 78 PLVGNTA--PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFV-CPTEITAFSDRYTEFEKL---NTEILGVSTD 151 (271)
Q Consensus 78 ~~~G~~~--Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~-C~~~l~~L~~~~~~~~~~---gv~vv~VS~d 151 (271)
..+|+++ |+|++. +.+|+.+++++++|| ++||+|| ++|||. |+.+++.|.++++++.++ +++||+||+|
T Consensus 13 ~~~g~~~~~p~f~l~---d~~G~~v~l~~~~Gk-~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D 87 (200)
T 2b7k_A 13 RGYGKPSLGGPFHLE---DMYGNEFTEKNLLGK-FSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD 87 (200)
T ss_dssp ---CCCCCCCCCEEE---ETTSCEEEGGGGTTS-CEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC
T ss_pred hccCCCCcCCCEEEE---cCCCCEEeHHHcCCC-EEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECC
Confidence 5678886 999998 677889999999998 9999999 999997 999999999999999864 8999999998
Q ss_pred ----CHHHHHHHHHHhhhcCCCCCcccceEEcC---ChHHHHHhCCccCC-----CC-----ccceEEEEEcCCCcEEEE
Q 024201 152 ----SVFSHLAWVQTDRKSGGLGDLKYPLIADI---TKSISKSYGVLIPD-----QG-----IALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 152 ----~~~~~~~~~~~~~~~~~~~~~~f~~l~D~---~~~~~~~ygv~~~~-----~g-----~~~P~~~lID~~G~V~~~ 214 (271)
+++.+++|++.+ +.+|+.+.+. ...+++.||+.... .| .+.|++||||++|+|+..
T Consensus 88 ~~~d~~~~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~ 160 (200)
T 2b7k_A 88 PARDSPAVLKEYLSDF-------HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA 160 (200)
T ss_dssp TTTCCHHHHHHHHTTS-------CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred CCCCCHHHHHHHHHHc-------CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence 467778888776 6678877643 47889999997311 01 256789999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHhhhCCCcccCCCCC
Q 024201 215 TINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWK 251 (271)
Q Consensus 215 ~~~~~~~~~~~~e~l~~l~~l~~~~~~~~~~~p~~~~ 251 (271)
+.+........+++.+.|+.++.. +. .+.|+..|-
T Consensus 161 ~~g~~~~~~~~~~i~~~l~~l~~~-~~-~~~~~~~~~ 195 (200)
T 2b7k_A 161 LGRNYDEKTGVDKIVEHVKSYVPA-EQ-RAKQKEAWY 195 (200)
T ss_dssp ECTTCCTTHHHHHHHHHHHHCCCC-------------
T ss_pred eCCCCCHHHHHHHHHHHHHHhhhh-hh-cchhHHHHH
Confidence 765444444455666666655432 22 567899994
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-25 Score=175.98 Aligned_cols=137 Identities=21% Similarity=0.396 Sum_probs=121.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++||+.|+.+++.|.++++++++.++.+|+|+.|. ...
T Consensus 15 ~~~G~~~p~f~l~---~~~g~~~~l~~~~gk-~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~~~ 87 (158)
T 3hdc_A 15 VRTGALAPNFKLP---TLSGENKSLAQYRGK-IVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--RFP 87 (158)
T ss_dssp CCTTSBCCCCEEE---CTTSCEEESGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--SCC
T ss_pred cCCCCcCCCceeE---cCCCCEEehHHhCCC-EEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--HHH
Confidence 7899999999998 677889999999998 9999999 99999999999999999999998899999999998 556
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+|.+.+ +++|+++.|.+.++.+.|++. .+|++||||++|+|++.+.+... .+.+++++.+.+.+
T Consensus 88 ~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~~--~~~~~~~~~~~~~~ 151 (158)
T 3hdc_A 88 EKYRRA-------PVSFNFLSDATGQVQQRYGAN------RLPDTFIVDRKGIIRQRVTGGIE--WDAPKVVSYLKSLE 151 (158)
T ss_dssp GGGGGC-------CCSCEEEECTTSHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCC--TTSHHHHHHHHTTC
T ss_pred HHHHHc-------CCCceEEECchHHHHHHhCCC------CcceEEEEcCCCCEEEEEeCCCc--cchHHHHHHHHhhc
Confidence 666665 789999999999999999999 89999999999999999876533 34577777776654
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=175.36 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=109.5
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
+++|+.+|+|++. +.+|+.+++++++|| ++||+|| ++|||+|+.+++.|++++++|+++|++||+|++|
T Consensus 5 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~ 79 (169)
T 2v1m_A 5 HKSWNSIYEFTVK---DINGVDVSLEKYRGH-VCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQE 79 (169)
T ss_dssp --CCCSGGGCEEE---BTTSCEEEGGGGTTS-EEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred ccCCcccccceee---cCCCCCccHHHcCCC-EEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCC
Confidence 5689999999998 677889999999998 9999999 8999999999999999999999999999999986
Q ss_pred --CHHHHHHH-HHHhhhcCCCCCcccceEE--cCChHHHH-Hh--------CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 152 --SVFSHLAW-VQTDRKSGGLGDLKYPLIA--DITKSISK-SY--------GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 152 --~~~~~~~~-~~~~~~~~~~~~~~f~~l~--D~~~~~~~-~y--------gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
+.+.+++| .+.+ +++|+++. |.++..+. .| |+.... -.++|++||||++|+|++++.+
T Consensus 80 ~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~-i~~~P~~~lid~~G~i~~~~~g 151 (169)
T 2v1m_A 80 PWAEAEIKKFVTEKY-------GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN-IKWNFSKFLVDRQGQPVKRYSP 151 (169)
T ss_dssp CSCHHHHHHHHHHHH-------CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCS-CCSTTCEEEECTTSCEEEEECT
T ss_pred CCCHHHHHHHHHHhc-------CCCCceEEEEeecCccccHHHHHHHhhcCCccCCc-ccccceEEEECCCCCEEEEcCC
Confidence 35677888 4777 78899986 66554332 23 533100 0046899999999999999765
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 024201 218 NLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 218 ~~~~~~~~~e~l~~l~~l 235 (271)
... .+++.+.|+.+
T Consensus 152 ~~~----~~~l~~~i~~l 165 (169)
T 2v1m_A 152 TTA----PYDIEGDIMEL 165 (169)
T ss_dssp TSC----GGGGHHHHHHH
T ss_pred CCC----HHHHHHHHHHH
Confidence 432 34556666554
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-25 Score=180.36 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=108.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
+++|+++|+|++. +.+|+.+++++++|| ++||+|| ++|||+|+.++|.|++++++|+++|++||+|++|
T Consensus 23 ~~~g~~~p~f~l~---~~~G~~~~l~~~~Gk-~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e 97 (181)
T 2p31_A 23 MQQEQDFYDFKAV---NIRGKLVSLEKYRGS-VSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQE 97 (181)
T ss_dssp ----CCGGGCEEE---BTTSCEEEGGGGTTS-EEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred CCcCCccCceEee---cCCCCEecHHHcCCC-EEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCC
Confidence 7799999999998 677889999999998 9999999 9999999999999999999999999999999986
Q ss_pred --CHHHHHHHHHH-hhhcCCCCCcccceEEc--CChHHHH---HhCCccCCCCccce-------EEEEEcCCCcEEEEEe
Q 024201 152 --SVFSHLAWVQT-DRKSGGLGDLKYPLIAD--ITKSISK---SYGVLIPDQGIALR-------GLFIIDKEGVIQHSTI 216 (271)
Q Consensus 152 --~~~~~~~~~~~-~~~~~~~~~~~f~~l~D--~~~~~~~---~ygv~~~~~g~~~P-------~~~lID~~G~V~~~~~ 216 (271)
+.+..++|.++ + +++|+++.| .++.... .|++. .+| ++||||++|+|++.+.
T Consensus 98 ~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~g~~~~~~~~~~~~------~~P~~~~~~~~~~lid~~G~i~~~~~ 164 (181)
T 2p31_A 98 PDSNKEIESFARRTY-------SVSFPMFSKIAVTGTGAHPAFKYLAQ------TSGKEPTWNFWKYLVAPDGKVVGAWD 164 (181)
T ss_dssp CSCHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTSCHHHHHHHH------HHSCCCCSTTCEEEECTTSCEEEEEC
T ss_pred CCCHHHHHHHHHhhc-------CCCceeEeecccCCccchhhhhhhhh------cCCCccccceeEEEEcCCCCEEEEeC
Confidence 46777888887 6 778999864 4433222 34444 566 8999999999999975
Q ss_pred ccCCCCCCHHHHHHHHHHH
Q 024201 217 NNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 217 ~~~~~~~~~~e~l~~l~~l 235 (271)
+. .+.+++.+.|+++
T Consensus 165 g~----~~~~~l~~~i~~l 179 (181)
T 2p31_A 165 PT----VSVEEVRPQITAL 179 (181)
T ss_dssp TT----SCHHHHHHHHHTT
T ss_pred CC----CCHHHHHHHHHHH
Confidence 43 2456777777654
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=174.71 Aligned_cols=132 Identities=19% Similarity=0.299 Sum_probs=110.5
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
...|+++|+|++. +.+|+.++|++++|| ++||+|| ++|||+|+.+++.|.+++++|+++|++||+|+.|+..+
T Consensus 9 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~-- 81 (152)
T 2lrt_A 9 KIKEASIIDIQLK---DLKGNTRSLTDLKGK-VVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEH-- 81 (152)
T ss_dssp SSCTTCSCCCCEE---BTTSCEECTTTGGGS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHH--
T ss_pred hccCCCCCCeEEE---cCCCCEEeHHHhCCC-EEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHH--
Confidence 4579999999998 677889999999998 9999999 89999999999999999999999999999999997542
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChH---HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKS---ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~---~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.|.+.. . +++|+++.|.++. +++.||+. .+|++||||++|+|++.+.+. .+.++.+..+
T Consensus 82 ~~~~~~-~-----~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~e~~~~~~ 143 (152)
T 2lrt_A 82 FWKTSA-D-----NLPWVCVRDANGAYSSYISLYNVT------NLPSVFLVNRNNELSARGENI----KDLDEAIKKL 143 (152)
T ss_dssp HHHHHH-T-----TCSSEEEECSSGGGCHHHHHHTCC------SCSEEEEEETTTEEEEETTTC----SCHHHHHHHH
T ss_pred HHHHHH-h-----CCCceEEECCCCcchHHHHHcCcc------cCceEEEECCCCeEEEecCCH----HHHHHHHHHH
Confidence 222221 1 4689999999986 99999998 899999999999999986542 4455555443
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=169.46 Aligned_cols=142 Identities=15% Similarity=0.265 Sum_probs=119.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-HHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~~~~ 156 (271)
+.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++|||.|+.+++.|.+++++++++|+.+|+|+.|. ....
T Consensus 8 ~~~g~~~p~~~l~---~~~g~~~~l~~~~gk-~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~ 82 (165)
T 3or5_A 8 DARPTPAPSFSGV---TVDGKPFSSASLKGK-AYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNV 82 (165)
T ss_dssp CCCCCBCCCCEEE---CTTSCEEEGGGGTTC-EEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHH
T ss_pred hcCCCCCCCceee---CCCCCEechhHcCCC-EEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHH
Confidence 6789999999998 677889999999998 9999999 99999999999999999999999899999999986 6677
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++|.+++ +++|+++.|.+ ++.+.|+.........+|++||||++|+|+..+.+. ...+++.+.|+.+.
T Consensus 83 ~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~~l 150 (165)
T 3or5_A 83 KNYMKTQ-------GIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGP----RSKADFDRIVKMAL 150 (165)
T ss_dssp HHHHHHH-------TCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSC----CCHHHHHHHHHHHH
T ss_pred HHHHHHc-------CCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCC----CCHHHHHHHHHHHH
Confidence 8888887 78999999865 899999432111111799999999999999987543 35678888887764
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=179.09 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=110.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
+++|+.+|+|++. +.+|+.++|++++|| ++||+|| ++|||+|+.+++.|.+++++|+++|++||+|++|
T Consensus 21 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e 95 (183)
T 2obi_A 21 WRCARSMHEFSAK---DIDGHMVNLDKYRGF-VCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQE 95 (183)
T ss_dssp GGGCCSGGGCEEE---BTTSCEEEGGGGTTS-EEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred CcccCcccceEEE---cCCCCEeeHHHcCCC-EEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCC
Confidence 7799999999998 677889999999998 9999999 8999999999999999999999999999999986
Q ss_pred --CHHHHHHHHHHhhhcCCCCCcccceEE--cCChHHH----HHh-------CCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 152 --SVFSHLAWVQTDRKSGGLGDLKYPLIA--DITKSIS----KSY-------GVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~f~~l~--D~~~~~~----~~y-------gv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
+.+..++|.+.+ +++|+++. |.++..+ +.+ |+... .--++|++||||++|+|++++.
T Consensus 96 ~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~~~ 167 (183)
T 2obi_A 96 PGSNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKRYG 167 (183)
T ss_dssp CSCHHHHHHHHHTT-------TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSS-SCCSTTCEEEECTTSCEEEEEC
T ss_pred CCCHHHHHHHHHHc-------CCCceEEeeeccCCcchhHHHHHhhccCCCCCcccc-cccccceEEEECCCCCEEEEeC
Confidence 467778888876 78899987 6655433 222 33200 0014699999999999999975
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 024201 217 NNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 217 ~~~~~~~~~~e~l~~l~~ 234 (271)
+.. ..+++.+.|+.
T Consensus 168 g~~----~~~~l~~~i~~ 181 (183)
T 2obi_A 168 PME----EPLVIEKDLPH 181 (183)
T ss_dssp TTS----CTHHHHTTSGG
T ss_pred CCC----CHHHHHHHHHH
Confidence 432 33555555443
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=176.02 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=111.8
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-------
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------- 151 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------- 151 (271)
.+|+.+|+|++. +.+|+.+++++++|| ++||+|| ++|||+|+.++|.|++++++|+++|+.||+|++|
T Consensus 13 ~~~~~~p~f~l~---d~~G~~v~l~~~~Gk-~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~ 87 (180)
T 3kij_A 13 PKINSFYAFEVK---DAKGRTVSLEKYKGK-VSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEP 87 (180)
T ss_dssp CCCCCGGGCEEE---BTTSCEEEGGGGTTS-EEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCC
T ss_pred CCcCcccceEEe---cCCCCEecHHHcCCC-EEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCC
Confidence 479999999998 778889999999998 9999999 9999999999999999999999999999999975
Q ss_pred -CHHHHHHHHHH-hhhcCCCCCcccceEEcCC--hH---HHHHhCCccCCCCccceE----EEEEcCCCcEEEEEeccCC
Q 024201 152 -SVFSHLAWVQT-DRKSGGLGDLKYPLIADIT--KS---ISKSYGVLIPDQGIALRG----LFIIDKEGVIQHSTINNLA 220 (271)
Q Consensus 152 -~~~~~~~~~~~-~~~~~~~~~~~f~~l~D~~--~~---~~~~ygv~~~~~g~~~P~----~~lID~~G~V~~~~~~~~~ 220 (271)
+.+..++|.+. + +++|+++.+.+ +. ....|... ..| ..|+ +||||++|+|++.+.+...
T Consensus 88 d~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~-~~p~~~~~~~lid~~G~i~~~~~g~~~ 157 (180)
T 3kij_A 88 RPSKEVESFARKNY-------GVTFPIFHKIKILGSEGEPAFRFLVD--SSK-KEPRWNFWKYLVNPEGQVVKFWRPEEP 157 (180)
T ss_dssp SCHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTCCHHHHHHHH--HHT-CCCSSTTCEEEECTTSCEEEEECTTCC
T ss_pred CCHHHHHHHHHHhc-------CCCCceeeeeeccCccccHHHHHHHh--cCC-CCccccceEEEECCCCCEEEEECCCCC
Confidence 56778889888 7 78888876332 11 11111111 000 3566 9999999999999877655
Q ss_pred CCCCHHHHHHHHHHHHH
Q 024201 221 IGRSVDETLRTLQALQY 237 (271)
Q Consensus 221 ~~~~~~e~l~~l~~l~~ 237 (271)
.....+++.+.|++++.
T Consensus 158 ~~~l~~~i~~lL~~~~~ 174 (180)
T 3kij_A 158 IEVIRPDIAALVRQVII 174 (180)
T ss_dssp GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 55555666666666553
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=173.91 Aligned_cols=138 Identities=17% Similarity=0.287 Sum_probs=106.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
+.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++||++|+.+++.|++++++|+++|++||+|++|
T Consensus 6 ~~~g~~~p~f~l~---~~~g~~~~l~~~~gk-~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~ 80 (170)
T 2p5q_A 6 SKNPESVHDFTVK---DAKENDVDLSIFKGK-VLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEE 80 (170)
T ss_dssp ----CCGGGCEEE---BTTSCEEEGGGGTTS-EEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCC
T ss_pred CCCCccccceEEE---cCCCCEecHHHhCCC-EEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCC
Confidence 6789999999998 677889999999998 9999999 8999999999999999999999999999999986
Q ss_pred --CHHHHHHHHH-HhhhcCCCCCcccceE--EcCChHHH----H-----HhCCccCCCCccce---EEEEEcCCCcEEEE
Q 024201 152 --SVFSHLAWVQ-TDRKSGGLGDLKYPLI--ADITKSIS----K-----SYGVLIPDQGIALR---GLFIIDKEGVIQHS 214 (271)
Q Consensus 152 --~~~~~~~~~~-~~~~~~~~~~~~f~~l--~D~~~~~~----~-----~ygv~~~~~g~~~P---~~~lID~~G~V~~~ 214 (271)
+.+..++|.+ .+ +++|+++ .|.++.++ + .+|+. +..+| ++||||++|+|+++
T Consensus 81 ~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~----~~~~p~~~~~~lid~~G~i~~~ 149 (170)
T 2p5q_A 81 PGTNDQITDFVCTRF-------KSEFPIFDKIDVNGENASPLYRFLKLGKWGIF----GDDIQWNFAKFLVNKDGQVVDR 149 (170)
T ss_dssp CSCHHHHHHHHHHHT-------CCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTT----CSCCCSTTCEEEECTTSCEEEE
T ss_pred CCCHHHHHHHHHHhc-------CCCceeEeeeccCCCchHHHHHHHHhcCCCcc----CCcccccccEEEECCCCCEEEe
Confidence 4667788888 55 6789988 56665432 1 23551 00456 99999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHH
Q 024201 215 TINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 215 ~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.+.. +.+++.+.|+.+
T Consensus 150 ~~g~~----~~~~l~~~i~~l 166 (170)
T 2p5q_A 150 YYPTT----SPLSLERDIKQL 166 (170)
T ss_dssp ECTTS----CGGGGHHHHHHH
T ss_pred eCCCC----CHHHHHHHHHHH
Confidence 76532 234555566554
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=169.24 Aligned_cols=134 Identities=14% Similarity=0.187 Sum_probs=112.9
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~ 162 (271)
++|+|.+ ..+|+.++|++++|| ++||+|| ++|||+|+.++|.|.+++++|+++++.||+|++|+.+...+|.+.
T Consensus 4 pa~~~~~----~~~G~~~~l~~~~gk-~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~ 77 (151)
T 3raz_A 4 SADELAG----WKDNTPQSLQSLKAP-VRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQ 77 (151)
T ss_dssp ---CEEE----TTTCCEECGGGCCSS-EEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHH
T ss_pred Ccchhhc----ccCCCEecHHHhCCC-EEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHH
Confidence 3445544 267889999999998 9999999 999999999999999999999888999999999999999999998
Q ss_pred hhhcCCCCCcccceEEcCC---hHHHHHhC--CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 163 DRKSGGLGDLKYPLIADIT---KSISKSYG--VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~---~~~~~~yg--v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+ +++|+++.|.. .++++.|| +. .+|++||||++|+|++.+.+. ...+++.+.|+.+..
T Consensus 78 ~-------~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~l~~ 140 (151)
T 3raz_A 78 T-------PVSYPIWRYTGANSRNFMKTYGNTVG------VLPFTVVEAPKCGYRQTITGE----VNEKSLTDAVKLAHS 140 (151)
T ss_dssp S-------CCSSCEEEECCSCHHHHHHTTTCCSC------CSSEEEEEETTTTEEEECCSC----CCHHHHHHHHHHHHT
T ss_pred c-------CCCCceEecCccchHHHHHHhCCccC------CCCEEEEECCCCcEEEEECCC----CCHHHHHHHHHHHHH
Confidence 7 78999998774 67889999 66 799999999999999987543 356788888887754
Q ss_pred hh
Q 024201 238 VQ 239 (271)
Q Consensus 238 ~~ 239 (271)
.+
T Consensus 141 ~~ 142 (151)
T 3raz_A 141 KC 142 (151)
T ss_dssp C-
T ss_pred Hh
Confidence 43
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-24 Score=165.86 Aligned_cols=132 Identities=15% Similarity=0.317 Sum_probs=113.9
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC----CH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD----SV 153 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d----~~ 153 (271)
+.+|+.+|+|++. +.+|+.+++++ +|| ++||+|| ++||++|+.+++.|.++++++++.++.+++|++| +.
T Consensus 9 ~~~g~~~p~~~l~---~~~g~~~~l~~-~gk-~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~ 82 (145)
T 3erw_A 9 EKQPAVPAVFLMK---TIEGEDISIPN-KGQ-KTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQ 82 (145)
T ss_dssp ---CCSCCEEEEE---CTTSCEEEESC-TTS-EEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCH
T ss_pred ccCCCcCCCceee---cCCCCEEeHHH-CCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCH
Confidence 6789999999998 66788999999 888 9999999 9999999999999999999998779999999996 56
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
+..++|.+.+ +++|+++.|.+.++++.|++. .+|++||||++|+|+..+.+. ...+++.+.|
T Consensus 83 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l 144 (145)
T 3erw_A 83 QVVEDFIKAN-------KLTFPIVLDSKGELMKEYHII------TIPTSFLLNEKGEIEKTKIGP----MTAEQLKEWT 144 (145)
T ss_dssp HHHHHHHHHT-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCCEEEEEESC----CCHHHHHHHH
T ss_pred HHHHHHHHHc-------CCceeEEEcCchhHHHhcCcC------ccCeEEEEcCCCcEEEEEcCC----cCHHHHHHhh
Confidence 6777888776 789999999999999999999 899999999999999987653 3455665554
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=174.08 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=116.4
Q ss_pred CCCCCCC-CeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHh--cCcEEEEEeCC---
Q 024201 79 LVGNTAP-DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEK--LNTEILGVSTD--- 151 (271)
Q Consensus 79 ~~G~~~P-df~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~--~gv~vv~VS~d--- 151 (271)
.+|+++| +|++. +.+|+.++|++++|| ++||+|| ++||| .|+.+++.|+++++++++ .++++|+||+|
T Consensus 2 ~~G~~~P~~f~l~---d~~G~~v~l~~~~Gk-~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d 76 (170)
T 3me7_A 2 SLGTYVPGDITLV---DSYGNEFQLKNLKGK-PIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKD 76 (170)
T ss_dssp CTTCBCCTTCEEE---ETTCCEEEGGGGTTS-CEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTC
T ss_pred CCCCcCCCCeEEE---cCCcCEEchHHhCCC-EEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCC
Confidence 5899999 99998 678889999999998 8999999 89998 699999999999999975 46999999987
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccceEE--c--CChHHHHHhCCccCC--C-CccceEEEEEcCCCcEEEEEeccCCCCCC
Q 024201 152 SVFSHLAWVQTDRKSGGLGDLKYPLIA--D--ITKSISKSYGVLIPD--Q-GIALRGLFIIDKEGVIQHSTINNLAIGRS 224 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~f~~l~--D--~~~~~~~~ygv~~~~--~-g~~~P~~~lID~~G~V~~~~~~~~~~~~~ 224 (271)
+++.+++|.+++ +.....|+++. | ...+++++||+.... . ..+.|++||||++|+|+..+.+. ..+
T Consensus 77 ~~~~~~~~~~~~----~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~---~~~ 149 (170)
T 3me7_A 77 TLEDIKRFQKEY----GIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGV---NYN 149 (170)
T ss_dssp CHHHHHHHHHHT----TCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESS---SCC
T ss_pred CHHHHHHHHHHc----CCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCC---CCC
Confidence 456667777776 33334565543 2 337889998876421 1 13678999999999999987543 345
Q ss_pred HHHHHHHHHHHHH
Q 024201 225 VDETLRTLQALQY 237 (271)
Q Consensus 225 ~~e~l~~l~~l~~ 237 (271)
.+++++.|+++..
T Consensus 150 ~~~i~~~l~~~~~ 162 (170)
T 3me7_A 150 YLEFVNALRLARG 162 (170)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc
Confidence 8999999887753
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=178.07 Aligned_cols=140 Identities=16% Similarity=0.095 Sum_probs=108.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
+.+|+.+|+|++. +.+|+.++|++++|| ++||+|| ++|||+|+.++|.|++++++|+++|++||+|++|
T Consensus 23 ~~~g~~~p~f~l~---~~~G~~v~l~~~~Gk-~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~ 97 (185)
T 2gs3_A 23 MRCARSMHEFSAK---DIDGHMVNLDKYRGF-VCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQE 97 (185)
T ss_dssp GGGCCCGGGCEEE---BTTSCEEEGGGGTTS-EEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCC
T ss_pred ccCCCCcCCceeE---cCCCCEeeHHHcCCC-EEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCC
Confidence 6689999999998 677889999999998 9999999 9999999999999999999999999999999986
Q ss_pred --CHHHHHHHHHHhhhcCCCCCcccceEE--cCChH----HHHHh-------CCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 152 --SVFSHLAWVQTDRKSGGLGDLKYPLIA--DITKS----ISKSY-------GVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~f~~l~--D~~~~----~~~~y-------gv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
+.+..++|.+++ +++|+++. |.+++ +.+.+ |+... .--++|++||||++|+|++++.
T Consensus 98 ~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~~~ 169 (185)
T 2gs3_A 98 PGSNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKRYG 169 (185)
T ss_dssp CSCHHHHHHHHHHT-------TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSS-SCCSSCCEEEECTTSCEEEEEC
T ss_pred CCCHHHHHHHHHHc-------CCCCeeeeeeccCChhhhHHHHHHHhhcccccccCC-cccccceEEEECCCCCEEEeeC
Confidence 356678888877 78899987 44443 33333 32200 0014689999999999999976
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 024201 217 NNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 217 ~~~~~~~~~~e~l~~l~~ 234 (271)
+... .+++.+.|+.
T Consensus 170 g~~~----~~~l~~~i~~ 183 (185)
T 2gs3_A 170 PMEE----PLVIEKDLPH 183 (185)
T ss_dssp TTSC----GGGGGGGHHH
T ss_pred CCCC----HHHHHHHHHH
Confidence 5322 3444444443
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=177.83 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=112.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
+..|+.+|+|++. +.+|+.++|++++|| ++||+|| ++|||+|+.+++.|++++++|+++|++||+|++|
T Consensus 22 ~~~~~~~p~f~l~---~~~G~~~~l~~~~Gk-~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~ 96 (190)
T 2vup_A 22 MSAASSIFDFEVL---DADHKPYNLVQHKGS-PLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQE 96 (190)
T ss_dssp --CCCSGGGSCCB---BTTSSBCCGGGGTTS-CEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCC
T ss_pred CCCCCcccCeEEE---cCCCCEEEHHHcCCC-EEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCC
Confidence 6789999999998 677889999999998 9999999 8999999999999999999999999999999998
Q ss_pred --CHHHHHHHH-HHhhhcCCCCCcccceEE--cCChHHH---------HHhCCccCCCCccce------EEEEEcCCCcE
Q 024201 152 --SVFSHLAWV-QTDRKSGGLGDLKYPLIA--DITKSIS---------KSYGVLIPDQGIALR------GLFIIDKEGVI 211 (271)
Q Consensus 152 --~~~~~~~~~-~~~~~~~~~~~~~f~~l~--D~~~~~~---------~~ygv~~~~~g~~~P------~~~lID~~G~V 211 (271)
+.+..++|. +.+ +++|+++. |.++.++ +.|++. .+| ++||||++|+|
T Consensus 97 ~~~~~~~~~~~~~~~-------~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~------~~P~i~~~~~~~lid~~G~i 163 (190)
T 2vup_A 97 PGNEEEIKEFVCTKF-------KAEFPIMAKINVNGENAHPLYEYMKKTKPGIL------KTKAIKWNFTSFLIDRDGVP 163 (190)
T ss_dssp CSCHHHHHHHHHHHH-------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGG------GCCSCCSTTCEEEECTTSCE
T ss_pred CCCHHHHHHHHHHhc-------CCCeEEEeecccCcccccHHHHHHHhhcCCcC------CCccccccceEEEECCCCcE
Confidence 567788898 777 77899986 5554432 224665 566 99999999999
Q ss_pred EEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 212 QHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 212 ~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++.+.+. ...+++.+.|+.+.
T Consensus 164 ~~~~~g~----~~~~~l~~~i~~ll 184 (190)
T 2vup_A 164 VERFSPG----ASVKDIEKKLIPLL 184 (190)
T ss_dssp EEEECTT----CCHHHHHHHHHHHH
T ss_pred EEEECCC----CCHHHHHHHHHHHH
Confidence 9997543 34577777777664
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=168.37 Aligned_cols=132 Identities=15% Similarity=0.226 Sum_probs=112.3
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCC-hHHHHHHHHHHHHHHHh----cCcEEEEEeCCC----H
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFV-CPTEITAFSDRYTEFEK----LNTEILGVSTDS----V 153 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~-C~~~l~~L~~~~~~~~~----~gv~vv~VS~d~----~ 153 (271)
.+|+|++. +.+|+.++|++++|| ++||+|| ++|||. |+.+++.|+++++++++ .++++|+|++|+ +
T Consensus 2 ~ap~f~l~---~~~G~~~~l~~~~gk-~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~ 76 (164)
T 2ggt_A 2 LGGPFSLT---THTGERKTDKDYLGQ-WLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTK 76 (164)
T ss_dssp CCCCCEEE---ETTSCEEEGGGGTTC-EEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCH
T ss_pred CCCCeEEE---eCCCCEEeHHHcCCC-EEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCH
Confidence 47999998 678889999999998 9999999 899998 99999999999999987 489999999986 5
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEE---cCChHHHHHhCCccCCCCccce---------------EEEEEcCCCcEEEEE
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIA---DITKSISKSYGVLIPDQGIALR---------------GLFIIDKEGVIQHST 215 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~---D~~~~~~~~ygv~~~~~g~~~P---------------~~~lID~~G~V~~~~ 215 (271)
+.+++|.+.+ +.+|+++. |...++++.||+. ..| ++||||++|+|++.+
T Consensus 77 ~~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~~v~------~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 143 (164)
T 2ggt_A 77 EAIANYVKEF-------SPKLVGLTGTREEVDQVARAYRVY------YSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYF 143 (164)
T ss_dssp HHHHHHHHTT-------CSSCEEEECCHHHHHHHHHTTTCC------EEEEEECTTSCEEEEECCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHc-------CCCeEEEeCCHHHHHHHHHhcCeE------EEecCCCCCCCeeEeccceEEEECCCCeEEEEe
Confidence 6678888876 67899885 4456799999998 555 899999999999997
Q ss_pred eccCCCCCCHHHHHHHHHHHH
Q 024201 216 INNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 216 ~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+. .+.+++.+.|+.+.
T Consensus 144 ~g~----~~~~~l~~~l~~ll 160 (164)
T 2ggt_A 144 GQN----KRKGEIAASIATHM 160 (164)
T ss_dssp ETT----CCHHHHHHHHHHHH
T ss_pred CCC----CCHHHHHHHHHHHH
Confidence 543 35688888888764
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=169.83 Aligned_cols=146 Identities=16% Similarity=0.234 Sum_probs=112.3
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHhcC--cEEEEEeCCC----
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEKLN--TEILGVSTDS---- 152 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~---- 152 (271)
+|.++|+|+|. +.+|++++|++|+|| ++||+|| ++||| .|+.+++.|.+++++++++| |++|+||+|+
T Consensus 8 ~~~~~PdF~L~---d~~G~~v~l~d~~Gk-~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dt 82 (170)
T 4hde_A 8 LNWDLETFQFT---NQDGKPFGTKDLKGK-VWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDK 82 (170)
T ss_dssp CCBCCCCCEEE---CTTSCEEEHHHHTTS-CEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred CCCcCCCcEEE---CCCCCEEeHHHhCCC-EEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCccccc
Confidence 68999999998 889999999999998 9999999 89998 79999999999999998654 8899999864
Q ss_pred HHHHHHHHHHhhhcCCCCCcccceEEcCChH-HH----HHhCCccCC--CC--ccceEEEEEcCCCcEEEEEeccCCCCC
Q 024201 153 VFSHLAWVQTDRKSGGLGDLKYPLIADITKS-IS----KSYGVLIPD--QG--IALRGLFIIDKEGVIQHSTINNLAIGR 223 (271)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~-~~----~~ygv~~~~--~g--~~~P~~~lID~~G~V~~~~~~~~~~~~ 223 (271)
++.+++|++.+ +.....|.++.+.+.+ +. ..|+..... .+ .|.+++||||++|+|+..+.+. ...
T Consensus 83 p~~l~~y~~~~----~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~--~~~ 156 (170)
T 4hde_A 83 PENLKAFIQKF----TEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGI--SNT 156 (170)
T ss_dssp HHHHHHHHTTT----CSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESS--SSC
T ss_pred HHHHHHHHHHc----CCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCC--CCC
Confidence 55666676665 4445577788776532 22 335544322 11 3678999999999999886542 234
Q ss_pred CHHHHHHHHHHHH
Q 024201 224 SVDETLRTLQALQ 236 (271)
Q Consensus 224 ~~~e~l~~l~~l~ 236 (271)
..+++++.|+.|.
T Consensus 157 ~~~~l~~~ik~Ll 169 (170)
T 4hde_A 157 PYEDIIRDMKRLA 169 (170)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 5788888888763
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=166.64 Aligned_cols=138 Identities=9% Similarity=0.159 Sum_probs=118.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
+.+|+++|+|++... +.+|+.+++++++|| ++||+|| ++||+.|+.+++.|.+++++++++ +.+++|++|
T Consensus 1 l~~g~~~P~f~~~~~-~~~g~~~~~~~~~gk-~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~ 76 (148)
T 2b5x_A 1 MKLRQPMPELTGEKA-WLNGEVTREQLIGEK-PTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDL 76 (148)
T ss_dssp CCTTCBCCCCCCCSE-EESCCCCHHHHTTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTS
T ss_pred CCCCCCCCCCccccc-cccCcccchhhcCCC-EEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCcccc
Confidence 468999999998311 456779999999998 8999999 899999999999999999999876 999999987
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 152 SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
+.+..++|.+.+ +++|+++.|.+.++++.||+. .+|+++|||++|+|++...+. ...+++.+.
T Consensus 77 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~ 139 (148)
T 2b5x_A 77 DPGKIKETAAEH-------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGG----SGMKMLEKR 139 (148)
T ss_dssp SHHHHHHHHHHT-------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESC----STTHHHHHH
T ss_pred CHHHHHHHHHHc-------CCCcceEECCchhHHHHhCCC------CCCEEEEECCCCcEEEEecCC----CCHHHHHHH
Confidence 467778888887 789999999999999999998 899999999999999987653 245677777
Q ss_pred HHHHH
Q 024201 232 LQALQ 236 (271)
Q Consensus 232 l~~l~ 236 (271)
|+.+.
T Consensus 140 l~~~l 144 (148)
T 2b5x_A 140 VNRVL 144 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=176.70 Aligned_cols=148 Identities=12% Similarity=0.059 Sum_probs=106.2
Q ss_pred CCCCCCCCCeEEeeecCCC-ceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-----
Q 024201 78 PLVGNTAPDFAAEAVFDQE-FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD----- 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~-g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d----- 151 (271)
-..++.+|+|++. +.+ |+.++|++++|| ++||+|| ++|||+|+.++|.|++++++|+++|++||+|++|
T Consensus 20 ~~~~~~~p~f~l~---~~~~G~~v~l~~~~Gk-~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~ 94 (208)
T 2f8a_A 20 FQSMQSVYAFSAR---PLAGGEPVSLGSLRGK-VLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 94 (208)
T ss_dssp --CCCCGGGCEEC---BTTCSSCEEGGGGTTS-EEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTT
T ss_pred hhhcCccCceEee---eCCCCCCccHHHcCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCccccc
Confidence 3468899999998 566 889999999998 9999999 9999999999999999999999999999999986
Q ss_pred ---CHHHHHHHHHHhhhcCCCCCcccceEEcCC--hH----HHH----HhCCc---------------cC---CCCc-cc
Q 024201 152 ---SVFSHLAWVQTDRKSGGLGDLKYPLIADIT--KS----ISK----SYGVL---------------IP---DQGI-AL 199 (271)
Q Consensus 152 ---~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~--~~----~~~----~ygv~---------------~~---~~g~-~~ 199 (271)
+.+.+++|++..... ...+++||++.|.+ ++ +.+ .++.. .. ..++ ++
T Consensus 95 e~d~~~~i~~f~~~~~~~-~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 173 (208)
T 2f8a_A 95 ENAKNEEILNSLKYVRPG-GGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWN 173 (208)
T ss_dssp TCSCHHHHHHHHHHTSSC-TTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCST
T ss_pred CCCCHHHHHHHHHhcccc-cccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccC
Confidence 346678888721000 00277899986533 22 222 22210 00 0011 46
Q ss_pred eEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 200 P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|++||||++|+|++++.+... .+++.+.|+.+
T Consensus 174 p~tflID~~G~i~~~~~g~~~----~~~l~~~I~~l 205 (208)
T 2f8a_A 174 FEKFLVGPDGVPLRRYSRRFQ----TIDIEPDIEAL 205 (208)
T ss_dssp TCEEEECTTSCEEEEECTTSC----GGGGHHHHHHH
T ss_pred ceEEEEcCCCcEEEEeCCCCC----HHHHHHHHHHH
Confidence 999999999999999865433 34555555554
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=165.24 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=113.0
Q ss_pred CCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCC-hHHHHHHHHHHHHHHHh----cCcEEEEEeCC----CHHH
Q 024201 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFV-CPTEITAFSDRYTEFEK----LNTEILGVSTD----SVFS 155 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~-C~~~l~~L~~~~~~~~~----~gv~vv~VS~d----~~~~ 155 (271)
|+|++. +.+|+.+++++++|| ++||+|| ++||+. |+.+++.|++++++|++ .+++||+|++| +++.
T Consensus 7 p~f~l~---~~~G~~~~l~~~~gk-~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~ 81 (171)
T 2rli_A 7 GDFHLL---DHRGRARCKADFRGQ-WVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEA 81 (171)
T ss_dssp SCCEEE---ETTSCEEETTTTTTS-EEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHH
T ss_pred CCeEEE---eCCCCEEeHHHhCCC-EEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHH
Confidence 999998 677889999999998 9999999 999997 99999999999999975 58999999997 4667
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCC---hHHHHHhCCccCCC-----C----ccceEEEEEcCCCcEEEEEeccCCCCC
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADIT---KSISKSYGVLIPDQ-----G----IALRGLFIIDKEGVIQHSTINNLAIGR 223 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~---~~~~~~ygv~~~~~-----g----~~~P~~~lID~~G~V~~~~~~~~~~~~ 223 (271)
+++|.+.+ +.+|+++.|.. ..+++.||+..... + .+.|++||||++|+|++.+.+. .
T Consensus 82 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~----~ 150 (171)
T 2rli_A 82 MARYVQDF-------HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRS----R 150 (171)
T ss_dssp HHHHHHTT-------CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESS----C
T ss_pred HHHHHHHc-------CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCC----C
Confidence 78888877 67899998753 57899999972110 0 1345999999999999997543 3
Q ss_pred CHHHHHHHHHHHHHh
Q 024201 224 SVDETLRTLQALQYV 238 (271)
Q Consensus 224 ~~~e~l~~l~~l~~~ 238 (271)
+.+++++.|+.+...
T Consensus 151 ~~~~l~~~l~~ll~~ 165 (171)
T 2rli_A 151 SAEQISDSVRRHMAA 165 (171)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 578888888877543
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=175.95 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=107.6
Q ss_pred CCCCCCCCeEEeeecCCC-ceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 79 LVGNTAPDFAAEAVFDQE-FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~-g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
..+..+|+|++. +.+ |+.++|++|+|| ++||+|| ++|||+|+ ++|.|++++++|+++|++||+|++|
T Consensus 30 ~~~~~~pdF~l~---d~~~G~~v~Lsd~~GK-vvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e 103 (215)
T 2i3y_A 30 DEKGTIYDYEAI---ALNKNEYVSFKQYVGK-HILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQE 103 (215)
T ss_dssp CCCCCGGGCEEE---BSSSSCEEEGGGGTTS-EEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred cccCCcCCcEee---eCCCCCEEcHHHhCCC-EEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCC
Confidence 457789999998 667 889999999999 8999999 99999999 9999999999999999999999975
Q ss_pred --CHHHHHHHHH------HhhhcCCCCCcccceEEcCC--hH----HHHHh----C----Ccc--------C--CCCc-c
Q 024201 152 --SVFSHLAWVQ------TDRKSGGLGDLKYPLIADIT--KS----ISKSY----G----VLI--------P--DQGI-A 198 (271)
Q Consensus 152 --~~~~~~~~~~------~~~~~~~~~~~~f~~l~D~~--~~----~~~~y----g----v~~--------~--~~g~-~ 198 (271)
+.+.+++|++ ++ +++||++.|.+ +. +.+.+ . +.. + ..++ +
T Consensus 104 ~~~~~~i~~f~~~~~~~~~~-------~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~ 176 (215)
T 2i3y_A 104 PGDNKEILPGLKYVRPGGGF-------VPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRW 176 (215)
T ss_dssp CSCHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCS
T ss_pred CCCHHHHHHHHHhccchhcc-------CccceeEeeeccCCcccchHHHHHHhhCccccccccccccccccccccccccc
Confidence 3466788887 55 78999997643 22 22211 0 100 0 0011 3
Q ss_pred ceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 199 ~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.|++||||++|+|+.++.+. ...+++.+.|+.+.
T Consensus 177 npttfLID~~G~vv~~~~g~----~~~~~l~~~I~~ll 210 (215)
T 2i3y_A 177 NFEKFLVGPDGIPVMRWSHR----ATVSSVKTDILAYL 210 (215)
T ss_dssp TTCEEEECTTSCEEEEECTT----SCHHHHHHHHHHHG
T ss_pred CceEEEECCCCeEEEEeCCC----CCHHHHHHHHHHHH
Confidence 48999999999999997543 23577777777764
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-24 Score=179.13 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=107.1
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-----
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS----- 152 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~----- 152 (271)
+..+.++|+|++. +.+|+.++|++++|| ++||+|| ++|||+|+.++|.|++++++|+++|++||+|++|.
T Consensus 20 ~~~~~~~p~f~l~---d~~G~~~~l~~~~Gk-~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e 94 (187)
T 3dwv_A 20 MSAASSIFDFEVL---DADHKPYNLVQHKGS-PLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQE 94 (187)
T ss_dssp CTTCCSGGGSCCB---BTTSCBCCGGGGTTS-CEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCS
T ss_pred hcCCCccCCeEEE---cCCCCEeeHHHhCCC-EEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCC
Confidence 5678999999998 778889999999998 8999999 99999999999999999999999999999999873
Q ss_pred ---HHHHHHHHHHhhhcCCCCCcccceEE--cCChHHH------------HHhCCccCCCCccce---EEEEEcCCCcEE
Q 024201 153 ---VFSHLAWVQTDRKSGGLGDLKYPLIA--DITKSIS------------KSYGVLIPDQGIALR---GLFIIDKEGVIQ 212 (271)
Q Consensus 153 ---~~~~~~~~~~~~~~~~~~~~~f~~l~--D~~~~~~------------~~ygv~~~~~g~~~P---~~~lID~~G~V~ 212 (271)
.+..++|.+.. .+++|+++. |.++..+ ..||+. .+| ++||||++|+|+
T Consensus 95 ~~~~~~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~------~iP~~~~~~liD~~G~i~ 162 (187)
T 3dwv_A 95 PGNEEEIKEFVCTK------FKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK------AIKWNFTSFLIDRDGVPV 162 (187)
T ss_dssp SSBTTHHHHSCCBC------CCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSS------SCCSTTCEEEECTTSCEE
T ss_pred CCCHHHHHHHHHhc------cCCCCceeeccccCCcchhHHHHHHHhhcCCccCCC------ccccceeEEEECCCCCEE
Confidence 34445554421 267899986 4444322 122333 567 999999999999
Q ss_pred EEEeccCCCCCCHHHHHHHHHHH
Q 024201 213 HSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 213 ~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.+.+. ...+++.+.|+.+
T Consensus 163 ~~~~g~----~~~~~l~~~i~~l 181 (187)
T 3dwv_A 163 ERFSPG----ASVKDIEEKLIPL 181 (187)
T ss_dssp EEECTT----CCHHHHHHHHHHH
T ss_pred EEECCC----CCHHHHHHHHHHH
Confidence 997543 3456777777665
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=165.81 Aligned_cols=138 Identities=20% Similarity=0.306 Sum_probs=117.4
Q ss_pred CCCCCCCCC-CeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH-H
Q 024201 77 PPLVGNTAP-DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV-F 154 (271)
Q Consensus 77 ~~~~G~~~P-df~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~-~ 154 (271)
.+.+|+++| +|++. +.+|+.+++++++|| ++||+|| ++||+.|+.+++.|.+++++++++++.+++|+.|.. +
T Consensus 2 ~l~~G~~~p~~f~l~---~~~g~~~~l~~~~gk-~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~ 76 (152)
T 2lja_A 2 SLRSGNPSAASFSYP---DINGKTVSLADLKGK-YIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKK 76 (152)
T ss_dssp CTTTTCCCSSSCEEE---ETTTEEEESTTTTTS-EEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHH
T ss_pred ccccCCCCCcccEee---cCCCCEeeHHHcCCC-EEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHH
Confidence 377999999 99998 677889999999998 8999999 899999999999999999999988999999999864 4
Q ss_pred HHHHHHHHhhhcCCCCCcc-cceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLK-YPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~-f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
..++|.+.+ ++. ++++.|.+.++.+.||+. .+|++||||++|+|++...+. .+.+++.+.|+
T Consensus 77 ~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~ 139 (152)
T 2lja_A 77 AWENMVTKD-------QLKGIQLHMGTDRTFMDAYLIN------GIPRFILLDRDGKIISANMTR----PSDPKTAEKFN 139 (152)
T ss_dssp HHHHHHHHH-------TCCSEEEECSSCTHHHHHTTCC------SSCCEEEECTTSCEEESSCCC----TTCHHHHHHHH
T ss_pred HHHHHHHhc-------CCCCceeecCcchhHHHHcCcC------CCCEEEEECCCCeEEEccCCC----CCHHHHHHHHH
Confidence 567777776 444 467778889999999998 899999999999999985332 34577777777
Q ss_pred HHH
Q 024201 234 ALQ 236 (271)
Q Consensus 234 ~l~ 236 (271)
.+.
T Consensus 140 ~~~ 142 (152)
T 2lja_A 140 ELL 142 (152)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=169.56 Aligned_cols=132 Identities=13% Similarity=0.187 Sum_probs=116.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
+.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++||++|+.+++.|.+++++++ ++.||+|++|
T Consensus 11 ~~~g~~~p~~~l~---~~~g~~~~l~~~~gk-~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~ 83 (165)
T 3ha9_A 11 EEVLEREASFSLT---TIDGEVISLNNVGGD-VVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALK 83 (165)
T ss_dssp HHHHHHHHCCCEE---BTTSCEECGGGCCSS-EEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHH
T ss_pred ccccCcCCCCEee---cCCCCEeeHHHhCCC-EEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEEeccccccc
Confidence 4589999999998 677889999999998 9999999 9999999999999999999998 8999999997
Q ss_pred -------------CHHHHHHHHHHhhhcCCCCCc-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 152 -------------SVFSHLAWVQTDRKSGGLGDL-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 152 -------------~~~~~~~~~~~~~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
+.+..++|.+.+ ++ +|+++.| +.++.+.|++. .+|++||||++|+|++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d-~~~~~~~~~v~------~~P~~~lid~~G~i~~--~g 147 (165)
T 3ha9_A 84 ALGLNKPGYPPPDTPEMFRKFIANY-------GDPSWIMVMD-DGSLVEKFNVR------SIDYIVIMDKSSNVLY--AG 147 (165)
T ss_dssp HHTCCSTTSCCCCCHHHHHHHHHHH-------SCTTSEEEEC-CSHHHHHTTCC------SSSEEEEEETTCCEEE--EE
T ss_pred ccccccccCCCCCCHHHHHHHHHHc-------CCCCeeEEeC-hHHHHHHhCCC------CceEEEEEcCCCcEEE--eC
Confidence 667778888888 67 9999999 99999999999 8999999999999999 23
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 024201 218 NLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 218 ~~~~~~~~~e~l~~l~~l 235 (271)
.. .+.+++.+.|+.+
T Consensus 148 ~~---~~~~~l~~~l~~l 162 (165)
T 3ha9_A 148 TT---PSLGELESVIKSV 162 (165)
T ss_dssp ES---CCHHHHHHHHHHC
T ss_pred CC---CCHHHHHHHHHHH
Confidence 21 1567777777765
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=167.48 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=117.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC---CCHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST---DSVF 154 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~---d~~~ 154 (271)
+.+|+++|+|++. +.+|+.+++++++ | ++||+|| ++||++|+.+++.|.++++++ ++.+|+|++ ++.+
T Consensus 5 l~~g~~~p~f~l~---~~~g~~~~l~~~~-k-~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~ 75 (154)
T 3ia1_A 5 VKPGEPLPDFLLL---DPKGQPVTPATVS-K-PAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTRE 75 (154)
T ss_dssp CCSBEECCCCCEE---CTTSCEECTTTSC-S-SEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHH
T ss_pred CCCCCcCCceEEE---CCCCCEechHHcC-C-eEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHH
Confidence 7899999999998 6788899999998 6 8999999 999999999999999999999 899999999 6677
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEc---CChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIAD---ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D---~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
..++|.+.+ +++|+++.| .+.++++.||+. .+|++||||++|+|++...+. ...+++.+.
T Consensus 76 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~ 138 (154)
T 3ia1_A 76 VVLEYMKTY-------PRFIPLLASDRDRPHEVAARFKVL------GQPWTFVVDREGKVVALFAGR----AGREALLDA 138 (154)
T ss_dssp HHHHHHTTC-------TTEEECBCCSSCCHHHHHTTSSBC------SSCEEEEECTTSEEEEEEESB----CCHHHHHHH
T ss_pred HHHHHHHHc-------CCCcccccccccchHHHHHHhCCC------cccEEEEECCCCCEEEEEcCC----CCHHHHHHH
Confidence 777888776 789999998 679999999998 899999999999999997643 357788888
Q ss_pred HHHHH
Q 024201 232 LQALQ 236 (271)
Q Consensus 232 l~~l~ 236 (271)
|+.+.
T Consensus 139 l~~~~ 143 (154)
T 3ia1_A 139 LLLAG 143 (154)
T ss_dssp HHHTT
T ss_pred HHhcc
Confidence 87664
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=170.64 Aligned_cols=142 Identities=22% Similarity=0.301 Sum_probs=118.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCC-hHHHHHHHHHHHHHHHhc---CcEEEEEeCC--
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFV-CPTEITAFSDRYTEFEKL---NTEILGVSTD-- 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~-C~~~l~~L~~~~~~~~~~---gv~vv~VS~d-- 151 (271)
..+|+++|+|++. +.+| .+++++++|| ++||+|| ++||+. |+.+++.|.+++++|+++ +++||+|++|
T Consensus 10 ~~~G~~~p~f~l~---~~~g-~~~l~~~~gk-~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~ 83 (172)
T 2k6v_A 10 RLLNPKPVDFALE---GPQG-PVRLSQFQDK-VVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPE 83 (172)
T ss_dssp EEEEEEECCCEEE---CSSS-EEEGGGSTTS-EEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTT
T ss_pred cccCCCCCCeEEE---cCCC-CCcHHHhCCC-EEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCC
Confidence 3469999999998 7788 9999999998 9999999 899997 999999999999999875 7999999986
Q ss_pred --CHHHHHHHHHHhhhcCCCCCcccceEEcCC---hHHHHHhCCccCCC--------C-ccceEEEEEcCCCcEEEEEec
Q 024201 152 --SVFSHLAWVQTDRKSGGLGDLKYPLIADIT---KSISKSYGVLIPDQ--------G-IALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~---~~~~~~ygv~~~~~--------g-~~~P~~~lID~~G~V~~~~~~ 217 (271)
+++.+++|.+++ +.+|+++.|.+ .++++.||+..... + .++|++|||| +|+|++.+.+
T Consensus 84 ~d~~~~~~~~~~~~-------~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g 155 (172)
T 2k6v_A 84 RDPPEVADRYAKAF-------HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSP 155 (172)
T ss_dssp TCCHHHHHHHHHHH-------CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECH
T ss_pred CCCHHHHHHHHHHh-------CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECC
Confidence 457788899888 78999999987 68999999853311 1 2679999999 9999999765
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 024201 218 NLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 218 ~~~~~~~~~e~l~~l~~l 235 (271)
.. ..+.+++++.|+.+
T Consensus 156 ~~--~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 156 DK--AEATDRVVADLQAL 171 (172)
T ss_dssp HH--HTCHHHHHHHHHHC
T ss_pred CC--CCCHHHHHHHHHHh
Confidence 43 22677888887754
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=172.25 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=104.7
Q ss_pred CCCCCCCeEEeeecCCC-ceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-------
Q 024201 80 VGNTAPDFAAEAVFDQE-FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------- 151 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~-g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------- 151 (271)
....+|+|++. +.+ |+.++|++|+|| ++||+|| ++|||.| .++|.|++++++|+++|++||+|++|
T Consensus 13 ~~~~~pdF~l~---d~~~G~~v~Ls~~kGK-vvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~ 86 (207)
T 2r37_A 13 ISGTIYEYGAL---TIDGEEYIPFKQYAGK-YVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEP 86 (207)
T ss_dssp --CCGGGCEEE---BTTSSCEEEGGGGTTS-EEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCC
T ss_pred ccCccCCeEee---eCCCCCEEcHHHhCCC-EEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCC
Confidence 35679999998 667 889999999998 8999999 9999999 79999999999999999999999965
Q ss_pred -CHHHHHHHHH------HhhhcCCCCCcccceEEcCC--hH----HHHHh----C----Ccc--------C--CCCc-cc
Q 024201 152 -SVFSHLAWVQ------TDRKSGGLGDLKYPLIADIT--KS----ISKSY----G----VLI--------P--DQGI-AL 199 (271)
Q Consensus 152 -~~~~~~~~~~------~~~~~~~~~~~~f~~l~D~~--~~----~~~~y----g----v~~--------~--~~g~-~~ 199 (271)
+.+.+++|++ ++ +++||++.|.+ +. +...+ + +.. + ..++ +.
T Consensus 87 ~~~~~i~~f~~~~~~~~~~-------~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~ 159 (207)
T 2r37_A 87 GENSEILPTLKYVRPGGGF-------VPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWN 159 (207)
T ss_dssp SCHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCST
T ss_pred CCHHHHHHHHHhcchhhcc-------CccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCccccc
Confidence 3466788887 55 78999997643 22 22211 1 110 0 0011 45
Q ss_pred eEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 200 P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
|++||||++|+|++++.+. ...+++.+.|+.+.
T Consensus 160 ~ttflID~~G~i~~~~~g~----~~~~~l~~~I~~ll 192 (207)
T 2r37_A 160 FEKFLVGPDGIPIMRWHHR----TTVSNVKMDILSYM 192 (207)
T ss_dssp TCEEEECTTSCEEEEECTT----SCHHHHHHHHHHHH
T ss_pred ceEEEECCCCcEEEEECCC----CCHHHHHHHHHHHH
Confidence 8999999999999997543 23466666666654
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=157.18 Aligned_cols=130 Identities=25% Similarity=0.356 Sum_probs=110.1
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE------eCCCHHHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV------STDSVFSH 156 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V------S~d~~~~~ 156 (271)
++|+|++. +.+|+.+++++++|| ++||+|| ++||+.|+.+++.|.++++++ ..++.+|+| ..++....
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk-~~lv~f~-~~~C~~C~~~~~~l~~~~~~~-~~~~~~v~i~~~~~~~~~~~~~~ 74 (138)
T 4evm_A 1 EVADFELM---GVDGKTYRLSDYKGK-KVYLKFW-ASWCSICLASLPDTDEIAKEA-GDDYVVLTVVSPGHKGEQSEADF 74 (138)
T ss_dssp CCCCCEEE---BTTSCEEEGGGGTTS-EEEEEEC-CTTCHHHHHHHHHHHHHHHTC-TTTEEEEEEECTTSTTCCCHHHH
T ss_pred CCCcceeE---CCCCCEEEHHHhCCC-EEEEEEE-cCcCHHHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCCchhhHHHH
Confidence 48999998 678889999999998 8999999 999999999999999999985 457999999 33455666
Q ss_pred HHHHHHhhhcCCCCCc-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDL-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+|.+.+ ++ +|+++.|.+.++++.||+. .+|++||||++|+|++.+.+. ...+++.+.|+.+
T Consensus 75 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~l 137 (138)
T 4evm_A 75 KNWYKGL-------DYKNLPVLVDPSGKLLETYGVR------SYPTQAFIDKEGKLVKTHPGF----MEKDAILQTLKEL 137 (138)
T ss_dssp HHHHTTC-------CCTTCCEEECTTCHHHHHTTCC------SSSEEEEECTTCCEEEEEESC----CCHHHHHHHHHHC
T ss_pred HHHHhhc-------CCCCeeEEECcchHHHHHcCcc------cCCeEEEECCCCcEEEeecCC----CcHHHHHHHHHhh
Confidence 7777665 55 8999999999999999998 899999999999999987643 3467777777654
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=155.76 Aligned_cols=131 Identities=19% Similarity=0.277 Sum_probs=114.0
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-HHHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFSHLA 158 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~~~~~~ 158 (271)
+|.++|+|++. +.+|+.+++++++|| ++||+|| ++||+.|+.+++.|.+++++++ ++.+++|+.|+ .+..++
T Consensus 1 ~~~~~p~~~~~---~~~g~~~~l~~~~~k-~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~ 73 (136)
T 1zzo_A 1 TVPAQLQFSAK---TLDGHDFHGESLLGK-PAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQE 73 (136)
T ss_dssp CCCGGGCCEEE---BTTSCEEEGGGGTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHH
T ss_pred CCCCCCCcccc---cCCCCEeeHHHhCCC-eEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHH
Confidence 37789999998 667889999999998 8999999 9999999999999999999987 89999999875 667788
Q ss_pred HHHHhhhcCCCCCc-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 159 WVQTDRKSGGLGDL-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 159 ~~~~~~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|.+.+ ++ +|+++.|.+.++++.||+. .+|+++|||++|+|+ .+.+. ...+++.+.|+.+
T Consensus 74 ~~~~~-------~~~~~~~~~d~~~~~~~~~~i~------~~P~~~~id~~g~i~-~~~g~----~~~~~l~~~l~~~ 133 (136)
T 1zzo_A 74 FVNKY-------PVKTFTQLADTDGSVWANFGVT------QQPAYAFVDPHGNVD-VVRGR----MSQDELTRRVTAL 133 (136)
T ss_dssp HHHHT-------TCTTSEEEECTTCHHHHHTTCC------SSSEEEEECTTCCEE-EEESC----CCHHHHHHHHHHH
T ss_pred HHHHc-------CCCceEEEEcCCcHHHHHcCCC------CCceEEEECCCCCEE-EEecC----CCHHHHHHHHHHH
Confidence 88877 66 8999999999999999998 899999999999999 65443 3467777777655
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=156.38 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=114.0
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-HHHHHHHHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFSHLAWVQ 161 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~~~~~~~~~ 161 (271)
.+|+|++. +.+|+.+++++++|| ++||+|| ++||++|..+++.|.+++++++ ++.+++|+.|+ .+..++|.+
T Consensus 3 ~~p~~~l~---~~~g~~~~l~~~~~k-~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~ 75 (136)
T 1lu4_A 3 ERLQFTAT---TLSGAPFDGASLQGK-PAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVS 75 (136)
T ss_dssp GGGCCEEE---BTTSCEEEGGGGTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHH
T ss_pred CCCCeEee---cCCCCeecHHHhCCC-EEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHH
Confidence 58999998 677889999999998 8999999 9999999999999999999997 89999999987 777888988
Q ss_pred HhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 162 TDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+ +++|+++.|.+.++++.|++. .+|+++|||++|+|+ .+... ....+.+++.+.|+.+
T Consensus 76 ~~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~-~~~~~-~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 76 KY-------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTST-FVNNP-TAAMSQDELSGRVAAL 134 (136)
T ss_dssp HH-------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEE-EECCS-SSCCCHHHHHHHHHHC
T ss_pred Hc-------CCCceEEECCchhHHHhcCCC------CCCEEEEECCCCcEE-EEEcC-CCccCHHHHHHHHHHH
Confidence 87 789999999999999999998 899999999999999 65411 1123577888887765
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-25 Score=177.31 Aligned_cols=139 Identities=23% Similarity=0.329 Sum_probs=115.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHH-HHHHHH-hcCcEEEEEeCCCH-H
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSD-RYTEFE-KLNTEILGVSTDSV-F 154 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~-~~~~~~-~~gv~vv~VS~d~~-~ 154 (271)
+.+|+++|+|++. +.+|+.+++++++|| ++||+|| ++|||+|+.+++.|.+ ++++++ +.++.+|+|+.|.. +
T Consensus 7 l~~g~~~p~f~l~---~~~g~~~~l~~~~gk-~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~ 81 (159)
T 2ls5_A 7 VRIGEMAPDFTIT---LTDGKQVTLSSLRGK-VVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLE 81 (159)
Confidence 7799999999998 677889999999998 8999999 9999999999999998 999998 77999999999865 3
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
..++|.+.+ +++|+++.|.+.++++.||+... .+|++||||++|+|++...+. ....++++++.|+.
T Consensus 82 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~----~~P~~~lid~~G~i~~~~~g~--~~~~l~~~l~~l~~ 148 (159)
T 2ls5_A 82 KVLAFAKST-------GVTYPLGLDPGADIFAKYALRDA----GITRNVLIDREGKIVKLTRLY--NEEEFASLVQQINE 148 (159)
Confidence 456777776 78999999999999999996421 589999999999999986431 12234444444443
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=171.26 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=98.0
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-------- 151 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-------- 151 (271)
-|..+|+|+++ +.+|+.++|++++|| ++||+|| ++||+.|+ +++.|++++++|+++|+.||+|++|
T Consensus 8 ~~~~~~~f~l~---d~~G~~~~l~~~~Gk-~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d 81 (171)
T 3cmi_A 8 HMSEFYKLAPV---DKKGQPFPFDQLKGK-VVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPG 81 (171)
T ss_dssp --CGGGGCCCB---BTTSCBCCGGGGTTC-EEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC-----
T ss_pred chhheeeeEEE---cCCCCEecHHHcCCC-EEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCC
Confidence 36789999998 778889999999998 9999999 99999999 9999999999999999999999984
Q ss_pred CHHHHHHHH-HHhhhcCCCCCcccceEEcCC--hH-H---H-----HHhCCccCCCCccce------EEEEEcCCCcEEE
Q 024201 152 SVFSHLAWV-QTDRKSGGLGDLKYPLIADIT--KS-I---S-----KSYGVLIPDQGIALR------GLFIIDKEGVIQH 213 (271)
Q Consensus 152 ~~~~~~~~~-~~~~~~~~~~~~~f~~l~D~~--~~-~---~-----~~ygv~~~~~g~~~P------~~~lID~~G~V~~ 213 (271)
+.+..++|. +.+ +++|+++.|.+ +. + . +.||+. .+| ++||||++|+|++
T Consensus 82 ~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~------~~P~i~~~~~~~lid~~G~i~~ 148 (171)
T 3cmi_A 82 SDEEIAQFCQLNY-------GVTFPIMKKIDVNGGNEDPVYKFLKSQKSGML------GLRGIKWNFEKFLVDKKGKVYE 148 (171)
T ss_dssp --------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSS------SCCSCCSTTCEEEECSSSCEEE
T ss_pred CHHHHHHHHHhcc-------CCCceEEeeccCCCccchHHHHHHHhccCCcC------CCCcccccceEEEECCCCCEEE
Confidence 445667777 665 77899998643 22 1 1 346766 677 9999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHH
Q 024201 214 STINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 214 ~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+.+.. +.+++.+.|+.+
T Consensus 149 ~~~g~~----~~~~l~~~i~~l 166 (171)
T 3cmi_A 149 RYSSLT----KPSSLSETIEEL 166 (171)
T ss_dssp EECTTS----CGGGGHHHHHHH
T ss_pred EeCCCC----CHHHHHHHHHHH
Confidence 976532 334556666555
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=162.66 Aligned_cols=134 Identities=19% Similarity=0.307 Sum_probs=110.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-CHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-SVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-~~~~ 155 (271)
+.+|+++|+|++.++ +.+|+.++++++ +|| ++||+|| ++|||+|+.++|.|.+++++ ++.+++|+.| +.+.
T Consensus 22 ~~~G~~~P~f~l~~~-~~~g~~~~~~~~~~gk-~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~~ 94 (168)
T 2b1k_A 22 ALIGKPVPKFRLESL-DNPGQFYQADVLTQGK-PVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQK 94 (168)
T ss_dssp TTTTSBCCCCEEEES-SSTTCEEEGGGGCCSS-CEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHH
T ss_pred cccCCcCCCeEeecc-cCCCcEeehhHhcCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChHH
Confidence 679999999999854 226789999986 777 8999999 99999999999999988765 8999999975 4567
Q ss_pred HHHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
..+|.+.+ +++|+ ++.|.+.++++.||+. .+|++||||++|+|++.+.+.. +.+++.+.|+.
T Consensus 95 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~ 157 (168)
T 2b1k_A 95 AISWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDL----NPRVWEEEIKP 157 (168)
T ss_dssp HHHHHHHH-------CCCCSEEEEETTCHHHHHHTCC------SSSEEEEECTTSBEEEEEESCC----CHHHHHHTTHH
T ss_pred HHHHHHHc-------CCCCceeeECcchHHHHHcCcc------ccCEEEEECCCCeEEEEEeCCC----CHHHHHHHHHH
Confidence 78888887 67887 5789999999999999 8999999999999999876532 34555555544
Q ss_pred H
Q 024201 235 L 235 (271)
Q Consensus 235 l 235 (271)
+
T Consensus 158 ~ 158 (168)
T 2b1k_A 158 L 158 (168)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=158.19 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=101.5
Q ss_pred CCCCCCC-eEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCC-HHHH
Q 024201 80 VGNTAPD-FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDS-VFSH 156 (271)
Q Consensus 80 ~G~~~Pd-f~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~-~~~~ 156 (271)
+|+.+|+ |++. +.+|+.+++++++|| ++||+|| ++||++|+.++|.|.++++++++ ++++||+|++|. .+..
T Consensus 3 ~~~~~P~~f~l~---~~~g~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~ 77 (144)
T 1i5g_A 3 LKKFFPYSTNVL---KGAAADIALPSLAGK-TVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDF 77 (144)
T ss_dssp TTTSCSSCSEEE---ETTEEEEEGGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHH
T ss_pred hhhhCCCceEEE---cCCCCEecHHHcCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHH
Confidence 5889999 9998 678889999999998 8999999 89999999999999999999985 689999999985 5566
Q ss_pred HHHHHHhhhcCCCCCcccceEE-cCChHHHHHhCCccCCCCccceEEEEEc-CCCcEEEEE
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIA-DITKSISKSYGVLIPDQGIALRGLFIID-KEGVIQHST 215 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~-D~~~~~~~~ygv~~~~~g~~~P~~~lID-~~G~V~~~~ 215 (271)
++|.+++ + ...++++. |.+.++++.|++. .+|+++||| ++|+|++.+
T Consensus 78 ~~~~~~~----~--~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 78 KDYYAKM----P--WLALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp HHHHTTC----S--SEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHHhC----C--ccccccCchHHHHHHHHHcCCC------CCCEEEEEECCCCcEEecc
Confidence 6676654 1 23455554 5568999999998 899999999 999999974
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-22 Score=158.32 Aligned_cols=138 Identities=16% Similarity=0.202 Sum_probs=110.7
Q ss_pred CCCCCCCC-eEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCC-HHH
Q 024201 79 LVGNTAPD-FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDS-VFS 155 (271)
Q Consensus 79 ~~G~~~Pd-f~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~-~~~ 155 (271)
..|+.+|+ |++. +.+| .+++++++|| ++||+|| ++||++|+.+++.|.++++++++ ++++|++|++|. .+.
T Consensus 3 ~~~~~~P~~f~l~---~~~g-~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~ 76 (146)
T 1o8x_A 3 GLDKYLPGIEKLR---RGDG-EVEVKSLAGK-LVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDG 76 (146)
T ss_dssp CGGGTSTTCCEEE---ETTE-EEEGGGGTTC-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHH
T ss_pred chHhhCCCceEEE---cCCC-CCcHHHhCCC-EEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHH
Confidence 46899999 9998 7788 9999999998 8999999 89999999999999999999984 689999999985 455
Q ss_pred HHHHHHHhhhcCCCCCcccceEE-cCChHHHHHhCCccCCCCccceEEEEEc-CCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIA-DITKSISKSYGVLIPDQGIALRGLFIID-KEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~-D~~~~~~~~ygv~~~~~g~~~P~~~lID-~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.++|.+++ + ...+++.. |.+.++++.|++. .+|+++||| ++|+|++...
T Consensus 77 ~~~~~~~~----~--~~~~~~~~~d~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~~----------------- 127 (146)
T 1o8x_A 77 FAGYFAKM----P--WLAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTTRA----------------- 127 (146)
T ss_dssp HHHHHTTC----S--SEECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESCH-----------------
T ss_pred HHHHHHHC----C--ceeeccchhhHHHHHHHHhCCC------CCCEEEEEECCCCeEEEecc-----------------
Confidence 56666654 1 23555554 5568999999998 899999999 9999999741
Q ss_pred HHHHhhhCCCcccCCCCCCC
Q 024201 234 ALQYVQENPDEVCPAGWKPG 253 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~~ 253 (271)
...+.+. ...|..+|++.
T Consensus 128 -~~~~~~~-~~~~~~~w~~~ 145 (146)
T 1o8x_A 128 -RATLVKD-PEGEQFPWKDA 145 (146)
T ss_dssp -HHHHTTC-TTCTTTTCCCC
T ss_pred -hhHHhhC-CccccCCCCCC
Confidence 1122333 46688888864
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-22 Score=157.90 Aligned_cols=133 Identities=16% Similarity=0.250 Sum_probs=109.8
Q ss_pred CCCCCCCCCeEEeeecCCCc--------eeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024201 78 PLVGNTAPDFAAEAVFDQEF--------INVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVS 149 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g--------~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS 149 (271)
+.+|+.+|+|++. +.+| +.+++++++|+ ++||+|| ++||++|..+++.|.+++++ .++.+++|+
T Consensus 8 ~~~g~~~p~f~l~---~~~g~~~~~~~~~~~~l~~~~gk-~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~ 79 (156)
T 1kng_A 8 ALIGRPAPQTALP---PLEGLQADNVQVPGLDPAAFKGK-VSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGIN 79 (156)
T ss_dssp ----CBCCCCCBC---CCTTCEETTEECCCBCGGGGTTS-CEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEE
T ss_pred HHhCCCCCCceee---eccCcccccccCceechHHhCCC-EEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeEEEEEE
Confidence 6789999999998 4455 79999999998 8999999 89999999999999998876 469999999
Q ss_pred CC-CHHHHHHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHH
Q 024201 150 TD-SVFSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDE 227 (271)
Q Consensus 150 ~d-~~~~~~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e 227 (271)
.| +.+..++|.+.+ +++|+ ++.|.+.++++.||+. .+|++||||++|+|++.+.+. .+.++
T Consensus 80 ~~~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~g~----~~~~~ 142 (156)
T 1kng_A 80 YKDAADNARRFLGRY-------GNPFGRVGVDANGRASIEWGVY------GVPETFVVGREGTIVYKLVGP----ITPDN 142 (156)
T ss_dssp ESCCHHHHHHHHHHH-------CCCCSEEEEETTSHHHHHTTCC------SSCEEEEECTTSBEEEEEESC----CCHHH
T ss_pred CCCCHHHHHHHHHHc-------CCCCceeeeCchhHHHHhcCcC------ccCeEEEEcCCCCEEEEEeCC----CCHHH
Confidence 75 456778888887 78898 8889999999999999 899999999999999987543 24566
Q ss_pred HHHHHHHH
Q 024201 228 TLRTLQAL 235 (271)
Q Consensus 228 ~l~~l~~l 235 (271)
+.+.|+.+
T Consensus 143 l~~~l~~~ 150 (156)
T 1kng_A 143 LRSVLLPQ 150 (156)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-22 Score=159.31 Aligned_cols=133 Identities=12% Similarity=0.173 Sum_probs=109.1
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC------
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS------ 152 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~------ 152 (271)
.+|+.+| ++. +.+|+.+++++++|| ++||+|| ++||++|+.++|.|.+++++|+.+|++||+|++|.
T Consensus 15 ~~~~~~p--~l~---~~~g~~~~~~~~~gk-~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~ 87 (164)
T 2h30_A 15 TVPHTMS--TMK---TADNRPASVYLKKDK-PTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKK 87 (164)
T ss_dssp CHHHHHT--TCE---ETTSSBGGGGCCTTS-CEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCC
T ss_pred ccCCcCC--ccC---CCCCCEeeHHHhCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccC
Confidence 3566666 454 667889999999998 8999999 99999999999999999999998999999999853
Q ss_pred HHHHHHHHHHhhhcCCCCCcc-cceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 153 VFSHLAWVQTDRKSGGLGDLK-YPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~-f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
.....+|.+.+ ++. |++..|.+.++++.|++. .+|++||||++|+|++.+.+. .+.+++.+.
T Consensus 88 ~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~ 150 (164)
T 2h30_A 88 DGEFQKWYAGL-------NYPKLPVVTDNGGTIAQNLNIS------VYPSWALIGKDGDVQRIVKGS----INEAQALAL 150 (164)
T ss_dssp TTHHHHHHTTS-------CCTTSCEEECTTCHHHHHTTCC------SSSEEEEECTTSCEEEEEESC----CCHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCcceEEEcCchHHHHHcCCC------ccceEEEECCCCcEEEEEcCC----CCHHHHHHH
Confidence 33444554443 455 889999999999999998 899999999999999987553 356777777
Q ss_pred HHHH
Q 024201 232 LQAL 235 (271)
Q Consensus 232 l~~l 235 (271)
|+.+
T Consensus 151 i~~~ 154 (164)
T 2h30_A 151 IRNP 154 (164)
T ss_dssp HHCT
T ss_pred HHHH
Confidence 7755
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=154.39 Aligned_cols=119 Identities=19% Similarity=0.264 Sum_probs=99.0
Q ss_pred CCCCCCCCe-EEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCcEEEEEeCCC-HHH
Q 024201 79 LVGNTAPDF-AAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDS-VFS 155 (271)
Q Consensus 79 ~~G~~~Pdf-~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~-~~gv~vv~VS~d~-~~~ 155 (271)
.+|+.+|+| ++. +.+| .+++++++|| ++||+|| ++||++|+.++|.|.+++++++ ++++.+++|++|. .+.
T Consensus 3 ~~g~~~p~~~~l~---~~~g-~~~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~ 76 (144)
T 1o73_A 3 GLAKYLPGATNLL---SKSG-EVSLGSLVGK-TVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESD 76 (144)
T ss_dssp GGGGTSCTTCCBB---CTTS-CBCSGGGTTC-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHH
T ss_pred chhhhCccceEee---cCCC-cCcHHHhCCC-EEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHH
Confidence 479999997 987 7888 9999999998 8999999 8999999999999999999998 4689999999986 344
Q ss_pred HHHHHHHhhhcCCCCCcccceEE-cCChHHHHHhCCccCCCCccceEEEEEc-CCCcEEEEE
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIA-DITKSISKSYGVLIPDQGIALRGLFIID-KEGVIQHST 215 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~-D~~~~~~~~ygv~~~~~g~~~P~~~lID-~~G~V~~~~ 215 (271)
.++|.+++ + ...+++.. |.+.++++.|++. .+|+++||| ++|+|++..
T Consensus 77 ~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 77 FHDYYGKM----P--WLALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHHHTTC----S--SEECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHHHhC----C--ceEeeccchhHHHHHHHHcCCC------CCCEEEEEECCCCeEEecc
Confidence 45555543 1 23444443 4567899999998 899999999 899999874
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-22 Score=161.41 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=100.2
Q ss_pred CCCCCCCCCe-EEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCCH-H
Q 024201 78 PLVGNTAPDF-AAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSV-F 154 (271)
Q Consensus 78 ~~~G~~~Pdf-~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~~-~ 154 (271)
..+|+++|+| ++. +.+| .++|++++|| ++||+|| ++||++|+.++|.|.+++++|++ +++.||+|++|.. +
T Consensus 22 ~~vG~~~P~f~~l~---~~~g-~v~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~ 95 (165)
T 3s9f_A 22 SGVAKHLGEALKLR---KQAD-TADMDSLSGK-TVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEED 95 (165)
T ss_dssp CHHHHHHHHTSCEE---ETTE-EECSGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHH
T ss_pred hhhcccCCcceeee---cCCC-cccHHHcCCC-EEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHH
Confidence 5689999999 887 7788 9999999998 9999999 99999999999999999999986 6899999999864 4
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCC-hHHHHHhCCccCCCCccceEEEEEcCC-CcEEEEE
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADIT-KSISKSYGVLIPDQGIALRGLFIIDKE-GVIQHST 215 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~-~~~~~~ygv~~~~~g~~~P~~~lID~~-G~V~~~~ 215 (271)
..++|.+++ ....+++..+.. .++++.|++. .+|++||||++ |+|++..
T Consensus 96 ~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 96 DFNAYYAKM------PWLSIPFANRNIVEALTKKYSVE------SIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp HHHHHHTTC------SSEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHHHHhC------CCcccccCchhHHHHHHHHcCCC------CCCEEEEEeCCCCEEEecc
Confidence 445555543 123444444333 7999999998 89999999998 9999974
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-22 Score=158.41 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=98.9
Q ss_pred CCCCCeEEeeecCCCceeEeccc-ccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh--cCcEEEEEeCCC-HHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSD-YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK--LNTEILGVSTDS-VFSHL 157 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~--~gv~vv~VS~d~-~~~~~ 157 (271)
+.+|+|++. +.+|+.+++++ ++||+++||+|| ++|||+|+.++|.|.++++++++ .++.+++|++|. .+..+
T Consensus 2 ~~~p~~~l~---~~~g~~~~l~~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~ 77 (143)
T 2lus_A 2 EFIQGIKLV---KKNRCEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMF 77 (143)
Confidence 458999998 66788999999 999768999999 89999999999999999999953 589999999985 34556
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
+|.+.+ +.....+++..|...++++.||+. .+|+++|||++|+|++.+.
T Consensus 78 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 126 (143)
T 2lus_A 78 QYMMES----HGDWLAIPYRSGPASNVTAKYGIT------GIPALVIVKKDGTLISMNG 126 (143)
Confidence 676665 111223445566668899999998 8999999999999999853
|
| >4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=140.93 Aligned_cols=152 Identities=19% Similarity=0.295 Sum_probs=117.3
Q ss_pred CcCCCCCCCCC--CeEEeeec----C------CCceeEecccc--cCCcEEEEEEecCCCCCChHH-HHHHHHHHHHHH-
Q 024201 75 EIPPLVGNTAP--DFAAEAVF----D------QEFINVKLSDY--IGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEF- 138 (271)
Q Consensus 75 ~~~~~~G~~~P--df~l~~~~----~------~~g~~v~Lsd~--~gkk~vvL~F~~~t~Cp~C~~-~l~~L~~~~~~~- 138 (271)
.|...+|+++| |+++..+- + ...++++++++ +|| .|||+++|++|+|.|.. ++|.+.+.++++
T Consensus 23 ~~~~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~K-kVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~ 101 (199)
T 4h86_A 23 SMSDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENK-KVIITGAPAAFSPTCTVSHIPGYINYLDELV 101 (199)
T ss_dssp CBCTTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCS-EEEEEECSCTTCHHHHHTTHHHHHHHHHHHH
T ss_pred hhHHHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCC-eEEEEEeCCCcCCcCChhhChHHHHHHHHHH
Confidence 34467899999 57766553 1 22357888876 577 79999999999999986 699999999875
Q ss_pred HhcCc-EEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCc---cceEEEEEcCCCcEEEE
Q 024201 139 EKLNT-EILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI---ALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 139 ~~~gv-~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~---~~P~~~lID~~G~V~~~ 214 (271)
+.+|+ +|++||+|+++.+.+|.+.+... ....++++.|.+.+++++||+..+..+. ..|..+||| ||+|.+.
T Consensus 102 k~kGvd~I~ciSVND~FVm~AW~k~~~~~---~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~ 177 (199)
T 4h86_A 102 KEKEVDQVIVVTVDNPFANQAWAKSLGVK---DTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYA 177 (199)
T ss_dssp HHSCCCEEEEEESSCHHHHHHHHHHTTCC---CCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEE
T ss_pred HhcCCcEEEEEEcCCHHHHHHHHHHhccc---ccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEE
Confidence 78898 68889999999999999987322 1346889999999999999997654322 458889998 9999999
Q ss_pred EeccCC---C-CCCHHHHHHH
Q 024201 215 TINNLA---I-GRSVDETLRT 231 (271)
Q Consensus 215 ~~~~~~---~-~~~~~e~l~~ 231 (271)
++.+.. . ...++.+|+.
T Consensus 178 ~vE~~pg~~~~vS~ae~vL~~ 198 (199)
T 4h86_A 178 AKETNPGTDVTVSSVESVLAH 198 (199)
T ss_dssp EECSSTTTCCSTTSHHHHHTT
T ss_pred EEeCCCCCCCcccCHHHHHhc
Confidence 887532 1 2356777654
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=112.04 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=84.9
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~ 162 (271)
.+++++.. +.+|.........|+ ++||+|| ++||++|+...+.|.+++++++ .++.++.|+.+
T Consensus 5 ~~~~l~~~---~~~~~~~~~~~~~~k-~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~----------- 67 (126)
T 2l57_A 5 GIKQINFQ---SINVVENLEEAKEGI-PTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE----------- 67 (126)
T ss_dssp CSSCTTTT---CCSEESSTTTCCSSS-CEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT-----------
T ss_pred ccCCCCcc---ccchhHHHHHHhCCC-cEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC-----------
Confidence 45555554 333334445555666 8999999 9999999999999999999987 57999999955
Q ss_pred hhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 163 DRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.|.+.++++.|++. .+|+++++|++|+++....+. ...+++.+.|+.+
T Consensus 68 ---------------~d~~~~~~~~~~v~------~~Pt~~~~~~~G~~~~~~~G~----~~~~~l~~~l~~~ 115 (126)
T 2l57_A 68 ---------------EEKNIDLAYKYDAN------IVPTTVFLDKEGNKFYVHQGL----MRKNNIETILNSL 115 (126)
T ss_dssp ---------------SSHHHHHHHHTTCC------SSSEEEEECTTCCEEEEEESC----CCHHHHHHHHHHH
T ss_pred ---------------CCchHHHHHHcCCc------ceeEEEEECCCCCEEEEecCC----CCHHHHHHHHHHH
Confidence 12235788899998 899999999999999886542 3567788777765
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-15 Score=118.41 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=94.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
...+...++| . + .++.+.+++++|| ++||+||.++||++|+.+.|.| .++.+.+. .++.++.|..+...
T Consensus 24 ~~~~~~~~~~--~---~-~~~~~~~a~~~gk-~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~ 95 (154)
T 2ju5_A 24 RPIAAANLQW--E---S-YAEALEHSKQDHK-PIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKN 95 (154)
T ss_dssp CSSCCCCCCE--E---C-HHHHHHHHHHHCC-CEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSC
T ss_pred hhcccCCCCC--C---C-HHHHHHHHHhCCC-eEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcccc
Confidence 3456666676 3 2 3558888889998 8999999679999999999999 66655543 46888888877532
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++.+++ .|.+.++++.|++. .+|+++|||++|+++... +.. ....+++++.|+.
T Consensus 96 ----------------~~~~~~-~~~~~~l~~~~~v~------~~Pt~~~~d~~G~~~~~~-G~~--~~~~~~l~~~l~~ 149 (154)
T 2ju5_A 96 ----------------HQPEEQ-RQKNQELKAQYKVT------GFPELVFIDAEGKQLARM-GFE--PGGGAAYVSKVKS 149 (154)
T ss_dssp ----------------CCCHHH-HHHHHHHHHHTTCC------SSSEEEEECTTCCEEEEE-CCC--TTCHHHHHHHHHH
T ss_pred ----------------CCChhh-HhhHHHHHHHcCCC------CCCEEEEEcCCCCEEEEe-cCC--CCCHHHHHHHHHH
Confidence 123332 45568899999999 899999999999999986 432 3467888888876
Q ss_pred HH
Q 024201 235 LQ 236 (271)
Q Consensus 235 l~ 236 (271)
+.
T Consensus 150 ~l 151 (154)
T 2ju5_A 150 AL 151 (154)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-15 Score=119.08 Aligned_cols=118 Identities=18% Similarity=0.172 Sum_probs=87.7
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
..|..+|+|... .+.++....+++++|+ ++||+|| ++||++|+...+.+ .++.++++ ++.++.|+++...
T Consensus 5 ~~~~~~~~f~~~--~~~~~~~~~l~~~~~k-~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~- 77 (134)
T 2fwh_A 5 AQTQTHLNFTQI--KTVDELNQALVEAKGK-PVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND- 77 (134)
T ss_dssp -----CCCCEEC--CSHHHHHHHHHHHTTS-CEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC-
T ss_pred cccccCCCcEEe--cCHHHHHHHHHHhcCC-cEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCc-
Confidence 468889999732 2555556778888887 8999999 99999999999988 88888876 6999999887521
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEE--EEEeccCCCCCCHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQ--HSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~--~~~~~~~~~~~~~~e~l~~l~ 233 (271)
|...++++.||+. .+|+++|+|++|+++ .+..+. ...+++.+.|+
T Consensus 78 -----------------------~~~~~l~~~~~v~------~~Pt~~~~d~~G~~v~~~~~~G~----~~~~~l~~~l~ 124 (134)
T 2fwh_A 78 -----------------------AQDVALLKHLNVL------GLPTILFFDGQGQEHPQARVTGF----MDAETFSAHLR 124 (134)
T ss_dssp -----------------------HHHHHHHHHTTCC------SSSEEEEECTTSCBCGGGCBCSC----CCHHHHHHHHH
T ss_pred -----------------------chHHHHHHHcCCC------CCCEEEEECCCCCEeeeeeeeec----cCHHHHHHHHH
Confidence 2346788999998 899999999999998 444332 35678888877
Q ss_pred HHH
Q 024201 234 ALQ 236 (271)
Q Consensus 234 ~l~ 236 (271)
.++
T Consensus 125 ~~~ 127 (134)
T 2fwh_A 125 DRQ 127 (134)
T ss_dssp HC-
T ss_pred hcC
Confidence 664
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-13 Score=103.69 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=82.5
Q ss_pred CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcc
Q 024201 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLK 173 (271)
Q Consensus 94 ~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~ 173 (271)
+.+|..+.++++.|+ ++||+|| ++||++|+...|.|.++++++.+ ++.++.|.+|.
T Consensus 38 ~~~~~~~~l~~~~~k-~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~--------------------- 93 (141)
T 3hxs_A 38 DYENHSKEWKYLGDK-PAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDK--------------------- 93 (141)
T ss_dssp CCSSCCCCCCCCCSS-CEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTT---------------------
T ss_pred ccccchhHHHHhCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCC---------------------
Confidence 566778899999888 8999999 99999999999999999999875 58888887653
Q ss_pred cceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 174 YPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 174 f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.++++.|++. .+|+++++|++|+++ .+.+. .+.+++.+.|+.+
T Consensus 94 -------~~~~~~~~~v~------~~Pt~~~~~~~g~~~-~~~G~----~~~~~l~~~l~~~ 137 (141)
T 3hxs_A 94 -------EPELARDFGIQ------SIPTIWFVPMKGEPQ-VNMGA----LSKEQLKGYIDKV 137 (141)
T ss_dssp -------CHHHHHHTTCC------SSSEEEEECSSSCCE-EEESC----CCHHHHHHHHHHT
T ss_pred -------CHHHHHHcCCC------CcCEEEEEeCCCCEE-EEeCC----CCHHHHHHHHHHH
Confidence 34688999999 899999999999987 43332 3567787777755
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=101.81 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=77.5
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHH--HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFS--DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~--~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
....|+ ++||+|| ++||++|+...|.|. ++.+++++ ++.++.|+++. .|.
T Consensus 25 ~~~~~k-~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~ 76 (133)
T 3fk8_A 25 GKRTHK-PTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN-------------------------FDR 76 (133)
T ss_dssp HHHHTC-CEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT-------------------------TTS
T ss_pred HHhcCC-cEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc-------------------------ccc
Confidence 334577 8999999 999999999999999 89888864 69999998863 134
Q ss_pred ChHHHHHhCC---ccCCCCccceEEEEEcCCCcEEEEEeccCCC---CCCHHHHHHHHHHH
Q 024201 181 TKSISKSYGV---LIPDQGIALRGLFIIDKEGVIQHSTINNLAI---GRSVDETLRTLQAL 235 (271)
Q Consensus 181 ~~~~~~~ygv---~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~---~~~~~e~l~~l~~l 235 (271)
+.++++.|++ . .+|+++++|++|+++....+..-. ....+++.+.|+.+
T Consensus 77 ~~~l~~~~~v~~~~------~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 77 NLELSQAYGDPIQD------GIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp SHHHHHHTTCGGGG------CSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred hHHHHHHhCCccCC------ccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 5778999999 7 899999999999999996552211 23566777776655
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=101.24 Aligned_cols=107 Identities=13% Similarity=0.267 Sum_probs=80.1
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~ 159 (271)
...++|+++. .+++.++....+|+ ++||+|| ++||++|+.+.|.+.++++++++ ++.++.|..|.
T Consensus 20 ~~~~~~~~~~-----~~~~~~~~~~~~~k-~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~------- 84 (128)
T 3ul3_B 20 MFKKVPRLQQ-----NGSNIINGVNMKNT-VIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDK------- 84 (128)
T ss_dssp ------CCCC-----CCCSSSSBTTSCCS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGG-------
T ss_pred HhccCCcccc-----CCccHHHHHHccCC-EEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC-------
Confidence 4566777763 33446777777887 8999999 99999999999999999999974 68888887542
Q ss_pred HHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.++++.|++. .+|+++++ ++|+++....+. ...+++.+.|+
T Consensus 85 ---------------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~ 126 (128)
T 3ul3_B 85 ---------------------NESLARKFSVK------SLPTIILL-KNKTMLARKDHF----VSSNDLIALIK 126 (128)
T ss_dssp ---------------------CHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSC----CCHHHHHHHHT
T ss_pred ---------------------CHHHHHHcCCC------CcCEEEEE-ECCEEEEEecCC----CCHHHHHHHHH
Confidence 34789999999 89999999 799999886442 45667766654
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=99.43 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=76.1
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccc
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYP 175 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~ 175 (271)
.+.+++..|+ ++||+|| ++||++|+.+.+.+ .++.+.++ .++.++.|..+.
T Consensus 19 ~~~~~~~~~k-~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------- 72 (130)
T 2kuc_A 19 ALKRAEVEDK-LLFVDCF-TTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEK----------------------- 72 (130)
T ss_dssp HHHHHHHHSS-CEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHHH-HHSEEEEECSSS-----------------------
T ss_pred HHHHHHhcCC-eEEEEEE-CCCCccHHHHHHHhcCcHHHHHHHh-cCeEEEEEecCC-----------------------
Confidence 5666667787 8999999 99999999999998 55555544 357777776653
Q ss_pred eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 176 LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 176 ~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
|.+.++++.|++. .+|+++|+|++|+++....+. ...+++.+.|+.+.
T Consensus 73 ---~~~~~~~~~~~v~------~~Pt~~~~d~~G~~~~~~~G~----~~~~~l~~~l~~~~ 120 (130)
T 2kuc_A 73 ---GEGVELRKKYGVH------AYPTLLFINSSGEVVYRLVGA----EDAPELLKKVKLGV 120 (130)
T ss_dssp ---TTHHHHHHHTTCC------SSCEEEEECTTSCEEEEEESC----CCHHHHHHHHHHHH
T ss_pred ---cchHHHHHHcCCC------CCCEEEEECCCCcEEEEecCC----CCHHHHHHHHHHHH
Confidence 2346789999998 899999999999999886543 35677888877654
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-12 Score=93.13 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=71.4
Q ss_pred cccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 104 DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 104 d~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
+..|+ ++||+|| ++||++|+...|.|.+++++++ ++.++.|..++ .+.+
T Consensus 21 ~~~~~-~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------~~~~ 69 (111)
T 2pu9_C 21 AAGDK-PVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKT 69 (111)
T ss_dssp TCTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHH
T ss_pred hcCCC-EEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc---------------------------chHH
Confidence 33566 8999999 8999999999999999999886 58898888763 2467
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+++.|++. .+|+ ++++++|+++....+. ..+++.+.|+.+
T Consensus 70 ~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~l~~~ 109 (111)
T 2pu9_C 70 LAKELGIR------VVPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAA 109 (111)
T ss_dssp HHHHHCCS------BSSE-EEEESSSSEEEEEESS-----CHHHHHHHHHHH
T ss_pred HHHHcCCC------eeeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence 88999998 8998 6777999999886542 366777777654
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-14 Score=116.46 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=77.1
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccc
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYP 175 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~ 175 (271)
.+.+...+|| ++||+|| ++||++|+.+.+.+ .++.+.+++ ++.++.|+.|............ ..+ ....+.
T Consensus 39 ~~~~a~~~gk-~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~--~~~-~~~~~~ 112 (172)
T 3f9u_A 39 GMEYARQHNK-PVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIM--ENG-TERTLR 112 (172)
T ss_dssp HHHHHHHTTC-CEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEE--ETT-EEEEEE
T ss_pred HHHHHHHcCC-eEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhh--hcc-hhhhhh
Confidence 4566667788 9999999 99999999864333 445555544 6999999998633211000000 000 011112
Q ss_pred eEEcCChHH-HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 176 LIADITKSI-SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 176 ~l~D~~~~~-~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+.|....+ .+.|++. .+|+++|||++|+++....+.. .+.+++++.|+.+
T Consensus 113 ~~~~~~~~~~~~~~~v~------~~Pt~~lid~~G~~~~~~~G~~---~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 113 TVGDKWSYLQRVKFGAN------AQPFYVLIDNEGNPLNKSYAYD---EDISKYINFLQTG 164 (172)
T ss_dssp EHHHHHHHHHHHHHSCC------CSSEEEEECTTSCBSSCCBCSC---CCHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHcCCC------CcceEEEECCCCCEEeeccCCC---CCHHHHHHHHHHH
Confidence 222222333 5899999 8999999999999999865432 2377777777654
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=96.08 Aligned_cols=90 Identities=17% Similarity=0.311 Sum_probs=72.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
++++++||+|| ++||++|+...|.|.++++++++ ++.++.|.+|. +.+++
T Consensus 36 ~~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~ 85 (136)
T 2l5l_A 36 EGDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEK----------------------------EQELA 85 (136)
T ss_dssp CCSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHH
T ss_pred cCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCC----------------------------CHHHH
Confidence 34458999999 99999999999999999999874 48888887753 34788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.|++. .+|+++++|++|+++ ...+ ..+.+++.+.|+.+.
T Consensus 86 ~~~~v~------~~Pt~~~~~~~G~~~-~~~G----~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 86 GAFGIR------SIPSILFIPMEGKPE-MAQG----AMPKASFKKAIDEFL 125 (136)
T ss_dssp HHTTCC------SSCEEEEECSSSCCE-EEES----CCCHHHHHHHHHHHH
T ss_pred HHcCCC------CCCEEEEECCCCcEE-EEeC----CCCHHHHHHHHHHHh
Confidence 899998 899999999999988 3333 245778888887653
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.30 E-value=9.4e-12 Score=99.15 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=83.1
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++ ++||+|| ++||++|+.+.|.|.+++++++++ +.++.|.+|. +.++++
T Consensus 23 ~k-~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~----------------------------~~~l~~ 71 (149)
T 3gix_A 23 EK-VLVLRFG-RDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQ----------------------------TAVYTQ 71 (149)
T ss_dssp SS-EEEEEEE-CTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTT----------------------------CCHHHH
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCc----------------------------CHHHHH
Confidence 55 9999999 999999999999999999988643 7888776642 356889
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCC----C--CCCHHHHHHHHHHHHHhhhCCCcccCCCCCCCC
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA----I--GRSVDETLRTLQALQYVQENPDEVCPAGWKPGD 254 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~----~--~~~~~e~l~~l~~l~~~~~~~~~~~p~~~~~~~ 254 (271)
.|++. .+|+++ ++++|+++....+... . ..+.+++.+.|+.+....++....+-.++++.+
T Consensus 72 ~~~v~------~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~~g~~~~~s~~~~~~ 138 (149)
T 3gix_A 72 YFDIS------YIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKN 138 (149)
T ss_dssp HTTCC------SSSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHHTTCSEEECCSCGGG
T ss_pred HcCCC------ccCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhhcCCceEECCccccc
Confidence 99998 899998 6689999944332111 1 245788888888875555555677777777665
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=91.57 Aligned_cols=89 Identities=17% Similarity=0.265 Sum_probs=69.6
Q ss_pred cccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 102 LSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+.+..++ ++||.|| ++||++|+...|.+.++.+++. ++.++.|.+| .+
T Consensus 15 l~~~~~k-~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d----------------------------~~ 62 (105)
T 3zzx_A 15 LNEAGNK-LVVIDFY-ATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVD----------------------------EC 62 (105)
T ss_dssp HHHTTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETT----------------------------TC
T ss_pred HHhcCCC-EEEEEEE-CCCCCCccCCCcchhhhhhccC--CeEEEEEecc----------------------------cC
Confidence 3344455 8999999 9999999999999999998875 5777766654 24
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.++++.|||. .+|+++++ ++|+++....+ .+.+++.+.|+.
T Consensus 63 ~~l~~~~~V~------~~PT~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k 103 (105)
T 3zzx_A 63 EDIAQDNQIA------CMPTFLFM-KNGQKLDSLSG-----ANYDKLLELVEK 103 (105)
T ss_dssp HHHHHHTTCC------BSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHH
T ss_pred HHHHHHcCCC------eecEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHh
Confidence 5789999999 89987777 79999998754 456777776653
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=91.56 Aligned_cols=88 Identities=13% Similarity=0.259 Sum_probs=71.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++||++|+...|.|.++++++++ ++.++.|+.|. +.+++
T Consensus 16 ~~~-~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~ 64 (112)
T 2voc_A 16 SEG-VVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE----------------------------NQETA 64 (112)
T ss_dssp SSS-EEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CCSHH
T ss_pred CCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHH
Confidence 455 8999999 89999999999999999999875 69999998763 24588
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++..+.+. ...+++.+.++.+
T Consensus 65 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 103 (112)
T 2voc_A 65 GKYGVM------SIPTLLVL-KDGEVVETSVGF----KPKEALQELVNKH 103 (112)
T ss_dssp HHTTCC------SBSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHTT
T ss_pred HHcCCC------cccEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 999998 89999999 899999886543 3466666666543
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=92.86 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=71.8
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.+.+++ ++||+|| ++||++|+...|.|.+++++++ ++.++.|..|. +.
T Consensus 27 ~~~~~k-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------------~~ 74 (116)
T 3qfa_C 27 DAAGDK-LVVVDFS-ATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVDD----------------------------CQ 74 (116)
T ss_dssp HHHTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHTTCT--TSEEEEEETTT----------------------------TH
T ss_pred HhcCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CH
Confidence 344566 8999999 9999999999999999999886 48888888753 35
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++++.|++. .+|+++++ ++|+++....+. +.+++.+.|+.+
T Consensus 75 ~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 115 (116)
T 3qfa_C 75 DVASECEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL 115 (116)
T ss_dssp HHHHHTTCC------SSSEEEEE-SSSSEEEEEESC-----CHHHHHHHHHHH
T ss_pred HHHHHcCCc------cccEEEEE-eCCeEEEEEcCC-----CHHHHHHHHHHh
Confidence 788999999 89998888 899999886532 567777776653
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.6e-11 Score=88.61 Aligned_cols=87 Identities=21% Similarity=0.321 Sum_probs=68.4
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++ ++||+|| ++||++|+...|.|.+++++++..++.++.|..+. +.++++
T Consensus 21 ~~-~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~ 70 (112)
T 3d6i_A 21 DK-LIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE----------------------------NSEISE 70 (112)
T ss_dssp TC-CEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT----------------------------CHHHHH
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc----------------------------CHHHHH
Confidence 55 8999999 99999999999999999998766679999998764 247889
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.|++. .+|+++++ ++|+++....+. ..+++.+.|+.+
T Consensus 71 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 107 (112)
T 3d6i_A 71 LFEIS------AVPYFIII-HKGTILKELSGA-----DPKEYVSLLEDC 107 (112)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEECSC-----CHHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-ECCEEEEEecCC-----CHHHHHHHHHHH
Confidence 99998 89998888 799999886542 345566666654
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-11 Score=95.19 Aligned_cols=112 Identities=10% Similarity=0.097 Sum_probs=84.5
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~ 159 (271)
.|..+++..+..+.+. .+...-..++ ++||+|| ++||++|+...|.|.++++++++ ++.++.|..|.
T Consensus 31 ~~~~~~~~~v~~l~~~---~~~~~~~~~k-~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~------- 97 (148)
T 3p2a_A 31 CGHSLFDGEVINATAE---TLDKLLQDDL-PMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEA------- 97 (148)
T ss_dssp TCCBTTCCCCEECCTT---THHHHTTCSS-CEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------
T ss_pred cCCccccCCceecCHH---HHHHHHhcCC-cEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcC-------
Confidence 4667777777655444 3332223455 8999999 99999999999999999999865 48888887752
Q ss_pred HHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.++++.|++. .+|+++++ ++|+++..+.+. ...+++.+.|+.+.
T Consensus 98 ---------------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l 142 (148)
T 3p2a_A 98 ---------------------EPALSTRFRIR------SIPTIMLY-RNGKMIDMLNGA----VPKAPFDNWLDEQL 142 (148)
T ss_dssp ---------------------CHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSC----CCHHHHHHHHHHHH
T ss_pred ---------------------CHHHHHHCCCC------ccCEEEEE-ECCeEEEEEeCC----CCHHHHHHHHHHHh
Confidence 34788899998 89998888 699999876443 45778888887653
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=92.13 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=70.6
Q ss_pred cccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 104 DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 104 d~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
+..|+ ++||+|| ++||++|+...|.+.+++++++ ++.++.|..+. .+.+
T Consensus 34 ~~~~~-~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~---------------------------~~~~ 82 (124)
T 1faa_A 34 AAGDK-PVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKT 82 (124)
T ss_dssp HTTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHH
T ss_pred hcCCC-EEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc---------------------------chHH
Confidence 33566 8999999 9999999999999999999886 68888887763 1357
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+++.|++. .+|+ ++++++|+++....+. ..+++.+.|+.+
T Consensus 83 ~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~i~~~ 122 (124)
T 1faa_A 83 LAKELGIR------VVPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAA 122 (124)
T ss_dssp HHHHHCCS------SSSE-EEEEETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred HHHHcCCC------eeeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence 88999998 8898 5566899999886542 367777777654
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-11 Score=89.00 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=69.1
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++ ++||+|| ++||++|+...|.|.+++++++ ++.++.|..|. +.++++
T Consensus 24 ~k-~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~l~~ 71 (109)
T 3f3q_A 24 DK-LVVVDFY-ATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDE----------------------------LGDVAQ 71 (109)
T ss_dssp SS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHH
T ss_pred CC-EEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Confidence 55 8999999 9999999999999999999886 58888887642 357889
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.|++. .+|++++++ +|+++....+. ..+++.+.|+.+
T Consensus 72 ~~~v~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~ 108 (109)
T 3f3q_A 72 KNEVS------AMPTLLLFK-NGKEVAKVVGA-----NPAAIKQAIAAN 108 (109)
T ss_dssp HTTCC------SSSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred HcCCC------ccCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHhh
Confidence 99999 899999997 99999986543 346666666543
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=94.35 Aligned_cols=107 Identities=8% Similarity=0.030 Sum_probs=77.8
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++ ++||+|| ++||++|+...|.|.++++++++ ++.++.|.+|. +.++++
T Consensus 23 ~k-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~~~~ 71 (142)
T 1qgv_A 23 DR-VVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITE----------------------------VPDFNK 71 (142)
T ss_dssp SS-EEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------CCTTTT
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEcccc----------------------------CHHHHH
Confidence 55 8999999 99999999999999999999864 58888888763 123577
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCC------CCCCHHHHHHHHHHHHHhhhCCCcccCCCCC
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA------IGRSVDETLRTLQALQYVQENPDEVCPAGWK 251 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~------~~~~~~e~l~~l~~l~~~~~~~~~~~p~~~~ 251 (271)
.|++. .+|+++++ ++|+++....+... ...+.+++++.|+.+.....+....|-.+|+
T Consensus 72 ~~~i~------~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 135 (142)
T 1qgv_A 72 MYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKD 135 (142)
T ss_dssp SSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTTTCSEEECCCC
T ss_pred HcCCC------CCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 89998 89999998 58998886544211 1124788888888776554443344444444
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-10 Score=86.86 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=71.3
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||+.|+...|.|.++.+++++ ++.++.|..|. +.++++.|
T Consensus 26 ~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~~~ 75 (115)
T 1thx_A 26 QPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDP----------------------------NPTTVKKY 75 (115)
T ss_dssp SCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTT----------------------------CHHHHHHT
T ss_pred ceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCC----------------------------CHHHHHHc
Confidence 48999999 89999999999999999999875 38999888763 24688899
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++. .+|+++++ ++|+++....+. ...+++.+.|+.+
T Consensus 76 ~v~------~~Pt~~~~-~~G~~~~~~~g~----~~~~~l~~~l~~~ 111 (115)
T 1thx_A 76 KVE------GVPALRLV-KGEQILDSTEGV----ISKDKLLSFLDTH 111 (115)
T ss_dssp TCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred CCC------ceeEEEEE-cCCEEEEEecCC----CCHHHHHHHHHHH
Confidence 998 89999999 899999876543 3567777777765
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.7e-11 Score=86.94 Aligned_cols=87 Identities=14% Similarity=0.253 Sum_probs=70.4
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++||+.|+...|.+.+++++++++ +.++.|..|. +.+++
T Consensus 18 ~~~-~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~----------------------------~~~~~ 66 (106)
T 3die_A 18 ESG-VQLVDFW-ATACGPCKMIAPVLEELAADYEGK-ADILKLDVDE----------------------------NPSTA 66 (106)
T ss_dssp CSS-EEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT----------------------------CHHHH
T ss_pred cCC-cEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCc----------------------------CHHHH
Confidence 455 8999999 999999999999999999998753 8888887753 35688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+.|++. .+|++++++ +|+++....+. ...+++.+.|+.
T Consensus 67 ~~~~v~------~~Pt~~~~~-~G~~~~~~~g~----~~~~~l~~~l~~ 104 (106)
T 3die_A 67 AKYEVM------SIPTLIVFK-DGQPVDKVVGF----QPKENLAEVLDK 104 (106)
T ss_dssp HHTTCC------SBSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHT
T ss_pred HhCCCc------ccCEEEEEe-CCeEEEEEeCC----CCHHHHHHHHHH
Confidence 899999 899999995 99999886543 356777776654
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.1e-11 Score=88.01 Aligned_cols=86 Identities=17% Similarity=0.362 Sum_probs=69.3
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||++|+...|.|.++++++++ ++.++.|+.|. +.++++.|
T Consensus 24 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~~~ 73 (112)
T 1t00_A 24 KPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDE----------------------------NPGTAAKY 73 (112)
T ss_dssp SCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHHHT
T ss_pred CeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCC----------------------------CHHHHHhC
Confidence 48999999 89999999999999999999865 48888888654 34688899
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++. .+|+++++ ++|+++....+. ...+++.+.|+.+
T Consensus 74 ~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 109 (112)
T 1t00_A 74 GVM------SIPTLNVY-QGGEVAKTIVGA----KPKAAIVRDLEDF 109 (112)
T ss_dssp TCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTHHH
T ss_pred CCC------cccEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 998 88987776 799999876543 3466777777654
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=95.07 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=75.2
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.+.+.+..|+ ++||+|| ++||++|+...|.|.++++++. ++.++.|++|.
T Consensus 38 ~~~~~~~~~k-~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~-------------------------- 87 (139)
T 3d22_A 38 KLSEASRDGK-IVLANFS-ARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDE-------------------------- 87 (139)
T ss_dssp HHHHHHHHTC-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT--------------------------
T ss_pred HHHHHhhcCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcc--------------------------
Confidence 3444556687 8999999 8999999999999999999884 79999998763
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.++++.||+. .+|+++++ ++|+++....+. ..+++.+.|+.+.
T Consensus 88 --~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~~ 131 (139)
T 3d22_A 88 --LSDFSASWEIK------ATPTFFFL-RDGQQVDKLVGA-----NKPELHKKITAIL 131 (139)
T ss_dssp --SHHHHHHTTCC------EESEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHH
T ss_pred --cHHHHHHcCCC------cccEEEEE-cCCeEEEEEeCC-----CHHHHHHHHHHHh
Confidence 35688999998 89998888 899999886543 4567777776553
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.3e-11 Score=90.75 Aligned_cols=86 Identities=23% Similarity=0.316 Sum_probs=69.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++||+.|+...|.|.++++++. ++.++.|..|. +.+++
T Consensus 37 ~~k-~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~ 84 (124)
T 1xfl_A 37 SKT-LVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE----------------------------LKSVA 84 (124)
T ss_dssp TTC-EEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------SHHHH
T ss_pred cCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------CHHHH
Confidence 576 8999999 8999999999999999999886 78888887742 35788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++....+ .+.+++.+.|+.+
T Consensus 85 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~~ 122 (124)
T 1xfl_A 85 SDWAIQ------AMPTFMFL-KEGKILDKVVG-----AKKDELQSTIAKH 122 (124)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred HHcCCC------ccCEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHHh
Confidence 999998 89987766 89999988654 2466777776654
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=89.02 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=71.0
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++ ++||+|| ++||+.|+...+.|.++++++.+ ++.++.|.+|. +.++++
T Consensus 31 ~k-~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 79 (119)
T 1w4v_A 31 ET-PVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDD----------------------------HTDLAI 79 (119)
T ss_dssp SS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTT----------------------------THHHHH
T ss_pred CC-cEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------CHHHHH
Confidence 45 8999999 99999999999999999998865 58898888753 346889
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.|++. .+|+++++ ++|+++....+. .+.+++.+.|+.+
T Consensus 80 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 80 EYEVS------AVPTVLAM-KNGDVVDKFVGI----KDEDQLEAFLKKL 117 (119)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-eCCcEEEEEcCC----CCHHHHHHHHHHH
Confidence 99999 89999999 899999876542 3567777777654
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=85.92 Aligned_cols=86 Identities=14% Similarity=0.288 Sum_probs=68.9
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||++|+...|.|.++++++++ ++.++.|+.|. +.++++.|
T Consensus 20 ~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~~~ 69 (107)
T 1dby_A 20 VPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE----------------------------SPNVASEY 69 (107)
T ss_dssp SCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHHHH
T ss_pred CcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHHHC
Confidence 48999999 89999999999999999998875 48888887653 34788899
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|+. .+|+++++ ++|+++....+. ...+++.+.|+.+
T Consensus 70 ~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 105 (107)
T 1dby_A 70 GIR------SIPTIMVF-KGGKKCETIIGA----VPKATIVQTVEKY 105 (107)
T ss_dssp TCC------SSCEEEEE-SSSSEEEEEESC----CCHHHHHHHHHHH
T ss_pred CCC------cCCEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 998 89997777 799999886543 3456676666654
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=95.04 Aligned_cols=93 Identities=11% Similarity=0.179 Sum_probs=70.6
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.-.+++.+|+ ++||+|| ++||++|+...|.|.++.+++ ++.++.|..|.
T Consensus 32 ~~~l~~~~~k-~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~-------------------------- 80 (133)
T 3cxg_A 32 NQVFSSTQNS-SIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDI-------------------------- 80 (133)
T ss_dssp HHHHTC-CCS-EEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTT--------------------------
T ss_pred HHHHHhcCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccc--------------------------
Confidence 3445666777 8999999 999999999999998877665 57777776542
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEE-cCCCc--EEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFII-DKEGV--IQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lI-D~~G~--V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.++++.|++. .+|+++++ |+||+ ++....+. ..+++.+.|+.+
T Consensus 81 --~~~l~~~~~v~------~~Pt~~~~~~~~g~g~~~~~~~G~-----~~~~l~~~l~~~ 127 (133)
T 3cxg_A 81 --HPKLNDQHNIK------ALPTFEFYFNLNNEWVLVHTVEGA-----NQNDIEKAFQKY 127 (133)
T ss_dssp --CHHHHHHTTCC------SSSEEEEEEEETTEEEEEEEEESC-----CHHHHHHHHHHH
T ss_pred --hHHHHHhcCCC------CCCEEEEEEecCCCeEEEEEEcCC-----CHHHHHHHHHHH
Confidence 35788999998 89999998 55666 87776432 467777777765
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.8e-11 Score=87.69 Aligned_cols=85 Identities=12% Similarity=0.236 Sum_probs=68.2
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||++|+...|.+.++.+++++ ++.++.|+.|. +.++++.|
T Consensus 18 ~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~~~ 67 (105)
T 1nsw_A 18 GPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE----------------------------NPETTSQF 67 (105)
T ss_dssp SCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTT----------------------------CHHHHHHT
T ss_pred CcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcC----------------------------CHHHHHHc
Confidence 48999999 89999999999999999998875 48888887653 34688899
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
|+. .+|+++++ ++|+++....+. ...+++.+.|+.
T Consensus 68 ~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~ 102 (105)
T 1nsw_A 68 GIM------SIPTLILF-KGGRPVKQLIGY----QPKEQLEAQLAD 102 (105)
T ss_dssp TCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTTT
T ss_pred CCc------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHH
Confidence 998 89999999 899999876543 345566665543
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=88.52 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=72.1
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHh---cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK---LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~---~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+++||+|| ++||++|+...|.+.++++++++ .++.++.|..+. +.+++
T Consensus 26 ~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~l~ 76 (133)
T 1x5d_A 26 DVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV----------------------------NQVLA 76 (133)
T ss_dssp SEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT----------------------------CCHHH
T ss_pred CeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC----------------------------CHHHH
Confidence 48999999 99999999999999999999873 458888887653 25789
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+.|++. .+|+++++++ |+++..+.+ ....+++.+.|+.+..
T Consensus 77 ~~~~v~------~~Pt~~~~~~-g~~~~~~~G----~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 77 SRYGIR------GFPTIKIFQK-GESPVDYDG----GRTRSDIVSRALDLFS 117 (133)
T ss_dssp HHHTCC------SSSEEEEEET-TEEEEEECS----CCSHHHHHHHHHHHHH
T ss_pred HhCCCC------eeCeEEEEeC-CCceEEecC----CCCHHHHHHHHHHHhh
Confidence 999999 8999999986 887777543 2467888888876643
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=85.31 Aligned_cols=87 Identities=14% Similarity=0.264 Sum_probs=70.8
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||+|| ++||+.|+...+.+.++.+++.+ ++.++.|..+. +.++++.
T Consensus 20 ~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~~ 69 (107)
T 2i4a_A 20 SGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD----------------------------NPETPNA 69 (107)
T ss_dssp SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT----------------------------CCHHHHH
T ss_pred CCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC----------------------------CHHHHHh
Confidence 348999999 89999999999999999999875 68888887653 2468899
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|++. .+|+++++ ++|+++....+. .+.+++.+.|+.+
T Consensus 70 ~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 70 YQVR------SIPTLMLV-RDGKVIDKKVGA----LPKSQLKAWVESA 106 (107)
T ss_dssp TTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHT
T ss_pred cCCC------ccCEEEEE-eCCEEEEEecCC----CCHHHHHHHHHhc
Confidence 9998 89999999 899999876543 3567777776643
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=85.68 Aligned_cols=87 Identities=14% Similarity=0.285 Sum_probs=70.1
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||+|| ++||+.|+...|.|.++++++++ ++.++.|..+. +.++++.
T Consensus 20 ~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~~ 69 (108)
T 2trx_A 20 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAPK 69 (108)
T ss_dssp SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CTTHHHH
T ss_pred CCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHHH
Confidence 348999999 89999999999999999998875 48888887653 2357889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
||+. .+|+++++ ++|+++....+. .+.+++.+.|+.+
T Consensus 70 ~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 106 (108)
T 2trx_A 70 YGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN 106 (108)
T ss_dssp TTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred cCCc------ccCEEEEE-eCCEEEEEEecC----CCHHHHHHHHHHh
Confidence 9998 89999999 899999876543 3567777777654
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=85.36 Aligned_cols=88 Identities=15% Similarity=0.229 Sum_probs=71.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++||+.|....|.+.++.+++++ .+.++.|..| .+.+++
T Consensus 20 ~~~-~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~----------------------------~~~~~~ 68 (109)
T 3tco_A 20 NNK-LVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVD----------------------------ENQKIA 68 (109)
T ss_dssp HSS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT----------------------------TCHHHH
T ss_pred cCC-eEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccc----------------------------cCHHHH
Confidence 355 8999999 99999999999999999999875 5888877764 245788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++....+. .+.+++.+.|+.+
T Consensus 69 ~~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~ 107 (109)
T 3tco_A 69 DKYSVL------NIPTTLIF-VNGQLVDSLVGA----VDEDTLESTVNKY 107 (109)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred HhcCcc------cCCEEEEE-cCCcEEEeeecc----CCHHHHHHHHHHH
Confidence 899998 89999999 899999986543 3567777777654
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-11 Score=90.68 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=76.3
Q ss_pred CCCCCCCeEEeeecCCCceeEecccc--cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDY--IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~--~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
.|...+.+.+.+..+- .-.+.+. .++ ++||+|| ++||++|+...|.|.++.++++ ++.++.|..|.
T Consensus 8 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~----- 75 (122)
T 2vlu_A 8 AAVAAEVISVHSLEQW---TMQIEEANTAKK-LVVIDFT-ASWCGPCRIMAPVFADLAKKFP--NAVFLKVDVDE----- 75 (122)
T ss_dssp ----CCCEEECSHHHH---HHHHHHHHHTTC-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-----
T ss_pred cCCCCcceeccCHHHH---HHHHHHhhccCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECCC-----
Confidence 4666677776522111 1122221 455 8999999 9999999999999999999886 48888887753
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.++++.|++. .+|+++++ ++|+++..+.+. . .+++.+.|+.+
T Consensus 76 -----------------------~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~-~~~l~~~l~~~ 118 (122)
T 2vlu_A 76 -----------------------LKPIAEQFSVE------AMPTFLFM-KEGDVKDRVVGA----I-KEELTAKVGLH 118 (122)
T ss_dssp -----------------------CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESS----C-HHHHHHHHHHH
T ss_pred -----------------------CHHHHHHcCCC------cccEEEEE-eCCEEEEEEeCc----C-HHHHHHHHHHH
Confidence 35688899998 89987666 899999876543 2 66777777655
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=100.57 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=61.1
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
.+++++|+ ++||+|| ++|||+|+.++|.|.++++++. ++.++.|+.|.. .+..+.+ .
T Consensus 48 ~l~~~~~k-~vvv~F~-A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~---~~~~~~~-------~--------- 104 (167)
T 1z6n_A 48 RLQRIERR-YRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGRA---EDDLRQR-------L--------- 104 (167)
T ss_dssp HHHTCCSC-EEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHH---HHHTTTT-------T---------
T ss_pred HHHHhCCC-EEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCC---HHHHHHH-------H---------
Confidence 46677887 8999999 9999999999999999998875 688888876531 1222221 0
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
..++. .+|+++++|++|+++.++
T Consensus 105 ------~~~v~------~iPt~i~~~~~G~~~~~~ 127 (167)
T 1z6n_A 105 ------ALERI------AIPLVLVLDEEFNLLGRF 127 (167)
T ss_dssp ------TCSSC------CSSEEEEECTTCCEEEEE
T ss_pred ------HcCCC------CcCeEEEECCCCCEEEEE
Confidence 01355 799999999999998875
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=88.51 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=71.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++||+.|....+.|.++.++++++++.++.|+.|. +.+++
T Consensus 32 ~~k-~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~----------------------------~~~~~ 81 (121)
T 2j23_A 32 GDK-VVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE----------------------------QSQIA 81 (121)
T ss_dssp SSS-CEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT----------------------------CHHHH
T ss_pred CCC-EEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC----------------------------CHHHH
Confidence 344 8999999 89999999999999999999887779999888763 35688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++....+. +.+++.+.|+.+
T Consensus 82 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 119 (121)
T 2j23_A 82 QEVGIR------AMPTFVFF-KNGQKIDTVVGA-----DPSKLQAAITQH 119 (121)
T ss_dssp HHHTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred HHcCCC------cccEEEEE-ECCeEEeeEcCC-----CHHHHHHHHHHh
Confidence 899998 89998888 599999886432 467777777654
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-10 Score=85.89 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=69.6
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++ ++||+|| ++||++|+...|.|.++.+++.+ ++.++.|..|. +.++++
T Consensus 24 ~~-~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 72 (112)
T 1ep7_A 24 HK-PIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVAE 72 (112)
T ss_dssp TC-CEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHHH
T ss_pred CC-eEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc----------------------------hHHHHH
Confidence 66 8999999 89999999999999999999875 68999887753 357888
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.|++. .+|+++++ ++|+++....+. +.+++.+.|+.+
T Consensus 73 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 109 (112)
T 1ep7_A 73 AAGIT------AMPTFHVY-KDGVKADDLVGA-----SQDKLKALVAKH 109 (112)
T ss_dssp HHTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHHH
Confidence 99998 88986665 899999876432 466777777655
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-10 Score=83.77 Aligned_cols=87 Identities=15% Similarity=0.287 Sum_probs=70.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++|||.|+...+.+.++.+++++ +.++.|+.|. +.+++
T Consensus 15 ~~~-~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~----------------------------~~~~~ 62 (104)
T 2e0q_A 15 SHE-IAVVDFW-AEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE----------------------------NPDIA 62 (104)
T ss_dssp HSS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHH
T ss_pred cCC-cEEEEEE-CCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC----------------------------CHHHH
Confidence 455 8999999 89999999999999999998864 8888888753 34688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. ..|+++++ ++|+++....+. ...+++.+.|+.+
T Consensus 63 ~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~ 101 (104)
T 2e0q_A 63 ARYGVM------SLPTVIFF-KDGEPVDEIIGA----VPREEIEIRIKNL 101 (104)
T ss_dssp HHTTCC------SSCEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred HhCCcc------ccCEEEEE-ECCeEhhhccCC----CCHHHHHHHHHHH
Confidence 899998 89999999 899999876543 3467777777654
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=9e-11 Score=90.78 Aligned_cols=87 Identities=13% Similarity=0.243 Sum_probs=70.2
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||+|| ++||+.|+...|.|.++++++++ ++.++.|++|. +.++++.
T Consensus 40 ~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~~ 89 (128)
T 2o8v_B 40 DGAILVDFW-AEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAPK 89 (128)
T ss_dssp SSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CCTTSGG
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHH
Confidence 348999999 99999999999999999999875 48888888764 1246678
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|++. .+|+++++ ++|+++....+. ...+++.+.|+.+
T Consensus 90 ~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 90 YGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN 126 (128)
T ss_dssp GTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred cCCC------ccCEEEEE-eCCEEEEEEcCC----CCHHHHHHHHHHh
Confidence 9998 89999999 899999876543 3567777777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.8e-11 Score=103.05 Aligned_cols=75 Identities=11% Similarity=0.274 Sum_probs=64.1
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+|+ ++||+|| ++||++|+...|.+.++.+++++ ++.++.|.+|. +.+++
T Consensus 25 ~~~-~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~ 73 (287)
T 3qou_A 25 MTT-PVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDA----------------------------EQMIA 73 (287)
T ss_dssp TTS-CEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTT----------------------------CHHHH
T ss_pred CCC-eEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCcc----------------------------CHHHH
Confidence 466 8999999 99999999999999999999974 48888887763 24788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
+.|+|. .+|+++++ ++|+++..+.+.
T Consensus 74 ~~~~v~------~~Pt~~~~-~~G~~~~~~~g~ 99 (287)
T 3qou_A 74 AQFGLR------AIPTVYLF-QNGQPVDGFQGP 99 (287)
T ss_dssp HTTTCC------SSSEEEEE-ETTEEEEEEESC
T ss_pred HHcCCC------CCCeEEEE-ECCEEEEEeeCC
Confidence 999999 89999999 799999887653
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.6e-11 Score=87.21 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=61.7
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||++|+...|.+.++++++. ++.++.|..|. +.++++.|
T Consensus 19 ~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~----------------------------~~~l~~~~ 67 (105)
T 4euy_A 19 QLVLLFIK-TENCGVCDVMLRKVNYVLENYN--YVEKIEILLQD----------------------------MQEIAGRY 67 (105)
T ss_dssp SEEEEEEE-ESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECC----------------------------C-------
T ss_pred CCEEEEEe-CCCCcchHHHHHHHHHHHHHcC--CceEEEEECCC----------------------------CHHHHHhc
Confidence 48999999 9999999999999999999884 68888887653 23677889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++. .+|+++++ ++|+++....+. .+.+++.+.|+.+
T Consensus 68 ~v~------~~Pt~~~~-~~G~~~~~~~g~----~~~~~l~~~l~~~ 103 (105)
T 4euy_A 68 AVF------TGPTVLLF-YNGKEILRESRF----ISLENLERTIQLF 103 (105)
T ss_dssp --C------CCCEEEEE-ETTEEEEEEESS----CCHHHHHHHHHTT
T ss_pred CCC------CCCEEEEE-eCCeEEEEEeCC----cCHHHHHHHHHHh
Confidence 998 89999999 499999886543 3567777776643
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=84.64 Aligned_cols=87 Identities=14% Similarity=0.261 Sum_probs=68.5
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||+|| ++||+.|+...+.+.++++++++ ++.++.|+.+. +.++++.
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~~ 67 (105)
T 1fb6_A 18 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDE----------------------------APGIATQ 67 (105)
T ss_dssp SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHHH
T ss_pred CCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcc----------------------------hHHHHHh
Confidence 348999999 89999999999999999998875 48888887653 2468889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|++. .+|+++++ ++|+++....+. ...+++.+.|+.+
T Consensus 68 ~~v~------~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 68 YNIR------SIPTVLFF-KNGERKESIIGA----VPKSTLTDSIEKY 104 (105)
T ss_dssp TTCC------SSSEEEEE-ETTEEEEEEEEC----CCHHHHHHHHHHH
T ss_pred CCCC------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Confidence 9998 89997777 799999886543 3456666666643
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-10 Score=91.00 Aligned_cols=87 Identities=8% Similarity=0.199 Sum_probs=71.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+++ ++||+|| ++||++|+...|.|.++++++. ++.++.|.++. +.+++
T Consensus 31 ~~~-~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~----------------------------~~~l~ 78 (153)
T 2wz9_A 31 AKS-LLVVHFW-APWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG----------------------------VPEVS 78 (153)
T ss_dssp TTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHH
T ss_pred CCC-eEEEEEE-CCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC----------------------------CHHHH
Confidence 366 8999999 9999999999999999998874 79999888763 24688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.|++. .+|++++++ +|+++....+ ...+++.+.|+.+.
T Consensus 79 ~~~~v~------~~Pt~~~~~-~G~~~~~~~G-----~~~~~l~~~i~~~l 117 (153)
T 2wz9_A 79 EKYEIS------SVPTFLFFK-NSQKIDRLDG-----AHAPELTKKVQRHA 117 (153)
T ss_dssp HHTTCC------SSSEEEEEE-TTEEEEEEES-----SCHHHHHHHHHHHS
T ss_pred HHcCCC------CCCEEEEEE-CCEEEEEEeC-----CCHHHHHHHHHHHh
Confidence 999999 899999999 9999987653 24567777777653
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=87.70 Aligned_cols=89 Identities=17% Similarity=0.316 Sum_probs=69.4
Q ss_pred cccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 102 LSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+.+..|+ ++||+|| ++||++|+...|.+.++++++ ++.++.|..|. +
T Consensus 28 l~~~~~~-~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~----------------------------~ 74 (117)
T 2xc2_A 28 LEQHKNK-LVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK----------------------------L 74 (117)
T ss_dssp HHHTTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT----------------------------S
T ss_pred HHhCCCC-EEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc----------------------------c
Confidence 3444566 8999999 899999999999999988877 78888887752 3
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.++++.|++. .+|+++++ ++|+++....+ .+.+++.+.|+.+
T Consensus 75 ~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 75 EETARKYNIS------AMPTFIAI-KNGEKVGDVVG-----ASIAKVEDMIKKF 116 (117)
T ss_dssp HHHHHHTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred HHHHHHcCCC------ccceEEEE-eCCcEEEEEeC-----CCHHHHHHHHHHh
Confidence 5688899998 89997666 79999987654 2456666666543
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=84.13 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=69.3
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.+.+++ ++||+|| ++||+.|....+.+.++.++++ .++.++.|..|. +.
T Consensus 16 ~~~~~~-~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~----------------------------~~ 64 (106)
T 1xwb_A 16 TKASGK-LVVLDFF-ATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDE----------------------------CE 64 (106)
T ss_dssp HHHTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTT----------------------------CH
T ss_pred HhcCCC-EEEEEEE-CCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEeccc----------------------------hH
Confidence 334566 8999999 8999999999999999999886 368888888752 35
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++++.|++. .+|+++++ ++|+++....+ .+.+++.+.|+.
T Consensus 65 ~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g-----~~~~~l~~~i~~ 104 (106)
T 1xwb_A 65 DIAMEYNIS------SMPTFVFL-KNGVKVEEFAG-----ANAKRLEDVIKA 104 (106)
T ss_dssp HHHHHTTCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHH
T ss_pred HHHHHcCCC------cccEEEEE-cCCcEEEEEcC-----CCHHHHHHHHHH
Confidence 688899998 88986666 79999887643 245666666654
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-10 Score=83.30 Aligned_cols=89 Identities=16% Similarity=0.245 Sum_probs=69.9
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.+..++ ++||+|| ++|||.|....+.|.++.+++. ++.++.|..+. +.
T Consensus 15 ~~~~~~-~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~ 62 (104)
T 2vim_A 15 NENKGR-LIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ----------------------------NE 62 (104)
T ss_dssp HTTTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CH
T ss_pred HhcCCC-eEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC----------------------------CH
Confidence 334566 8999999 9999999999999999998885 79999988753 34
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++++.|++. ..|+++++ ++|+++....+ .+.+++.+.|+.+
T Consensus 63 ~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G-----~~~~~l~~~l~~~ 103 (104)
T 2vim_A 63 EAAAKYSVT------AMPTFVFI-KDGKEVDRFSG-----ANETKLRETITRH 103 (104)
T ss_dssp HHHHHTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred HHHHHcCCc------cccEEEEE-eCCcEEEEEeC-----CCHHHHHHHHHhh
Confidence 688899998 89997777 59999888654 2456666666543
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-10 Score=90.72 Aligned_cols=86 Identities=8% Similarity=0.177 Sum_probs=71.5
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||++|+...|.|.++++++++ ++.++.|+.|. +.++++.|
T Consensus 65 ~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~----------------------------~~~l~~~~ 114 (155)
T 2ppt_A 65 LPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQA----------------------------HPAVAGRH 114 (155)
T ss_dssp SCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------STHHHHHT
T ss_pred CcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCc----------------------------cHHHHHHc
Confidence 48999999 99999999999999999999875 48898888763 24688999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++. .+|+++++ ++|+++....+. .+.+++.+.|+.+
T Consensus 115 ~i~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 150 (155)
T 2ppt_A 115 RIQ------GIPAFILF-HKGRELARAAGA----RPASELVGFVRGK 150 (155)
T ss_dssp TCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred CCC------cCCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHHH
Confidence 999 89999999 799999886543 3567777777755
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-10 Score=87.23 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=69.6
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+||+|| ++||++|+...|.|.++++++++.++.++.|.++. +.++++.|+
T Consensus 24 ~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~~~~~~ 74 (126)
T 1x5e_A 24 DWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE----------------------------QPGLSGRFI 74 (126)
T ss_dssp EEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT----------------------------CHHHHHHTT
T ss_pred CEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC----------------------------CHHHHHHcC
Confidence 4899999 99999999999999999999987689999887653 245889999
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+. .+|+++++ ++|++ ..+.+ ....+++.+.|+.+.
T Consensus 75 v~------~~Pt~~~~-~~G~~-~~~~G----~~~~~~l~~~l~~~~ 109 (126)
T 1x5e_A 75 IN------ALPTIYHC-KDGEF-RRYQG----PRTKKDFINFISDKE 109 (126)
T ss_dssp CC------SSSEEEEE-ETTEE-EECCS----CCCHHHHHHHHHTCG
T ss_pred Cc------ccCEEEEE-eCCeE-EEeec----CCCHHHHHHHHHHHh
Confidence 98 89999999 89996 33322 245778888887654
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-10 Score=83.80 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=71.0
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.+.+++ ++||+|| ++||+.|+...|.+.++.++++ ++.++.|..|. +.
T Consensus 16 ~~~~~~-~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~----------------------------~~ 63 (105)
T 3m9j_A 16 DAAGDK-LVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDD----------------------------CQ 63 (105)
T ss_dssp HHTTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETTT----------------------------CH
T ss_pred HhcCCC-eEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhhh----------------------------hH
Confidence 334566 8999999 8999999999999999999886 58888887653 35
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++.+.|++. ..|+++++ ++|+++....+. +.+++.+.|+.+
T Consensus 64 ~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~~ 104 (105)
T 3m9j_A 64 DVASESEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL 104 (105)
T ss_dssp HHHHHTTCC------BSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred HHHHHcCCC------cCcEEEEE-ECCeEEEEEeCC-----CHHHHHHHHHHh
Confidence 688899998 89999999 789998886532 466776666643
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-10 Score=83.35 Aligned_cols=86 Identities=13% Similarity=0.254 Sum_probs=70.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| +.||++|+...|.+.++.+++++ ++.++.|.+|. +.++++.|
T Consensus 23 ~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~~~ 72 (111)
T 3gnj_A 23 KACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEE----------------------------EKTLFQRF 72 (111)
T ss_dssp CCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHHHT
T ss_pred CEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCc----------------------------ChhHHHhc
Confidence 48999999 89999999999999999999874 58888887753 34788999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++. .+|+++++ ++|+++....+. ...+++.+.|+.+
T Consensus 73 ~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~ 108 (111)
T 3gnj_A 73 SLK------GVPQILYF-KDGEYKGKMAGD----VEDDEVEQMIADV 108 (111)
T ss_dssp TCC------SSCEEEEE-ETTEEEEEEESS----CCHHHHHHHHHHH
T ss_pred CCC------cCCEEEEE-ECCEEEEEEecc----CCHHHHHHHHHHH
Confidence 998 89999999 799998876543 3567777777654
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-10 Score=83.16 Aligned_cols=87 Identities=11% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++ ++||+|| ++||+.|....+.|.++.+++.+ ++.++.|+.+. +.++++
T Consensus 18 ~~-~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 66 (109)
T 2yzu_A 18 HP-LVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDE----------------------------NPKTAM 66 (109)
T ss_dssp CS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT----------------------------CHHHHH
T ss_pred CC-eEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCC----------------------------CHhHHH
Confidence 44 8999999 99999999999999999998874 58888888753 246888
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.|++. .+|+++++ ++|+++....+. ...+++.+.|+.+
T Consensus 67 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 67 RYRVM------SIPTVILF-KDGQPVEVLVGA----QPKRNYQAKIEKH 104 (109)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHTT
T ss_pred hCCCC------cCCEEEEE-eCCcEeeeEeCC----CCHHHHHHHHHHH
Confidence 99998 89999999 899999876543 3467777777644
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=86.59 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=66.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.|+ ++||+|| ++||+.|+...|.|.++++++. ++.++.|.+|. +.+++
T Consensus 29 ~~k-~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~--~v~~~~vd~~~----------------------------~~~l~ 76 (114)
T 2oe3_A 29 QND-KLVIDFY-ATWCGPCKMMQPHLTKLIQAYP--DVRFVKCDVDE----------------------------SPDIA 76 (114)
T ss_dssp HCS-EEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHH
T ss_pred CCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHH
Confidence 455 8999999 9999999999999999999886 48888887653 34688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.|++. .+|+++++ ++|+++....+. ..+++.+.|+
T Consensus 77 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~ 112 (114)
T 2oe3_A 77 KECEVT------AMPTFVLG-KDGQLIGKIIGA-----NPTALEKGIK 112 (114)
T ss_dssp HHTTCC------SBSEEEEE-ETTEEEEEEESS-----CHHHHHHHHH
T ss_pred HHCCCC------cccEEEEE-eCCeEEEEEeCC-----CHHHHHHHHH
Confidence 899998 89997766 899999886543 2556655554
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.6e-12 Score=102.01 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=75.2
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.+.+...+|+ ++||+|| ++||++|+.+.|.|.++.+.++. ++.++.|++|.....
T Consensus 38 ~~~~~~~~~k-~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~~---------------------- 92 (164)
T 1sen_A 38 GKKEAAASGL-PLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEEP---------------------- 92 (164)
T ss_dssp HHHHHHHHTC-CEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGSC----------------------
T ss_pred HHHHHHhcCC-eEEEEEE-CCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCchH----------------------
Confidence 5666777888 8999999 99999999999999997665543 578888887642110
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAI------GRSVDETLRTLQALQ 236 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~------~~~~~e~l~~l~~l~ 236 (271)
+.+.|++. +..+|+++|+|++|+++....+.... ....+++++.|+.+.
T Consensus 93 -----~~~~~~~~----~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l 147 (164)
T 1sen_A 93 -----KDEDFSPD----GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ 147 (164)
T ss_dssp -----SCGGGCTT----CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred -----HHHHhccc----CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence 12234442 11689999999999999876553221 257889999888764
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-10 Score=86.67 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=69.4
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||++|+...|.|.++++++++ .+.++.|..| .+.++++.|
T Consensus 36 ~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~l~~~~ 85 (130)
T 2dml_A 36 GLWLVEFY-APWCGHCQRLTPEWKKAATALKD-VVKVGAVNAD----------------------------KHQSLGGQY 85 (130)
T ss_dssp SCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETT----------------------------TCHHHHHHH
T ss_pred CeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCC----------------------------CCHHHHHHc
Confidence 48999999 99999999999999999999875 3788877754 245788999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++. .+|++++++++|+++..+.+ ....+++++.|...
T Consensus 86 ~v~------~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~l~~~ 122 (130)
T 2dml_A 86 GVQ------GFPTIKIFGANKNKPEDYQG----GRTGEAIVDAALSA 122 (130)
T ss_dssp TCC------SSSEEEEESSCTTSCEECCS----CCSHHHHHHHHHHH
T ss_pred CCC------ccCEEEEEeCCCCeEEEeec----CCCHHHHHHHHHHH
Confidence 998 89999999999985555433 24567787777654
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-10 Score=87.18 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=70.9
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||+|| ++||+.|+...|.|.++++++++ .+.++.|.+|. +.++++.
T Consensus 24 ~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~~ 73 (140)
T 3hz4_A 24 KKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIAT----------------------------NPWTAEK 73 (140)
T ss_dssp SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTT----------------------------CHHHHHH
T ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCc----------------------------CHhHHHH
Confidence 348999999 99999999999999999999875 48888887643 3468889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
|++. .+|+++++ ++|+++....+. ...+++.+.|+.+.
T Consensus 74 ~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l 111 (140)
T 3hz4_A 74 YGVQ------GTPTFKFF-CHGRPVWEQVGQ----IYPSILKNAVRDML 111 (140)
T ss_dssp HTCC------EESEEEEE-ETTEEEEEEESS----CCHHHHHHHHHHHH
T ss_pred CCCC------cCCEEEEE-eCCcEEEEEcCC----CCHHHHHHHHHHHh
Confidence 9999 89988877 799998876543 35677777776654
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-10 Score=83.56 Aligned_cols=86 Identities=10% Similarity=0.083 Sum_probs=67.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++||++|+...|.+.++.+++. ++.++.|..|. +.+++
T Consensus 20 ~~~-~v~v~f~-a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~----------------------------~~~~~ 67 (107)
T 1gh2_A 20 GSR-LAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ----------------------------CQGTA 67 (107)
T ss_dssp TTS-CEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHH
T ss_pred CCC-EEEEEEE-CCCChhhHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------CHHHH
Confidence 355 8999999 9999999999999999999883 68888887753 24688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++....+ ...+++.+.|+.+
T Consensus 68 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~~ 105 (107)
T 1gh2_A 68 ATNNIS------ATPTFQFF-RNKVRIDQYQG-----ADAVGLEEKIKQH 105 (107)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred HhcCCC------cccEEEEE-ECCeEEEEEeC-----CCHHHHHHHHHHh
Confidence 899998 89998888 79999987654 2345565665543
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-10 Score=84.63 Aligned_cols=86 Identities=26% Similarity=0.392 Sum_probs=69.9
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.|+ ++||+|| ++||+.|+...+.|.++.++++ ++.++.|..|. +.+++
T Consensus 27 ~~~-~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~~~~ 74 (118)
T 2vm1_A 27 TGK-LVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDE----------------------------LKDVA 74 (118)
T ss_dssp HTC-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHH
T ss_pred CCC-EEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEccc----------------------------CHHHH
Confidence 366 8999999 8999999999999999999886 78888887752 35688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++....+ .+.+++.+.|+.+
T Consensus 75 ~~~~v~------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~l~~~ 112 (118)
T 2vm1_A 75 EAYNVE------AMPTFLFI-KDGEKVDSVVG-----GRKDDIHTKIVAL 112 (118)
T ss_dssp HHTTCC------SBSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred HHcCCC------cCcEEEEE-eCCeEEEEecC-----CCHHHHHHHHHHH
Confidence 899998 89998777 79999987643 2467777777665
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.5e-10 Score=88.93 Aligned_cols=108 Identities=8% Similarity=0.048 Sum_probs=77.2
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++++|||.|| ++||++|+...|.|.++.+++.+ .+.|+-|.+|. ..+++.
T Consensus 40 ~~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe----------------------------~~e~a~ 89 (160)
T 2av4_A 40 DERLVCIRFG-HDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITE----------------------------VPDFNT 89 (160)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------CCTTTT
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCC----------------------------CHHHHH
Confidence 4459999999 99999999999999999999864 37777777763 346788
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccC----CCCC--CHHHHHHHHHHHHHhhhCC--CcccCCCCC
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL----AIGR--SVDETLRTLQALQYVQENP--DEVCPAGWK 251 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~----~~~~--~~~e~l~~l~~l~~~~~~~--~~~~p~~~~ 251 (271)
.|+|. .+|+++++ ++|+.+.+.++.. -.+. +.+++++.|+.+..-+.+. -+.||.++-
T Consensus 90 ~y~V~------siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~g~~~v~~p~~~~ 155 (160)
T 2av4_A 90 MYELY------DPVSVMFF-YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARKGRGLVISPKDYS 155 (160)
T ss_dssp TTTCC------SSEEEEEE-ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHTTCSEEECSSCC-
T ss_pred HcCCC------CCCEEEEE-ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhcCCeEEECCCccc
Confidence 99999 89999888 6898875321111 1122 3678888888765444332 455676653
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-10 Score=84.02 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=69.1
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
..++++||+|| ++||++|+...|.|.++.+++. ++.++.|..+. +.+++
T Consensus 17 ~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------------------------~~~l~ 65 (110)
T 2l6c_A 17 EGLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA----------------------------RPELM 65 (110)
T ss_dssp TTCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG----------------------------CHHHH
T ss_pred HcCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC----------------------------CHHHH
Confidence 33348999999 8999999999999999888765 67787776542 35688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++.+..+. .+.+++.+.++..
T Consensus 66 ~~~~v~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 66 KELGFE------RVPTLVFI-RDGKVAKVFSGI----MNPRELQALYASI 104 (110)
T ss_dssp HHTTCC------SSCEEEEE-ESSSEEEEEESC----CCHHHHHHHHHTC
T ss_pred HHcCCc------ccCEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHHH
Confidence 999998 89999999 899999887543 3466776666543
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=89.93 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=69.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
++||+|| ++||++|+.+.|.|.+++++++ +.++.|.+++.... .+. |...++++.|+
T Consensus 33 ~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~-~~~------------------d~~~~l~~~~~ 89 (135)
T 3emx_A 33 DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGE-REL------------------SAARLEMNKAG 89 (135)
T ss_dssp SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCH-HHH------------------HHHHHHHHHHT
T ss_pred cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhh-hhh------------------hhhHHHHHHcC
Confidence 7999999 9999999999999999998874 88999988653322 111 23367899999
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+. .+|++++++ +|+++....+. ...+.+.+.++.+.
T Consensus 90 v~------~~Pt~~~~~-~G~~v~~~~G~----~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 90 VE------GTPTLVFYK-EGRIVDKLVGA----TPWSLKVEKAREIY 125 (135)
T ss_dssp CC------SSSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHHHC
T ss_pred Cc------eeCeEEEEc-CCEEEEEEeCC----CCHHHHHHHHHHHh
Confidence 99 899776665 99999987653 34455555555553
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=89.42 Aligned_cols=88 Identities=14% Similarity=0.250 Sum_probs=68.9
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
++ ++||+|| ++||++|+...|.|.++++++++++ +.++.|..+. +.++
T Consensus 34 ~~-~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~ 83 (140)
T 2dj1_A 34 KD-TVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS----------------------------ASML 83 (140)
T ss_dssp CS-EEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT----------------------------CHHH
T ss_pred CC-eEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc----------------------------cHHH
Confidence 44 8999999 8999999999999999999998764 6666665432 3578
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++.|++. .+|+++|+ ++|+ +..+.+ ....+++.+.|+.+.
T Consensus 84 ~~~~~v~------~~Pt~~~~-~~G~-~~~~~g----~~~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 84 ASKFDVS------GYPTIKIL-KKGQ-AVDYDG----SRTQEEIVAKVREVS 123 (140)
T ss_dssp HHHTTCC------SSSEEEEE-ETTE-EEECCS----CCCHHHHHHHHHHHH
T ss_pred HHHCCCC------ccCeEEEE-ECCc-EEEcCC----CCCHHHHHHHHHHhc
Confidence 9999998 89999999 7899 444322 346788888887663
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.1e-10 Score=86.25 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=70.1
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++||+.|+...|.|.++++++. ++.++.|.+|. +.+++
T Consensus 36 ~~k-~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~ 83 (125)
T 1r26_A 36 EDI-LTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN----------------------------NSEIV 83 (125)
T ss_dssp SSS-CEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHH
T ss_pred cCC-EEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHH
Confidence 455 8999999 9999999999999999999884 69999888863 35688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.|++. .+|+++++ ++|+++....+ .+.+++.+.|+.+.
T Consensus 84 ~~~~v~------~~Pt~~i~-~~G~~~~~~~G-----~~~~~l~~~l~~~l 122 (125)
T 1r26_A 84 SKCRVL------QLPTFIIA-RSGKMLGHVIG-----ANPGMLRQKLRDII 122 (125)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHHH
T ss_pred HHcCCC------cccEEEEE-eCCeEEEEEeC-----CCHHHHHHHHHHHh
Confidence 999998 89997666 89999987654 24577777777653
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-10 Score=86.05 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=69.8
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++ ++||+|| ++||+.|+...|.|.++++++ .++.++.|.++. +.++++
T Consensus 23 ~~-~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~----------------------------~~~~~~ 70 (118)
T 2f51_A 23 PG-LVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK----------------------------NGNAAD 70 (118)
T ss_dssp SS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT----------------------------CHHHHH
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC----------------------------CHHHHH
Confidence 55 8999999 999999999999999999988 579999998763 246889
Q ss_pred HhCCccCCCCccceEEEEEcC---CCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDK---EGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~---~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.|++. .+|++++++. +|+++....+. ..+++.+.++...
T Consensus 71 ~~~i~------~~Pt~~~~~~~~~~G~~~~~~~G~-----~~~~l~~~~~~~~ 112 (118)
T 2f51_A 71 AYGVS------SIPALFFVKKEGNEIKTLDQFVGA-----DVSRIKADIEKFK 112 (118)
T ss_dssp HTTCC------SSSEEEEEEEETTEEEEEEEEESC-----CHHHHHHHHHHHC
T ss_pred hcCCC------CCCEEEEEeCCCCcceEEEeecCC-----CHHHHHHHHHHhh
Confidence 99999 8999999975 49999887543 3456666665543
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.4e-12 Score=95.93 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=73.9
Q ss_pred ceeEecccccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcc
Q 024201 97 FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLK 173 (271)
Q Consensus 97 g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~ 173 (271)
.+.+.+....|+ ++||+|| ++||++|+...|.+ .++.+.++. ++.++.|..+..
T Consensus 9 ~~~~~~~~~~~k-~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-------------------- 65 (130)
T 2lst_A 9 PEALALAQAHGR-MVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTP-------------------- 65 (130)
Confidence 457788888887 8999999 99999999999998 777777654 477777766431
Q ss_pred cceEEcCChHHHHHhCCccCCCCccceEEEEEcC-CCcE--EEEEeccCCCCCCHHHHHHHHHHH
Q 024201 174 YPLIADITKSISKSYGVLIPDQGIALRGLFIIDK-EGVI--QHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 174 f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~-~G~V--~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
...++++.|++. .+|+++|+|+ +|++ +....+. ...+++.+.|+.+
T Consensus 66 ------~~~~~~~~~~v~------~~Pt~~~~d~~~G~~~~~~~~~G~----~~~~~l~~~l~~~ 114 (130)
T 2lst_A 66 ------EGQELARRYRVP------GTPTFVFLVPKAGAWEEVGRLFGS----RPRAEFLKELRQV 114 (130)
Confidence 235678889998 8999999995 6998 6665443 2344556666544
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=89.00 Aligned_cols=91 Identities=10% Similarity=0.165 Sum_probs=65.2
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
++ ++||+|| ++||++|+...|.|.+++++++.+ ++.++.|..+. +..+.
T Consensus 25 ~~-~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~ 74 (133)
T 2dj3_A 25 KK-DVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA----------------------------NDITN 74 (133)
T ss_dssp TS-EEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT----------------------------SCCCC
T ss_pred CC-cEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc----------------------------CHHHH
Confidence 55 8999999 999999999999999999999753 57777776642 11234
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|++++++++|++....+... ..+.+++.+.|+.+
T Consensus 75 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~gg--~~~~~~l~~~l~~~ 116 (133)
T 2dj3_A 75 DQYKVE------GFPTIYFAPSGDKKNPIKFEGG--NRDLEHLSKFIDEH 116 (133)
T ss_dssp SSCCCS------SSSEEEEECTTCTTSCEECCSS--CCSTTHHHHHHHHH
T ss_pred hhcCCC------cCCEEEEEeCCCcccceEecCC--CcCHHHHHHHHHHh
Confidence 568888 8999999988776543322111 13456777777654
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-10 Score=83.76 Aligned_cols=86 Identities=19% Similarity=0.313 Sum_probs=67.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.|+ ++||+|| ++||+.|....+.|.++.+++. ++.++.|..|. +.++.
T Consensus 25 ~~~-~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~ 72 (113)
T 1ti3_A 25 SQK-LIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE----------------------------LKAVA 72 (113)
T ss_dssp SSS-EEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------CHHHH
T ss_pred cCC-eEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc----------------------------cHHHH
Confidence 466 8999999 8999999999999999998875 68888887753 34678
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++....+ . +.+++.+.|+.+
T Consensus 73 ~~~~v~------~~Pt~~~~-~~G~~~~~~~g-~----~~~~l~~~l~~~ 110 (113)
T 1ti3_A 73 EEWNVE------AMPTFIFL-KDGKLVDKTVG-A----DKDGLPTLVAKH 110 (113)
T ss_dssp HHHHCS------STTEEEEE-ETTEEEEEEEC-C----CTTHHHHHHHHH
T ss_pred HhCCCC------cccEEEEE-eCCEEEEEEec-C----CHHHHHHHHHHh
Confidence 889998 89998888 79999988654 2 234555555544
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=8.5e-10 Score=82.70 Aligned_cols=85 Identities=9% Similarity=0.221 Sum_probs=67.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.|+ ++||+|| ++||+.|....+.|.+++++++ ++.++.|..+. +.+++
T Consensus 25 ~~k-~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~----------------------------~~~~~ 72 (112)
T 1syr_A 25 QNE-LVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE----------------------------VSEVT 72 (112)
T ss_dssp HCS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------THHHH
T ss_pred cCC-eEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC----------------------------CHHHH
Confidence 455 8999999 9999999999999999999876 68999888763 23688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+.|++. .+|+++++ ++|+++....+. +.+++.+.|+.
T Consensus 73 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~ 109 (112)
T 1syr_A 73 EKENIT------SMPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEK 109 (112)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHT
T ss_pred HHcCCC------cccEEEEE-ECCcEEEEEeCC-----CHHHHHHHHHH
Confidence 899998 88986665 699998876432 46677666654
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-09 Score=84.70 Aligned_cols=88 Identities=11% Similarity=0.194 Sum_probs=71.0
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.+++ +||+|| ++||++|....+.|.++++++++ ++.++.|..+. +.+++
T Consensus 49 ~~~~-vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~ 97 (140)
T 1v98_A 49 GAPL-TLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDE----------------------------HPGLA 97 (140)
T ss_dssp CCCE-EEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CHHHH
T ss_pred cCCC-EEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCC----------------------------CHHHH
Confidence 4554 899999 99999999999999999999875 58888888763 24688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++..+.+. ...+++.+.|+.+
T Consensus 98 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~~ 136 (140)
T 1v98_A 98 ARYGVR------SVPTLVLF-RRGAPVATWVGA----SPRRVLEERLRPY 136 (140)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred HHCCCC------ccCEEEEE-eCCcEEEEEeCC----CCHHHHHHHHHHH
Confidence 899998 89999988 799999876543 3467777777655
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.06 E-value=7.9e-10 Score=82.09 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=68.1
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
++ ++||.|| ++||++|+...|.+.++.+++... ++.++.|..+. +.++
T Consensus 21 ~~-~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~l 70 (111)
T 3uvt_A 21 EG-ITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA----------------------------ERNI 70 (111)
T ss_dssp SS-EEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT----------------------------CHHH
T ss_pred CC-cEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc----------------------------cHhH
Confidence 45 8999999 899999999999999999887543 57777776643 2468
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++.|++. .+|+++++ ++|+++..+.+. .+.+++.+.|+.
T Consensus 71 ~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~ 109 (111)
T 3uvt_A 71 CSKYSVR------GYPTLLLF-RGGKKVSEHSGG----RDLDSLHRFVLS 109 (111)
T ss_dssp HHHTTCC------SSSEEEEE-ETTEEEEEECSC----CSHHHHHHHHHH
T ss_pred HHhcCCC------cccEEEEE-eCCcEEEeccCC----cCHHHHHHHHHh
Confidence 8899998 89998888 799998876443 456777777653
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.1e-10 Score=84.97 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=70.6
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||+|| ++||++|+...|.+.++++++.+ ++.++.|.++. +.++++.
T Consensus 21 ~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 70 (122)
T 3aps_A 21 KTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQA----------------------------YPQTCQK 70 (122)
T ss_dssp SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CHHHHHH
T ss_pred CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcC----------------------------CHHHHHH
Confidence 348999999 99999999999999999999875 68888887763 2368889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
|++. .+|++++++++|++. ...+......+.+++.+.|+.+.
T Consensus 71 ~~v~------~~Pt~~~~~~~~~~~-~~~g~~~~~~~~~~l~~~l~~~l 112 (122)
T 3aps_A 71 AGIK------AYPSVKLYQYERAKK-SIWEEQINSRDAKTIAALIYGKL 112 (122)
T ss_dssp TTCC------SSSEEEEEEEEGGGT-EEEEEEECCSCHHHHHHHHHHHH
T ss_pred cCCC------ccceEEEEeCCCccc-eeeccccCcCCHHHHHHHHHHHH
Confidence 9999 899999998888743 32222111246778888887653
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=92.65 Aligned_cols=88 Identities=14% Similarity=0.275 Sum_probs=71.3
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||+|| ++||++|+...|.|.++++++++ .+.++.|.+|. +.++++.
T Consensus 30 ~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~~ 79 (222)
T 3dxb_A 30 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAPK 79 (222)
T ss_dssp SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CTTTGGG
T ss_pred CCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCC----------------------------CHHHHHH
Confidence 348999999 99999999999999999999975 38888888753 2345678
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
|++. .+|+++|+ ++|+++....+. ...+++.+.|+.+.
T Consensus 80 ~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 80 YGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDANL 117 (222)
T ss_dssp GTCC------SBSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHS
T ss_pred cCCC------cCCEEEEE-ECCeEEEEeccc----cChHHHHHHHHhhc
Confidence 9998 89998888 489999876543 45788888887664
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-09 Score=84.10 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=71.2
Q ss_pred cEEEEEEecCCCC--CChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDFT--FVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~C--p~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+++||+|| ++|| ++|+...|-|.++.++|.+ .+.++-|.+|. +.+++.
T Consensus 34 ~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe----------------------------~~~la~ 83 (137)
T 2qsi_A 34 KIVVLFFR-GDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEA----------------------------ERGLMA 83 (137)
T ss_dssp SEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGG----------------------------HHHHHH
T ss_pred CcEEEEEe-CCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCC----------------------------CHHHHH
Confidence 48999999 9999 9999999999999999864 47777776553 468999
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.|||. .+|+.+|+ +||+++.+..+. ...+++.+.|+.+.
T Consensus 84 ~ygV~------siPTlilF-kdG~~v~~~vG~----~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 84 RFGVA------VCPSLAVV-QPERTLGVIAKI----QDWSSYLAQIGAML 122 (137)
T ss_dssp HHTCC------SSSEEEEE-ECCEEEEEEESC----CCHHHHHHHHHHHH
T ss_pred HcCCc------cCCEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHHHh
Confidence 99999 89999999 899999998654 34566777776554
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=82.49 Aligned_cols=90 Identities=8% Similarity=0.031 Sum_probs=67.9
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh----cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK----LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~----~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
++ ++||.|| ++||++|+...|.+.++.+++.. .++.++.|.++. +.
T Consensus 33 ~~-~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~----------------------------~~ 82 (127)
T 3h79_A 33 EK-DVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK----------------------------YP 82 (127)
T ss_dssp TC-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT----------------------------CH
T ss_pred CC-CEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc----------------------------cH
Confidence 44 8999999 99999999999999999988863 246677676542 35
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++++.|++. ..|+++++++.+++....+. -..+.+++++.|+.+
T Consensus 83 ~l~~~~~v~------~~Pt~~~~~~g~~~~~~~~~---G~~~~~~l~~~i~~~ 126 (127)
T 3h79_A 83 DVIERMRVS------GFPTMRYYTRIDKQEPFEYS---GQRYLSLVDSFVFQN 126 (127)
T ss_dssp HHHHHTTCC------SSSEEEEECSSCSSSCEECC---SCCCHHHHHHHHHHH
T ss_pred hHHHhcCCc------cCCEEEEEeCCCCCCceEec---CCccHHHHHHHHHhc
Confidence 789999999 89999999877765312111 235788888877653
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-09 Score=81.97 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|+ ++||+|| ++|||+|+...|.|.+++++++ ..++.|.++...+. +...++++
T Consensus 29 ~~-~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~----------------------~~~~~~~~ 81 (118)
T 1zma_A 29 KE-TATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQL----------------------NDLQAFRS 81 (118)
T ss_dssp TC-CEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGH----------------------HHHHHHHH
T ss_pred CC-eEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcH----------------------HHHHHHHH
Confidence 45 8999999 9999999999999999988764 45666776653211 11246788
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.||+. .+|+++++ ++|+++.+..+. ...+++.+.|
T Consensus 82 ~~~i~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l 116 (118)
T 1zma_A 82 RYGIP------TVPGFVHI-TDGQINVRCDSS----MSAQEIKDFA 116 (118)
T ss_dssp HHTCC------SSCEEEEE-ETTEEEEECCTT----CCHHHHHHHH
T ss_pred HcCCC------CCCeEEEE-ECCEEEEEecCC----CCHHHHHHHh
Confidence 99999 89999999 589998775432 3455665554
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-10 Score=94.04 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=72.8
Q ss_pred ccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 105 YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 105 ~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
..|+ ++||.|| ++||++|....|.+.++++++++ .+.++.|.++. +.++
T Consensus 112 ~~~~-~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l 160 (210)
T 3apq_A 112 NSGE-LWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGD----------------------------DRML 160 (210)
T ss_dssp HHSC-CEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT----------------------------CHHH
T ss_pred ccCC-cEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCc----------------------------cHHH
Confidence 4566 8999999 99999999999999999999864 48888887653 2468
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++.|++. .+|+++++ ++|+++....+ ..+.+++.+.|+.+.
T Consensus 161 ~~~~~v~------~~Pt~~~~-~~G~~~~~~~G----~~~~~~l~~~i~~~l 201 (210)
T 3apq_A 161 CRMKGVN------SYPSLFIF-RSGMAAVKYNG----DRSKESLVAFAMQHV 201 (210)
T ss_dssp HHHTTCC------SSSEEEEE-CTTSCCEECCS----CCCHHHHHHHHHHHH
T ss_pred HHHcCCC------cCCeEEEE-ECCCceeEecC----CCCHHHHHHHHHHhC
Confidence 8889998 89999999 99999877543 246788888887653
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=82.35 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=67.0
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||+.|+...+.|.++.++++. ++.++.|..+. +.++++.|
T Consensus 31 ~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~~~ 80 (121)
T 2i1u_A 31 KPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDT----------------------------NPETARNF 80 (121)
T ss_dssp SCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHHHT
T ss_pred CcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHhc
Confidence 48999999 89999999999999999998865 58888888753 24688899
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
++. .+|+++++ ++|+++....+. ...+++.+.|+
T Consensus 81 ~i~------~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~l~ 114 (121)
T 2i1u_A 81 QVV------SIPTLILF-KDGQPVKRIVGA----KGKAALLRELS 114 (121)
T ss_dssp TCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTC
T ss_pred CCC------cCCEEEEE-ECCEEEEEecCC----CCHHHHHHHHH
Confidence 998 89998888 599998876543 34556666554
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-09 Score=84.04 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=66.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||++|+...|.|.++++++. ++.++.|.++.. . +.|
T Consensus 31 ~~vvv~f~-a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~-------------------~------------~~~ 76 (135)
T 2dbc_A 31 LWVVIHLY-RSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSC-------------------I------------EHY 76 (135)
T ss_dssp CEEEEEEC-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSS-------------------C------------SSC
T ss_pred CEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcC-------------------c------------ccC
Confidence 38999999 9999999999999999998874 688888877641 0 367
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCC---CHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGR---SVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~---~~~e~l~~l~~l 235 (271)
++. .+|++++++ +|+++....+....+. ..+++.+.|+..
T Consensus 77 ~i~------~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 77 HDN------CLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp CSS------CCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred CCC------CCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 888 899999985 9999998776543322 566666666654
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=86.32 Aligned_cols=88 Identities=10% Similarity=0.137 Sum_probs=70.2
Q ss_pred cEEEEEEecCCC--CCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDF--TFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~--Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+++||+|| +.| |++|+...|.|.++.++|.++.+.|+-|.+| .+.+++.
T Consensus 35 ~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvD----------------------------e~~~lA~ 85 (140)
T 2qgv_A 35 PDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLE----------------------------QSEAIGD 85 (140)
T ss_dssp SSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHH----------------------------HHHHHHH
T ss_pred CCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECC----------------------------CCHHHHH
Confidence 37888888 898 9999999999999999997533777766544 2368999
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.|||. .+|+.+|+ +||+++.+..+. ...+++.+.|+.+.
T Consensus 86 ~ygV~------sIPTlilF-k~G~~v~~~~G~----~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 86 RFGAF------RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLV 124 (140)
T ss_dssp HHTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHH
T ss_pred HcCCc------cCCEEEEE-ECCEEEEEEecC----CCHHHHHHHHHHHh
Confidence 99999 89999888 899999997653 34567777777553
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-10 Score=85.13 Aligned_cols=89 Identities=16% Similarity=0.315 Sum_probs=66.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
.++ ++||+|| ++||+.|+...+.+.++++++++.+ +.++.|..+. +.+
T Consensus 23 ~~~-~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~ 72 (120)
T 1mek_A 23 AHK-YLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE----------------------------ESD 72 (120)
T ss_dssp HCS-EEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT----------------------------CCS
T ss_pred cCC-eEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC----------------------------CHH
Confidence 355 8999999 8999999999999999999987643 5555555432 236
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEE--EEEeccCCCCCCHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQ--HSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~--~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+++.|++. .+|+++++ ++|+++ ....+ ....+++.+.|+.+
T Consensus 73 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~~~g----~~~~~~l~~~l~~~ 115 (120)
T 1mek_A 73 LAQQYGVR------GYPTIKFF-RNGDTASPKEYTA----GREADDIVNWLKKR 115 (120)
T ss_dssp SHHHHTCC------SSSEEEEE-ESSCSSSCEECCC----CSSHHHHHHHHHTT
T ss_pred HHHHCCCC------cccEEEEE-eCCCcCCcccccC----ccCHHHHHHHHHhc
Confidence 78899998 89999999 688866 54332 24567777777643
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=82.50 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=60.9
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+++ ++||+|| ++||++|+...|.|.++++++++.++.++.|.++.. .+++
T Consensus 25 ~~~-~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~----------------------------~~~~ 74 (137)
T 2dj0_A 25 KRV-TWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRY----------------------------TDVS 74 (137)
T ss_dssp TTS-CEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTC----------------------------HHHH
T ss_pred CCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccC----------------------------HHHH
Confidence 444 8999999 999999999999999999999866788888877642 2334
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCC
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA 220 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~ 220 (271)
+.|++.....-..+|+++++ ++|+++....+...
T Consensus 75 ~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~~ 108 (137)
T 2dj0_A 75 TRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQIDK 108 (137)
T ss_dssp HHTTCCCCSSSSCSSEEEEE-SSSSEEEEESCBCS
T ss_pred HHccCcccCCcCCCCEEEEE-ECCEEEEEecCcCc
Confidence 44444210000168999988 79999988765433
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=84.03 Aligned_cols=86 Identities=14% Similarity=0.300 Sum_probs=63.9
Q ss_pred CcEEEEEEecCCCCC--------------ChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcc
Q 024201 108 KKYVILFFYPLDFTF--------------VCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLK 173 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp--------------~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~ 173 (271)
++++||.|| ++||+ +|+...|.+.++++++++ ++.++.|..|.
T Consensus 21 ~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~--------------------- 77 (123)
T 1oaz_A 21 DGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ--------------------- 77 (123)
T ss_dssp SSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTS---------------------
T ss_pred CCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------
Confidence 348999999 99999 999999999999988875 48888887763
Q ss_pred cceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 174 YPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 174 f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+.++++.||+. .+|+++++ ++|+++....+. .+.+++.+.|+.
T Consensus 78 -------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~ 120 (123)
T 1oaz_A 78 -------NPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA 120 (123)
T ss_dssp -------CTTTGGGGTCC------BSSEEEEE-ESSSEEEEEESC----CCHHHHHHHHTT
T ss_pred -------CHHHHHHcCCC------ccCEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHH
Confidence 23577889998 89999999 899999876543 346677776654
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-10 Score=90.56 Aligned_cols=98 Identities=8% Similarity=0.044 Sum_probs=64.0
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHH--HHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY--TEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~--~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
......|| +|||+|| ++||++|+...|.+.+.. .++. +..++.|.+|.. .
T Consensus 38 ~~A~~~~K-pVlV~F~-A~WC~~Ck~m~p~~~~~~~~~~~~--~~~fv~V~vD~e--------~---------------- 89 (151)
T 3ph9_A 38 FYAQKSKK-PLMVIHH-LEDCQYSQALKKVFAQNEEIQEMA--QNKFIMLNLMHE--------T---------------- 89 (151)
T ss_dssp HHHHHHTC-CEEEEEC-CTTCHHHHHHHHHHHHCHHHHHHH--HHTCEEEEESSC--------C----------------
T ss_pred HHHHHcCC-cEEEEEE-CCCCHhHHHHHHHHhcCHHHHHHh--hcCeEEEEecCC--------c----------------
Confidence 33344566 8999999 999999999999887642 2222 234566666520 0
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAI------GRSVDETLRTLQAL 235 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~------~~~~~e~l~~l~~l 235 (271)
.+.+..|++. .+|+++++|++|+++....+.... ..+.+++++.++..
T Consensus 90 ---~~~~~~~~v~------~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a 143 (151)
T 3ph9_A 90 ---TDKNLSPDGQ------YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKA 143 (151)
T ss_dssp ---SCGGGCTTCC------CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred ---hhhHhhcCCC------CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence 0013346666 799999999999999986654111 13466777766644
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-09 Score=89.48 Aligned_cols=89 Identities=12% Similarity=0.215 Sum_probs=70.0
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
+|+ ++||+|| ++||++|+...|.|.++++++++++ +.++.|..+. +.+
T Consensus 31 ~~~-~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~ 80 (241)
T 3idv_A 31 DKD-TVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS----------------------------ASV 80 (241)
T ss_dssp TCS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT----------------------------CHH
T ss_pred cCC-eEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC----------------------------CHH
Confidence 455 8999999 9999999999999999999998765 7777776642 357
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+++.||+. .+|++++++ +|+++. +.+ ....+++.+.++.+.
T Consensus 81 l~~~~~v~------~~Pt~~~~~-~g~~~~-~~g----~~~~~~l~~~i~~~~ 121 (241)
T 3idv_A 81 LASRFDVS------GYPTIKILK-KGQAVD-YEG----SRTQEEIVAKVREVS 121 (241)
T ss_dssp HHHHTTCC------SSSEEEEEE-TTEEEE-CCS----CSCHHHHHHHHHHHH
T ss_pred HHHhcCCC------cCCEEEEEc-CCCccc-ccC----cccHHHHHHHHhhcc
Confidence 89999999 899999995 677663 222 356778887777653
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-09 Score=81.24 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=64.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh----cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK----LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~----~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
.++ ++||+|| ++||++|+...|.|.++++++++ .++.++.|..+. . .
T Consensus 24 ~~~-~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~------------------~-~-------- 74 (121)
T 2djj_A 24 DTK-DVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA------------------N-D-------- 74 (121)
T ss_dssp TTS-CEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT------------------S-C--------
T ss_pred CCC-CEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcc------------------c-c--------
Confidence 455 8999999 99999999999999999999986 268888887753 0 1
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcE-EEEEeccCCCCCCHHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVI-QHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V-~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+++ ++. .+|++++++++|++ +..+.+ ..+.+++.+.|+.+
T Consensus 75 --~~~--~v~------~~Pt~~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~ 115 (121)
T 2djj_A 75 --VPD--EIQ------GFPTIKLYPAGAKGQPVTYSG----SRTVEDLIKFIAEN 115 (121)
T ss_dssp --CSS--CCS------SSSEEEEECSSCTTSCCCCCC----CSCHHHHHHHHHHT
T ss_pred --ccc--ccC------cCCeEEEEeCcCCCCceEecC----CCCHHHHHHHHHhc
Confidence 111 677 89999999988884 333322 24577777777654
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=82.60 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=63.0
Q ss_pred ccccCCcEEEEEEecCC-------CCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccc
Q 024201 103 SDYIGKKYVILFFYPLD-------FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYP 175 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t-------~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~ 175 (271)
.+..|+ ++||+|| ++ |||+|+...|.|.++++++++ ++.++.|.++... .|.
T Consensus 20 ~~~~~~-~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~---~~~--------------- 78 (123)
T 1wou_A 20 EQHNGK-TIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YWK--------------- 78 (123)
T ss_dssp HTTTTS-EEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HHH---------------
T ss_pred HHhCCC-EEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCch---hhh---------------
Confidence 333466 8999999 89 999999999999999988764 7999999987632 221
Q ss_pred eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEE
Q 024201 176 LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQ 212 (271)
Q Consensus 176 ~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~ 212 (271)
|.+.++++.|++. .+|+++++++.+++.
T Consensus 79 ---d~~~~~~~~~~i~------~~Pt~~~~~~~~~~~ 106 (123)
T 1wou_A 79 ---DPNNDFRKNLKVT------AVPTLLKYGTPQKLV 106 (123)
T ss_dssp ---CTTCHHHHHHCCC------SSSEEEETTSSCEEE
T ss_pred ---chhHHHHHHCCCC------eeCEEEEEcCCceEe
Confidence 3456789999999 899999998744443
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-09 Score=74.79 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=60.6
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|++|| ++|||+|+...|.|.++.+++.+ ++.++.|..|. +.++++.||
T Consensus 3 ~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~~ 52 (85)
T 1nho_A 3 VNIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMV----------------------------DREKAIEYG 52 (85)
T ss_dssp CCEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTT----------------------------CGGGGGGTC
T ss_pred EEEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHhCC
Confidence 3678899 89999999999999999998864 68888887752 235778899
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+. .+|++++ ||++ ...+. .+.+++.+.|+.
T Consensus 53 v~------~~Pt~~~---~G~~--~~~G~----~~~~~l~~~l~~ 82 (85)
T 1nho_A 53 LM------AVPAIAI---NGVV--RFVGA----PSREELFEAIND 82 (85)
T ss_dssp SS------CSSEEEE---TTTE--EEECS----SCCHHHHHHHHH
T ss_pred ce------eeCEEEE---CCEE--EEccC----CCHHHHHHHHHH
Confidence 98 8999888 8998 33332 244666666654
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-10 Score=85.08 Aligned_cols=73 Identities=18% Similarity=0.377 Sum_probs=58.4
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||+|| ++|||.|....+.+.++.+++++ ++.++.|..|. +.++++.
T Consensus 19 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~~ 68 (106)
T 2yj7_A 19 DKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDE----------------------------NPNTAAQ 68 (106)
Confidence 348999999 89999999999999999988874 46776665532 2356788
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
||+. ..|+++++ ++|+++..+.+
T Consensus 69 ~~v~------~~Pt~~~~-~~g~~~~~~~g 91 (106)
T 2yj7_A 69 YGIR------SIPTLLLF-KNGQVVDRLVG 91 (106)
Confidence 8988 89999999 89999887544
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5e-09 Score=99.61 Aligned_cols=94 Identities=5% Similarity=0.047 Sum_probs=76.0
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK--LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~--~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
.+++++||+|| ++||++|+.+.|.+.++++++++ .++.++.|.++. |.+.+
T Consensus 28 ~~~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~--------------------------d~~~~ 80 (519)
T 3t58_A 28 GSSSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE--------------------------ETNSA 80 (519)
T ss_dssp SCSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS--------------------------GGGHH
T ss_pred hCCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc--------------------------cccHH
Confidence 33349999999 99999999999999999999986 368888898864 22468
Q ss_pred HHHHhCCccCCCCccceEEEEEcC---CCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDK---EGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~---~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+++.|||. .+|+++++++ +|+++....+ +.+.+++.+.|+.+.
T Consensus 81 l~~~~~V~------~~PTl~~f~~g~~~G~~~~~~~g----~~~~~~L~~~l~~~l 126 (519)
T 3t58_A 81 VCREFNIA------GFPTVRFFQAFTKNGSGATLPGA----GANVQTLRMRLIDAL 126 (519)
T ss_dssp HHHHTTCC------SBSEEEEECTTCCSCCCEEECCS----SCCHHHHHHHHHHHH
T ss_pred HHHHcCCc------ccCEEEEEcCcccCCCceeEecC----CCCHHHHHHHHHHHH
Confidence 99999999 8999999997 7876666433 257888888887653
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=83.94 Aligned_cols=86 Identities=17% Similarity=0.051 Sum_probs=67.2
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHh---cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEK---LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~---~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
.+||.|| ++||++|+...|.+.++++++.+ .++.++.|..+. +.++++
T Consensus 136 ~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 186 (226)
T 1a8l_A 136 VRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE----------------------------YPEWAD 186 (226)
T ss_dssp EEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG----------------------------CHHHHH
T ss_pred cEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc----------------------------CHHHHH
Confidence 4499999 99999999999999999999874 368888776542 356888
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.||+. .+|+++++ ++|+++..+.+. ...+++.+.|+.+
T Consensus 187 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 187 QYNVM------AVPKIVIQ-VNGEDRVEFEGA----YPEKMFLEKLLSA 224 (226)
T ss_dssp HTTCC------SSCEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred hCCCc------ccCeEEEE-eCCceeEEEcCC----CCHHHHHHHHHHh
Confidence 99999 89997766 699988876543 3456777777654
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=74.66 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=60.4
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
++|++|| ++|||+|+...|.|.++++++. .++.++.|..|. +.++++.||
T Consensus 4 ~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~~~~ 53 (85)
T 1fo5_A 4 VKIELFT-SPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVME----------------------------NPQKAMEYG 53 (85)
T ss_dssp EEEEEEE-CCCSSCCCTHHHHHHHHHHHCS-SSEEEEEEESSS----------------------------SCCTTTSTT
T ss_pred eEEEEEe-CCCCCchHHHHHHHHHHHHHcC-CceEEEEEECCC----------------------------CHHHHHHCC
Confidence 6789999 8999999999999999998886 368888888763 124567788
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+. .+|++++ ||++ ...+. .+.+++.+.|+.
T Consensus 54 v~------~~Pt~~~---~G~~--~~~G~----~~~~~l~~~l~~ 83 (85)
T 1fo5_A 54 IM------AVPTIVI---NGDV--EFIGA----PTKEALVEAIKK 83 (85)
T ss_dssp TC------CSSEEEE---TTEE--ECCSS----SSSHHHHHHHHH
T ss_pred Cc------ccCEEEE---CCEE--eeecC----CCHHHHHHHHHH
Confidence 88 8899888 8988 32221 245666666654
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=87.61 Aligned_cols=93 Identities=5% Similarity=0.074 Sum_probs=70.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK--LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~--~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+++||.|| ++||++|+...|.+.++++++++ .++.++.|.++. |.+.++++
T Consensus 31 ~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~--------------------------~~~~~l~~ 83 (244)
T 3q6o_A 31 SAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE--------------------------ETNSAVCR 83 (244)
T ss_dssp SEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS--------------------------TTTHHHHH
T ss_pred CeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc--------------------------hhhHHHHH
Confidence 48999999 99999999999999999999986 468898888753 13468999
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEE-EEEeccCCCCCCHHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQ-HSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~-~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.|++. .+|++++++..+++- ...+. ..+.+.+++.+.|..+.
T Consensus 84 ~~~v~------~~Pt~~~~~~g~~~~~g~~~~--~~g~~~~~l~~~i~~~l 126 (244)
T 3q6o_A 84 DFNIP------GFPTVRFFXAFTXNGSGAVFP--VAGADVQTLRERLIDAL 126 (244)
T ss_dssp HTTCC------SSSEEEEECTTCCSSSCEECC--CTTCCHHHHHHHHHHHH
T ss_pred HcCCC------ccCEEEEEeCCCcCCCCeeEe--cCCCCHHHHHHHHHHHH
Confidence 99999 899999998633311 11111 12357888888887653
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-08 Score=82.03 Aligned_cols=107 Identities=7% Similarity=-0.091 Sum_probs=67.9
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHH---HHHHHHHHHhcCcEEEEEeCCCHHHHH-HHHHHhhhcCCCCCccc
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITA---FSDRYTEFEKLNTEILGVSTDSVFSHL-AWVQTDRKSGGLGDLKY 174 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~---L~~~~~~~~~~gv~vv~VS~d~~~~~~-~~~~~~~~~~~~~~~~f 174 (271)
.+......|| +|||.|| ++||++|+...+. ..++.+.+.+ ++.+|-|..|...+.. .+.+
T Consensus 31 a~~~A~~~~K-pVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~------------- 94 (173)
T 3ira_A 31 AFEKARKENK-PVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMT------------- 94 (173)
T ss_dssp HHHHHHHHTC-CEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHH-------------
T ss_pred HHHHHHHhCC-CEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHH-------------
Confidence 4555566777 9999999 9999999987763 2344555543 5677777666432221 1111
Q ss_pred ceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec-cCC---CCCCHHHHHHHHHHH
Q 024201 175 PLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN-NLA---IGRSVDETLRTLQAL 235 (271)
Q Consensus 175 ~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~-~~~---~~~~~~e~l~~l~~l 235 (271)
.+...+|+. .+|+++++|++|++++...+ +.. ......++|+.+..+
T Consensus 95 --------~~q~~~gv~------g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~ 145 (173)
T 3ira_A 95 --------VCQIILGRG------GWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEI 145 (173)
T ss_dssp --------HHHHHHSCC------CSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHH
T ss_pred --------HHHHHcCCC------CCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHH
Confidence 122336888 89999999999999987322 111 113566677666543
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.7e-08 Score=83.85 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=68.6
Q ss_pred cccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh---cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 104 DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK---LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 104 d~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~---~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
++.|+ ++|++|| ++|||+|+...|.+.+++.+++. .++.+..|..+.
T Consensus 135 ~~~~~-~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~---------------------------- 184 (243)
T 2hls_A 135 SLKGR-VHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE---------------------------- 184 (243)
T ss_dssp HCCSC-EEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT----------------------------
T ss_pred HcCCC-cEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc----------------------------
Confidence 45666 7888999 99999999999999999999852 467777775542
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+.++++.|++. .+|+++| ||++++. + ....+++++.|+....
T Consensus 185 ~~~~~~~~~V~------~vPt~~i---~G~~~~~--G----~~~~~~l~~~l~~~~~ 226 (243)
T 2hls_A 185 NPDIADKYGVM------SVPSIAI---NGYLVFV--G----VPYEEDFLDYVKSAAE 226 (243)
T ss_dssp CHHHHHHTTCC------SSSEEEE---TTEEEEE--S----CCCHHHHHHHHHHHHT
T ss_pred CHHHHHHcCCe------eeCeEEE---CCEEEEe--C----CCCHHHHHHHHHHHhh
Confidence 34688899999 8999888 7987632 2 2467888888886643
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.8e-10 Score=85.05 Aligned_cols=86 Identities=23% Similarity=0.357 Sum_probs=65.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++||+.|+...+.|.++.++++ ++.++.|.+|. +.++.
T Consensus 35 ~~~-~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~ 82 (130)
T 1wmj_A 35 AGK-VVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE----------------------------LKEVA 82 (130)
T ss_dssp TTC-BCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT----------------------------SGGGH
T ss_pred cCC-EEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc----------------------------hHHHH
Confidence 466 8999999 8999999999999999998886 68888776642 34678
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|+++++ ++|+++....+ .+.+++.+.|+.+
T Consensus 83 ~~~~v~------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~l~~~ 120 (130)
T 1wmj_A 83 EKYNVE------AMPTFLFI-KDGAEADKVVG-----ARKDDLQNTIVKH 120 (130)
T ss_dssp HHHTCC------SSCCCCBC-TTTTCCBCCCT-----TCTTTHHHHHHHH
T ss_pred HHcCCC------ccceEEEE-eCCeEEEEEeC-----CCHHHHHHHHHHH
Confidence 899998 88987666 89998876543 1234555555544
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.1e-09 Score=83.25 Aligned_cols=85 Identities=11% Similarity=0.185 Sum_probs=59.2
Q ss_pred EEEEEEecCCC--CCChHHHHHHHHHHHHHHHhcCcE--EEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 110 YVILFFYPLDF--TFVCPTEITAFSDRYTEFEKLNTE--ILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 110 ~vvL~F~~~t~--Cp~C~~~l~~L~~~~~~~~~~gv~--vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.+||+|| +.| |++|+...|.|.++++++ + ++. ++.|.+|. +.+++
T Consensus 36 ~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~----------------------------~~~la 84 (142)
T 2es7_A 36 DGVILLS-SDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQ----------------------------SEAIG 84 (142)
T ss_dssp SEEEEEC-CCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHH----------------------------HHHHH
T ss_pred CEEEEEE-CCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCC----------------------------CHHHH
Confidence 4777777 666 999999999999999998 3 577 77776542 24688
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.|||. .+|+++++ ++|+++.+..+. .+.+++.+.|+.+.
T Consensus 85 ~~~~V~------~iPT~~~f-k~G~~v~~~~G~----~~~~~l~~~i~~~l 124 (142)
T 2es7_A 85 DRFNVR------RFPATLVF-TDGKLRGALSGI----HPWAELLTLMRSIV 124 (142)
T ss_dssp HTTTCC------SSSEEEEE-SCC----CEESC----CCHHHHHHHHHHHH
T ss_pred HhcCCC------cCCeEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHHh
Confidence 899999 89999999 899999886543 34677777777653
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=6.2e-08 Score=67.14 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=49.8
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
+.|.|| ++||++|+...|.+.++.+++.. ++.++.|. +.++++.||+
T Consensus 2 ~~v~f~-a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~-------------------------------~~~~~~~~~v 48 (77)
T 1ilo_A 2 MKIQIY-GTGCANCQMLEKNAREAVKELGI-DAEFEKIK-------------------------------EMDQILEAGL 48 (77)
T ss_dssp EEEEEE-CSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC-------------------------------SHHHHHHHTC
T ss_pred cEEEEE-cCCChhHHHHHHHHHHHHHHcCC-ceEEEEec-------------------------------CHHHHHHCCC
Confidence 358899 89999999999999999888753 46666553 3467888999
Q ss_pred ccCCCCccceEEEEEcCCCcEEEE
Q 024201 191 LIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 191 ~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
. .+|++++ ||+++..
T Consensus 49 ~------~~Pt~~~---~G~~~~~ 63 (77)
T 1ilo_A 49 T------ALPGLAV---DGELKIM 63 (77)
T ss_dssp S------SSSCEEE---TTEEEEC
T ss_pred C------cCCEEEE---CCEEEEc
Confidence 8 8999887 8998765
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-08 Score=88.33 Aligned_cols=91 Identities=11% Similarity=0.096 Sum_probs=68.0
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|+ +|||+|| ++||++|+...|.|.+++.+|. ++.|+.|.++. . .+++
T Consensus 133 ~k-~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~----------~-------------------~l~~ 179 (245)
T 1a0r_P 133 IT-TIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN----------T-------------------GAGD 179 (245)
T ss_dssp TC-EEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH----------H-------------------CCTT
T ss_pred CC-EEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc----------H-------------------HHHH
Confidence 55 8999999 9999999999999999999986 58888886531 1 1234
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCC-C--CCHHHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAI-G--RSVDETLRTLQALQY 237 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~-~--~~~~e~l~~l~~l~~ 237 (271)
.|++. .+|+++|+ ++|+++...++.... + ...+++.+.|.....
T Consensus 180 ~~~I~------~~PTll~~-~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~ 226 (245)
T 1a0r_P 180 RFSSD------VLPTLLVY-KGGELLSNFISVTEQLAEEFFTGDVESFLNEYGL 226 (245)
T ss_dssp SSCTT------TCSEEEEE-ETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTC
T ss_pred HCCCC------CCCEEEEE-ECCEEEEEEeCCcccccccccHHHHHHHHHHcCC
Confidence 67888 89998888 599999987764332 2 345666666665443
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=75.88 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=60.9
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.+++||+|+ ++|||+|+...|.|.++.++ .++.++-|.+|... |...+++..
T Consensus 24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVde~r------------------------~~Sn~IA~~ 75 (112)
T 3iv4_A 24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQQER------------------------DLSDYIAKK 75 (112)
T ss_dssp CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGGGGH------------------------HHHHHHHHH
T ss_pred CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEeecCc------------------------hhhHHHHHH
Confidence 348999999 99999999999999998874 36888888776311 123579999
Q ss_pred hCCccCCCCcc-ceEEEEEcCCCcEEEEEec
Q 024201 188 YGVLIPDQGIA-LRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 188 ygv~~~~~g~~-~P~~~lID~~G~V~~~~~~ 217 (271)
|||. + .|+++|+ +||++++....
T Consensus 76 ~~V~------h~sPq~il~-k~G~~v~~~SH 99 (112)
T 3iv4_A 76 TNVK------HESPQAFYF-VNGEMVWNRDH 99 (112)
T ss_dssp HTCC------CCSSEEEEE-ETTEEEEEEEG
T ss_pred hCCc------cCCCeEEEE-ECCEEEEEeec
Confidence 9999 6 8999999 89999999643
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-08 Score=85.95 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=68.4
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| ++||++|+...|.+.++++++++ .+.++.|.+|. +.+.++++.|
T Consensus 36 ~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~-~~~~~~v~~d~--------------------------~~~~~l~~~~ 87 (298)
T 3ed3_A 36 YTSLVEFY-APWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDL--------------------------NKNKALCAKY 87 (298)
T ss_dssp SCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTS--------------------------TTTHHHHHHT
T ss_pred CeEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CcEEEEEEccC--------------------------ccCHHHHHhC
Confidence 48999999 99999999999999999999975 38899998873 1247899999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEe-------------ccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTI-------------NNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~-------------~~~~~~~~~~e~l~~l~~l 235 (271)
|+. .+|++++++. |+++.... ....-.+..+++++.+...
T Consensus 88 ~I~------~~Pt~~~~~~-g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~ 140 (298)
T 3ed3_A 88 DVN------GFPTLMVFRP-PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR 140 (298)
T ss_dssp TCC------BSSEEEEEEC-CCC-------------CCCEEEECCSCCSHHHHHHHHHTT
T ss_pred CCC------ccceEEEEEC-CceeecccccccccccccccceeecCCcCHHHHHHHHHHh
Confidence 999 8999999975 55321111 1112246788888877543
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.9e-08 Score=73.77 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=64.7
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
++||+|| ++||++|+...|.|.++.+++. ++.++-|.+|. . ++.|+
T Consensus 25 ~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~------------------~-------------~~~~~ 70 (118)
T 3evi_A 25 WVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNS------------------C-------------IQHYH 70 (118)
T ss_dssp EEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGG------------------T-------------STTCC
T ss_pred eEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHH------------------h-------------HHHCC
Confidence 8999999 9999999999999999999986 58888887653 0 24578
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCC---CCHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG---RSVDETLRTLQ 233 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~---~~~~e~l~~l~ 233 (271)
+. .+|+++++ +||+++....+....+ -..+++...|.
T Consensus 71 v~------~~PT~~~f-k~G~~v~~~~G~~~~gg~~~~~~~le~~L~ 110 (118)
T 3evi_A 71 DN------CLPTIFVY-KNGQIEAKFIGIIECGGINLKLEELEWKLA 110 (118)
T ss_dssp GG------GCSEEEEE-ETTEEEEEEESTTTTTCSSCCHHHHHHHHH
T ss_pred CC------CCCEEEEE-ECCEEEEEEeChhhhCCCCCCHHHHHHHHH
Confidence 88 89998888 7999999988754433 24455555543
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-09 Score=80.43 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=60.5
Q ss_pred eeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceE
Q 024201 98 INVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLI 177 (271)
Q Consensus 98 ~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l 177 (271)
..+.|+++.|+ .+||.|| ++|||+|+...|.|.++.++++ .|-+..|. .
T Consensus 3 ~~~~la~~~~k-~~vV~F~-A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~-------------------~----- 51 (106)
T 3kp8_A 3 LAVGLAAHLRQ-IGGTMYG-AYWCPHCQDQKELFGAAFDQVP-----YVECSPNG-------------------P----- 51 (106)
T ss_dssp HHHHHHHHHHH-HTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-----EEESCTTC-------------------T-----
T ss_pred HhhHHHHhcCC-CEEEEEE-CCCCHHHHHHHHHHHHHHHhCC-----EEEEeccc-------------------c-----
Confidence 35677888887 7889999 9999999999999988876553 22222211 0
Q ss_pred EcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 178 ADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 178 ~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.+.+.++++.|||. .+|+++| +|++ +.+ ....+++.+.+
T Consensus 52 ~~~~~~l~~~~~V~------~~PT~~i---~G~~---~~G----~~~~~~l~~~~ 90 (106)
T 3kp8_A 52 GTPQAQECTEAGIT------SYPTWII---NGRT---YTG----VRSLEALAVAS 90 (106)
T ss_dssp TSCCCHHHHHTTCC------SSSEEEE---TTEE---EES----CCCHHHHHHHH
T ss_pred cchhHHHHHHcCCe------EeCEEEE---CCEE---ecC----CCCHHHHHHHh
Confidence 02457899999999 8999665 7874 222 24556655544
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-07 Score=79.03 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=68.2
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
++ ++||+|| ++||++|+...|.+.++++++++++ +.++.|..+. +.++
T Consensus 147 ~~-~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l 196 (241)
T 3idv_A 147 AD-IILVEFY-APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA----------------------------ETDL 196 (241)
T ss_dssp CS-EEEEEEE-CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT----------------------------CHHH
T ss_pred CC-eEEEEEE-CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC----------------------------CHHH
Confidence 44 8999999 9999999999999999999998654 7777776553 3568
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++.||+. ..|++++++ +|+++. +.+ ....+++++.|+..
T Consensus 197 ~~~~~v~------~~Pt~~~~~-~g~~~~-~~g----~~~~~~l~~~l~~~ 235 (241)
T 3idv_A 197 AKRFDVS------GYPTLKIFR-KGRPYD-YNG----PREKYGIVDYMIEQ 235 (241)
T ss_dssp HHHTTCC------SSSEEEEEE-TTEEEE-CCS----CCSHHHHHHHHHHH
T ss_pred HHHcCCc------ccCEEEEEE-CCeEEE-ecC----CCCHHHHHHHHHhh
Confidence 9999999 899999886 687765 222 35678888887654
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=84.77 Aligned_cols=84 Identities=11% Similarity=0.076 Sum_probs=65.1
Q ss_pred cEEEEEEecCCCCCChHHHHHH-------HHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 109 KYVILFFYPLDFTFVCPTEITA-------FSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~-------L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+++||.|| ++||+ |+...|. +.++++++++.++.++.|.++. +
T Consensus 29 ~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~----------------------------~ 78 (350)
T 1sji_A 29 DVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK----------------------------E 78 (350)
T ss_dssp SEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT----------------------------T
T ss_pred CeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC----------------------------C
Confidence 48999999 99999 9888888 7888888877678888887753 2
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.++++.|||. ..|+++++ ++|++. .+.+ .+..+++.+.++.
T Consensus 79 ~~l~~~~~v~------~~Pt~~~~-~~g~~~-~~~G----~~~~~~l~~~i~~ 119 (350)
T 1sji_A 79 AKLAKKLGFD------EEGSLYVL-KGDRTI-EFDG----EFAADVLVEFLLD 119 (350)
T ss_dssp HHHHHHHTCC------STTEEEEE-ETTEEE-EECS----CCCHHHHHHHHHT
T ss_pred HHHHHhcCCC------ccceEEEE-ECCcEE-EecC----CCCHHHHHHHHHH
Confidence 4689999999 89999999 789843 3322 3567777776653
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-07 Score=84.27 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=69.6
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-----cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-----LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-----~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
++ ++||.|| +.||++|+...|.+.++++++++ .++.++.|.++ .+
T Consensus 22 ~~-~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~----------------------------~~ 71 (382)
T 2r2j_A 22 AD-VALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD----------------------------QH 71 (382)
T ss_dssp CS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETT----------------------------TC
T ss_pred CC-eEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECC----------------------------cc
Confidence 44 8999999 99999999999999999999963 23777777654 24
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.++++.||+. ..|+++++ ++|+++.+.+.+ .+..+++++.++..
T Consensus 72 ~~l~~~~~v~------~~Pt~~~f-~~G~~~~~~~~G---~~~~~~l~~~i~~~ 115 (382)
T 2r2j_A 72 SDIAQRYRIS------KYPTLKLF-RNGMMMKREYRG---QRSVKALADYIRQQ 115 (382)
T ss_dssp HHHHHHTTCC------EESEEEEE-ETTEEEEEECCS---CCSHHHHHHHHHHH
T ss_pred HHHHHhcCCC------cCCEEEEE-eCCcEeeeeecC---cchHHHHHHHHHHh
Confidence 6789999999 89998877 689987642221 35678888887755
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-08 Score=82.32 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=65.1
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|+ ++||+|| ++||++|+...|.|.+++++|. ++.|+.|.++ . ..+++
T Consensus 120 ~k-~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~-~----------------------------~~l~~ 166 (217)
T 2trc_P 120 VT-TIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS-N----------------------------TGAGD 166 (217)
T ss_dssp TC-EEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH-H----------------------------HTCST
T ss_pred Cc-EEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC-c----------------------------HHHHH
Confidence 45 8999999 9999999999999999999885 6888888654 0 11334
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCC---CCCHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAI---GRSVDETLRTLQA 234 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~---~~~~~e~l~~l~~ 234 (271)
.|++. .+|+++++ ++|+++....+.... .-..+++.+.|..
T Consensus 167 ~~~i~------~~PTl~~~-~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~ 210 (217)
T 2trc_P 167 RFSSD------VLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNE 210 (217)
T ss_dssp TSCGG------GCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred HCCCC------CCCEEEEE-ECCEEEEEEeCCcccCcccCCHHHHHHHHHH
Confidence 57887 89999999 599999887654332 1224566665553
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.2e-08 Score=91.86 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
|+ ++||+|| ++||++|+...|.+.++++++++. ++.++.|..+.. ++.
T Consensus 370 ~k-~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-----------------------------~~~ 418 (481)
T 3f8u_A 370 NK-DVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-----------------------------DVP 418 (481)
T ss_dssp TC-EEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-----------------------------CCC
T ss_pred CC-cEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-----------------------------hhH
Confidence 55 8999999 999999999999999999999865 577776766430 233
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcE-EEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVI-QHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V-~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|++++++++|++ +..+.+ ....+++++.|+..
T Consensus 419 ~~~~v~------~~Pt~~~~~~~~~~~~~~~~G----~~~~~~l~~~l~~~ 459 (481)
T 3f8u_A 419 SPYEVR------GFPTIYFSPANKKLNPKKYEG----GRELSDFISYLQRE 459 (481)
T ss_dssp TTCCCC------SSSEEEEECTTCTTSCEECCS----CCSHHHHHHHHHHH
T ss_pred hhCCCc------ccCEEEEEeCCCeEeeeEeCC----CCCHHHHHHHHHHh
Confidence 567888 89999999988874 333222 35688888887754
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-07 Score=86.64 Aligned_cols=87 Identities=8% Similarity=0.148 Sum_probs=69.9
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| +.||++|+...|.+.++.+++++.++.++.|.++. +.++++.|
T Consensus 32 ~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~----------------------------~~~l~~~~ 82 (504)
T 2b5e_A 32 DLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE----------------------------NQDLCMEH 82 (504)
T ss_dssp SEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT----------------------------CHHHHHHT
T ss_pred CeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC----------------------------CHHHHHhc
Confidence 48999999 99999999999999999999987678888887653 35689999
Q ss_pred CCccCCCCccceEEEEEcCCCcE--EEEEeccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVI--QHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V--~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|+. ..|+++++. +|++ +..+.+ .+..+++.+.++..
T Consensus 83 ~v~------~~Pt~~~~~-~g~~~~~~~~~G----~~~~~~l~~~l~~~ 120 (504)
T 2b5e_A 83 NIP------GFPSLKIFK-NSDVNNSIDYEG----PRTAEAIVQFMIKQ 120 (504)
T ss_dssp TCC------SSSEEEEEE-TTCTTCEEECCS----CCSHHHHHHHHHHH
T ss_pred CCC------cCCEEEEEe-CCccccceeecC----CCCHHHHHHHHHHh
Confidence 999 899999995 6775 444322 35678888877654
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.51 E-value=6.6e-07 Score=75.27 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=61.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|+.|| ++||++|+...|.+.+++.++. ++.++.|..+. +.++++.||
T Consensus 138 ~~~v~F~-a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~----------------------------~~~l~~~~~ 186 (229)
T 2ywm_A 138 IEIWVFV-TTSCGYCPSAAVMAWDFALAND--YITSKVIDASE----------------------------NQDLAEQFQ 186 (229)
T ss_dssp EEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGG----------------------------CHHHHHHTT
T ss_pred eEEEEEE-CCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCC----------------------------CHHHHHHcC
Confidence 5578899 9999999999999999998873 68888776542 356889999
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+. .+|++++ ||++ ..+.+. ...+++.+.|+.+.
T Consensus 187 v~------~~Pt~~~---~G~~-~~~~G~----~~~~~l~~~l~~~~ 219 (229)
T 2ywm_A 187 VV------GVPKIVI---NKGV-AEFVGA----QPENAFLGYIMAVY 219 (229)
T ss_dssp CC------SSSEEEE---GGGT-EEEESC----CCHHHHHHHHHHHH
T ss_pred Cc------ccCEEEE---CCEE-EEeeCC----CCHHHHHHHHHHHh
Confidence 98 8999888 7884 333332 45667777776543
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-07 Score=85.11 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=69.3
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| ++||++|+...|.+.+++++++++ +.++.|.++. +.++++.|
T Consensus 22 ~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~----------------------------~~~l~~~~ 71 (481)
T 3f8u_A 22 GLMLVEFF-APWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA----------------------------NTNTCNKY 71 (481)
T ss_dssp SEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT----------------------------CHHHHHHT
T ss_pred CeEEEEEE-CCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC----------------------------CHHHHHhc
Confidence 48999999 999999999999999999999864 7777777653 35789999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|+. ..|+.+++ ++|+++..+.+ ....+++++.++..
T Consensus 72 ~v~------~~Ptl~~~-~~g~~~~~~~G----~~~~~~l~~~~~~~ 107 (481)
T 3f8u_A 72 GVS------GYPTLKIF-RDGEEAGAYDG----PRTADGIVSHLKKQ 107 (481)
T ss_dssp TCC------EESEEEEE-ETTEEEEECCS----CSSHHHHHHHHHHH
T ss_pred CCC------CCCEEEEE-eCCceeeeecC----ccCHHHHHHHHHhh
Confidence 999 89988888 78987766433 25677888777644
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9.3e-08 Score=72.81 Aligned_cols=89 Identities=10% Similarity=0.043 Sum_probs=61.7
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~-~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
.+||+|| +.||+.|+..-+.+...++... .+.+.++-|.++.. ....++..|
T Consensus 20 ~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~--------------------------~~~~la~~~ 72 (116)
T 3dml_A 20 LRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDP--------------------------LPPGLELAR 72 (116)
T ss_dssp EEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSC--------------------------CCTTCBCSS
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCC--------------------------CchhHHHHC
Confidence 6999999 9999999988765544433211 12366666766641 113455667
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++. .+|++++++ ||+.+.+..+. ...+++++.|+.+.
T Consensus 73 ~V~------g~PT~i~f~-~G~ev~Ri~G~----~~~~~f~~~L~~~l 109 (116)
T 3dml_A 73 PVT------FTPTFVLMA-GDVESGRLEGY----PGEDFFWPMLARLI 109 (116)
T ss_dssp CCC------SSSEEEEEE-TTEEEEEEECC----CCHHHHHHHHHHHH
T ss_pred CCC------CCCEEEEEE-CCEEEeeecCC----CCHHHHHHHHHHHH
Confidence 888 899999998 99999987653 34577888777653
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.9e-07 Score=74.23 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=36.1
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 148 (271)
.+.+.+-.++ ++|+.|| ..|||+|....+.|.++.+++.+ +.++.+
T Consensus 14 ~~~~G~~~a~-v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~ 59 (175)
T 3gyk_A 14 APVLGNPEGD-VTVVEFF-DYNCPYCRRAMAEVQGLVDADPN--VRLVYR 59 (175)
T ss_dssp SCEEECTTCS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEE
T ss_pred CCCcCCCCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHhCCC--EEEEEE
Confidence 4556666677 8889999 89999999999999999988754 555543
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.1e-06 Score=66.78 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=64.4
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.+| +++|+|+ +.||+.|+..-... .++.+.++ +++.+|-|.+|+.+ ..
T Consensus 41 ~~K-~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l~-~~fv~v~~d~~~~~--------------------------~~ 91 (153)
T 2dlx_A 41 QNK-WLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYHDSEE--------------------------GQ 91 (153)
T ss_dssp HTC-EEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEESSSHH--------------------------HH
T ss_pred cCC-eEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHHH-cCeEEEEEecCCHh--------------------------HH
Confidence 366 9999999 99999998775443 23333332 26777777775421 13
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKE-GVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~-G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+.+.|++. ..|++++||++ |+.+... + +.+.+++++.|+.+.
T Consensus 92 ~l~~~y~v~------~~P~~~fld~~~G~~l~~~-~----g~~~~~fl~~L~~~l 135 (153)
T 2dlx_A 92 RYIQFYKLG------DFPYVSILDPRTGQKLVEW-H----QLDVSSFLDQVTGFL 135 (153)
T ss_dssp HHHHHHTCC------SSSEEEEECTTTCCCCEEE-S----SCCHHHHHHHHHHHH
T ss_pred HHHHHcCCC------CCCEEEEEeCCCCcEeeec-C----CCCHHHHHHHHHHHH
Confidence 455788888 89999999999 8776663 2 257899999988764
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-06 Score=69.15 Aligned_cols=103 Identities=8% Similarity=0.009 Sum_probs=70.7
Q ss_pred EEEEEEecC-------CCCCChHHHHHHHHHHHHHHHh----cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 110 YVILFFYPL-------DFTFVCPTEITAFSDRYTEFEK----LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 110 ~vvL~F~~~-------t~Cp~C~~~l~~L~~~~~~~~~----~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
++||.|| + .||++|+...|.|.++.+++.. ..+.|.-|.+|
T Consensus 39 ~vvV~F~-A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d--------------------------- 90 (178)
T 3ga4_A 39 FNILYIT-MRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVN--------------------------- 90 (178)
T ss_dssp EEEEEEE-CCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT---------------------------
T ss_pred cEEEEEe-CCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECc---------------------------
Confidence 7999999 6 4999999999999999999973 23444445443
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEE----------EEEeccCC--CCCCHHHHHHHHHHHHHhhhCCCccc
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQ----------HSTINNLA--IGRSVDETLRTLQALQYVQENPDEVC 246 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~----------~~~~~~~~--~~~~~~e~l~~l~~l~~~~~~~~~~~ 246 (271)
.+.++++.|||. .+|+.+++-+.+... ... +... .++.++++.+.|..- ...+..+.-
T Consensus 91 -~~~~la~~~~I~------siPtl~~F~~g~~~~~~~~~~~~~~~~~-y~~~~~~~~~ae~la~fi~~~--t~~~i~I~r 160 (178)
T 3ga4_A 91 -EVPQLVKDLKLQ------NVPHLVVYPPAESNKQSQFEWKTSPFYQ-YSLVPENAENTLQFGDFLAKI--LNISITVPQ 160 (178)
T ss_dssp -TCHHHHHHTTCC------SSCEEEEECCCCGGGGGGCCTTTSCCEE-ECCCGGGTTCHHHHHHHHHHH--HTCCCCCCC
T ss_pred -cCHHHHHHcCCC------CCCEEEEEcCCCCCCccccccccCCcce-eecccCCCcCHHHHHHHHHHh--cCCCccccC
Confidence 357899999999 899999995443322 011 1111 357888888888643 334445566
Q ss_pred CCCC
Q 024201 247 PAGW 250 (271)
Q Consensus 247 p~~~ 250 (271)
|.+|
T Consensus 161 p~ny 164 (178)
T 3ga4_A 161 AFNV 164 (178)
T ss_dssp SCC-
T ss_pred CCCh
Confidence 7776
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.5e-07 Score=87.92 Aligned_cols=91 Identities=10% Similarity=0.136 Sum_probs=70.3
Q ss_pred cccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 102 LSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+.++.|+ +++|.|| ++||++|+..+|.|.++++++++ ++.++.|.++. +
T Consensus 450 ~~~~~~~-~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~----------------------------~ 498 (780)
T 3apo_A 450 FPASDKE-PWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTI----------------------------H 498 (780)
T ss_dssp SCTTCCS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------C
T ss_pred HHHcCCC-eEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------C
Confidence 4455666 8999999 99999999999999999999975 58888887763 1
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
..+++.||+. ..|+++++ ++|++ +.+.+ ....+++.+.++.+
T Consensus 499 ~~~~~~~~v~------~~Pt~~~~-~~g~~-~~~~g----~~~~~~l~~fi~~~ 540 (780)
T 3apo_A 499 EGLCNMYNIQ------AYPTTVVF-NQSSI-HEYEG----HHSAEQILEFIEDL 540 (780)
T ss_dssp HHHHHHTTCC------SSSEEEEE-ETTEE-EEECS----CSCHHHHHHHHHHH
T ss_pred HHHHHHcCCC------cCCeEEEE-cCCce-eeecC----cccHHHHHHHHHhh
Confidence 3488899998 79999999 46876 44322 23567777777655
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.1e-07 Score=85.82 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=55.6
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-------CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-------NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-------gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
++||+|| ++||++|+.+.|.+.+++++++++ .+.++.|.+|. +.
T Consensus 44 ~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~----------------------------~~ 94 (470)
T 3qcp_A 44 PWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS----------------------------EV 94 (470)
T ss_dssp CEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT----------------------------CH
T ss_pred eEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC----------------------------CH
Confidence 8999999 999999999999999999998743 27888787653 35
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCc
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
++++.|+|. .+|++++++++|.
T Consensus 95 ~la~~y~V~------~~PTlilf~~gg~ 116 (470)
T 3qcp_A 95 DLCRKYDIN------FVPRLFFFYPRDS 116 (470)
T ss_dssp HHHHHTTCC------SSCEEEEEEESSC
T ss_pred HHHHHcCCC------ccCeEEEEECCCc
Confidence 789999999 8999999976553
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.5e-07 Score=89.90 Aligned_cols=91 Identities=10% Similarity=0.024 Sum_probs=71.2
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++||++|+...|.+.++++++++ ++.++.|..+. +.++++.
T Consensus 675 ~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 724 (780)
T 3apo_A 675 KTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQA----------------------------YPQTCQK 724 (780)
T ss_dssp SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CHHHHHH
T ss_pred CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCC----------------------------CHHHHHh
Confidence 348999999 99999999999999999999875 58888887643 2468889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
||+. .+|+++++ ++|+++....+......+.+++.+.|+.+
T Consensus 725 ~~v~------~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~ 765 (780)
T 3apo_A 725 AGIK------AYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGK 765 (780)
T ss_dssp TTCC------SSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred cCCC------cCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHH
Confidence 9998 89999999 78987765544210134678888888765
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.35 E-value=7.2e-07 Score=80.27 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=62.2
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+++++|.|| ++||++|+...|.+.+++++++++ ++.++.|..+. .. ++
T Consensus 267 ~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~------------------~~------------~~ 315 (361)
T 3uem_A 267 KKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA------------------NE------------VE 315 (361)
T ss_dssp TCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTT------------------CB------------CS
T ss_pred CCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCc------------------cc------------hh
Confidence 348999999 999999999999999999999865 46666564432 10 34
Q ss_pred HhCCccCCCCccceEEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKE-GVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~-G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.|++. ..|++++++++ |+....+.+ .+..+++++.|+
T Consensus 316 ~~~v~------~~Pt~~~~~~~~~~~~~~~~G----~~~~~~l~~~l~ 353 (361)
T 3uem_A 316 AVKVH------SFPTLKFFPASADRTVIDYNG----ERTLDGFKKFLE 353 (361)
T ss_dssp SCCCC------SSSEEEEECSSSSCCCEECCS----CSSHHHHHHHHT
T ss_pred hcCCc------ccCeEEEEECCCCcceeEecC----CCCHHHHHHHHH
Confidence 57888 89999999665 555555432 356777777664
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=73.30 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=68.1
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC----CHH-------------HHHHHHH
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD----SVF-------------SHLAWVQ 161 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d----~~~-------------~~~~~~~ 161 (271)
.+.+....|+ ++|+.|| ..|||+|+...+.|.++.+ .++.++.+... .+. ...+|.+
T Consensus 78 ~~~~g~~~~k-~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~ 151 (216)
T 1eej_A 78 MIVYKAPQEK-HVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDD 151 (216)
T ss_dssp SEEECCTTCC-EEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHH
T ss_pred CeeecCCCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHH
Confidence 3455555666 8999999 9999999999999887754 37887766432 111 1122332
Q ss_pred HhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 162 TDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+... ++.........+.+.++++.||+. .+|++|+. ||+++. + ....+++.+.|+.+.
T Consensus 152 ~~~~~-~~~~~~~~~~v~~~~~l~~~~gV~------gtPt~v~~--dG~~~~---G----~~~~~~l~~~l~~~~ 210 (216)
T 1eej_A 152 VMAGK-SVAPASCDVDIADHYALGVQLGVS------GTPAVVLS--NGTLVP---G----YQPPKEMKEFLDEHQ 210 (216)
T ss_dssp HHTTC-CCCCCCCSCCHHHHHHHHHHHTCC------SSSEEECT--TSCEEE---S----CCCHHHHHHHHHHHH
T ss_pred HHhCC-CCChhHHHHHHHHHHHHHHHcCCC------ccCEEEEc--CCeEec---C----CCCHHHHHHHHHHhh
Confidence 22111 110001122234457889999999 89998654 565321 2 134566776666543
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.22 E-value=9.3e-06 Score=73.57 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=64.6
Q ss_pred CcEEEEEEecCCCCCChHHHH------HHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 108 KKYVILFFYPLDFTFVCPTEI------TAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l------~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
.+++||.|| +.||++|...- |.+.++.++++..++.+..|.++. +
T Consensus 30 ~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~----------------------------~ 80 (367)
T 3us3_A 30 YEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK----------------------------D 80 (367)
T ss_dssp CSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT----------------------------T
T ss_pred CCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc----------------------------c
Confidence 348999999 99999984332 577788888876678888787753 3
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.++++.|||. ..|+++++. +|+++ .+. -.+..+.+++.++..
T Consensus 81 ~~l~~~~~V~------~~PTl~~f~-~G~~~-~y~----G~~~~~~i~~~i~~~ 122 (367)
T 3us3_A 81 AAVAKKLGLT------EEDSIYVFK-EDEVI-EYD----GEFSADTLVEFLLDV 122 (367)
T ss_dssp HHHHHHHTCC------STTEEEEEE-TTEEE-ECC----SCCSHHHHHHHHHHH
T ss_pred HHHHHHcCCC------cCceEEEEE-CCcEE-EeC----CCCCHHHHHHHHHHh
Confidence 4789999999 899999995 78874 222 245678888877644
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-06 Score=70.35 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=36.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
.++ ++|+.|| ..|||+|....+.|.++.+++.+ ++.++-+.++
T Consensus 24 ~~~-~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGK-IEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA 66 (195)
T ss_dssp TTC-EEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred CCC-eEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence 355 8999999 89999999999999999888875 6888887775
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.15 E-value=6.2e-06 Score=67.45 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=34.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST 150 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~ 150 (271)
.++ ++|+.|| ..|||+|....+.|.++.+++.+ ++.+.-+.+
T Consensus 24 ~~~-~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (192)
T 3h93_A 24 PGK-IEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA 65 (192)
T ss_dssp TTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred CCC-CEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence 455 8899999 89999999999999998888765 677776655
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-06 Score=83.05 Aligned_cols=86 Identities=10% Similarity=0.186 Sum_probs=60.4
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
++ ++||.|| ++||++|+...|.+.++.++++.. ++.++.|..+. . + .
T Consensus 376 ~k-~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~------------------~---------~--~ 424 (504)
T 2b5e_A 376 KK-DVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE------------------N---------D--V 424 (504)
T ss_dssp TC-CEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG------------------C---------C--C
T ss_pred CC-CEEEEEE-CCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCc------------------c---------c--c
Confidence 44 8999999 999999999999999999998733 45555555421 0 0 1
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcE--EEEEeccCCCCCCHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVI--QHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V--~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+ |++. .+|+++++ ++|+. +..+.+ .+..+++++.|+..
T Consensus 425 ~~-~~v~------~~Pt~~~~-~~G~~~~~~~~~G----~~~~~~l~~~i~~~ 465 (504)
T 2b5e_A 425 RG-VVIE------GYPTIVLY-PGGKKSESVVYQG----SRSLDSLFDFIKEN 465 (504)
T ss_dssp SS-CCCS------SSSEEEEE-CCTTSCCCCBCCS----CCCHHHHHHHHHHH
T ss_pred cc-CCce------ecCeEEEE-eCCceecceEecC----CCCHHHHHHHHHhc
Confidence 12 7787 88999888 78875 333222 35677777777643
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-05 Score=67.97 Aligned_cols=120 Identities=10% Similarity=0.032 Sum_probs=68.9
Q ss_pred EecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC---C--HHH---------HHHHHHHhhh
Q 024201 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD---S--VFS---------HLAWVQTDRK 165 (271)
Q Consensus 100 v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d---~--~~~---------~~~~~~~~~~ 165 (271)
+.+..-.++ .+|+.|+ ..|||+|+...+.+.++.++ .+|.|+.+.+. + ... ..++.+.+..
T Consensus 90 i~~G~~~ak-~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~ 164 (241)
T 1v58_A 90 LLDGKKDAP-VIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 164 (241)
T ss_dssp EEESCTTCS-EEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceECCCCCC-eEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444555 7888888 89999999999998876654 25776655431 1 111 1122233322
Q ss_pred cCCCCCcc--------cceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 166 SGGLGDLK--------YPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 166 ~~~~~~~~--------f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+...++. .....+.+.++++.||+. .+|++++.|.+|++. ...+. ...+++.+.|+..
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~------gtPt~vi~~~~G~~~-~~~G~----~~~~~L~~~l~~~ 231 (241)
T 1v58_A 165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGAN------VTPAIYYMSKENTLQ-QAVGL----PDQKTLNIIMGNK 231 (241)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCC------SSCEEEEEETTTEEE-EEESS----CCHHHHHHHTTC-
T ss_pred HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCEE-EecCC----CCHHHHHHHHHHH
Confidence 22111111 000122346678899999 899999999899763 32221 3466777766543
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.03 E-value=8.8e-06 Score=56.96 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=47.1
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
+++|| ++|||+|+...+.|.++.+++ |+.+..+.+|.. ..+.++++.||+.
T Consensus 4 ~~~f~-~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~v~~~-------------------------~~~~~~~~~~gv~ 54 (80)
T 2k8s_A 4 KAIFY-HAGCPVCVSAEQAVANAIDPS---KYTVEIVHLGTD-------------------------KARIAEAEKAGVK 54 (80)
T ss_dssp EEEEE-ECSCHHHHHHHHHHHHHSCTT---TEEEEEEETTTC-------------------------SSTHHHHHHHTCC
T ss_pred eEEEe-CCCCCchHHHHHHHHHHHHhc---CCeEEEEEecCC-------------------------hhhHHHHHHcCCC
Confidence 56777 899999999999988776543 566666665530 0235677889998
Q ss_pred cCCCCccceEEEEEcCCCcEEEE
Q 024201 192 IPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.+|++++ ||+++..
T Consensus 55 ------~vPt~~i---~g~~~~~ 68 (80)
T 2k8s_A 55 ------SVPALVI---DGAAFHI 68 (80)
T ss_dssp ------EEEEEEE---TTEEEEE
T ss_pred ------cCCEEEE---CCEEEEe
Confidence 8998776 7887654
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.6e-05 Score=64.19 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=52.3
Q ss_pred ccCCcEEEEEEecCC-CCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 105 YIGKKYVILFFYPLD-FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 105 ~~gkk~vvL~F~~~t-~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
..+. ++|++|| +. ||++|+...|.+.++.+. ..++.++.|.++.++ +.+
T Consensus 20 ~~~~-v~lv~f~-~~~~C~~C~~~~~~~~~la~~--~~~v~~~~vd~~~~~--------------------------~~~ 69 (226)
T 1a8l_A 20 MVNP-VKLIVFV-RKDHCQYCDQLKQLVQELSEL--TDKLSYEIVDFDTPE--------------------------GKE 69 (226)
T ss_dssp CCSC-EEEEEEE-CSSSCTTHHHHHHHHHHHHTT--CTTEEEEEEETTSHH--------------------------HHH
T ss_pred cCCC-eEEEEEe-cCCCCchhHHHHHHHHHHHhh--CCceEEEEEeCCCcc--------------------------cHH
Confidence 3444 6778888 88 999999999999998754 235888877766421 246
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcE
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVI 211 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V 211 (271)
+++.||+. ..|+++++ ++|+.
T Consensus 70 ~~~~~~v~------~~Pt~~~~-~~g~~ 90 (226)
T 1a8l_A 70 LAKRYRID------RAPATTIT-QDGKD 90 (226)
T ss_dssp HHHHTTCC------SSSEEEEE-ETTBC
T ss_pred HHHHcCCC------cCceEEEE-cCCce
Confidence 88899999 89999888 56653
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.9e-05 Score=61.39 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=33.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST 150 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~ 150 (271)
.++ ++|++|| ..+||+|....+.|.++.+++.. +|.+..+.+
T Consensus 24 ~a~-v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (193)
T 2rem_A 24 AGK-IEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA 65 (193)
T ss_dssp TTC-EEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred CCC-eEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence 465 7888888 79999999999999988888754 577776654
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3.7e-05 Score=62.77 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=34.4
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST 150 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~ 150 (271)
.++ ++|+.|| ..|||+|....+.|.++.+++.. ++.+..+.+
T Consensus 21 ~~~-~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 62 (195)
T 2znm_A 21 SGK-IEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV 62 (195)
T ss_dssp SSS-EEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred CCC-cEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence 455 7888899 89999999999999998888764 577777765
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=97.84 E-value=4.1e-05 Score=58.93 Aligned_cols=91 Identities=2% Similarity=-0.103 Sum_probs=63.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.+..++++.|| ++ |..|+...|.|.++.++|+.+ +.++-|.+|. ...++
T Consensus 21 ~~~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~d~----------------------------~~~~a 69 (133)
T 2djk_A 21 SAGIPLAYIFA-ET-AEERKELSDKLKPIAEAQRGV-INFGTIDAKA----------------------------FGAHA 69 (133)
T ss_dssp HTTSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECTTT----------------------------TGGGT
T ss_pred cCCCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEchHH----------------------------hHHHH
Confidence 34448999999 78 899999999999999998753 7777676553 23466
Q ss_pred HHhCCccCCCCcc--ceEEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIA--LRGLFIIDK-EGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 186 ~~ygv~~~~~g~~--~P~~~lID~-~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
..||+. . +|+.+|++. +|+. +.... .-....+++.+.++.+.
T Consensus 70 ~~~gi~------~~~iPtl~i~~~~~g~~-~~~~~--~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 70 GNLNLK------TDKFPAFAIQEVAKNQK-FPFDQ--EKEITFEAIKAFVDDFV 114 (133)
T ss_dssp TTTTCC------SSSSSEEEEECTTTCCB-CCCCS--SSCCCHHHHHHHHHHHH
T ss_pred HHcCCC------cccCCEEEEEecCcCcc-cCCCC--ccccCHHHHHHHHHHHH
Confidence 778988 5 899999974 5776 33211 11234567777777654
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=3e-05 Score=56.97 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=55.2
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.-.|.....+.++|++|+ +.|||+|....+.|.++. +++.+.-|.+|++
T Consensus 6 ~~~l~~~~~~~~~v~~f~-~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~~~------------------------- 54 (100)
T 1wjk_A 6 SGNLSASNRALPVLTLFT-KAPCPLCDEAKEVLQPYK-----DRFILQEVDITLP------------------------- 54 (100)
T ss_dssp CCCCCCSCCCCCEEEEEE-CSSCHHHHHHHHHTSTTS-----SSSEEEEEETTSS-------------------------
T ss_pred chhhhhccCCCCEEEEEe-CCCCcchHHHHHHHHHhh-----hCCeEEEEECCCc-------------------------
Confidence 344444444446788888 899999998888776543 2477777766520
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.+.++++.|| . .+|.+ ++ +|+++. ++ +-+.+++.+.|+
T Consensus 55 -~~~el~~~~g-~------~vP~l-~~--~g~~~~--~~----g~~~~~l~~~l~ 92 (100)
T 1wjk_A 55 -ENSTWYERYK-F------DIPVF-HL--NGQFLM--MH----RVNTSKLEKQLR 92 (100)
T ss_dssp -TTHHHHHHSS-S------SCSEE-EE--SSSEEE--ES----SCCHHHHHHHHH
T ss_pred -chHHHHHHHC-C------CCCEE-EE--CCEEEE--ec----CCCHHHHHHHHH
Confidence 1256778898 7 78965 44 577652 22 234566666665
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=69.07 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=59.8
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++ ..|.+|| +.|||+|+...|.|.++..++. ++.+.-|..+. ..++++
T Consensus 117 ~~-~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~----------------------------~~~~~~ 164 (521)
T 1hyu_A 117 GD-FEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT----------------------------FQNEIT 164 (521)
T ss_dssp SC-EEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT----------------------------CHHHHH
T ss_pred CC-cceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechh----------------------------hHHHHH
Confidence 44 6788888 8999999999999999987764 67776665542 357888
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.||+. .+|++++ ||+++.. + ....+++++.++
T Consensus 165 ~~~i~------svPt~~i---~g~~~~~--G----~~~~~~l~~~l~ 196 (521)
T 1hyu_A 165 ERNVM------GVPAVFV---NGKEFGQ--G----RMTLTEIVAKVD 196 (521)
T ss_dssp HTTCC------SSSEEEE---TTEEEEE--S----CCCHHHHHHHHC
T ss_pred HhCCC------ccCEEEE---CCEEEec--C----CCCHHHHHHHHh
Confidence 99998 8899877 8888754 2 134566666554
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=97.80 E-value=6e-05 Score=52.80 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=47.0
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC--
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG-- 189 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg-- 189 (271)
|++|+ .+|||+|....+.|.++..+++ ++.+.-|.++.. .. ...++.+.||
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~~~-----------------~~-------~~~~l~~~~~~~ 55 (85)
T 1ego_A 3 TVIFG-RSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIRAE-----------------GI-------TKEDLQQKAGKP 55 (85)
T ss_dssp EEEEC-CTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHHHH-----------------TC-------CSHHHHHHTCCC
T ss_pred EEEEe-CCCCCCHHHHHHHHHHHHhcCC--CceEEEEecccC-----------------hH-------HHHHHHHHhCCC
Confidence 56677 8999999999999999887654 788887765420 00 1246788888
Q ss_pred CccCCCCccceEEEEEcCCCcEEE
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQH 213 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~ 213 (271)
+. .+|++| + +|+.+.
T Consensus 56 ~~------~vP~i~-~--~g~~i~ 70 (85)
T 1ego_A 56 VE------TVPQIF-V--DQQHIG 70 (85)
T ss_dssp SC------CSCEEE-E--TTEEEE
T ss_pred Cc------eeCeEE-E--CCEEEE
Confidence 66 789874 4 577653
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=97.78 E-value=2.5e-05 Score=58.24 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=43.3
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
++++ || ++|||+|+...+.|.++..+ +.++-|..+.. ... ...++.+.||
T Consensus 21 ~vv~-f~-a~~C~~C~~~~~~l~~~~~~-----~~~v~v~~~~~--~~~---------------------~~~~l~~~~~ 70 (116)
T 2e7p_A 21 PVVV-FS-KTYCGYCNRVKQLLTQVGAS-----YKVVELDELSD--GSQ---------------------LQSALAHWTG 70 (116)
T ss_dssp SEEE-EE-CTTCHHHHHHHHHHHHHTCC-----CEEEEGGGSTT--HHH---------------------HHHHHHHHHS
T ss_pred CEEE-EE-CCCChhHHHHHHHHHHcCCC-----eEEEEccCCCC--hHH---------------------HHHHHHHHhC
Confidence 4555 88 89999999999888776422 33443333321 000 0146788899
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEE
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
+. .+|++ ++ +|+++...
T Consensus 71 v~------~~Pt~-~~--~g~~v~~~ 87 (116)
T 2e7p_A 71 RG------TVPNV-FI--GGKQIGGC 87 (116)
T ss_dssp CC------SSCEE-EE--TTEEEECH
T ss_pred CC------CcCEE-EE--CCEEECCh
Confidence 98 88988 44 68887653
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00025 Score=56.78 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=37.9
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CcEEEEEeC
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-NTEILGVST 150 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-gv~vv~VS~ 150 (271)
.+.+.+-.++ ++|+.|+ ..+||+|....+.+.++.++|.+. +|+++.+.+
T Consensus 19 ~~~~G~~~a~-v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~ 69 (175)
T 1z6m_A 19 GLHIGESNAP-VKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 69 (175)
T ss_dssp SEEESCTTCS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CcccCCCCCC-eEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence 3455555676 7788888 789999999999999998888433 477777554
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=60.71 Aligned_cols=73 Identities=12% Similarity=0.003 Sum_probs=51.4
Q ss_pred EEEEEEec----CCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 110 YVILFFYP----LDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 110 ~vvL~F~~----~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
+++|.||. +.||+.|...+|.+.++++++.+ ..+.+..|.++ .+.++
T Consensus 22 ~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~----------------------------~~~~l 73 (229)
T 2ywm_A 22 PVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPF----------------------------THKEE 73 (229)
T ss_dssp CEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTT----------------------------TCHHH
T ss_pred CeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCc----------------------------ccHHH
Confidence 45555551 56677888899999999888753 34776666332 35789
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++.|||. ..|+.++++ +|.....+.+
T Consensus 74 ~~~~~v~------~~Ptl~~~~-~~~~~~~~~G 99 (229)
T 2ywm_A 74 TEKYGVD------RVPTIVIEG-DKDYGIRYIG 99 (229)
T ss_dssp HHHTTCC------BSSEEEEES-SSCCCEEEES
T ss_pred HHHcCCC------cCcEEEEEC-CCcccceecC
Confidence 9999999 899999995 5665555434
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0001 Score=61.42 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=60.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-----CHH------------HHHHHHHHhhhcCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-----SVF------------SHLAWVQTDRKSGG 168 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-----~~~------------~~~~~~~~~~~~~~ 168 (271)
.++ ++|+.|| ..|||+|+...+.|.++.+ .|+.++.+... +.. ...+|.+.+.. .
T Consensus 85 ~~k-~~vv~F~-d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~-~- 156 (211)
T 1t3b_A 85 NEK-HVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKG-N- 156 (211)
T ss_dssp TCS-EEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTT-C-
T ss_pred CCC-EEEEEEE-CCCCHhHHHHHHHHHHHHh----CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcC-C-
Confidence 344 7899999 8999999999998887433 36777654321 110 01122222210 0
Q ss_pred CCCcc---cceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 169 LGDLK---YPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 169 ~~~~~---f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+. .....+.+.++++.||+. .+|++++ .||+.+ .+ ....+++.+.|+..
T Consensus 157 --~~~~~~~~~~v~~~~~l~~~~gV~------gTPt~vi--~nG~~~----~G---~~~~~~l~~~l~~~ 209 (211)
T 1t3b_A 157 --LPKEVKTPNIVKKHYELGIQFGVR------GTPSIVT--STGELI----GG---YLKPADLLRALEET 209 (211)
T ss_dssp --CCSSCCCSSHHHHHHHHHHHHTCC------SSCEEEC--TTSCCC----CS---CCCHHHHHHHHHHC
T ss_pred --CCChHHHHHHHHHHHHHHHHcCCC------cCCEEEE--eCCEEe----cC---CCCHHHHHHHHHhc
Confidence 111 011122346788999999 8999887 578621 11 13567777776643
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=97.68 E-value=6.9e-05 Score=55.97 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=46.7
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|+.|| +.|||+|....+.|.++.+++ |+.+.-|.+|. +.+++..||
T Consensus 30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId~----------------------------d~~l~~~yg 77 (107)
T 2fgx_A 30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINIDG----------------------------NEHLTRLYN 77 (107)
T ss_dssp CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETTT----------------------------CHHHHHHST
T ss_pred cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECCC----------------------------CHHHHHHhC
Confidence 3578888 899999999999999888775 57666666653 234566677
Q ss_pred CccCCCCccceEEEEEcCCCcEEE
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQH 213 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~ 213 (271)
+. +|..+++ .||+++.
T Consensus 78 v~-------VP~l~~~-~dG~~v~ 93 (107)
T 2fgx_A 78 DR-------VPVLFAV-NEDKELC 93 (107)
T ss_dssp TS-------CSEEEET-TTTEEEE
T ss_pred CC-------CceEEEE-ECCEEEE
Confidence 63 6777655 5788773
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=97.68 E-value=5.8e-05 Score=54.12 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=47.5
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
|+.|| +.||++|....+.|.++..++ +.-|.+| .+.+++.+||+.
T Consensus 3 vv~f~-a~~C~~C~~~~~~L~~~~~~~------~~~vdid----------------------------~~~~l~~~~g~~ 47 (87)
T 1ttz_A 3 LTLYQ-RDDCHLCDQAVEALAQARAGA------FFSVFID----------------------------DDAALESAYGLR 47 (87)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHTTCCC------EEEEECT----------------------------TCHHHHHHHTTT
T ss_pred EEEEE-CCCCchHHHHHHHHHHHHHhh------eEEEECC----------------------------CCHHHHHHhCCC
Confidence 67788 899999998888776543221 2223333 345677788874
Q ss_pred cCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 192 IPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+|+.++ .||+++. + .-+.+++.+.|+.+
T Consensus 48 -------vPtl~~--~~G~~v~---g----~~~~~~L~~~l~~~ 75 (87)
T 1ttz_A 48 -------VPVLRD--PMGRELD---W----PFDAPRLRAWLDAA 75 (87)
T ss_dssp -------CSEEEC--TTCCEEE---S----CCCHHHHHHHHHTC
T ss_pred -------cCeEEE--ECCEEEe---C----CCCHHHHHHHHHHH
Confidence 687766 7899874 2 13456676766543
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.001 Score=59.47 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=64.3
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.++|+|+ +.||+.|....+.+.+++++|+++ +.++.|..+.. ....+++.||
T Consensus 137 ~~~v~F~-~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~--------------------------~~~~~~~~fg 188 (361)
T 3uem_A 137 THILLFL-PKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHT--------------------------DNQRILEFFG 188 (361)
T ss_dssp EEEEEEC-CSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSG--------------------------GGHHHHHHTT
T ss_pred cEEEEEE-eCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChH--------------------------HHHHHHHHcC
Confidence 5677888 899999999999999999999864 77777765530 1256788899
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+... ..|+..+++.++....... .....+.+++.+.++...
T Consensus 189 i~~~----~~P~~~~~~~~~~~~ky~~--~~~~~~~~~l~~fi~~~l 229 (361)
T 3uem_A 189 LKKE----ECPAVRLITLEEEMTKYKP--ESEELTAERITEFCHRFL 229 (361)
T ss_dssp CCTT----TCSEEEEEECC--CCEECC--SSCCCCHHHHHHHHHHHH
T ss_pred CCcc----CCccEEEEEcCCcccccCC--CccccCHHHHHHHHHHHh
Confidence 8711 2899999986444322211 122456788888887664
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00091 Score=54.74 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=35.1
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
++ ++|+.|| ..|||+|....+.|.++.+++.+ ++.+.-+.++
T Consensus 24 ~~-v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~ 65 (193)
T 3hz8_A 24 GK-VEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV 65 (193)
T ss_dssp TS-EEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred CC-cEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence 55 8899999 89999999999999998888776 5777777664
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0021 Score=54.80 Aligned_cols=91 Identities=12% Similarity=0.148 Sum_probs=61.3
Q ss_pred CcEEEEEEecC--CCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 108 KKYVILFFYPL--DFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 108 kk~vvL~F~~~--t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
.+++||.|| + .||+ ..|.+.++.+++.. .++.|..|.+|+. + .+.+.++
T Consensus 22 ~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~-----------------g------~~~~~~l 73 (240)
T 2qc7_A 22 SKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDY-----------------G------DKLNMEL 73 (240)
T ss_dssp CSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCS-----------------S------SCCSHHH
T ss_pred CCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcc-----------------c------chhhHHH
Confidence 348999999 8 8988 88889999888874 3577777776530 0 0134678
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCc--EEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGV--IQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~--V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++.|+|... ..|+++++ ++|+ ....+.+ .+..+++.+.|+..
T Consensus 74 ~~~~~V~~~----~~PTl~~f-~~G~~~~~~~y~G----~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 74 SEKYKLDKE----SYPVFYLF-RDGDFENPVPYTG----AVKVGAIQRWLKGQ 117 (240)
T ss_dssp HHHTTCCGG----GCSEEEEE-ETTCSSCCEECCS----CSCHHHHHHHHHHT
T ss_pred HHHcCCCCC----CCCEEEEE-eCCCcCcceeecC----CCCHHHHHHHHHHh
Confidence 899998621 37888888 6777 2333222 35677777777644
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00055 Score=60.02 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=55.5
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.+.+.+..++ ..++.|| +.|||+|+...|.+.++.+++ . -|.+|. .+.+
T Consensus 189 ~~~la~~l~~-~~vV~F~-A~WC~~Ck~l~p~le~lA~~l-----~--~Vd~d~-------------------~d~~--- 237 (291)
T 3kp9_A 189 AVGLAAHLRQ-IGGTMYG-AYWCPHCQDQKELFGAAFDQV-----P--YVECSP-------------------NGPG--- 237 (291)
T ss_dssp HHHHHHHHHH-TTCEEEE-CTTCHHHHHHHHHHGGGGGGS-----C--EEESCS-------------------SCSS---
T ss_pred HHHHHHHhCC-CCEEEEE-CCCCHHHHHHHHHHHHHHHHc-----C--EEEEee-------------------cCch---
Confidence 5566555444 3578899 999999999999998876543 1 122321 0000
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
|.+.+++++||+. ..|+.++ ||+. ..+ .++.+++.+.+
T Consensus 238 ~~~~~la~~~gI~------~vPT~~i---~G~~---~~G----~~~~~~L~~~l 275 (291)
T 3kp9_A 238 TPQAQECTEAGIT------SYPTWII---NGRT---YTG----VRSLEALAVAS 275 (291)
T ss_dssp SCCCHHHHTTTCC------STTEEEE---TTEE---EES----CCCHHHHHHHT
T ss_pred hhHHHHHHHcCCc------ccCeEEE---CCEE---ecC----CCCHHHHHHHH
Confidence 3467899999999 8999555 7863 222 24556665554
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0042 Score=49.51 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=28.8
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 148 (271)
++ ++|+.|+- -.||+|....+.+.++.+++.+ ++.++-+
T Consensus 21 ~~-~~vvEf~d-y~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~ 59 (184)
T 4dvc_A 21 SS-PVVSEFFS-FYCPHCNTFEPIIAQLKQQLPE-GAKFQKN 59 (184)
T ss_dssp SS-CEEEEEEC-TTCHHHHHHHHHHHHHHHTSCT-TCEEEEE
T ss_pred CC-CEEEEEEC-CCCHhHHHHhHHHHHHHhhcCC-ceEEEEE
Confidence 45 77888884 4599999988889888888765 3455544
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0043 Score=52.64 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=46.7
Q ss_pred EEEEEEecCCC--CCChHHHHHHHHHHHHHHHh-cC---cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 110 YVILFFYPLDF--TFVCPTEITAFSDRYTEFEK-LN---TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 110 ~vvL~F~~~t~--Cp~C~~~l~~L~~~~~~~~~-~g---v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
+++|.|| +.| |+.|....+.+.++.+++.. +| +.++-|..| .+.+
T Consensus 27 pv~v~~~-~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d----------------------------~~~~ 77 (243)
T 2hls_A 27 PVEVHVF-LSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRE----------------------------SDSD 77 (243)
T ss_dssp CEEEEEE-ECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETT----------------------------TTHH
T ss_pred CEEEEEE-eCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCC----------------------------cCHH
Confidence 7889999 789 99999999988888877421 12 555444332 3467
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCC
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEG 209 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G 209 (271)
+++.||+. ..|++.++ +|
T Consensus 78 ~~~~~gv~------~~Pt~~i~--~g 95 (243)
T 2hls_A 78 KFSEFKVE------RVPTVAFL--GG 95 (243)
T ss_dssp HHHHTTCC------SSSEEEET--TT
T ss_pred HHHhcCCC------cCCEEEEE--CC
Confidence 89999998 78998887 46
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0047 Score=47.16 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=40.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
|++|+ ..|||+|+...+.|.++ ++.+..|.+|...+..++ ..++.+.+|+.
T Consensus 29 vvvf~-~~~Cp~C~~~~~~L~~~-------~i~~~~vdid~~~~~~~~---------------------~~~l~~~~g~~ 79 (130)
T 2cq9_A 29 VVIFS-KTSCSYCTMAKKLFHDM-------NVNYKVVELDLLEYGNQF---------------------QDALYKMTGER 79 (130)
T ss_dssp EEEEE-CSSCSHHHHHHHHHHHH-------TCCCEEEETTTSTTHHHH---------------------HHHHHHHHSSC
T ss_pred EEEEE-cCCChHHHHHHHHHHHc-------CCCcEEEECcCCcCcHHH---------------------HHHHHHHhCCC
Confidence 33477 89999999877766653 455555666542111111 13567778887
Q ss_pred cCCCCccceEEEEEcCCCcEEEE
Q 024201 192 IPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.+|++| + +|+++..
T Consensus 80 ------~vP~l~-i--~G~~igg 93 (130)
T 2cq9_A 80 ------TVPRIF-V--NGTFIGG 93 (130)
T ss_dssp ------CSSEEE-E--TTEEEEE
T ss_pred ------CcCEEE-E--CCEEEcC
Confidence 789875 4 6876654
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.021 Score=41.02 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=49.2
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
|.+|. .+|||+|......| +++|+.+.-|.++...+..+.+.+. ..|..
T Consensus 6 I~vYs-~~~Cp~C~~aK~~L-------~~~gi~y~~idi~~d~~~~~~~~~~-----------------------~~G~~ 54 (92)
T 2lqo_A 6 LTIYT-TSWCGYCLRLKTAL-------TANRIAYDEVDIEHNRAAAEFVGSV-----------------------NGGNR 54 (92)
T ss_dssp EEEEE-CTTCSSHHHHHHHH-------HHTTCCCEEEETTTCHHHHHHHHHH-----------------------SSSSS
T ss_pred EEEEc-CCCCHhHHHHHHHH-------HhcCCceEEEEcCCCHHHHHHHHHH-----------------------cCCCC
Confidence 44555 79999998765444 3458888778777543333332221 11344
Q ss_pred cCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHhh
Q 024201 192 IPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQ 239 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~~ 239 (271)
..|.+|| .||.++.. .+.+++.+.|+++.-++
T Consensus 55 ------tVP~I~i--~Dg~~l~~--------~~~~el~~~L~el~gL~ 86 (92)
T 2lqo_A 55 ------TVPTVKF--ADGSTLTN--------PSADEVKAKLVKIAGLE 86 (92)
T ss_dssp ------CSCEEEE--TTSCEEES--------CCHHHHHHHHHHHHCCS
T ss_pred ------EeCEEEE--eCCEEEeC--------CCHHHHHHHHHHhcCCc
Confidence 5676655 46876542 35778888888775444
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.004 Score=48.85 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=60.3
Q ss_pred EecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE--eC---CCH------------HHHHHHHHH
Q 024201 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV--ST---DSV------------FSHLAWVQT 162 (271)
Q Consensus 100 v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V--S~---d~~------------~~~~~~~~~ 162 (271)
+.+..-.|+ .+|+.|. -.+||+|+...+.|.++ . ++.|+.+ .. .+. +..+.|.+-
T Consensus 7 i~~~~~~a~-~~vv~f~-D~~Cp~C~~~~~~l~~l----~--~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~ 78 (147)
T 3gv1_A 7 IKEVRGNGK-LKVAVFS-DPDCPFCKRLEHEFEKM----T--DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDW 78 (147)
T ss_dssp EEEEETTCC-EEEEEEE-CTTCHHHHHHHHHHTTC----C--SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeeecCCCC-EEEEEEE-CCCChhHHHHHHHHhhc----C--ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHH
Confidence 344333456 6777887 78899999988887653 2 4555543 33 111 111233322
Q ss_pred hhhcCCCCC--cccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 163 DRKSGGLGD--LKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 163 ~~~~~~~~~--~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+. .+.... ....-..+.+.++++.|||. .+|+++| .||+++. +. ...+++.+.|+..
T Consensus 79 ~~-~g~~~~~~~~~~~~v~~~~~la~~~gI~------gtPt~vi--~nG~~i~---G~----~~~~~l~~~i~~~ 137 (147)
T 3gv1_A 79 MR-KGKFPVGGSICDNPVAETTSLGEQFGFN------GTPTLVF--PNGRTQS---GY----SPMPQLEEIIRKN 137 (147)
T ss_dssp HH-HCCCCTTCCCCSCSHHHHHHHHHHTTCC------SSCEEEC--TTSCEEE---SC----CCTTHHHHHHHHT
T ss_pred Hh-CCCCCCccHHHHHHHHHHHHHHHHhCCC------ccCEEEE--ECCEEee---CC----CCHHHHHHHHHHH
Confidence 21 111100 01111122357889999999 8999887 5787422 21 2345666666543
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.019 Score=49.05 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=61.1
Q ss_pred CcEEEEEEec-CCCCCChHHHHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 108 KKYVILFFYP-LDFTFVCPTEITAFSDRYTEFEK--LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 108 kk~vvL~F~~-~t~Cp~C~~~l~~L~~~~~~~~~--~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
.+++||.||. +.||+ ..|.+.++.+++.. .+|.|.-|.++.. +- ..+.++
T Consensus 33 ~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~-----------------g~------~~n~~l 85 (248)
T 2c0g_A 33 FPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDY-----------------GE------LENKAL 85 (248)
T ss_dssp SSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSS-----------------TT------CTTHHH
T ss_pred CCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcc-----------------cc------cccHHH
Confidence 3488888984 68997 88889899888865 3577777776530 00 014678
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcE--EEEEeccCCCCCCHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVI--QHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V--~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++.|+|... .+|+++++- |++ ...+ ...-.+..+++.+.|+..
T Consensus 86 a~~~~V~~~----~~PTl~~F~--G~~~~~~~y--~~~G~~~~~~L~~fi~~~ 130 (248)
T 2c0g_A 86 GDRYKVDDK----NFPSIFLFK--GNADEYVQL--PSHVDVTLDNLKAFVSAN 130 (248)
T ss_dssp HHHTTCCTT----SCCEEEEES--SSSSSEEEC--CTTSCCCHHHHHHHHHHH
T ss_pred HHHhCCCcC----CCCeEEEEe--CCcCcceee--cccCCCCHHHHHHHHHHh
Confidence 899998721 379999884 873 2221 001246778888887654
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0057 Score=41.99 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=24.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|+.|+ .+|||+|+...+.|.+ .|+.+..|.++.
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 35 (81)
T 1h75_A 3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDR 35 (81)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCC
Confidence 56677 8999999987766653 467777777764
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0064 Score=47.59 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=38.7
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
|++|+ .+|||+|+...+.|.++ |+.+..|.+|...+..++ ..++.+.+|+.
T Consensus 51 Vvvf~-~~~Cp~C~~~k~~L~~~-------~i~~~~vdId~~~~~~~~---------------------~~~L~~~~g~~ 101 (146)
T 2ht9_A 51 VVIFS-KTSCSYCTMAKKLFHDM-------NVNYKVVELDLLEYGNQF---------------------QDALYKMTGER 101 (146)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHH-------TCCCEEEEGGGCTTHHHH---------------------HHHHHHHHSCC
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCCeEEEECccCcCCHHH---------------------HHHHHHHhCCC
Confidence 34477 89999999877766643 455444544421000111 13577788887
Q ss_pred cCCCCccceEEEEEcCCCcEEE
Q 024201 192 IPDQGIALRGLFIIDKEGVIQH 213 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~G~V~~ 213 (271)
.+|++| + +|+++.
T Consensus 102 ------tvP~if-i--~G~~ig 114 (146)
T 2ht9_A 102 ------TVPRIF-V--NGTFIG 114 (146)
T ss_dssp ------CSCEEE-E--TTEEEE
T ss_pred ------CcCeEE-E--CCEEEe
Confidence 789875 4 687654
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0061 Score=45.26 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=39.6
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcE---EEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTE---ILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~---vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.|++|+ .+|||+|+...+.|. +.|+. +..|.+|...+... ...++.+.
T Consensus 20 ~vv~f~-~~~Cp~C~~~~~~L~-------~~~~~~~~~~~vdi~~~~~~~~---------------------~~~~l~~~ 70 (114)
T 2hze_A 20 KVTIFV-KYTCPFCRNALDILN-------KFSFKRGAYEIVDIKEFKPENE---------------------LRDYFEQI 70 (114)
T ss_dssp CEEEEE-CTTCHHHHHHHHHHT-------TSCBCTTSEEEEEGGGSSSHHH---------------------HHHHHHHH
T ss_pred CEEEEE-eCCChhHHHHHHHHH-------HcCCCcCceEEEEccCCCChHH---------------------HHHHHHHH
Confidence 466677 899999987766554 34555 65565543110000 01357778
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEE
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQH 213 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~ 213 (271)
+|+. .+|.+| + +|+.+.
T Consensus 71 ~g~~------~vP~v~-i--~g~~ig 87 (114)
T 2hze_A 71 TGGK------TVPRIF-F--GKTSIG 87 (114)
T ss_dssp HSCC------SSCEEE-E--TTEEEE
T ss_pred hCCC------CcCEEE-E--CCEEEe
Confidence 8887 789765 4 587654
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0084 Score=43.38 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=17.6
Q ss_pred EEEEEecCCCCCChHHHHHHHHHH
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDR 134 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~ 134 (271)
.|++|+ .+|||+|+...+.|.++
T Consensus 13 ~v~~f~-~~~C~~C~~~~~~L~~~ 35 (105)
T 1kte_A 13 KVVVFI-KPTCPFCRKTQELLSQL 35 (105)
T ss_dssp CEEEEE-CSSCHHHHHHHHHHHHS
T ss_pred CEEEEE-cCCCHhHHHHHHHHHHc
Confidence 356677 89999999887777653
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.01 Score=44.51 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=38.3
Q ss_pred EEEEecCCCCCChHHH-HHHHHHHHHHHHhcC---cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 112 ILFFYPLDFTFVCPTE-ITAFSDRYTEFEKLN---TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~-l~~L~~~~~~~~~~g---v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
|++|+ .+|||+|+.. .+.| ++.+ +.+..|.+|...+..+. ..++.+.
T Consensus 27 Vvvf~-~~~Cp~C~~alk~~L-------~~~~~~~i~~~~vdid~~~~~~~~---------------------~~~l~~~ 77 (118)
T 3c1r_A 27 IFVAS-KTYCPYCHAALNTLF-------EKLKVPRSKVLVLQLNDMKEGADI---------------------QAALYEI 77 (118)
T ss_dssp EEEEE-CSSCHHHHHHHHHHH-------TTSCCCGGGEEEEEGGGSTTHHHH---------------------HHHHHHH
T ss_pred EEEEE-cCCCcCHHHHHHHHH-------HHcCCCCCCeEEEECccCCChHHH---------------------HHHHHHH
Confidence 55577 7999999976 3333 3344 66666666532110000 1356777
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEE
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQH 213 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~ 213 (271)
+|+. .+|.+| | +|+.+.
T Consensus 78 ~g~~------tvP~vf-i--~g~~ig 94 (118)
T 3c1r_A 78 NGQR------TVPNIY-I--NGKHIG 94 (118)
T ss_dssp HSCC------SSCEEE-E--TTEEEE
T ss_pred hCCC------CcCEEE-E--CCEEEE
Confidence 8887 788764 4 677654
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.013 Score=39.37 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=23.9
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|+.|+ ..|||.|+...+.|.+ .|+.+..|.++.
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~-------~~i~~~~~di~~ 35 (75)
T 1r7h_A 3 ITLYT-KPACVQCTATKKALDR-------AGLAYNTVDISL 35 (75)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred EEEEe-CCCChHHHHHHHHHHH-------cCCCcEEEECCC
Confidence 45666 8999999987776654 367777777664
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.04 Score=38.50 Aligned_cols=32 Identities=6% Similarity=0.137 Sum_probs=22.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
|+.|+ ..|||.|+...+.|.+ .|+.+..|.++
T Consensus 8 v~~y~-~~~C~~C~~~~~~L~~-------~~i~~~~vdv~ 39 (89)
T 2klx_A 8 IILYT-RPNCPYCKRARDLLDK-------KGVKYTDIDAS 39 (89)
T ss_dssp EEEES-CSCCTTTHHHHHHHHH-------HTCCEEEECSC
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 45566 8999999987666554 35677667666
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.058 Score=37.80 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=20.5
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
|.+|+ ..|||.|+.....|.++ |+.+-.+.++
T Consensus 14 v~ly~-~~~Cp~C~~~~~~L~~~-------gi~~~~~~v~ 45 (92)
T 3ic4_A 14 VLMYG-LSTCPHCKRTLEFLKRE-------GVDFEVIWID 45 (92)
T ss_dssp SEEEE-CTTCHHHHHHHHHHHHH-------TCCCEEEEGG
T ss_pred EEEEE-CCCChHHHHHHHHHHHc-------CCCcEEEEee
Confidence 45566 79999999876666543 4544445444
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.087 Score=42.52 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=76.7
Q ss_pred CCCCCCeEEeeecCCCceeEecc----cccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCH
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLS----DYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Ls----d~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
|...|.|--- .=.+.+..+ .-.+| +++|++. ..||+.|......+ .++.+-++ .++.+.+.+++..
T Consensus 29 g~~~p~F~~g----s~~~Al~~A~~~~k~e~K-~LlVyLh-s~~~~~~~~f~~~~L~~~~V~~~l~-~nfV~w~~dv~~~ 101 (178)
T 2ec4_A 29 GDCHPVFFIG----SLEAAFQEAFYVKARDRK-LLAIYLH-HDESVLTNVFCSQMLCAESIVSYLS-QNFITWAWDLTKD 101 (178)
T ss_dssp CSCCCCCCCS----CHHHHHHTTTSSCTTTCC-EEEEEEE-CSSCSHHHHHHHHTTTCHHHHHHHH-HTEEEEEEECCSH
T ss_pred CCCCCCeeeC----CHHHHHHHHHhhhhhhCc-EEEEEEe-CCCCccHHHHHHHhcCCHHHHHHHH-cCEEEEEEeCCCc
Confidence 6677888532 211233333 33455 8999999 89999987655332 11223333 3788888888887
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcCChHHH---HHhCCccCCCCccceEEEEEcCCC---cEEEEEeccCCCCCCHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSIS---KSYGVLIPDQGIALRGLFIIDKEG---VIQHSTINNLAIGRSVDE 227 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~---~~ygv~~~~~g~~~P~~~lID~~G---~V~~~~~~~~~~~~~~~e 227 (271)
+....+.....+. + ...++ +.|++. ..|..+||+++| +|+.+..|. .+.++
T Consensus 102 e~~~~~~~~~~~~-----~--------g~~~a~~~~~~~~~------~~P~l~ii~~~~~~~~vl~~~~G~----~~~~~ 158 (178)
T 2ec4_A 102 SNRARFLTMCNRH-----F--------GSVVAQTIRTQKTD------QFPLFLIIMGKRSSNEVLNVIQGN----TTVDE 158 (178)
T ss_dssp HHHHHHHHHHHHH-----T--------CHHHHHHHHHSCST------TCSEEEEECCCSSCCCEEEEECSC----CCHHH
T ss_pred hhhhhhhhhhhhh-----h--------HHHHHHHHhhcCCC------CCCeEEEEEcCCCceEEEEEEeCC----CCHHH
Confidence 7555554443111 0 12343 448888 899999998774 677775443 35788
Q ss_pred HHHHHHHH
Q 024201 228 TLRTLQAL 235 (271)
Q Consensus 228 ~l~~l~~l 235 (271)
++..|+..
T Consensus 159 ll~~L~~~ 166 (178)
T 2ec4_A 159 LMMRLMAA 166 (178)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.044 Score=39.80 Aligned_cols=27 Identities=4% Similarity=-0.141 Sum_probs=18.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 119 DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 119 t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.|||+|....+.|.++ |+.+.-|.++.
T Consensus 30 ~~C~~C~~~~~~L~~~-------~i~~~~vdi~~ 56 (105)
T 2yan_A 30 AKCGFSKQILEILNST-------GVEYETFDILE 56 (105)
T ss_dssp BCTTHHHHHHHHHHHH-------TCCCEEEEGGG
T ss_pred CCCccHHHHHHHHHHC-------CCCeEEEECCC
Confidence 8999999877666543 56666666653
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.051 Score=36.99 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=21.8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
|+.|+ ..|||.|+...+.|.+ .|+.+.-|.++
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~-------~~i~~~~~~i~ 34 (82)
T 1fov_A 3 VEIYT-KETCPYCHRAKALLSS-------KGVSFQELPID 34 (82)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHH-------HTCCCEEEECT
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------CCCCcEEEECC
Confidence 44566 7999999987766654 25666666665
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0035 Score=51.60 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=34.4
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCC
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d 151 (271)
++ ++||.|| +.|||+|....|.| .++.+++.+ +|.+.-+.++
T Consensus 113 ~~-~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~ 157 (197)
T 1un2_A 113 GA-PQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN 157 (197)
T ss_dssp TC-CSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred CC-CEEEEEE-CCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccC
Confidence 55 7999999 89999999999988 888877764 6777777665
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.037 Score=40.68 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=21.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
|++|+ .+|||+|....+-|.+ .|+.+-.|.+|
T Consensus 21 v~vy~-~~~Cp~C~~~~~~L~~-------~~i~~~~~di~ 52 (113)
T 3rhb_A 21 VVIYS-KTWCSYCTEVKTLFKR-------LGVQPLVVELD 52 (113)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEEGG
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCCCeEEEee
Confidence 55577 7999999977666654 35555555554
|
| >3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.07 Score=43.32 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeC
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVST 150 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~ 150 (271)
++ ++|+.|+ .-+||+|....+.| .++.+++.+ ++.++-+.+
T Consensus 21 ~~-~~vvef~-d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~~ 64 (191)
T 3l9s_A 21 GE-PQVLEFF-SFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYHV 64 (191)
T ss_dssp SS-SCEEEEE-CTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEEC
T ss_pred CC-CeEEEEE-CCCChhHHHhChhccchHHHHHhCCC-CcEEEEEec
Confidence 34 7888888 68899999998886 577777764 466666543
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.054 Score=39.15 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=22.4
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
.|+.|+ .+|||+|+...+.|.++ |+.+-.|.+|
T Consensus 23 ~v~ly~-~~~Cp~C~~ak~~L~~~-------~i~y~~vdI~ 55 (103)
T 3nzn_A 23 KVIMYG-LSTCVWCKKTKKLLTDL-------GVDFDYVYVD 55 (103)
T ss_dssp CEEEEE-CSSCHHHHHHHHHHHHH-------TBCEEEEEGG
T ss_pred eEEEEc-CCCCchHHHHHHHHHHc-------CCCcEEEEee
Confidence 355677 89999999887777543 4555445554
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.082 Score=39.06 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=22.0
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|+.|. .+|||+|.....-|.+ .|+.+-.|.+|.
T Consensus 19 v~vy~-~~~Cp~C~~ak~~L~~-------~~i~~~~~dvd~ 51 (114)
T 3h8q_A 19 VVIFS-KSYCPHSTRVKELFSS-------LGVECNVLELDQ 51 (114)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred EEEEE-cCCCCcHHHHHHHHHH-------cCCCcEEEEecC
Confidence 34466 7999999877666554 366666666664
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.075 Score=40.40 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=20.2
Q ss_pred EEEEecCCCCCChHHH-HHHHHHHHHHHHhcC---cEEEEEeCC
Q 024201 112 ILFFYPLDFTFVCPTE-ITAFSDRYTEFEKLN---TEILGVSTD 151 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~-l~~L~~~~~~~~~~g---v~vv~VS~d 151 (271)
|++|+ .+|||+|... .+.|. +.| +.+..|.+|
T Consensus 39 Vvvy~-~~~Cp~C~~a~k~~L~-------~~~~~~i~~~~vdvd 74 (129)
T 3ctg_A 39 VFVAA-KTYCPYCKATLSTLFQ-------ELNVPKSKALVLELD 74 (129)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHT-------TSCCCGGGEEEEEGG
T ss_pred EEEEE-CCCCCchHHHHHHHHH-------hcCccCCCcEEEEcc
Confidence 55666 7999999976 33333 334 665555554
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.19 Score=34.47 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=20.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|++|+ ..|||.|+.....|.+ .|+.+-.+.+|.
T Consensus 6 v~ly~-~~~Cp~C~~~~~~L~~-------~~i~~~~~~vd~ 38 (89)
T 3msz_A 6 VKIYT-RNGCPYCVWAKQWFEE-------NNIAFDETIIDD 38 (89)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEECCS
T ss_pred EEEEE-cCCChhHHHHHHHHHH-------cCCCceEEEeec
Confidence 55566 7999999876655533 355544445554
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.081 Score=38.19 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=24.6
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
.|++|+ ..|||+|.....-|.++ |+.+.-|.++..
T Consensus 17 ~v~vy~-~~~Cp~C~~ak~~L~~~-------~i~y~~idI~~~ 51 (99)
T 3qmx_A 17 KIEIYT-WSTCPFCMRALALLKRK-------GVEFQEYCIDGD 51 (99)
T ss_dssp CEEEEE-CTTCHHHHHHHHHHHHH-------TCCCEEEECTTC
T ss_pred CEEEEE-cCCChhHHHHHHHHHHC-------CCCCEEEEcCCC
Confidence 355666 79999999887776543 566666666653
|
| >2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.91 Score=39.01 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=25.9
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
+.|..|...+||+|.....-|.++..+ .++..+.+.++
T Consensus 44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~---~~vi~l~~~v~ 81 (270)
T 2axo_A 44 GVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD 81 (270)
T ss_dssp CEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred cEEEEEeCCCCCChHHHHHHHHHhhcc---CCeeeEEEEEE
Confidence 344444489999999888888877654 35655566554
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.24 Score=41.33 Aligned_cols=39 Identities=8% Similarity=0.326 Sum_probs=34.4
Q ss_pred CcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 171 DLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 171 ~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
++.+....+.+.++++.||+. ..|+.+|+++||++....
T Consensus 184 ~i~v~~~~~~~~~l~~~f~v~------~~Pslvl~~~~g~~~~~~ 222 (244)
T 3q6o_A 184 GVAVRRVLNTEANVVRKFGVT------DFPSCYLLFRNGSVSRVP 222 (244)
T ss_dssp TEEEEEEETTCHHHHHHHTCC------CSSEEEEEETTSCEEECC
T ss_pred ceEEEEEeCchHHHHHHcCCC------CCCeEEEEeCCCCeEeec
Confidence 456777778889999999999 889999999999999885
|
| >3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.24 Score=41.37 Aligned_cols=42 Identities=2% Similarity=-0.079 Sum_probs=28.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHH-HHHHHHHHh-cCcEEEEEe
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAF-SDRYTEFEK-LNTEILGVS 149 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L-~~~~~~~~~-~gv~vv~VS 149 (271)
.++ ++|+.|+ --.||+|....+.+ .++.++|.+ ..|.++...
T Consensus 38 ~A~-vtIvef~-Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~ 81 (226)
T 3f4s_A 38 KAP-ILMIEYA-SLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRH 81 (226)
T ss_dssp TCS-EEEEEEE-CTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEE
T ss_pred CCC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence 455 6777777 45599999888764 667777743 347766643
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.036 Score=44.75 Aligned_cols=39 Identities=13% Similarity=-0.044 Sum_probs=31.0
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST 150 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~ 150 (271)
++ ++|+.|| .-|||+|....|.+.++.+++ ++.+.-+.+
T Consensus 22 ~~-~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~ 60 (185)
T 3feu_A 22 GM-APVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMHI 60 (185)
T ss_dssp CC-CSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEEC
T ss_pred CC-CEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEec
Confidence 44 7889999 789999999999999998888 455555544
|
| >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.032 Score=45.15 Aligned_cols=40 Identities=5% Similarity=0.079 Sum_probs=30.3
Q ss_pred EEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCC
Q 024201 110 YVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d 151 (271)
++|+.|| ..|||+|....+.+ .++.+++.+ ++.++-+.+.
T Consensus 16 ~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 58 (189)
T 3l9v_A 16 PAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS 58 (189)
T ss_dssp CSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred CEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence 7889999 89999999998886 456555554 5777776553
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.73 E-value=0.18 Score=35.12 Aligned_cols=33 Identities=6% Similarity=0.141 Sum_probs=22.8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|+.|+ ..|||.|+...+.|.+ .|+.+..+.++.
T Consensus 8 v~ly~-~~~C~~C~~~~~~L~~-------~~i~~~~~di~~ 40 (92)
T 2khp_A 8 VIIYT-RPGCPYCARAKALLAR-------KGAEFNEIDASA 40 (92)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEESTT
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCC
Confidence 55666 7999999976665543 367766676663
|
| >1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=90.85 E-value=0.47 Score=34.47 Aligned_cols=35 Identities=11% Similarity=-0.023 Sum_probs=23.9
Q ss_pred EEEEEEecC----CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 110 YVILFFYPL----DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 110 ~vvL~F~~~----t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.++|++. + .|||+|......|.+ .|+.+.-|.++.
T Consensus 16 ~vvvy~~-g~~~~~~Cp~C~~ak~~L~~-------~~i~~~~vdi~~ 54 (109)
T 1wik_A 16 SVMLFMK-GNKQEAKCGFSKQILEILNS-------TGVEYETFDILE 54 (109)
T ss_dssp SEEEEES-STTTCCCSSTHHHHHHHHHH-------TCSCEEEEESSS
T ss_pred CEEEEEe-cCCCCCCCchHHHHHHHHHH-------cCCCeEEEECCC
Confidence 3555444 4 899999977666543 478877777765
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=90.70 E-value=2 Score=35.19 Aligned_cols=91 Identities=9% Similarity=0.007 Sum_probs=57.0
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.++|.|. ..||+.|...++.+.++.++++++ +.++.|..+... .+.+.+.||
T Consensus 133 ~~~l~f~-~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~~~~--------------------------~~~~l~~fg 184 (227)
T 4f9z_D 133 IHLLLIM-NKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGMKE--------------------------NGKVISFFK 184 (227)
T ss_dssp EEEEEEE-CTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETTSGG--------------------------GHHHHHHTT
T ss_pred eEEEEEE-cCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCccHh--------------------------HHHHHHHcC
Confidence 4445555 568999999999999999998864 666666655311 123445567
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+... ..|...|++..+..++.. .. ..-..+.+.+.++.+
T Consensus 185 l~~~----~~P~~~i~~~~~~~ky~~-~~--~~~t~~~i~~Fv~~~ 223 (227)
T 4f9z_D 185 LKES----QLPALAIYQTLDDEWDTL-PT--AEVSVEHVQNFCDGF 223 (227)
T ss_dssp CCGG----GCSEEEEEESSSCCEEEE-TT--CCCCHHHHHHHHHHH
T ss_pred CCcc----cCCEEEEEECCCCccccC-Cc--CCCCHHHHHHHHHHH
Confidence 6521 468888988665544443 11 123567777776654
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=90.10 E-value=3.1 Score=38.65 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=61.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
..+|..+|+.-+. .+|+.+++-|+-|...+||.+- . . ........+..++ .|+.+-.+.+..
T Consensus 420 ~~pG~r~p~~~l~----~~~~~~~~~dl~g~~f~ll~~~-~---~--~~~~~~~~~~~~~---~~~~~~~~~~~~----- 481 (535)
T 3ihg_A 420 GRPGFRGPHVLVS----RHGERLSTVDLFGDGWTLLAGE-L---G--ADWVAAAEAVSAE---LGVPVRAYRVGA----- 481 (535)
T ss_dssp CCTTSBCCCCEEE----ETTEEEEGGGGCSSSEEEEECT-T---C--HHHHHHHHHHHHH---HTCCEEEEEBTT-----
T ss_pred CCCCCcCCCceee----cCCceeeHHHhcCCceEEEecC-C---c--cHHHHHHHHHHHh---cCCceEEEEeCC-----
Confidence 5689999999984 3567889999989877776532 1 1 1111122222333 354444443322
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
. +.|..+.+++.||+. -...+||-+||.|-++.-
T Consensus 482 -------------~-----~~d~~~~~~~~~~~~-------~~~~~lvRPD~~va~r~~ 515 (535)
T 3ihg_A 482 -------------G-----LTDPESAVSERYGIG-------KAGASLVRPDGIVAWRTD 515 (535)
T ss_dssp -------------T-----BBCSSCCHHHHHTCT-------TTCEEEECTTSBEEEEES
T ss_pred -------------c-----cccCcchHHHHhCCC-------CCceEeeCCCceeEEecC
Confidence 1 246678899999987 234799999999999963
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=4.2 Score=39.21 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=76.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEeccccc---CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHH---------------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYI---GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE--------------- 139 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~---gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~--------------- 139 (271)
+.+|..+|++.+.. ..+|+.+.|.++. |+ ++||.|- +.-. .......+.++.+.+.
T Consensus 479 ~~~G~r~p~~~~~~--~~~g~~~~l~~~l~~~g~-~~ll~~~-~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 552 (665)
T 1pn0_A 479 CVVGTRFKSQPVVR--HSEGLWMHFGDRLVTDGR-FRIIVFA-GKAT--DATQMSRIKKFAAYLDSENSVISRYTPKGAD 552 (665)
T ss_dssp SCTTSBCCCCEEEE--TTTTEEEEGGGGCCCSSC-EEEEEEE-ECTT--SHHHHHHHHHHHHHHHSTTSHHHHHSBTTSC
T ss_pred CCCcCCCCCCeEEe--cCCCcEEEHhHhhccCCC-EEEEEec-CCcc--cchhHHHHHHHHHHhhccccHHhhcCCcccC
Confidence 56899999999862 3467789998854 44 8888876 3311 1122233444444432
Q ss_pred -hcCcEEEEEeCCCHHHHHHHHHHhhh-cCCCC-CcccceEEcC------ChHHHHHhCCccCCCCccceEEEEEcCCCc
Q 024201 140 -KLNTEILGVSTDSVFSHLAWVQTDRK-SGGLG-DLKYPLIADI------TKSISKSYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 140 -~~gv~vv~VS~d~~~~~~~~~~~~~~-~~~~~-~~~f~~l~D~------~~~~~~~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
+.-++++.|........ ++. .... ..... .+ +.++.|. .+.+.+.||+... .-..+||-+||-
T Consensus 553 ~~~~~~~~~i~~~~~~~~-~~~-~~p~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~g~~~~-----~g~~vlvRPD~y 624 (665)
T 1pn0_A 553 RNSRIDVITIHSCHRDDI-EMH-DFPAPALHPKWQY-DFIYADCDSWHHPHPKSYQAWGVDET-----KGAVVVVRPDGY 624 (665)
T ss_dssp TTSSEEEEEEESSCTTSC-CGG-GSCTTTTSCTTCC-SSEEECSCCSSSCCCCHHHHHTBCTT-----TCEEEEECTTSB
T ss_pred ccceeEEEEEecCCCCcc-chh-hCCHHHcCcccch-heEeecCcccccccccHHHHcCCCCC-----CceEEEECCCCc
Confidence 11277777743321110 000 0000 00000 11 2455662 4679999998621 345799999999
Q ss_pred EEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 211 IQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 211 V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|-++.- ....+++.+.+..+
T Consensus 625 V~~~~~-----~~~~~~l~~~~~~~ 644 (665)
T 1pn0_A 625 TSLVTD-----LEGTAEIDRYFSGI 644 (665)
T ss_dssp EEEEEC-----TTTHHHHHHHHHTT
T ss_pred EEEEec-----cccHHHHHHHHHHH
Confidence 998842 23466677776654
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=4.9 Score=38.47 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=75.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEeccccc---CCcEEEEEEecCCCCCChH-HHHHHHHHHH--------HHHHhc----
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYI---GKKYVILFFYPLDFTFVCP-TEITAFSDRY--------TEFEKL---- 141 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~---gkk~vvL~F~~~t~Cp~C~-~~l~~L~~~~--------~~~~~~---- 141 (271)
+.+|..+|++.+.. ..+|+.+.|.++. |+ ++||.|- +.-.+.+. ..+..+.+.. ..|...
T Consensus 467 ~~~G~r~p~~~~~~--~~~g~~~~l~~~~~~~g~-~~ll~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 542 (639)
T 2dkh_A 467 FTVGMRFHSAPVVR--VCDAKPVQLGHCGKADGR-WRLYAFA-AQNDLAQPESGLLALCRFLEGDAASPLRRFTPAGQDI 542 (639)
T ss_dssp SCTTSBCCCCEEEE--TTTCCEEEGGGGCCSSSC-EEEEEEC-CTTTTTCTTSHHHHHHHHHHHCTTCHHHHHSCTTSCT
T ss_pred CCCcCCCCCCeEEe--cCCCCEEEHHHhhccCCC-EEEEEec-CCCCchhhHHHHHHHHHHHhhCCccHHHhcCCCCCCc
Confidence 56899999999862 3467788998854 44 8888875 44333343 3333443332 233211
Q ss_pred --CcEEEEEeCCCHHH--HHHH---HHHhhhcCCCCCcccceEEcCC----hHHHHHhCCccCCCCccceEEEEEcCCCc
Q 024201 142 --NTEILGVSTDSVFS--HLAW---VQTDRKSGGLGDLKYPLIADIT----KSISKSYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 142 --gv~vv~VS~d~~~~--~~~~---~~~~~~~~~~~~~~f~~l~D~~----~~~~~~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
=++++.|......+ ...+ ........+..++ +.++.|.. +.+.+.||+... .-..+||-+||-
T Consensus 543 ~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~g~~~~-----~g~~v~vRPD~y 616 (639)
T 2dkh_A 543 DSIFDLRAVFPQAYTEVALETLPALLLPPKGQLGMIDY-EKVFSPDLKNAGQDIFELRGIDRQ-----QGALVVVRPDQY 616 (639)
T ss_dssp TSSEEEEEECSSCGGGCCGGGSCGGGSCEETTTTEECC-CSEEECCCSSTTCCHHHHTTBCTT-----TCEEEEECTTSB
T ss_pred CceEEEEEEecCCCCccchhhCcHhhCCcccccccccc-eeEEeCCCcccccchHHHhCCCCC-----ceEEEEECCCCc
Confidence 26777774432111 1111 0100000010011 34566632 568999998521 345799999999
Q ss_pred EEEEEeccCCCCCCHHHHHHHHH
Q 024201 211 IQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 211 V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
|-.+.- ..+.+++.+.+.
T Consensus 617 v~~~~~-----~~~~~~l~~~~~ 634 (639)
T 2dkh_A 617 VAQVLP-----LGDHAALSAYFE 634 (639)
T ss_dssp EEEEEC-----TTCHHHHHHHHH
T ss_pred eEEeec-----hhhHHHHHHHHH
Confidence 988742 234555655554
|
| >3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12 | Back alignment and structure |
|---|
Probab=85.94 E-value=2.3 Score=31.54 Aligned_cols=63 Identities=6% Similarity=-0.045 Sum_probs=41.3
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC----CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD----SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d----~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
+|...+|+.|+....-|. ++|+.+..+... +.+++.+|.+.. +.++.-+....+...+.++.
T Consensus 4 iY~~~~C~~c~ka~~~L~-------~~gi~~~~~di~~~~~~~~el~~~l~~~-------~~~~~~l~n~~~~~~k~l~~ 69 (120)
T 3l78_A 4 LFLSPSCTSCRKARAWLN-------RHDVVFQEHNIMTSPLSRDELLKILSYT-------ENGTEDIISTRSKVFQKLDI 69 (120)
T ss_dssp EEECSSCHHHHHHHHHHH-------HTTCCEEEEETTTSCCCHHHHHHHHHHC-------SSTHHHHBCTTCHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHH-------HcCCCeEEEecccCCCcHHHHHHHHhhc-------CCCHHHhhcCCcHHHHHcCC
Confidence 343788999987765553 457777666553 356777887765 44555555566777777775
Q ss_pred c
Q 024201 191 L 191 (271)
Q Consensus 191 ~ 191 (271)
.
T Consensus 70 ~ 70 (120)
T 3l78_A 70 D 70 (120)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A | Back alignment and structure |
|---|
Probab=85.04 E-value=1.1 Score=35.36 Aligned_cols=42 Identities=5% Similarity=-0.038 Sum_probs=32.0
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHH-HHHHHHHHhcCcEEEEEeCC
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAF-SDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L-~~~~~~~~~~gv~vv~VS~d 151 (271)
++ +++|.|| .-.||.|....+.+ .++.+++.. .+.+..+..+
T Consensus 17 ~~-~~~ief~-d~~CP~C~~~~~~l~~~l~~~~~~-~v~~~~~~l~ 59 (195)
T 3c7m_A 17 AD-KTLIKVF-SYACPFCYKYDKAVTGPVSEKVKD-IVAFTPFHLE 59 (195)
T ss_dssp CT-TEEEEEE-CTTCHHHHHHHHHTHHHHHHHTTT-TCEEEEEECT
T ss_pred CC-cEEEEEE-eCcCcchhhCcHHHHHHHHHhCCC-ceEEEEEecC
Confidence 44 6788888 58899999998888 888777753 4777776654
|
| >1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A | Back alignment and structure |
|---|
Probab=84.56 E-value=1.7 Score=32.82 Aligned_cols=65 Identities=6% Similarity=-0.013 Sum_probs=40.9
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC----HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS----VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~----~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
|.+|. ..+||.|+.....|.+ .|+.+..+.++. .+++.+|.+.. +.++.-+....+..++.
T Consensus 3 i~lY~-~~~C~~C~ka~~~L~~-------~gi~y~~~di~~~~~~~~el~~~l~~~-------~~~~~~l~n~~~~~~k~ 67 (132)
T 1z3e_A 3 VTLYT-SPSCTSCRKARAWLEE-------HEIPFVERNIFSEPLSIDEIKQILRMT-------EDGTDEIISTRSKVFQK 67 (132)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCEEEEETTTSCCCHHHHHHHHHTC-------SSCGGGTBCTTSHHHHH
T ss_pred EEEEe-CCCChHHHHHHHHHHH-------cCCceEEEEccCCCccHHHHHHHHHHc-------CCCHHHhhcCCchHHHh
Confidence 33444 7899999877665543 477776666542 35566776644 34555555566777777
Q ss_pred hCCc
Q 024201 188 YGVL 191 (271)
Q Consensus 188 ygv~ 191 (271)
++..
T Consensus 68 l~~~ 71 (132)
T 1z3e_A 68 LNVN 71 (132)
T ss_dssp HCCC
T ss_pred cCcc
Confidence 7754
|
| >3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=84.39 E-value=3.9 Score=29.84 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=59.1
Q ss_pred EEEEecCCCCC--Ch----HHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 112 ILFFYPLDFTF--VC----PTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 112 vL~F~~~t~Cp--~C----~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
|-+|=|+-||+ .| ..++-++....+.++++|++|-=.+... +-.+|.+.. .-.++.
T Consensus 7 i~ifepamCCstGvCG~~vd~eL~~~~~~~~~lk~~Gi~V~RyNL~~--~P~~F~~N~----------------~V~~~L 68 (106)
T 3ktb_A 7 IEIFDPAMCCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHNLRD--EPQVYVSNK----------------TVNDFL 68 (106)
T ss_dssp EEEEECSCSSTTSCSSSCCCHHHHHHHHHHHHHHHTTCCCEEEETTT--CTTHHHHSH----------------HHHHHH
T ss_pred EEEechhhccCCCCcCCCCCHHHHHHHHHHHHHHHCCCEEEEEcccc--ChHHHhcCH----------------HHHHHH
Confidence 56788899997 56 3778899999999999998877766654 223444432 014566
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
+.+|+. .+|.+ +| ||+|+..-.+ ...+|+.+.+
T Consensus 69 ~~~G~~------~LP~~-~V--DGevv~~G~y-----Pt~eEl~~~l 101 (106)
T 3ktb_A 69 QKHGAD------ALPIT-LV--DGEIAVSQTY-----PTTKQMSEWT 101 (106)
T ss_dssp HTTCGG------GCSEE-EE--TTEEEECSSC-----CCHHHHHHHH
T ss_pred HHcCcc------cCCEE-EE--CCEEEEeccC-----CCHHHHHHHh
Confidence 677877 67765 55 6999887322 2456665554
|
| >2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.28 E-value=3.3 Score=30.00 Aligned_cols=45 Identities=13% Similarity=-0.026 Sum_probs=24.9
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
|++|. .++||.|..- ..-+++...|+++|+.+.-|.++.....++
T Consensus 10 V~vy~-~~~C~~C~~~-~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~ 54 (111)
T 2ct6_A 10 IRVFI-ASSSGFVAIK-KKQQDVVRFLEANKIEFEEVDITMSEEQRQ 54 (111)
T ss_dssp EEEEE-CSSCSCHHHH-HHHHHHHHHHHHTTCCEEEEETTTCHHHHH
T ss_pred EEEEE-cCCCCCcccc-hhHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 44445 6899999831 011122223445688888888775433333
|
| >1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A | Back alignment and structure |
|---|
Probab=83.98 E-value=1.9 Score=29.61 Aligned_cols=31 Identities=6% Similarity=-0.060 Sum_probs=21.0
Q ss_pred EEEecCC----CCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 113 LFFYPLD----FTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 113 L~F~~~t----~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
++|. .+ |||.|.....-|. ++|+.+-.|.++
T Consensus 3 ~iY~-~~~~~~~Cp~C~~ak~~L~-------~~gi~y~~idI~ 37 (87)
T 1aba_A 3 KVYG-YDSNIHKCGPCDNAKRLLT-------VKKQPFEFINIM 37 (87)
T ss_dssp EEEE-CCTTTSCCHHHHHHHHHHH-------HTTCCEEEEESC
T ss_pred EEEE-eCCCCCcCccHHHHHHHHH-------HcCCCEEEEEee
Confidence 4455 68 9999986655443 347777777776
|
| >3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=83.75 E-value=1.1 Score=38.55 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=30.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
.|+ .+|+.|+ -..||+|+...+.+.+..+. -.|.++.+..-
T Consensus 146 ~gk-~~I~vFt-Dp~CPYCkkl~~~l~~~l~~---~~Vr~i~~Pil 186 (273)
T 3tdg_A 146 NKD-KILYIVS-DPMCPHCQKELTKLRDHLKE---NTVRMVVVGWL 186 (273)
T ss_dssp GTT-CEEEEEE-CTTCHHHHHHHHTHHHHHHH---CEEEEEECCCS
T ss_pred CCC-eEEEEEE-CcCChhHHHHHHHHHHHhhC---CcEEEEEeecc
Confidence 355 6888888 67799999999999876653 35777776654
|
| >1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A | Back alignment and structure |
|---|
Probab=83.72 E-value=3.3 Score=28.75 Aligned_cols=38 Identities=5% Similarity=-0.037 Sum_probs=21.2
Q ss_pred EEEEecCCCCCChH--HHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 112 ILFFYPLDFTFVCP--TEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 112 vL~F~~~t~Cp~C~--~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
|+.|. .++||.|. ..-....+ -++++|+.+.-|.++..
T Consensus 4 v~ly~-~~~C~~c~~~~~~~~ak~---~L~~~~i~~~~~di~~~ 43 (93)
T 1t1v_A 4 LRVYS-TSVTGSREIKSQQSEVTR---ILDGKRIQYQLVDISQD 43 (93)
T ss_dssp EEEEE-CSSCSCHHHHHHHHHHHH---HHHHTTCCCEEEETTSC
T ss_pred EEEEE-cCCCCCchhhHHHHHHHH---HHHHCCCceEEEECCCC
Confidence 33445 68999994 11112222 23455787777777653
|
| >3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A | Back alignment and structure |
|---|
Probab=83.14 E-value=5.3 Score=29.37 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=54.8
Q ss_pred EEEEecCCCCC--ChH----HHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 112 ILFFYPLDFTF--VCP----TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 112 vL~F~~~t~Cp--~C~----~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
|-+|=++-||+ .|- .++-++....+.++++|++|-=.+... +-.+|.+.- .-.++.
T Consensus 4 i~ifepamCCstGvCG~~vd~~L~~~~~~~~~lk~~Gi~V~RyNL~~--~P~aF~~N~----------------~V~~~L 65 (110)
T 3kgk_A 4 LMVFDPAMAASTGVCGTDVDQALVDFSTDVQWLKQSGVQIERFNLAQ--QPMSFVQNE----------------KVKAFI 65 (110)
T ss_dssp EEEEECC-------------CHHHHHHHHHHHHHHHTCCEEEEETTT--CTTHHHHSH----------------HHHHHH
T ss_pred eEEecchhccccCCcCCCCCHHHHHHHHHHHHHHHCCCeEEEEcccc--ChHHHhcCH----------------HHHHHH
Confidence 55677888886 574 557788888888999998888776654 223455432 114667
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.+|+. .+|.+ +| ||+|+..-.+ ...+|+.+.+.
T Consensus 66 ~~~G~~------~LP~~-~V--DGevv~~G~y-----Pt~eEl~~~lg 99 (110)
T 3kgk_A 66 EASGAE------GLPLL-LL--DGETVMAGRY-----PKRAELARWFG 99 (110)
T ss_dssp HHHCGG------GCCEE-EE--TTEEEEESSC-----CCHHHHHHHHT
T ss_pred HHcCcc------cCCEE-EE--CCEEEEeccC-----CCHHHHHHHhC
Confidence 778888 77765 55 6999987322 24566666553
|
| >2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A | Back alignment and structure |
|---|
Probab=82.16 E-value=0.89 Score=34.71 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=21.9
Q ss_pred EEEEEEecC----CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 110 YVILFFYPL----DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 110 ~vvL~F~~~----t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
.++|+.. + .|||+|......|. +.|+.+..|.++
T Consensus 36 ~Vvvy~k-s~~~~~~Cp~C~~ak~~L~-------~~gv~y~~vdI~ 73 (135)
T 2wci_A 36 PILLYMK-GSPKLPSCGFSAQAVQALA-------ACGERFAYVDIL 73 (135)
T ss_dssp SEEEEES-BCSSSBSSHHHHHHHHHHH-------TTCSCCEEEEGG
T ss_pred CEEEEEE-ecCCCCCCccHHHHHHHHH-------HcCCceEEEECC
Confidence 3555554 4 69999987665553 346776666665
|
| >3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.25 E-value=4.9 Score=29.70 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=21.1
Q ss_pred EEEEEEecCC----CCCChHHHHHHHHHHHHHHHhcCcE---EEEEeCCC
Q 024201 110 YVILFFYPLD----FTFVCPTEITAFSDRYTEFEKLNTE---ILGVSTDS 152 (271)
Q Consensus 110 ~vvL~F~~~t----~Cp~C~~~l~~L~~~~~~~~~~gv~---vv~VS~d~ 152 (271)
.|+|+-- .+ |||+|.....-|.+. |+. +.-+.++.
T Consensus 17 ~Vvvfsk-~t~~~p~Cp~C~~ak~lL~~~-------gv~~~~~~~~dv~~ 58 (121)
T 3gx8_A 17 PVVLFMK-GTPEFPKCGFSRATIGLLGNQ-------GVDPAKFAAYNVLE 58 (121)
T ss_dssp SEEEEES-BCSSSBCTTHHHHHHHHHHHH-------TBCGGGEEEEECTT
T ss_pred CEEEEEe-ccCCCCCCccHHHHHHHHHHc-------CCCcceEEEEEecC
Confidence 3554444 43 999998876666542 555 55555553
|
| >3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=80.61 E-value=3.4 Score=30.65 Aligned_cols=63 Identities=11% Similarity=0.229 Sum_probs=41.5
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--C--CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 114 FFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 114 ~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d--~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|...+|+.|+....-|. ++|+.+-.+.. + +.+++.+|.+.. +.++.-+....+...+.++
T Consensus 6 ~iY~~~~C~~c~ka~~~L~-------~~gi~~~~~di~~~~~~~~eL~~~l~~~-------g~~~~~l~n~~~~~~k~l~ 71 (120)
T 3fz4_A 6 TFYEYPKCSTCRRAKAELD-------DLAWDYDAIDIKKNPPAASLIRNWLENS-------GLELKKFFNTSGQSYRALG 71 (120)
T ss_dssp EEEECSSCHHHHHHHHHHH-------HHTCCEEEEETTTSCCCHHHHHHHHHHS-------CCCGGGGBCTTSHHHHHTT
T ss_pred EEEeCCCChHHHHHHHHHH-------HcCCceEEEEeccCchhHHHHHHHHHHc-------CCCHHHHhCCCCcchhhcC
Confidence 3444788999988766554 34776666654 3 456778888876 4455555556677777776
Q ss_pred C
Q 024201 190 V 190 (271)
Q Consensus 190 v 190 (271)
+
T Consensus 72 l 72 (120)
T 3fz4_A 72 L 72 (120)
T ss_dssp H
T ss_pred c
Confidence 5
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 271 | ||||
| d1qmva_ | 197 | c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox | 9e-71 | |
| d1uula_ | 194 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 5e-70 | |
| d1n8ja_ | 186 | c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC | 6e-60 | |
| d2h01a1 | 170 | c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio | 2e-58 | |
| d1xcca_ | 219 | c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe | 3e-56 | |
| d1prxa_ | 220 | c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa | 5e-56 | |
| d1zofa1 | 170 | c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He | 2e-53 | |
| d1zyea1 | 158 | c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) | 3e-52 | |
| d2zcta1 | 237 | c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni | 2e-51 | |
| d1we0a1 | 166 | c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase | 2e-50 | |
| d1e2ya_ | 167 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 8e-50 | |
| d2bmxa1 | 169 | c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase | 2e-31 | |
| d1xvwa1 | 153 | c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c | 8e-25 | |
| d1psqa_ | 163 | c.47.1.10 (A:) Probable thiol peroxidase PsaD {Str | 2e-22 | |
| d2cx4a1 | 160 | c.47.1.10 (A:4-163) Bacterioferritin comigratory p | 3e-22 | |
| d1q98a_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i | 8e-22 | |
| d1hd2a_ | 161 | c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien | 3e-21 | |
| d1xvqa_ | 166 | c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium | 8e-19 | |
| d1qxha_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia c | 8e-19 | |
| d1nm3a2 | 163 | c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybr | 2e-18 | |
| d2a4va1 | 156 | c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's y | 6e-16 | |
| d1tp9a1 | 162 | c.47.1.10 (A:1-162) Plant peroxiredoxin {Western b | 1e-13 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 2e-06 | |
| d2b7ka1 | 169 | c.47.1.10 (A:111-279) Thioredoxin-like protein Sco | 4e-06 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 9e-06 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 9e-06 | |
| d1xzoa1 | 172 | c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 | 5e-05 | |
| d1xiya1 | 179 | c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria p | 7e-05 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 3e-04 |
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Score = 214 bits (545), Expect = 9e-71
Identities = 119/190 (62%), Positives = 144/190 (75%), Gaps = 2/190 (1%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+G APDF A AV D F VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R +F
Sbjct: 7 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFR 65
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIAL 199
KL E+LGVS DS F+HLAW+ T RK GGLG L PL+AD+T+ +S+ YGVL D+GIA
Sbjct: 66 KLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAY 125
Query: 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 259
RGLFIID +GV++ T+N+L +GRSVDE LR +QA QY E+ EVCPAGWKPG ++KP
Sbjct: 126 RGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKP 184
Query: 260 DPKLSKEYFA 269
+ SKEYF+
Sbjct: 185 NVDDSKEYFS 194
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Score = 212 bits (540), Expect = 5e-70
Identities = 104/192 (54%), Positives = 135/192 (70%), Gaps = 3/192 (1%)
Query: 80 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
+ APDF A+ + F V L+ Y GK +++LFFYP+DFTFVCPTEI FSDR EF
Sbjct: 5 DLHPAPDFNETALMPNGTFKKVALTSYKGK-WLVLFFYPMDFTFVCPTEICQFSDRVKEF 63
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
+ E+L S DS +SHLAW +RK GGLG + P++AD TK I KSYGVL + G+A
Sbjct: 64 SDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVA 123
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMK 258
RGLFIID + ++ T+N+L +GR VDE LR ++A Q+V+++ EVCPA WKPGDK+MK
Sbjct: 124 YRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKH-GEVCPANWKPGDKTMK 182
Query: 259 PDPKLSKEYFAA 270
PDP+ SKEYF A
Sbjct: 183 PDPEKSKEYFGA 194
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Score = 186 bits (472), Expect = 6e-60
Identities = 68/185 (36%), Positives = 106/185 (57%), Gaps = 4/185 (2%)
Query: 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
L+ F +A + EFI V D G+ + + FFYP DFTFV PTE+ +D Y E
Sbjct: 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVSPTELGDVADHYEEL 60
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
+KL ++ VSTD+ F+H AW + + +KY +I D T ++++++ + D+G+A
Sbjct: 61 QKLGVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLA 117
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMK 258
R F++D +G+IQ + IGR + LR ++A QYV +P EVCPA WK G+ ++
Sbjct: 118 DRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLA 177
Query: 259 PDPKL 263
P L
Sbjct: 178 PSLDL 182
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Score = 182 bits (461), Expect = 2e-58
Identities = 94/171 (54%), Positives = 126/171 (73%), Gaps = 3/171 (1%)
Query: 84 APDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN 142
AP F AEAVF D F V LSD+IGKKYV+L+FYPLDFTFVCP+EI A F++ N
Sbjct: 2 APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN 61
Query: 143 TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGL 202
E+LG S DS F+HLAW +T GG+G++K+ LI+DI+KSI++SY V + ++ +ALR
Sbjct: 62 VELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDV-LFNESVALRAF 120
Query: 203 FIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 253
+IDK+GV+QH +NNLA+GRSVDE LR + ALQ+ ++ +VCPA W+ G
Sbjct: 121 VLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYG-DVCPANWQKG 170
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 178 bits (451), Expect = 3e-56
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 13/199 (6%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+G T P+F A+A + +L YI + ILF +P DFT VC TE+ + +F
Sbjct: 4 LGATFPNFTAKASGIDG--DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFL 61
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ---- 195
KLN +++G S +S SH W++ + G L + P++ D ++ ++ ++ +
Sbjct: 62 KLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDIT 121
Query: 196 --GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 253
+ R LF I E I+ + + GR+ E LR L++LQ P P W G
Sbjct: 122 GLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTP-VATPVNWNEG 180
Query: 254 DKSMKP----DPKLSKEYF 268
DK D ++SK +
Sbjct: 181 DKCCVIPTLQDDEISKHFK 199
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Score = 177 bits (450), Expect = 5e-56
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 17/202 (8%)
Query: 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
L+G+ AP+F A ++ D++G + ILF +P DFT VC TE+ + EF
Sbjct: 2 LLGDVAPNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEF 57
Query: 139 EKLNTEILGVSTDSVFSHLAWVQ---TDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ 195
K N +++ +S DSV HLAW + L +P+I D + ++ G+L P +
Sbjct: 58 AKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAE 117
Query: 196 G------IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAG 249
+ R +F+ + ++ S + GR+ DE LR + +LQ E P
Sbjct: 118 KDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEK-RVATPVD 176
Query: 250 WKPGDKSMKP---DPKLSKEYF 268
WK GD M + +K+ F
Sbjct: 177 WKDGDSVMVLPTIPEEEAKKLF 198
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Score = 169 bits (428), Expect = 2e-53
Identities = 82/171 (47%), Positives = 112/171 (65%), Gaps = 4/171 (2%)
Query: 79 LVGNTAPDFAAEAVF--DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
+V APDF A AV ++ + +LS +GK VILFF+P DFTFVCPTEI AF R
Sbjct: 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
+F + ++GVS DS H AW T + GG+G + +P++ADITKSIS+ Y VL +
Sbjct: 62 DFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEA- 120
Query: 197 IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCP 247
IALRG F+IDK ++H+ IN+L +GR+ DE LR + AL + +E+ EVCP
Sbjct: 121 IALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEH-GEVCP 170
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Score = 165 bits (419), Expect = 3e-52
Identities = 89/156 (57%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNT 143
AP F AV EF + L D+ GK ++LFFYPLDFTFVCPTEI AFSD+ +EF +N
Sbjct: 3 APYFKGTAVVSGEFKEISLDDFKGKY-LVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNC 61
Query: 144 EILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLF 203
E++ VS DS FSHLAW+ T RK+GGLG + L++D+TK IS+ YGVL+ G+ALRGLF
Sbjct: 62 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 121
Query: 204 IIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQ 239
IID GVI+H ++N+L +GRSV+ETLR ++A Q+V+
Sbjct: 122 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE 157
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Score = 166 bits (421), Expect = 2e-51
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 13/196 (6%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY--IGKKYVILFFYPLDFTFVCPTEITAFSDRY 135
PL+G P+ +KL D+ K+ +LF +P DFT VC TE +F+ RY
Sbjct: 1 PLIGERFPEMEVTTDHG----VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRY 56
Query: 136 TEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ 195
+F++L +++G+S DSVFSH+ W + + G+ + +P+IAD ++++ G+L +
Sbjct: 57 EDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVR-IPFPIIADPQGTVARRLGLLHAES 115
Query: 196 GI-ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKP-- 252
+RG+FI+D GVI+ + +GR VDE LR ++AL+ ++ PA W
Sbjct: 116 ATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLG-DSLKRAVPADWPNNE 174
Query: 253 --GDKSMKPDPKLSKE 266
G+ + P P +
Sbjct: 175 IIGEGLIVPPPTTEDQ 190
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Score = 161 bits (408), Expect = 2e-50
Identities = 71/169 (42%), Positives = 98/169 (57%), Gaps = 5/169 (2%)
Query: 79 LVGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
L+G F A+A ++F V +D GK I+ FYP DF+FVCPTE+ Y E
Sbjct: 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKW-SIVVFYPADFSFVCPTELEDVQKEYAE 60
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
+KL E+ VSTD+ F H AW S +G ++Y +I D +++IS+ + VL + G+
Sbjct: 61 LKKLGVEVYSVSTDTHFVHKAW---HENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGL 117
Query: 198 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVC 246
A RG FIID +GVIQ IN IGR + ++A QYV+ENP EVC
Sbjct: 118 ADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVC 166
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Score = 160 bits (404), Expect = 8e-50
Identities = 82/163 (50%), Positives = 115/163 (70%), Gaps = 2/163 (1%)
Query: 80 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
+ + AP+F A+ + F V LS Y GK YV+LFFYP+DFTFVCPTEI FSD F
Sbjct: 5 LNHPAPEFDDMALMPNGTFKKVSLSSYKGK-YVVLFFYPMDFTFVCPTEIIQFSDDAKRF 63
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
++NTE++ S DS +SHL W DRK GGLG + P++AD TK+I+++YGVL D G+A
Sbjct: 64 AEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVA 123
Query: 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQEN 241
RG+FIID G ++ IN++ IGR+V+E +R ++ALQ+V+E+
Sbjct: 124 YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEH 166
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 112 bits (280), Expect = 2e-31
Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 80 VGNTAPDFAAEAV------------FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTE 127
+G+ P + A+ F + ++ GK ++FF+P DFTFVCPTE
Sbjct: 5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKW-RVVFFWPKDFTFVCPTE 63
Query: 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187
I AFS EFE + +ILGVS DS F+H W L +P+++DI + +S++
Sbjct: 64 IAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLK---TLPFPMLSDIKRELSQA 120
Query: 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236
GVL D G+A R FI+D IQ + ++GR+VDE LR L ALQ
Sbjct: 121 AGVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ 168
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 94.8 bits (234), Expect = 8e-25
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
VG TAPDF DQ V L Y G K V+L F+PL FT +C E+ D EFE
Sbjct: 4 VGATAPDFTLR---DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE 60
Query: 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK--SISKSYGVLIPDQGI 197
++ L +S +H W +PL++D ++S++YGV GI
Sbjct: 61 NDDSAALAISVGPPPTHKIWATQSG-------FTFPLLSDFWPHGAVSQAYGVFNEQAGI 113
Query: 198 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236
A RG F++D+ G+I+ + + R L AL
Sbjct: 114 ANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 152
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Score = 88.8 bits (219), Expect = 2e-22
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 12/160 (7%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
VG+ A DF+ + L+D+ GKK +L P T +C T+ F++
Sbjct: 15 QLQVGDKALDFSLT---TTDLSKKSLADFDGKK-KVLSVVPSIDTGICSTQTRRFNEELA 70
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
+ NT +L VS D F+ W + D L S + Y +LI +
Sbjct: 71 GLD--NTVVLTVSMDLPFAQKRWCGAEGL-----DNAIMLSDYFDHSFGRDYALLINEWH 123
Query: 197 IALRGLFIIDKEGVIQHSTI-NNLAIGRSVDETLRTLQAL 235
+ R +F++D + I++ +N+ + + + +AL
Sbjct: 124 LLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 88.2 bits (217), Expect = 3e-22
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEF 138
+G APDF +Q+F V L + + + + +L F+P F+ VC E+ F D+ +
Sbjct: 4 LGEKAPDFTLP---NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQL 60
Query: 139 EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD---- 194
EK N E+L +S DS + + L + L++D + + K Y V D
Sbjct: 61 EKANAEVLAISVDSPWCLKKFKDE-------NRLAFNLLSDYNREVIKLYNVYHEDLKGL 113
Query: 195 QGIALRGLFIIDKEGVIQHSTINNLAIGR-SVDETLRTLQALQ 236
+ +A R +FI+ +G + + + + + DE +R +
Sbjct: 114 KMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 156
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Score = 87.2 bits (215), Expect = 8e-22
Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
P VG +F + +V L+D+ K+ +L +P T VC T + F+ + +
Sbjct: 16 PQVGEIVENFILV---GNDLADVALNDFASKR-KVLNIFPSIDTGVCATSVRKFNQQAAK 71
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
NT +L +S D F+ + + + ++ GV I +
Sbjct: 72 LS--NTIVLCISADLPFAQARFCGAEGIEN-----AKTVSTFRNHALHSQLGVDIQTGPL 124
Query: 198 ---ALRGLFIIDKEGVIQHSTI-NNLAIGRSVDETLRTL 232
R + ++D++ + HS + + + + L L
Sbjct: 125 AGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL 163
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.7 bits (211), Expect = 3e-21
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY--TE 137
VG+ P E + V L++ K +LF P FT C
Sbjct: 5 VGDAIPAV--EVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEAL 62
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197
K + +S + F W + + + K L+AD T + K +L+ D +
Sbjct: 63 KAKGVQVVACLSVNDAFVTGEWGRAHK-----AEGKVRLLADPTGAFGKETDLLLDDSLV 117
Query: 198 AL------RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235
++ + ++ ++G+++ + G + + L
Sbjct: 118 SIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 79.2 bits (194), Expect = 8e-19
Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 17/163 (10%)
Query: 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYT 136
P VG+ AP F + + + GK V+L +P T VC T + F +R
Sbjct: 16 LPAVGSPAPAFTLT---GGDLGVISSDQFRGKS-VLLNIFPSVDTPVCATSVRTFDERAA 71
Query: 137 EFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLI---P 193
+ S D F+ + G G + S + YGV I P
Sbjct: 72 ASGATVLCV---SKDLPFAQKRFC------GAEGTENVMPASAFRDSFGEDYGVTIADGP 122
Query: 194 DQGIALRGLFIIDKEGVIQHSTI-NNLAIGRSVDETLRTLQAL 235
G+ R + +I +G + ++ + +A + + L L A
Sbjct: 123 MAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGAT 165
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Score = 79.1 bits (194), Expect = 8e-19
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 15/157 (9%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE 137
P G+ A F ++ +V L + GK+ +L +P T VC + F+ TE
Sbjct: 18 PQAGSKAQTFTLV---AKDLSDVTLGQFAGKR-KVLNIFPSIDTGVCAASVRKFNQLATE 73
Query: 138 FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD--- 194
+ NT +L +S D F+ + + + L ++YGV I D
Sbjct: 74 ID--NTVVLCISADLPFAQSRFCGAEGL-----NNVITLSTFRNAEFLQAYGVAIADGPL 126
Query: 195 QGIALRGLFIIDKEGVIQHSTI-NNLAIGRSVDETLR 230
+G+A R + +ID+ + S + + + + L
Sbjct: 127 KGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAALA 163
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Score = 78.4 bits (192), Expect = 2e-18
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 6/153 (3%)
Query: 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE- 137
+ G P ++++V S+ K VI+F P FT C + +
Sbjct: 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPV 61
Query: 138 --FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ 195
++ ++ D+ + ++ + T+ + G
Sbjct: 62 FKKYGVDDILVVSVNDTFVMNAWKEDEKSEN---ISFIPDGNGEFTEGMGMLVGKEDLGF 118
Query: 196 GIALRGLFIIDKEGVIQHSTINNLAIGRSVDET 228
G ++ K GV++ I G +
Sbjct: 119 GKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVS 151
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.2 bits (173), Expect = 6e-16
Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 17/167 (10%)
Query: 75 EIPPL-VGNTAPDFAAEAVFDQEFINVKLSDYIG-KKYVILFFYPLDFTFVCPTEITAFS 132
++ L +G+ PD + +++ ++ L + V+ F YP T + + F
Sbjct: 1 DVNELEIGDPIPDLSLL---NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFR 57
Query: 133 DRYTEFEKLNTEILGVSTDSVFSHLAWVQ-TDRKSGGLGDLKYPLIADITKSISKSYGVL 191
D Y E ++ +VF A + +K +L Y L++D + G
Sbjct: 58 DNYQELKE---------YAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAK 108
Query: 192 IPDQGIALRGLFII-DKEGVIQHSTIN-NLAIGRSVDETLRTLQALQ 236
++R FI D + + I+ +++ + E L + +
Sbjct: 109 KTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK 155
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Score = 64.9 bits (157), Expect = 1e-13
Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 4/142 (2%)
Query: 80 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE- 137
VG+ PD + V + + K VILF P FT C +
Sbjct: 6 VGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGE 65
Query: 138 -FEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG 196
K TEIL +S + F AW ++ ++ + L +
Sbjct: 66 LKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGT 125
Query: 197 IALRGLFIIDKEGVIQHSTINN 218
+ R ++D + ++ + I
Sbjct: 126 RSRRFALLVD-DLKVKAANIEG 146
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 44.6 bits (104), Expect = 2e-06
Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 13/152 (8%)
Query: 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNT 143
PD A E D + KLSD+ GK ++ + + C E+ A + + N
Sbjct: 36 LPDLAFE---DADGKPKKLSDFRGKTLLVNLWAT--WCVPCRKEMPALDELQGKLSGPNF 90
Query: 144 EILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLF 203
E++ ++ D+ + D + + + G+
Sbjct: 91 EVVAINIDTRDPEKPKTFLKEA----NLTRLGYFNDQKAKVFQDLKAIGRALGM--PTSV 144
Query: 204 IIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235
++D +G + + ++ L+ ++A
Sbjct: 145 LVDPQGCEIATIAG--PAEWASEDALKLIRAA 174
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 4e-06
Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 18/170 (10%)
Query: 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPL--DFTFVCPTEITAFSDRY 135
P +G F E D + +GK +I F + D ++ + +
Sbjct: 3 PSLG---GPFHLE---DMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTL 56
Query: 136 TEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ 195
+ + + L ++ D A ++ L D K+ K Y V
Sbjct: 57 SSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTP 116
Query: 196 G----------IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235
+++D EG + N VD+ + +++
Sbjct: 117 PNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 42.2 bits (98), Expect = 9e-06
Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 13/138 (9%)
Query: 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139
+ P+ E + V IG+K ++ F+ + C A +
Sbjct: 3 LRQPMPELTGEKAWLNG--EVTREQLIGEKPTLIHFW----SISCHLCKEAMPQVNEFRD 56
Query: 140 KLNTEILGVSTDSVFSH-LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA 198
K ++ V+ S +++ D+ P+ D +++ ++
Sbjct: 57 KYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFEN------EY 110
Query: 199 LRGLFIIDKEGVIQHSTI 216
+ ++ DK G ++H
Sbjct: 111 VPAYYVFDKTGQLRHFQA 128
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.3 bits (98), Expect = 9e-06
Identities = 23/155 (14%), Positives = 37/155 (23%), Gaps = 21/155 (13%)
Query: 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK 140
+ F A + F + GK V+ F+ P +
Sbjct: 1 ADERLQFTATTLSGAPF---DGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVT 57
Query: 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALR 200
+ A V + +L + + D I Y V
Sbjct: 58 FVG----------IATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNV------PWQP 101
Query: 201 GLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235
+G +NN S DE + AL
Sbjct: 102 AFVFYRADGTSTF--VNNPTAAMSQDELSGRVAAL 134
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Score = 40.7 bits (94), Expect = 5e-05
Identities = 22/174 (12%), Positives = 58/174 (33%), Gaps = 18/174 (10%)
Query: 75 EIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR 134
+I + F + +Q+ NV L G+ ++ F + T CP +D
Sbjct: 2 QIKDPLNYEVEPFTFQ---NQDGKNVSLESLKGEVWLADFIFTNCETI-CPPMTAHMTDL 57
Query: 135 YTEFEKLNTEILGVSTDSVFSHLAW--VQTDRKSGGLGDLKYPLIADITKSISKSYGVLI 192
+ + N ++ +S + ++ + L + + ++S + + +
Sbjct: 58 QKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKS 117
Query: 193 ----------PDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236
DQ I +++ +G + N D+ + +++
Sbjct: 118 FKAIVKKPEGEDQVIHQSSFYLVGPDGKVLK--DYNGVENTPYDDIISDVKSAS 169
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 40.1 bits (93), Expect = 7e-05
Identities = 25/149 (16%), Positives = 59/149 (39%), Gaps = 16/149 (10%)
Query: 73 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFS 132
+V++ V N + + +F ++ + K ++L P FT C T++
Sbjct: 8 NVKVMIDVRNMNNISDTDGSPN-DFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGY 66
Query: 133 DRYTEF---EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189
+ ++ E +I ++ + ++ +W KS + +KY I+D S + S
Sbjct: 67 EEEYDYFIKENNFDDIYCITNNDIYVLKSW----FKSMDIKKIKY--ISDGNSSFTDSMN 120
Query: 190 VLIPDQGI-----ALRGLFIIDKEGVIQH 213
+L+ R + I++ ++
Sbjct: 121 MLVDKSNFFMGMRPWRFVAIVE-NNILVK 148
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 38.0 bits (87), Expect = 3e-04
Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 8/117 (6%)
Query: 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159
+ K +I F+ + + + + ++ V++
Sbjct: 16 ASVYLKKDKPTLIKFWASWCPLCLSELGQ--TEKWAQDAKFSSANLITVASPGFLHEKKD 73
Query: 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216
+ GL K P++ D +I++S + +I K+G +Q
Sbjct: 74 GDFQKWYAGLNYPKLPVVTDNGGTIAQSLNI------SVYPSWALIGKDGDVQRIVK 124
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 271 | |||
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 100.0 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 100.0 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 100.0 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 100.0 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 100.0 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 100.0 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 100.0 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 100.0 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 100.0 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 100.0 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 100.0 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.98 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.97 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.97 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.96 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.95 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.95 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.95 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.95 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.94 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.94 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.92 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.92 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.92 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.91 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.89 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.88 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 99.88 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.87 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.86 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.86 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 99.85 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.85 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.84 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 99.79 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.74 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.73 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.69 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.23 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.22 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.19 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.17 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.16 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.15 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.14 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.12 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.1 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.09 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.08 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.08 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.08 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.07 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.04 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.02 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.02 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 98.99 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 98.98 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 98.94 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 98.9 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.87 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 98.86 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 98.85 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 98.75 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 98.66 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.58 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.5 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.42 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 98.31 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.19 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.16 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.86 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 97.71 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.18 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.03 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 96.92 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 96.64 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 96.64 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 96.06 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 95.32 | |
| d1pn0a2 | 201 | Phenol hydroxylase, C-terminal domain {Soil-living | 94.07 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 93.63 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 90.79 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 90.58 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 90.15 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 88.59 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 88.22 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 87.27 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 86.36 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 80.89 |
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.9e-45 Score=305.57 Aligned_cols=190 Identities=55% Similarity=0.987 Sum_probs=180.9
Q ss_pred CCCCCCCCeEEeee-cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 79 LVGNTAPDFAAEAV-FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~-~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
..|.+||||+++.+ .|.+|++++|+||+|| ++||+||+++|||+|..+++.|++++++|++.|++||+||.|+.+.++
T Consensus 4 e~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK-~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~ 82 (194)
T d1uula_ 4 EDLHPAPDFNETALMPNGTFKKVALTSYKGK-WLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHL 82 (194)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTS-EEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred ccCCCCCCCcccccccCCCCcEEehHHhCCC-eEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhh
Confidence 46899999998763 3789999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+.+++..++.+++||+++|.+++++++||+.....|+..|.+||||++|+|+++++++...+++++|+|+.|++||.
T Consensus 83 ~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~alQ~ 162 (194)
T d1uula_ 83 AWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQF 162 (194)
T ss_dssp HHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHhhh
Confidence 99999988888888999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
..++ ++.||++|++|+++|.|+++++++||++
T Consensus 163 ~~~~-~~~cp~~W~~g~~~~~p~~~~~~~~~~~ 194 (194)
T d1uula_ 163 VEKH-GEVCPANWKPGDKTMKPDPEKSKEYFGA 194 (194)
T ss_dssp HHHH-SCBBCTTCCTTSCCBCSSTGGGHHHHCC
T ss_pred Hhhc-CCCcCCCCCCCCccccCCHHHHHHHhcC
Confidence 9988 8999999999999999999999999985
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-44 Score=299.86 Aligned_cols=191 Identities=62% Similarity=1.096 Sum_probs=183.5
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+++|+++|+|+|+++.|.+|+.++|+|++|| ++||+|||+.|||+|..++..|++++++|++.|++|++||.|+.+.++
T Consensus 5 ~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk-~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~ 83 (197)
T d1qmva_ 5 ARIGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHL 83 (197)
T ss_dssp BCTTSBCCCCEEEEEETTEEEEEEGGGGTTS-EEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CcCCCcCCCCCCcceeCCCCcEEeHHHhCCC-eEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHH
Confidence 7899999999999888999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+++.+..++.+++||+++|.+++++++||+.....|+..|.+||||++|+|++...++...+++++|+|+.|++||.
T Consensus 84 ~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~alq~ 163 (197)
T d1qmva_ 84 AWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQY 163 (197)
T ss_dssp HHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhhcc
Confidence 99999988888888999999999999999999998878888999999999999999999999999999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
..++ ++.||++|+||+++|.|+....++||+.
T Consensus 164 ~~~~-g~~cp~~W~pG~~~~~p~~~~~~~~~~~ 195 (197)
T d1qmva_ 164 TDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFSK 195 (197)
T ss_dssp HHHH-CCBBCTTCCTTSCCBCSSHHHHHHHHHH
T ss_pred cccc-CcCcCCCCCCCCccccCCHHHHHHhhhh
Confidence 9988 8999999999999999999999999973
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.6e-42 Score=284.04 Aligned_cols=180 Identities=37% Similarity=0.740 Sum_probs=169.0
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
.+|+++|+|+++.+.|.+++.++|+||+|| ++||+||+++|||.|..+++.|++.+++|++.|+++++||+|+.+.+++
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk-~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~ 80 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 80 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTS-EEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCC-eEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHH
Confidence 489999999999877888889999999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHh
Q 024201 159 WVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYV 238 (271)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~ 238 (271)
|.+.+... .+++||+++|.+++++++||+.....|+..|.+||||++|+|++.++++...+++++|+|+.|++||+.
T Consensus 81 f~~~~~~~---~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ~~ 157 (186)
T d1n8ja_ 81 WHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYV 157 (186)
T ss_dssp HHHHCTTG---GGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHH
T ss_pred Hhcccccc---ccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHHHH
Confidence 99987432 258999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred hhCCCcccCCCCCCCCCCCCCCch
Q 024201 239 QENPDEVCPAGWKPGDKSMKPDPK 262 (271)
Q Consensus 239 ~~~~~~~~p~~~~~~~~~~~~~~~ 262 (271)
++++++.||++|+|||+.|.|+..
T Consensus 158 ~~~~g~~~p~~W~~g~~~~~~~~~ 181 (186)
T d1n8ja_ 158 AAHPGEVCPAKWKEGEATLAPSLD 181 (186)
T ss_dssp HHSTTCBBCTTCCTTSCCBCCSST
T ss_pred HhcCCeEeCCCCCCCCceeccCch
Confidence 999999999999999999998854
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-40 Score=278.20 Aligned_cols=186 Identities=31% Similarity=0.531 Sum_probs=166.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
|.+|+++|||+++ +.+|+ ++|+|++|++++||+|||+.|||+|..++..|++.+++|+++|+++++||+|+.+.+.
T Consensus 1 L~VGd~APdF~l~---~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~ 76 (220)
T d1prxa_ 1 LLLGDVAPNFEAN---TTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL 76 (220)
T ss_dssp CCTTCBCCCCEEE---ETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CCCCCCCCCcEee---cCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchh
Confidence 5699999999998 55665 9999999977999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh---cCCCCCcccceEEcCChHHHHHhCCccCCC------CccceEEEEEcCCCcEEEEEeccCCCCCCHHHH
Q 024201 158 AWVQTDRK---SGGLGDLKYPLIADITKSISKSYGVLIPDQ------GIALRGLFIIDKEGVIQHSTINNLAIGRSVDET 228 (271)
Q Consensus 158 ~~~~~~~~---~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~------g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~ 228 (271)
+|.+.+.. ..+..+++||+++|.+.+++++||+..+.. ++..|.+||||++|+|++..+++...+++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEi 156 (220)
T d1prxa_ 77 AWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEI 156 (220)
T ss_dssp HHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHH
T ss_pred hhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHH
Confidence 99887543 344557899999999999999999986653 246899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCcccCCCCCCCCCCCCCCc---hhhHHHh
Q 024201 229 LRTLQALQYVQENPDEVCPAGWKPGDKSMKPDP---KLSKEYF 268 (271)
Q Consensus 229 l~~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~ 268 (271)
|+.|++||...++ ++.||++|+|||++|.+.. ..-+++|
T Consensus 157 Lr~l~alq~~~~~-~~~~PanW~pGd~~~~~p~~~~~~~~~~~ 198 (220)
T d1prxa_ 157 LRVVISLQLTAEK-RVATPVDWKDGDSVMVLPTIPEEEAKKLF 198 (220)
T ss_dssp HHHHHHHHHHHHH-CEEBCTTCCTTSCEEECTTSCHHHHHHHC
T ss_pred HHHHHHHhhhhcC-CcCcCCCCCCCCceecCCCCCHHHHHHhc
Confidence 9999999999987 8999999999999998743 3345555
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=1.7e-39 Score=274.35 Aligned_cols=179 Identities=30% Similarity=0.505 Sum_probs=162.4
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|||++++. +.+| .++|+++.+++++||+|||+.|||+|..|+..|++.+++|+++|+++++||.|+.+.++
T Consensus 2 i~iGd~aPdF~l~~~-~~~g-~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~ 79 (219)
T d1xcca_ 2 YHLGATFPNFTAKAS-GIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHD 79 (219)
T ss_dssp CCTTCBCCCCEECBT-TCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CcCCCCCCCcEeecc-CCCC-cEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHh
Confidence 679999999999843 2233 68999985555999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC------ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG------IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g------~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
+|.+.+.+.++..+++||+++|.+.+++++||+..+..+ +..|.+||||++|+|++.++++..++++++|+|+.
T Consensus 80 ~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~ 159 (219)
T d1xcca_ 80 KWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRV 159 (219)
T ss_dssp HHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred HHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHH
Confidence 999999888888889999999999999999999865422 35699999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcccCCCCCCCCCCCCC
Q 024201 232 LQALQYVQENPDEVCPAGWKPGDKSMKP 259 (271)
Q Consensus 232 l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 259 (271)
|++||...++ ++.||++|+||++++.+
T Consensus 160 l~aLQ~~~~~-~~~~PanW~~G~~~~~~ 186 (219)
T d1xcca_ 160 LKSLQLTYTT-PVATPVNWNEGDKCCVI 186 (219)
T ss_dssp HHHHHHHHHS-SEEBCTTCCTTSCEEEC
T ss_pred HHHHHHHHhC-CCCcCCCCCCCCceeeC
Confidence 9999999999 79999999999988754
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=100.00 E-value=1.5e-37 Score=252.81 Aligned_cols=164 Identities=43% Similarity=0.776 Sum_probs=152.3
Q ss_pred CCCCCCCCeEEeeecC-CCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 79 LVGNTAPDFAAEAVFD-QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~-~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
.+|+++|+|+++++.+ .++++++|++|+|| ++||+||++.|||+|..+++.|++++++|+++|++||+||.|+.+.++
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK-~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~ 80 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGK-WSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHK 80 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSS-EEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCC-eEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHH
Confidence 4899999999997764 67889999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+++.... +++||++.|++++++++||+.....|+..|++||||++|+|++.++++...+++++|+++.|++||+
T Consensus 81 ~~~~~~~~~~---~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal~~ 157 (166)
T d1we0a1 81 AWHENSPAVG---SIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY 157 (166)
T ss_dssp HHHHSCHHHH---TCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred HHhhhhhhhc---ccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhcch
Confidence 9998764332 5799999999999999999988888888999999999999999999988889999999999999999
Q ss_pred hhhCCCccc
Q 024201 238 VQENPDEVC 246 (271)
Q Consensus 238 ~~~~~~~~~ 246 (271)
+.+|+++.|
T Consensus 158 ~~~~~g~~c 166 (166)
T d1we0a1 158 VRENPGEVC 166 (166)
T ss_dssp HHTSTTCCC
T ss_pred hhhcCCCCC
Confidence 999999998
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=1.4e-37 Score=265.40 Aligned_cols=181 Identities=34% Similarity=0.666 Sum_probs=158.9
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccc---cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDY---IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~---~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
.+|+++|+|++. +.+| .++++++ +|| ++||+||+++|||+|..+++.|++++++|+++|+++|+||+|+.+.
T Consensus 2 lIGd~aPdF~l~---t~~G-~i~~~d~~~~kGk-~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~s 76 (237)
T d2zcta1 2 LIGERFPEMEVT---TDHG-VIKLPDHYVSQGK-WFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFS 76 (237)
T ss_dssp CTTSBCCCEEEE---ETTE-EEEETHHHHTTTC-EEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred CCCCCCCCeEEE---cCCC-CEEechHhhcCCC-EEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHH
Confidence 489999999998 5566 4777775 677 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC-ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG-IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g-~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+++|.+.....++ .+++||+++|.+.+++++||+...+.+ ...|++||||+||+|++..+++...+++++|+|+.|++
T Consensus 77 h~~w~~~~~~~~~-~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~a 155 (237)
T d2zcta1 77 HIKWKEWIERHIG-VRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKA 155 (237)
T ss_dssp HHHHHHHHHHHHC-CCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred HHHHhhhhhhhcc-cccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 9999987654433 378999999999999999999755443 46899999999999999999999999999999999999
Q ss_pred HHHhhhCCCcccCCCCCC----CCCCCCCCchhhHH
Q 024201 235 LQYVQENPDEVCPAGWKP----GDKSMKPDPKLSKE 266 (271)
Q Consensus 235 l~~~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~ 266 (271)
||...++ ++.||++|+| |++++.|.+...++
T Consensus 156 LQ~~~~~-~~~~Pa~W~~~~~~g~~~~~~~~~~~~~ 190 (237)
T d2zcta1 156 LKLGDSL-KRAVPADWPNNEIIGEGLIVPPPTTEDQ 190 (237)
T ss_dssp HHHHHHH-TCBBCTTTTSBTTTBTCEECCCCCSHHH
T ss_pred HhhhccC-CcCCcCCCCCCCCCCCCEEeCCCCCHHH
Confidence 9988888 8999999998 89999988766554
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=100.00 E-value=4.4e-37 Score=250.99 Aligned_cols=169 Identities=56% Similarity=0.990 Sum_probs=156.7
Q ss_pred CCCCeEEeeec-CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHH
Q 024201 83 TAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 161 (271)
Q Consensus 83 ~~Pdf~l~~~~-~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~ 161 (271)
+||||+|+++. +.+++.++|+|++|++++||+|||++|||+|..++..|++.+++|++.|++||+||.|+.+.+++|.+
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~ 80 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKK 80 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhh
Confidence 58999999776 47888999999999779999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHhhhC
Q 024201 162 TDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQEN 241 (271)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~~~~ 241 (271)
.......+.+++|++++|.++++++.||+... .++..|.+||||++|+|++.++++...+++++++|+.|++||..+++
T Consensus 81 ~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~-~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~lq~~~~~ 159 (170)
T d2h01a1 81 TPLSQGGIGNIKHTLISDISKSIARSYDVLFN-ESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKY 159 (170)
T ss_dssp SCGGGTCCCSCSSEEEECTTSHHHHHTTCEET-TTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCceeEcCccHHHHHhCCccc-cccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhhhhc
Confidence 88777777789999999999999999999643 45678999999999999999988888889999999999999988888
Q ss_pred CCcccCCCCCCC
Q 024201 242 PDEVCPAGWKPG 253 (271)
Q Consensus 242 ~~~~~p~~~~~~ 253 (271)
++.||++|+||
T Consensus 160 -~~~~~~~w~~g 170 (170)
T d2h01a1 160 -GDVCPANWQKG 170 (170)
T ss_dssp -CCCCCSSCCCC
T ss_pred -CCccCCCCCCC
Confidence 69999999997
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=1.3e-36 Score=248.28 Aligned_cols=168 Identities=49% Similarity=0.830 Sum_probs=154.7
Q ss_pred CCCCCCCCCeEEeeecCC--CceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQ--EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~--~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
+.||++||||+++++++. .++.++|+|++||+++||+|||++|||.|..+++.|++.+++|+++|++||+||.|+.+.
T Consensus 1 ~lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~ 80 (170)
T d1zofa1 1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQV 80 (170)
T ss_dssp CCTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred CCCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhh
Confidence 358999999999987643 246899999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+++|.+.+...+.+.+++|++++|.+.++.++||+... .|+..|++||||+||+|++.++++...+++++++|+.|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~-~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL 159 (170)
T d1zofa1 81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159 (170)
T ss_dssp HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEET-TTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccccCcccccccccccHHHHHcCCCcc-ccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 99999998777777789999999999999999999754 46678999999999999999888888889999999999999
Q ss_pred HHhhhCCCcccC
Q 024201 236 QYVQENPDEVCP 247 (271)
Q Consensus 236 ~~~~~~~~~~~p 247 (271)
|+..++ ++.||
T Consensus 160 q~~~~~-~~~~p 170 (170)
T d1zofa1 160 LHFEEH-GEVCP 170 (170)
T ss_dssp HHHHSS-CCCCC
T ss_pred hhHHhc-CCcCc
Confidence 999999 99998
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=100.00 E-value=2.7e-35 Score=239.48 Aligned_cols=163 Identities=50% Similarity=0.924 Sum_probs=152.1
Q ss_pred CCCCCCCCCeEEeee-cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAV-FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~-~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+++|++||||++..+ .|.+|+.++|+||+|| ++||+||+++|||+|..+++.|++++++|+++|+++++||.|+.+.+
T Consensus 3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK-~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~ 81 (167)
T d1e2ya_ 3 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGK-YVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSH 81 (167)
T ss_dssp CCTTSBCCCCEEEEECSSSCEEEEEGGGGTTS-EEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred ccCCCCCCCCcccccccCCCCcEEeHHHHCCC-eEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhH
Confidence 679999999997653 4889999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+|.+.+.........+|+++.|.++++++.||+.....|+..|++||||++|+|+++++++...+++++|+|+.|++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~alq 161 (167)
T d1e2ya_ 82 LQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQ 161 (167)
T ss_dssp HHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence 99999887777666789999999999999999998777788899999999999999999888888899999999999999
Q ss_pred HhhhC
Q 024201 237 YVQEN 241 (271)
Q Consensus 237 ~~~~~ 241 (271)
+.+++
T Consensus 162 ~~~~~ 166 (167)
T d1e2ya_ 162 FVEEH 166 (167)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99987
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.1e-35 Score=235.49 Aligned_cols=157 Identities=57% Similarity=1.033 Sum_probs=148.5
Q ss_pred CCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 161 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~ 161 (271)
++||+|+++++.|.+|+.++|+||+|| ++||+|||++|||+|..+++.|++++++|.+.|++|++||.|+.+.+++|.+
T Consensus 1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk-~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~ 79 (158)
T d1zyea1 1 QHAPYFKGTAVVSGEFKEISLDDFKGK-YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWIN 79 (158)
T ss_dssp SBCCCCEEEEECSSSEEEEEGGGGTTS-EEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred CCCCCCccceeeCCCccEEeHHHhCCC-eEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHh
Confidence 479999999888999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHhh
Q 024201 162 TDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQ 239 (271)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~~ 239 (271)
........++++|++++|.+.++++.||+.....|+..|++||||++|+|++.++++...+++++|+|+.|++||+++
T Consensus 80 ~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkalq~~~ 157 (158)
T d1zyea1 80 TPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE 157 (158)
T ss_dssp SCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHTT
T ss_pred hhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhhh
Confidence 987776667899999999999999999999888888899999999999999999898889999999999999999875
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2e-33 Score=228.74 Aligned_cols=154 Identities=40% Similarity=0.706 Sum_probs=139.3
Q ss_pred CCCCCCCCCeEEeeecCC------------CceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEE
Q 024201 78 PLVGNTAPDFAAEAVFDQ------------EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEI 145 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~------------~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~v 145 (271)
+++|+++|+|+|++..+. .|+.++|++++|| ++||+||+++|||+|..+++.|.+++++|+++|+++
T Consensus 3 l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK-~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~v 81 (169)
T d2bmxa1 3 LTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGK-WRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI 81 (169)
T ss_dssp CCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTC-EEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred CCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCC-eEEEEEecCCCCccccccccccccccccccccCcce
Confidence 789999999999976552 3479999999998 899999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCH
Q 024201 146 LGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSV 225 (271)
Q Consensus 146 v~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~ 225 (271)
|+||.|+.+.+.+|.+.+.... .++|++++|.+++++++||+.. ..+...|++||||++|+|++.++++...++++
T Consensus 82 v~is~d~~~~~~~~~~~~~~~~---~~~f~ll~D~~~~v~~~ygv~~-~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~ 157 (169)
T d2bmxa1 82 LGVSIDSEFAHFQWRAQHNDLK---TLPFPMLSDIKRELSQAAGVLN-ADGVADRVTFIVDPNNEIQFVSATAGSVGRNV 157 (169)
T ss_dssp EEEESSCHHHHHHHHHHCTTGG---GCCSCEEECTTSHHHHHHTCBC-TTSSBCEEEEEECTTSBEEEEEEECTTCCCCH
T ss_pred eeccccchhhhhhhcccccccc---cceEEEEeccHHHHHHHcCCCc-cCCccceeEEEEcCCCEEEEEEEcCCCCCCCH
Confidence 9999999999999999874332 5899999999999999999963 34567899999999999999998888888999
Q ss_pred HHHHHHHHHHH
Q 024201 226 DETLRTLQALQ 236 (271)
Q Consensus 226 ~e~l~~l~~l~ 236 (271)
+|+++.|++||
T Consensus 158 ~evl~~l~alq 168 (169)
T d2bmxa1 158 DEVLRVLDALQ 168 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999987
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.98 E-value=8.8e-32 Score=215.23 Aligned_cols=149 Identities=34% Similarity=0.594 Sum_probs=136.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+++|+++|+|+++ +.+|++++|++++|++++||+||+++|||+|+.+++.|++++++++++|++|++||.|+.+.++
T Consensus 2 l~vG~~aPdF~l~---d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~ 78 (153)
T d1xvwa1 2 LNVGATAPDFTLR---DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHK 78 (153)
T ss_dssp CCTTSBCCCCEEE---CTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHH
T ss_pred CCCcCCCcCeEEE---CCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHH
Confidence 7899999999998 8889999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcC--ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADI--TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~--~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+|.+.+ +++|+++.|. ++++++.||+.....|+..|++||||++|+|++.++.+....+...++.+.|++|
T Consensus 79 ~~~~~~-------~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL 151 (153)
T d1xvwa1 79 IWATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 151 (153)
T ss_dssp HHHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred HHhhhh-------ccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhh
Confidence 999998 7899999876 5889999999887778888999999999999999887777777888888888876
Q ss_pred H
Q 024201 236 Q 236 (271)
Q Consensus 236 ~ 236 (271)
+
T Consensus 152 ~ 152 (153)
T d1xvwa1 152 T 152 (153)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=5.4e-31 Score=217.80 Aligned_cols=158 Identities=16% Similarity=0.260 Sum_probs=130.5
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d------ 151 (271)
+++|+++|||+|. +.+|+.++|++++|| ++||+|| ++|||+|+.++|.|.+++++|++ ++.+|+|+.+
T Consensus 6 l~vG~~aPdF~l~---d~~G~~~~Lsd~kGk-~vvl~Fw-atwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~ 79 (187)
T d2cvba1 6 LPLESPLIDAELP---DPRGGRYRLSQFHEP-LLAVVFM-CNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYP 79 (187)
T ss_dssp CCTTCBCCCCEEE---CTTSCEEEGGGCCSS-EEEEEEE-CSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCG
T ss_pred CCCCCccCccEee---cCCCCEEEHHHhCCC-eEEEEEe-CCCCccchhhhhhhhhhhhhccc-cceeeeeecccccccc
Confidence 7799999999998 678889999999998 8999999 99999999999999999999986 5999998653
Q ss_pred --CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCC----CCH
Q 024201 152 --SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG----RSV 225 (271)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~----~~~ 225 (271)
+.+.++++.+.+ +++|+++.|.++++++.||+. .+|++||||++|+|+++-.-+.... ...
T Consensus 80 ~~~~e~~~~~~~~~-------~~~~p~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~ 146 (187)
T d2cvba1 80 EDAPEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQS 146 (187)
T ss_dssp GGSHHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEEECSSSCTTCGGGCCC
T ss_pred ccchHHHHHHHHHh-------CCcceeeechhhhhccccccc------ceeeEEEEcCCCeEEEEeeecCCCCCCCCCCH
Confidence 345667788877 789999999999999999999 9999999999999999743222211 122
Q ss_pred HHHHHHHHHHHHh-----hhCCCcccCCCCCCCC
Q 024201 226 DETLRTLQALQYV-----QENPDEVCPAGWKPGD 254 (271)
Q Consensus 226 ~e~l~~l~~l~~~-----~~~~~~~~p~~~~~~~ 254 (271)
.++.++|+++... ...+..+|.++||||-
T Consensus 147 ~~L~~Ai~~ll~g~~~~~~~t~~~GC~ik~~~~~ 180 (187)
T d2cvba1 147 HDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN 180 (187)
T ss_dssp CHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred HHHHHHHHHHHcCCCCCccccCCCCcceeECCCC
Confidence 4566666666433 3555799999999985
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.97 E-value=6.1e-31 Score=211.52 Aligned_cols=148 Identities=28% Similarity=0.543 Sum_probs=132.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc--cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY--IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~--~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
+++|+++|+|+|+ +.+|+.++|+++ +|| ++||+||+++|||+|..+++.|+++++++++.|+.+|+|+.|+++.
T Consensus 2 i~vG~~aPdF~L~---~~~G~~~~Lsd~~~~gk-~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~ 77 (160)
T d2cx4a1 2 VELGEKAPDFTLP---NQDFEPVNLYEVLKRGR-PAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWC 77 (160)
T ss_dssp CCTTSBCCCCEEC---CTTSCCEEHHHHHTTSS-CEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHH
T ss_pred CcCCCCCcCeEeE---CCCCCEEehHHHhhCCC-EEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhh
Confidence 7899999999998 788889999998 677 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC----CccceEEEEEcCCCcEEEEEeccCCCC-CCHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ----GIALRGLFIIDKEGVIQHSTINNLAIG-RSVDETLR 230 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~----g~~~P~~~lID~~G~V~~~~~~~~~~~-~~~~e~l~ 230 (271)
+++|.+.+ +++|+++.|.+.+++++||+..... +...|++||||++|+|++++++....+ .+++++++
T Consensus 78 ~~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~ 150 (160)
T d2cx4a1 78 LKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVR 150 (160)
T ss_dssp HHHHHHHH-------TCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHH
T ss_pred hhhhcccc-------eeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHH
Confidence 99999998 8899999999999999999975431 135789999999999999988755444 47999999
Q ss_pred HHHHHH
Q 024201 231 TLQALQ 236 (271)
Q Consensus 231 ~l~~l~ 236 (271)
.++++.
T Consensus 151 ~l~~l~ 156 (160)
T d2cx4a1 151 EANKIA 156 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998774
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.9e-28 Score=198.26 Aligned_cols=148 Identities=25% Similarity=0.417 Sum_probs=124.4
Q ss_pred eeecccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE
Q 024201 69 VVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (271)
Q Consensus 69 ~~~~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 148 (271)
.++..+.+ +++|+++|+|+|. +.+|+.++|++|+|| ++||+||++.|||+|..+++.|++++.+++ |+++|+|
T Consensus 10 p~~~~g~~-~~vG~~APdF~L~---~~~g~~vsLsd~~GK-~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~I 82 (164)
T d1qxha_ 10 PVTVANSI-PQAGSKAQTFTLV---AKDLSDVTLGQFAGK-RKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCI 82 (164)
T ss_dssp EEEECSCC-CCTTSBCCCCEEE---CTTSCEEEGGGGTTS-EEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEE
T ss_pred cEecCCCc-CCCCCCCCCeEEE---CCCCCEEeHHHhCCC-eEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeE
Confidence 45556666 8999999999998 788999999999999 899999999999999999999999988764 8999999
Q ss_pred eCCCHHHHHHHHHHhhhcCCCCCcccceEE--cCChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEecc-CCCC
Q 024201 149 STDSVFSHLAWVQTDRKSGGLGDLKYPLIA--DITKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINN-LAIG 222 (271)
Q Consensus 149 S~d~~~~~~~~~~~~~~~~~~~~~~f~~l~--D~~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~-~~~~ 222 (271)
|.|+++.+++|.+.+ ++.++++. |.+.++++.||+.... .|+..|++||||++|+|++.++.+ ....
T Consensus 83 s~d~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~ 155 (164)
T d1qxha_ 83 SADLPFAQSRFCGAE-------GLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTE 155 (164)
T ss_dssp ESSCHHHHTTCCSST-------TCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSC
T ss_pred EcCCHHHHHHHHHHh-------CCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcCCCCCC
Confidence 999999998888876 66777665 5579999999997554 456779999999999999997754 3344
Q ss_pred CCHHHHHH
Q 024201 223 RSVDETLR 230 (271)
Q Consensus 223 ~~~~e~l~ 230 (271)
.+.+++|+
T Consensus 156 pd~d~~l~ 163 (164)
T d1qxha_ 156 PDYEAALA 163 (164)
T ss_dssp CCHHHHTC
T ss_pred CCHHHhhc
Confidence 57776653
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=5.1e-28 Score=195.47 Aligned_cols=149 Identities=23% Similarity=0.417 Sum_probs=126.9
Q ss_pred ccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 73 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 73 ~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.+.. +++|+++|+|+|. +.+|++++|++|+|| ++||+||++.|||+|..+++.|.+.+.+++ |+.+++||.|+
T Consensus 12 ~g~~-l~vG~~aPdF~L~---~~~g~~vsLsd~~gk-~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~ 84 (163)
T d1psqa_ 12 TGKQ-LQVGDKALDFSLT---TTDLSKKSLADFDGK-KKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDL 84 (163)
T ss_dssp SSCC-CCTTSBCCCCEEE---CTTSCEEEGGGGTTS-EEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESSC
T ss_pred CCCC-CCCCCCCCCeEEE---CCCCCEEehHHhCCc-EEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEecc
Confidence 3444 8999999999998 788999999999999 899999999999999999999999888885 79999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccc-ceEEc-CChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEecc-CCCCCCHHHHH
Q 024201 153 VFSHLAWVQTDRKSGGLGDLKY-PLIAD-ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINN-LAIGRSVDETL 229 (271)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~f-~~l~D-~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~-~~~~~~~~e~l 229 (271)
++.+.+|.+.+ +..+ .++.| .+..+++.||+.....++..|++||||++|+|++.++.+ ...+.++++++
T Consensus 85 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il 157 (163)
T d1psqa_ 85 PFAQKRWCGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAI 157 (163)
T ss_dssp HHHHHHHHHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHH
T ss_pred HHHHHHHHHHc-------CCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHH
Confidence 99999999987 3343 33433 568999999998777777778999999999999997654 34455889999
Q ss_pred HHHHHH
Q 024201 230 RTLQAL 235 (271)
Q Consensus 230 ~~l~~l 235 (271)
+.|++|
T Consensus 158 ~alk~L 163 (163)
T d1psqa_ 158 AAAKAL 163 (163)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998865
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.1e-28 Score=192.97 Aligned_cols=147 Identities=20% Similarity=0.352 Sum_probs=120.5
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCC-cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gk-k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+++|+++|+|+|+ +.+|+.++|+++.|+ +++|++|||++|||.|..+++.|.+.+++|++ ++.+++||.|+.+.+
T Consensus 5 L~vG~~aP~f~L~---~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~~~ 80 (156)
T d2a4va1 5 LEIGDPIPDLSLL---NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQ 80 (156)
T ss_dssp CCTTCBCCSCEEE---CTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHHHH
T ss_pred CCCCCCCCCeEEE---CCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhhhH
Confidence 7899999999998 788889999999654 37788889999999999999999999999975 677999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCC---CCCCHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA---IGRSVDETLRTLQ 233 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~---~~~~~~e~l~~l~ 233 (271)
++|.+.+ +++|++++|++++++++||+.....+...+++ +|+.||+|++++++..+ ...+++++++.|+
T Consensus 81 ~~f~~~~-------~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~-~i~~dg~i~~~~~~~~~~~~~~~~~~evl~~lk 152 (156)
T d2a4va1 81 KKFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLSGSIRSH-FIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAE 152 (156)
T ss_dssp HHHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSSSCBCCEE-EEEETTEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred Hhhhccc-------CccceeccchHHHHHHHcCCCccccCCeeEEE-EEEECCeEEEEEEEeCCCCCcchHHHHHHHHHH
Confidence 9999998 88999999999999999999855433333444 44479999999875332 2234566777776
Q ss_pred HHH
Q 024201 234 ALQ 236 (271)
Q Consensus 234 ~l~ 236 (271)
+|+
T Consensus 153 ~l~ 155 (156)
T d2a4va1 153 KFK 155 (156)
T ss_dssp HTT
T ss_pred Hhc
Confidence 653
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.95 E-value=1.3e-27 Score=193.32 Aligned_cols=149 Identities=21% Similarity=0.385 Sum_probs=124.5
Q ss_pred eecccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEe
Q 024201 70 VKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVS 149 (271)
Q Consensus 70 ~~~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS 149 (271)
+...+.+ +++|+++|+|+|. +.+|+.++|++++|| ++||+||++.|||.|..+++.|++.+++++ |+.+++||
T Consensus 9 ~~~~g~~-p~vG~~APdF~L~---d~~g~~v~Lsd~~Gk-~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS 81 (164)
T d1q98a_ 9 IEVGGHF-PQVGEIVENFILV---GNDLADVALNDFASK-RKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCIS 81 (164)
T ss_dssp ECEESCC-CCTTCBCCCCEEE---CTTSCEEEGGGGTTS-EEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEE
T ss_pred eecCCCC-CCCCCCCCCcEEE---CCCCCEEeehhhCCc-EEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeec
Confidence 4455666 8999999999998 888999999999998 899999999999999999999999999996 79999999
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCcc-cceEEc-CChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEeccCC-CCC
Q 024201 150 TDSVFSHLAWVQTDRKSGGLGDLK-YPLIAD-ITKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINNLA-IGR 223 (271)
Q Consensus 150 ~d~~~~~~~~~~~~~~~~~~~~~~-f~~l~D-~~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~~~-~~~ 223 (271)
.|+++.+++|.+.+ ++. +.++.| .+..+.+.||+.... .|+..|++||||++|+|++.++.+.. .+.
T Consensus 82 ~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~~~~~ep 154 (164)
T d1q98a_ 82 ADLPFAQARFCGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEP 154 (164)
T ss_dssp SSCHHHHTTCTTTT-------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCC
T ss_pred CCcHHHHHHHHHHh-------CCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECCCCCCCC
Confidence 99999999998876 454 344444 367899999997654 35667999999999999999876543 344
Q ss_pred CHHHHHHHH
Q 024201 224 SVDETLRTL 232 (271)
Q Consensus 224 ~~~e~l~~l 232 (271)
+.+++++.|
T Consensus 155 d~~~~l~~L 163 (164)
T d1q98a_ 155 NYEAALAVL 163 (164)
T ss_dssp CHHHHHHTT
T ss_pred CHHHHHHhh
Confidence 778877654
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=2.3e-27 Score=192.17 Aligned_cols=152 Identities=24% Similarity=0.422 Sum_probs=121.8
Q ss_pred eeecccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE
Q 024201 69 VVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (271)
Q Consensus 69 ~~~~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 148 (271)
.++..+.+ +++|+++|+|+|. +.+|+.++|++|+|| ++||+||++.|||.|..+++.|++. +.+.|++|++|
T Consensus 9 ~~~~~g~~-p~iG~~aP~F~L~---~~~g~~v~L~d~~Gk-~vvl~f~~~~~~p~C~~e~~~l~~~---~~~~g~~vv~I 80 (166)
T d1xvqa_ 9 AINTVGEL-PAVGSPAPAFTLT---GGDLGVISSDQFRGK-SVLLNIFPSVDTPVCATSVRTFDER---AAASGATVLCV 80 (166)
T ss_dssp BCCBSSCC-CCTTSBCCCCEEE---CTTSCEEEGGGGTTS-CEEEEECSCCCSSCCCHHHHHHHHH---HHHTTCEEEEE
T ss_pred eeecCCCC-CCCcCCCCCeEEE---CCCCCEEehHHhCCc-EEEEEeeecccccccHHHHHHHhhh---ccccccccccc
Confidence 34556666 8999999999998 788889999999999 8999999999999999999887654 55668999999
Q ss_pred eCCCHHHHHHHHHHhhhcCCCCCcccce-EEcCChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEecc-CCCCC
Q 024201 149 STDSVFSHLAWVQTDRKSGGLGDLKYPL-IADITKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINN-LAIGR 223 (271)
Q Consensus 149 S~d~~~~~~~~~~~~~~~~~~~~~~f~~-l~D~~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~-~~~~~ 223 (271)
|.|+.+.+++|.+.+ +..+.+ ..|....+.+.||+.... .|+..|++||||+||+|++.++.+ .....
T Consensus 81 s~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~ 153 (166)
T d1xvqa_ 81 SKDLPFAQKRFCGAE-------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEP 153 (166)
T ss_dssp ESSCHHHHTTCC-------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCC
T ss_pred ccchHHHHHHHHHHh-------CCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCC
Confidence 999999998888876 555655 456678999999998654 345678999999999999987653 44556
Q ss_pred CHHHHHHHHHHH
Q 024201 224 SVDETLRTLQAL 235 (271)
Q Consensus 224 ~~~e~l~~l~~l 235 (271)
+++++++.|++.
T Consensus 154 ~~d~il~aL~a~ 165 (166)
T d1xvqa_ 154 NYEAALAALGAT 165 (166)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHhc
Confidence 899999998764
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=3.5e-27 Score=184.74 Aligned_cols=122 Identities=25% Similarity=0.478 Sum_probs=112.1
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-CHHHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-SVFSHLA 158 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-~~~~~~~ 158 (271)
.|+++|+|++. +.+|+.+++++++|| ++||+|| ++|||+|..+++.++++++++.++++.+|+|+.+ +...+++
T Consensus 1 ~G~~~P~f~l~---~~~G~~~~l~~~~gk-~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~ 75 (137)
T d1st9a_ 1 EGSDAPNFVLE---DTNGKRIELSDLKGK-GVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN 75 (137)
T ss_dssp CCEECCCCEEE---CTTSCEEEGGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHH
T ss_pred CcCcCCCeEEE---CCCcCEEeHHHhCCC-EEEEEEe-eccccceeecccccccccccccccccccccccccchhhhHHH
Confidence 38999999998 677889999999998 8999999 8999999999999999999999999999999975 5678889
Q ss_pred HHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC
Q 024201 159 WVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL 219 (271)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~ 219 (271)
|.+++ +++|+++.|.+.++++.||+. .+|++||||++|+|++++.+..
T Consensus 76 ~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~ 123 (137)
T d1st9a_ 76 FMKSY-------GVNFPVVLDTDRQVLDAYDVS------PLPTTFLINPEGKVVKVVTGTM 123 (137)
T ss_dssp HHHHT-------TCCSCEEEETTSHHHHHTTCC------SSCEEEEECTTSEEEEEEESCC
T ss_pred HHHHc-------CCCccccccccchhhhhhhcc------ccceEEEECCCCEEEEEEECCC
Confidence 99887 789999999999999999998 8999999999999999986643
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=2.1e-26 Score=179.81 Aligned_cols=133 Identities=18% Similarity=0.223 Sum_probs=115.8
Q ss_pred CCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-CHHHHHHH
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-SVFSHLAW 159 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-~~~~~~~~ 159 (271)
||..++|++. +.+|+++++++++|| ++||+|| ++|||+|+.++|.|.+++++++ ++.+|+|+.+ +....++|
T Consensus 1 ~d~~~~f~~~---~~~G~~~~l~~~~Gk-~vll~F~-a~wC~~C~~~~p~l~~~~~~~~--~v~~v~v~~~~~~~~~~~~ 73 (134)
T d1lu4a_ 1 ADERLQFTAT---TLSGAPFDGASLQGK-PAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSF 73 (134)
T ss_dssp CGGGGCCEEE---BTTSCEEEGGGGTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHH
T ss_pred CCCCCcceeE---CCCCCEEcHHHhCCC-EEEEEEe-ecccCCceecchhHHHHhhhhc--cccccccccccchhhhhhh
Confidence 7889999998 677889999999998 9999999 9999999999999999998764 8999999875 56677889
Q ss_pred HHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++++ ++.||++.|.++++++.||+. .+|++||||++|+|++++.. ......+++.+.|.+|
T Consensus 74 ~~~~-------~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~v~~~--~g~~~~~~l~~~l~~L 134 (134)
T d1lu4a_ 74 VSKY-------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTSTFVNNP--TAAMSQDELSGRVAAL 134 (134)
T ss_dssp HHHH-------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEEEECCS--SSCCCHHHHHHHHHHC
T ss_pred hhhh-------ccccceeeCchHHHHHHcCCC------cCCEEEEEeCCCeEEEEecc--CCCCCHHHHHHHHHcC
Confidence 9888 789999999999999999999 89999999999999886422 2234678888888764
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.92 E-value=1.1e-24 Score=177.56 Aligned_cols=142 Identities=16% Similarity=0.254 Sum_probs=118.2
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--CHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--SVFSH 156 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--~~~~~ 156 (271)
..+.++|+|+++ +.+|+.++|++++|| ++||+|| ++||+.|..+++.+++++++++++++.||+|++| +.+..
T Consensus 31 ~~~~~~Pdf~l~---d~~G~~v~L~~~kGK-~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~ 105 (176)
T d1jfua_ 31 SAPLKLPDLAFE---DADGKPKKLSDFRGK-TLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKP 105 (176)
T ss_dssp CSCCBCCCCEEE---CTTSCEEEGGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHH
T ss_pred CCCCcCCCeEEE---CCCcCEEeHHHhCCC-EEEEEec-cCcccchHHHHHhhhhccccccccccccccccccccchhhh
Confidence 357789999998 778889999999998 9999999 9999999999999999999999999999999986 45677
Q ss_pred HHHHHHhhhcCCCCCccc-ceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKY-PLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f-~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++|.+++ ++.+ +++.|.+..+.+.|+....-. .+|++||||++|+|++++.+.... +.+++++.|++|
T Consensus 106 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~v~--~~P~~~lID~~G~I~~~~~G~~~~--~~~e~~~~l~al 174 (176)
T d1jfua_ 106 KTFLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRAL--GMPTSVLVDPQGCEIATIAGPAEW--ASEDALKLIRAA 174 (176)
T ss_dssp HHHHHHT-------TCCTTCCEECTTCHHHHHHHTTTCCS--SSSEEEEECTTSBEEEEEESCCCT--TSHHHHHHHHHH
T ss_pred hhhHhhh-------CCcceeeeecchhHHHHHHhhhccCC--CCCeEEEEcCCCEEEEEEECCCCC--ChHHHHHHHHHh
Confidence 8888887 5554 478888888888776543222 579999999999999998765433 348899998876
Q ss_pred H
Q 024201 236 Q 236 (271)
Q Consensus 236 ~ 236 (271)
.
T Consensus 175 ~ 175 (176)
T d1jfua_ 175 T 175 (176)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=5.8e-25 Score=173.32 Aligned_cols=137 Identities=9% Similarity=0.163 Sum_probs=113.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-----
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS----- 152 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~----- 152 (271)
+++|+++|+|++.+. ..+|+.++++++.|| ++||+|| ++|||+|..++|.|+++++++++ ++.+|+|+.+.
T Consensus 1 ~k~g~~aP~~~~~~~-~~ng~~~~~~~~~~k-~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~ 76 (143)
T d2b5xa1 1 MKLRQPMPELTGEKA-WLNGEVTREQLIGEK-PTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDL 76 (143)
T ss_dssp CCTTCBCCCCCCCSE-EESCCCCHHHHTTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTS
T ss_pred CCCCCcCCCCcCCcc-CcCCeEecHHHhCCC-EEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-cccceeEEeecccccc
Confidence 478999999997632 125678888888887 8999999 99999999999999999999986 69999998753
Q ss_pred -HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 153 -VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
....++|.+++ +++||++.|.+.++++.|++. .+|++||||++|+|++.+.+.. ..+++.+.
T Consensus 77 ~~~~~~~~~~~~-------~~~~p~~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~----~~~~l~~~ 139 (143)
T d2b5xa1 77 DPGKIKETAAEH-------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGGS----GMKMLEKR 139 (143)
T ss_dssp SHHHHHHHHHHT-------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESCS----TTHHHHHH
T ss_pred chhhhhhHHHhh-------ccCccccccCccchHHHcCCC------cCCEEEEECCCCEEEEEEECCC----CHHHHHHH
Confidence 34457788877 789999999999999999998 8999999999999999987642 33555555
Q ss_pred HHHH
Q 024201 232 LQAL 235 (271)
Q Consensus 232 l~~l 235 (271)
|++|
T Consensus 140 l~~l 143 (143)
T d2b5xa1 140 VNRV 143 (143)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 5543
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.1e-24 Score=175.38 Aligned_cols=147 Identities=20% Similarity=0.316 Sum_probs=119.7
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHH-HHHHHHHHHHHHHhcCcE-EEEEeCCCH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEFEKLNTE-ILGVSTDSV 153 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~-~l~~L~~~~~~~~~~gv~-vv~VS~d~~ 153 (271)
++++|+++|+|+|. .+.+|+.++|+++ +|| ++||+|||+.|||.|.. +++.+.+.+++++++|+. |+++|+|++
T Consensus 2 pikVGd~aP~f~l~--~~~~~~~v~l~d~~~gk-~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~ 78 (161)
T d1hd2a_ 2 PIKVGDAIPAVEVF--EGEPGNKVNLAELFKGK-KGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDA 78 (161)
T ss_dssp CCCTTCBCCCCEEE--CSSTTCEEEHHHHTTTS-EEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCH
T ss_pred CCCCCCcCCCeEEE--ecCCCcEEEhHHHhCCC-eEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCch
Confidence 48899999999996 2456789999997 566 89999999999999964 788999999999999975 567999999
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC------ccceEEEEEcCCCcEEEEEeccCCCCCC---
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG------IALRGLFIIDKEGVIQHSTINNLAIGRS--- 224 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g------~~~P~~~lID~~G~V~~~~~~~~~~~~~--- 224 (271)
..+.+|.+.+.. ...+++++|++++++++||+..+..+ ...+++++|++||+|++.++.+...+.+
T Consensus 79 ~~~~~~~~~~~~-----~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~~~~s~ 153 (161)
T d1hd2a_ 79 FVTGEWGRAHKA-----EGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSL 153 (161)
T ss_dssp HHHHHHHHHTTC-----TTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTS
T ss_pred hhhhhhhhhccc-----ccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeCCCCCCCcCc
Confidence 999999988721 45789999999999999999876643 2345566677799999998876666654
Q ss_pred HHHHHHH
Q 024201 225 VDETLRT 231 (271)
Q Consensus 225 ~~e~l~~ 231 (271)
++++|+.
T Consensus 154 a~~vL~~ 160 (161)
T d1hd2a_ 154 APNIISQ 160 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 4555554
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=1.2e-23 Score=163.65 Aligned_cols=128 Identities=20% Similarity=0.295 Sum_probs=107.0
Q ss_pred CCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC-CCHHHHHHHHHH
Q 024201 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST-DSVFSHLAWVQT 162 (271)
Q Consensus 84 ~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~-d~~~~~~~~~~~ 162 (271)
..||+++ +.+|+++++++++|| ++||+|| ++|||+|+.++|.|.+++++++ ++.+|+|+. |+....+.|.+.
T Consensus 5 ~~df~~~---~~~G~~~~l~~~~Gk-~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~~~~~~~~~ 77 (134)
T d1zzoa1 5 QLQFSAK---TLDGHDFHGESLLGK-PAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNK 77 (134)
T ss_dssp GGCCEEE---BTTSCEEEGGGGTTS-CEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHH
T ss_pred CcceeEE---cCCCCEEeHHHhCCC-EEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccchhHHHHHHh
Confidence 3579998 667889999999998 8999999 9999999999999999999886 577777766 566777888888
Q ss_pred hhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 163 DRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+ ....|+++.|.++++.+.||+. .+|++||||++|+|++.. +. .+.+++.+.|++|
T Consensus 78 ~------~~~~~~~l~D~~~~~~~~~~v~------~~P~~~iiD~~G~i~~~~-g~----~~~~~l~~~i~~L 133 (134)
T d1zzoa1 78 Y------PVKTFTQLADTDGSVWANFGVT------QQPAYAFVDPHGNVDVVR-GR----MSQDELTRRVTAL 133 (134)
T ss_dssp T------TCTTSEEEECTTCHHHHHTTCC------SSSEEEEECTTCCEEEEE-SC----CCHHHHHHHHHHH
T ss_pred c------CCcceeEEeeccchHHHhcCCC------ccCeEEEECCCCeEEEEE-CC----CCHHHHHHHHHhh
Confidence 7 1235899999999999999999 899999999999998753 22 3457777777765
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.89 E-value=5.4e-24 Score=167.31 Aligned_cols=127 Identities=12% Similarity=0.160 Sum_probs=103.7
Q ss_pred CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH---HHHHHHHHhhhcCCCC
Q 024201 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF---SHLAWVQTDRKSGGLG 170 (271)
Q Consensus 94 ~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~---~~~~~~~~~~~~~~~~ 170 (271)
+.+|++++|++++|| ++||+|| ++|||+|+.+++.|++++++++..++.+++|+.+... ....+.+.+.+. +
T Consensus 10 ~~~~~~~~l~~~~gk-~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~---~ 84 (143)
T d2fy6a1 10 TADNRPASVYLKKDK-PTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGL---N 84 (143)
T ss_dssp ETTSCBGGGGCCTTS-CEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTS---C
T ss_pred CCCCCEeeHHHhCCC-EEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhc---C
Confidence 677889999999998 8999999 9999999999999999999999999999999875321 122222322221 2
Q ss_pred CcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 171 DLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 171 ~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
...|+++.|.++++++.||+. .+|++||||++|+|+++..+.. +.+++.+.|+++
T Consensus 85 ~~~~~~~~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~----~~~~~~~~l~~~ 139 (143)
T d2fy6a1 85 YPKLPVVTDNGGTIAQSLNIS------VYPSWALIGKDGDVQRIVKGSI----NEAQALALIRDP 139 (143)
T ss_dssp CTTSCEEECTTCHHHHHTTCC------SSSEEEEECTTSCEEEEEESCC----CHHHHHHHHHCT
T ss_pred CcccccccccchHHHHHcCCC------ccCEEEEECCCCEEEEEEECCC----CHHHHHHHHHHH
Confidence 567999999999999999998 8999999999999999986653 456777776654
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=3.2e-22 Score=162.29 Aligned_cols=146 Identities=14% Similarity=0.252 Sum_probs=112.7
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHhc--CcEEEEEeCCC----
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEKL--NTEILGVSTDS---- 152 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~---- 152 (271)
++.++|+|+|. +.+|+.+++++|+|| ++||+|| ++||| .|+.+++.|.++++++++. +|.+|+||+|+
T Consensus 7 ~~~~~p~F~l~---d~~G~~vsl~d~~Gk-~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dt 81 (172)
T d1xzoa1 7 LNYEVEPFTFQ---NQDGKNVSLESLKGE-VWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDK 81 (172)
T ss_dssp CCEECCCCEEE---CTTSCEEETGGGTTC-CEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred CCCcCCCeEEE---cCCCCEEcHHHhCCC-EEEEEEe-cccccccccccchhhhhhhhhhccccccccccccccccccch
Confidence 67789999998 889999999999998 8999999 89997 7999999999999999764 48899999875
Q ss_pred HHHHHHHHHHhhhcCCCCCcccceEEcCChHH-----HHHhCCccCC-CC----ccceEEEEEcCCCcEEEEEeccCCCC
Q 024201 153 VFSHLAWVQTDRKSGGLGDLKYPLIADITKSI-----SKSYGVLIPD-QG----IALRGLFIIDKEGVIQHSTINNLAIG 222 (271)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~-----~~~ygv~~~~-~g----~~~P~~~lID~~G~V~~~~~~~~~~~ 222 (271)
++.+++|.+.+ ++...+|.++.+.+.+. .+.|++.... .| .|.+.+||||++|+|+..+.+ ...
T Consensus 82 p~~l~~y~~~~----~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g--~~~ 155 (172)
T d1xzoa1 82 PKQLKKFAANY----PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNG--VEN 155 (172)
T ss_dssp HHHHHHHHTTS----CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEES--SSS
T ss_pred HHHHHHHHHHh----ccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcC--CCC
Confidence 45556665554 55455678888876543 3556654322 11 367899999999999987643 223
Q ss_pred CCHHHHHHHHHHHH
Q 024201 223 RSVDETLRTLQALQ 236 (271)
Q Consensus 223 ~~~~e~l~~l~~l~ 236 (271)
...+++++.|+++.
T Consensus 156 ~~~~~l~~dik~~~ 169 (172)
T d1xzoa1 156 TPYDDIISDVKSAS 169 (172)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 46899999988774
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=99.88 E-value=1.4e-22 Score=163.07 Aligned_cols=148 Identities=23% Similarity=0.343 Sum_probs=120.9
Q ss_pred CCCCCCCCCCeEEeeec-CCCceeEecccc-cCCcEEEEEEecCCCCCChHH-HHHHHHHHHHHHHhcCc-EEEEEeCCC
Q 024201 77 PPLVGNTAPDFAAEAVF-DQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEFEKLNT-EILGVSTDS 152 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~-~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~-~l~~L~~~~~~~~~~gv-~vv~VS~d~ 152 (271)
++++|+++|||+|..+. +.++++++|+++ +|| ++||+|||+.|+|.|.. +++...+..++++++|. ++++||+|+
T Consensus 3 ~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk-~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~ 81 (162)
T d1tp9a1 3 PIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGK-KVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND 81 (162)
T ss_dssp CCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTS-EEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCC-eEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccc
Confidence 48899999999998664 566789999985 777 89999999999999974 67778888888888875 788999999
Q ss_pred HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC-----ccceEEEEEcCCCcEEEEEeccCCC-C-CCH
Q 024201 153 VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG-----IALRGLFIIDKEGVIQHSTINNLAI-G-RSV 225 (271)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g-----~~~P~~~lID~~G~V~~~~~~~~~~-~-~~~ 225 (271)
++.+.+|...... ...+++++|++.+++++||+.....+ ...|.+|||| ||+|++.++.+... . .++
T Consensus 82 ~~~~~~~~~~~~~-----~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ve~~~~~~~s~a 155 (162)
T d1tp9a1 82 PFVMKAWAKSYPE-----NKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEGGGEFTVSSA 155 (162)
T ss_dssp HHHHHHHHHTCTT-----CSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECSSSCCSSCSH
T ss_pred hhhhhhhhhhccc-----ccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEEECCCCCccCCH
Confidence 9999999998721 34689999999999999998865432 2458999999 89999998764332 2 357
Q ss_pred HHHHHH
Q 024201 226 DETLRT 231 (271)
Q Consensus 226 ~e~l~~ 231 (271)
+++|+.
T Consensus 156 e~vLk~ 161 (162)
T d1tp9a1 156 EDILKD 161 (162)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 888764
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.2e-22 Score=156.87 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=91.7
Q ss_pred EeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-HHHHHHHHHHhhhc
Q 024201 89 AEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFSHLAWVQTDRKS 166 (271)
Q Consensus 89 l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~~~~~~~~~~~~~~ 166 (271)
|+++ |.+|+.++++++ +|| ++||+|| ++||++|+.++|.|.+++ ++++.+++|+.+. ......+..+.
T Consensus 2 l~~l-d~~g~~~~~~~l~~Gk-~vvl~Fw-atWC~pC~~e~p~l~~~~----~~~~~vi~i~~~~~~~~~~~~~~~~--- 71 (136)
T d1z5ye1 2 LESL-DNPGQFYQADVLTQGK-PVLLNVW-ATWCPTSRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAISWLKEL--- 71 (136)
T ss_dssp EEBS-SSTTCEECHHHHHSSS-CEEEEEE-CTTCHHHHHHHHHHHHHH----HTTCCEEEEEESCCHHHHHHHHHHH---
T ss_pred Cccc-cCCCcEecHHHHcCCC-EEEEEEE-cCcCCCcCccccchhhhh----hhhhhhcccccccchhhhHHHHHHc---
Confidence 3444 667999999998 788 9999999 999999999999998764 4589999998865 34445666655
Q ss_pred CCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC
Q 024201 167 GGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL 219 (271)
Q Consensus 167 ~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~ 219 (271)
....++++.|.++.+++.||+. .+|++||||++|+|++++.+..
T Consensus 72 ---~~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~ 115 (136)
T d1z5ye1 72 ---GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDL 115 (136)
T ss_dssp ---CCCCSEEEEESSCHHHHHHTCC------SBSEEEEECTTSCEEEEEESCC
T ss_pred ---CCccceeecccchhHHHhcccC------CcceEEEEcCCCEEEEEEEcCC
Confidence 1344557889999999999999 8999999999999999987653
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.86 E-value=2.3e-22 Score=158.35 Aligned_cols=130 Identities=14% Similarity=0.242 Sum_probs=101.1
Q ss_pred CCCCeEEeee-----cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-HHHH
Q 024201 83 TAPDFAAEAV-----FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFSH 156 (271)
Q Consensus 83 ~~Pdf~l~~~-----~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~~~~ 156 (271)
++|+|+++.+ ++.++..+++++++|| ++||+|| ++||++|+.++|.+.++++++ ++++++|+.+. ..+.
T Consensus 2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK-~vll~fw-a~wC~~C~~~~p~l~~l~~~~---~~~~~~i~~~~~~~~~ 76 (144)
T d1knga_ 2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGK-VSLVNVW-ASWCVPCHDEAPLLTELGKDK---RFQLVGINYKDAADNA 76 (144)
T ss_dssp BCCCCCBCCCTTCEETTEECCCBCGGGGTTS-CEEEEEE-CTTCHHHHHHHHHHHHHTTCT---TSEEEEEEESCCHHHH
T ss_pred CCCCCCCCCCCCccccCCcCCccCHHHhCCC-EEEEEee-ccccccccccCchhhhhhhcc---CceeEEEEeeechHHH
Confidence 4566665533 3445578999999999 9999999 999999999999998886554 68999988754 4556
Q ss_pred HHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++|.+++ +..++ ++.|.++++++.||+. .+|++||||++|+|++++.+.. ..+++.+.|+.
T Consensus 77 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~----~~~~l~~~i~~ 138 (144)
T d1knga_ 77 RRFLGRY-------GNPFGRVGVDANGRASIEWGVY------GVPETFVVGREGTIVYKLVGPI----TPDNLRSVLLP 138 (144)
T ss_dssp HHHHHHH-------CCCCSEEEEETTSHHHHHTTCC------SSCEEEEECTTSBEEEEEESCC----CHHHHHHTHHH
T ss_pred HHHHHHc-------CCccccccccccchhhhhcCcc------ccceEEEEcCCCeEEEEEeCCC----CHHHHHHHHHH
Confidence 7777777 44554 7889999999999998 8999999999999999976643 34444444443
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.86 E-value=1.7e-22 Score=159.20 Aligned_cols=119 Identities=19% Similarity=0.263 Sum_probs=93.0
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCcEEEEEeCCCHH-HHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDSVF-SHL 157 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~-~~gv~vv~VS~d~~~-~~~ 157 (271)
+|+.+|+|+.. ..+|..++|++|+|| ++||+|| ++||++|+.++|.|+++++++. ++++++|+|+.|... ...
T Consensus 4 ~~k~~P~~~~~---~~~~~~v~l~~~~GK-~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~ 78 (144)
T d1o73a_ 4 LAKYLPGATNL---LSKSGEVSLGSLVGK-TVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFH 78 (144)
T ss_dssp GGGTSCTTCCB---BCTTSCBCSGGGTTC-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred cccCCCCceee---ccCCCEEeHHHhCCC-EEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHH
Confidence 58899999986 556668999999999 9999999 9999999999999999999995 568999999998633 334
Q ss_pred HHHHHhhhcCCCCCcccceEE-cCChHHHHHhCCccCCCCccceEEEEEcCC-CcEEEEE
Q 024201 158 AWVQTDRKSGGLGDLKYPLIA-DITKSISKSYGVLIPDQGIALRGLFIIDKE-GVIQHST 215 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~-D~~~~~~~~ygv~~~~~g~~~P~~~lID~~-G~V~~~~ 215 (271)
++.++. ....+++.. +...++.+.||+. .+|++||||+| |+|+..+
T Consensus 79 ~~~~~~------~~~~~~~~~~~~~~~l~~~y~v~------~~Pt~~lID~~~G~Ii~~~ 126 (144)
T d1o73a_ 79 DYYGKM------PWLALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHTTC------SSEECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHhc------cccceeeeccchHHHHHHHcCCC------cCCEEEEEECCCCEEEeec
Confidence 444432 112222211 1124689999999 89999999998 8998763
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=1e-20 Score=152.18 Aligned_cols=146 Identities=23% Similarity=0.381 Sum_probs=118.0
Q ss_pred CCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHH-HHHHhcCc-EEEEEeCCCHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRY-TEFEKLNT-EILGVSTDSVFSH 156 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~-~~~~~~gv-~vv~VS~d~~~~~ 156 (271)
.|+++|||+++...+.+.+.++|+|+ +|| +|||+|+|++|+|.|..++..+.+.+ +.++.+++ .++.++++++..+
T Consensus 3 ~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk-~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~ 81 (163)
T d1nm3a2 3 EGKKVPQVTFRTRQGDKWVDVTTSELFDNK-TVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVM 81 (163)
T ss_dssp TTSBCCCCEEEEEETTEEEEEEHHHHHTTS-EEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHH
T ss_pred CCCCCCCeEEEEEcCCCceEEEHHHHhCCC-eEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHH
Confidence 69999999999887777789999997 676 89999999999999999877665554 44555554 5777888898999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC--C---ccceEEEEEcCCCcEEEEEeccCCCCC-----CHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ--G---IALRGLFIIDKEGVIQHSTINNLAIGR-----SVD 226 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~--g---~~~P~~~lID~~G~V~~~~~~~~~~~~-----~~~ 226 (271)
.+|.+.. ....+++++|.+..++++||+..... | ...|.+|||| ||+|++.++.+...++ +++
T Consensus 82 ~a~~~~~------~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~~~~~g~~~~~s~ae 154 (163)
T d1nm3a2 82 NAWKEDE------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIEPNEPGDPFKVSDAD 154 (163)
T ss_dssp HHHHHHT------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECCSCSSCCCSSSSHH
T ss_pred HHHhhhh------ccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEecCCCCCCccccCHH
Confidence 8888776 25679999999999999999975432 2 3678999999 9999999887654443 578
Q ss_pred HHHHHHH
Q 024201 227 ETLRTLQ 233 (271)
Q Consensus 227 e~l~~l~ 233 (271)
++|+.|.
T Consensus 155 ~vL~~L~ 161 (163)
T d1nm3a2 155 TMLKYLA 161 (163)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 8888764
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.85 E-value=1.1e-21 Score=154.06 Aligned_cols=118 Identities=16% Similarity=0.230 Sum_probs=94.5
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCCHH-HHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSVF-SHL 157 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~~~-~~~ 157 (271)
.|+.+|+|++. +.+|++++|++++|| ++||+|| ++||+.|..+++.|.++++++.. .++.+|+|+.|... ...
T Consensus 2 ~~k~~P~~~~~---~~~g~~v~l~~l~GK-~vll~Fw-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~ 76 (144)
T d1o8xa_ 2 LDKYLPGIEKL---RRGDGEVEVKSLAGK-LVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFA 76 (144)
T ss_dssp GGGTSTTCCEE---EETTEEEEGGGGTTC-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHH
T ss_pred CCCCCCCcEeE---cCCCCEEeHHHhCCC-EEEEEec-cccccccccccchhHHhhhhcccccccccccccccccHHHHH
Confidence 47899999998 677889999999999 8999999 99999999999999999999965 47999999998633 223
Q ss_pred HHHHHhhhcCCCCCcccceE-EcCChHHHHHhCCccCCCCccceEEEEEcCC-CcEEEE
Q 024201 158 AWVQTDRKSGGLGDLKYPLI-ADITKSISKSYGVLIPDQGIALRGLFIIDKE-GVIQHS 214 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l-~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~-G~V~~~ 214 (271)
.+.... ....+++. .|...++.+.|++. .+|++||||+| |+|+..
T Consensus 77 ~~~~~~------~~~~~~~~~~d~~~~l~~~y~v~------~~Pt~~liD~~~G~Vi~~ 123 (144)
T d1o8xa_ 77 GYFAKM------PWLAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTT 123 (144)
T ss_dssp HHHTTC------SSEECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEES
T ss_pred HHHhhc------cccceeeecccchhhHHHHcCCC------cCCEEEEEeCCCCEEEEE
Confidence 333221 13333332 34457899999999 89999999998 899765
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.84 E-value=3e-21 Score=152.23 Aligned_cols=112 Identities=14% Similarity=0.200 Sum_probs=86.8
Q ss_pred eEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCCH-HHHHHHHHHhh
Q 024201 87 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSV-FSHLAWVQTDR 164 (271)
Q Consensus 87 f~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~~-~~~~~~~~~~~ 164 (271)
|+...+ +.+|+.|+|++++|| ++||+|| ++||++|+.++|.|.++|+++++ .+++||+|+.|.. ++..++.+++
T Consensus 9 ~~~~~l-~~~~~~v~ls~l~GK-~vll~Fw-AtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~- 84 (144)
T d1i5ga_ 9 YSTNVL-KGAAADIALPSLAGK-TVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKM- 84 (144)
T ss_dssp SCSEEE-ETTEEEEEGGGGTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTC-
T ss_pred Cchhhc-cCCCCEeeHHHcCCC-EEEEEEE-ecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhC-
Confidence 444333 556889999999999 9999999 99999999999999999999986 4799999999863 2334444433
Q ss_pred hcCCCCCcccceEEcCC--hHHHHHhCCccCCCCccceEEEEEcCC-CcEEEE
Q 024201 165 KSGGLGDLKYPLIADIT--KSISKSYGVLIPDQGIALRGLFIIDKE-GVIQHS 214 (271)
Q Consensus 165 ~~~~~~~~~f~~l~D~~--~~~~~~ygv~~~~~g~~~P~~~lID~~-G~V~~~ 214 (271)
+..+..+.|.+ ..+.+.||+. .+|++||||+| |+|+..
T Consensus 85 ------~~~~~~~~d~~~~~~l~~~y~v~------~iPt~~lid~~~G~vi~~ 125 (144)
T d1i5ga_ 85 ------PWLALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIITT 125 (144)
T ss_dssp ------SSEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEES
T ss_pred ------CCCceeeEChHHHHHHHHHCCCC------CcCEEEEEeCCCCEEEee
Confidence 33333333333 4588999999 89999999997 899864
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.79 E-value=1.3e-18 Score=140.61 Aligned_cols=147 Identities=17% Similarity=0.301 Sum_probs=116.1
Q ss_pred CCCCCCCCeEEeeec------------CCCceeEecccc-cCCcEEEEEEecCCCCCChHH-HHHHHHHHHHHH-HhcCc
Q 024201 79 LVGNTAPDFAAEAVF------------DQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEF-EKLNT 143 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~------------~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~-~l~~L~~~~~~~-~~~gv 143 (271)
++|+.+|+.++.... ..+.+.++++++ +|| .+||+++|+++.|.|.. ++|.+.+.+++| +++|+
T Consensus 1 k~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~K-kVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gv 79 (179)
T d1xiya1 1 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNK-KILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF 79 (179)
T ss_dssp CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTC-EEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC
T ss_pred CCCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCC-eEEEEEcccccCCccchhhCcchhhhHHHHHHhcCC
Confidence 478999998774211 122357888887 555 89999999999999975 799999999999 57888
Q ss_pred -EEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC--Cc---cceEEEEEcCCCcEEEEEec
Q 024201 144 -EILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ--GI---ALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 144 -~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~--g~---~~P~~~lID~~G~V~~~~~~ 217 (271)
+|++||+|+++.+++|.+.+ +. -.+.+++|.+++++++||+..+.. |+ ..|..+||| ||+|.+.++.
T Consensus 80 d~I~~iSvnD~fv~~aW~~~~----~~--~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~vE 152 (179)
T d1xiya1 80 DDIYCITNNDIYVLKSWFKSM----DI--KKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQE 152 (179)
T ss_dssp SEEEEEESSCHHHHHHHHHHT----TC--CSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred ceEEEEecCCHHHHHHHHhhc----Cc--ceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEEe
Confidence 68889999999999999987 22 245899999999999999986542 32 458899998 9999999886
Q ss_pred cCCC---------CCCHHHHHHHHH
Q 024201 218 NLAI---------GRSVDETLRTLQ 233 (271)
Q Consensus 218 ~~~~---------~~~~~e~l~~l~ 233 (271)
+... ...++.+|+.|+
T Consensus 153 ~~~~~~~~~dp~~vSsae~iL~~L~ 177 (179)
T d1xiya1 153 KDKQHNIQTDPYDISTVNNVKEFLK 177 (179)
T ss_dssp SSCCTTCSSCCCSTTSHHHHHHHHH
T ss_pred CCCCCCCCCCCcccCCHHHHHHHHh
Confidence 5432 246788888876
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.8e-17 Score=135.24 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=98.6
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------HH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--------VF 154 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--------~~ 154 (271)
.+.||++.+++ +|+.++|++|+|| ++||++| |+||+.|..+++.|+++|++|+++|++||++++|+ .+
T Consensus 2 siydf~~~~l~--~g~~vsL~~ykGK-vvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ 77 (184)
T d2f8aa1 2 SVYAFSARPLA--GGEPVSLGSLRGK-VLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNE 77 (184)
T ss_dssp CGGGCEECBTT--CSSCEEGGGGTTS-EEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHH
T ss_pred ceeeeEEEECC--CCCEecHHHcCCC-EEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchh
Confidence 46799998432 3568999999999 8999999 99999999999999999999999999999999874 34
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCC------hHHHH----HhCCccCCC-------------------CccceEEEEE
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADIT------KSISK----SYGVLIPDQ-------------------GIALRGLFII 205 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~------~~~~~----~ygv~~~~~-------------------g~~~P~~~lI 205 (271)
++.+|.+..... ...+.+|++....+ ..+.+ ..+....+. -.+..+.|||
T Consensus 78 ei~~f~~~~~~~-~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLI 156 (184)
T d2f8aa1 78 EILNSLKYVRPG-GGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV 156 (184)
T ss_dssp HHHHHHHHTSSC-TTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEE
T ss_pred hhhhhhheeccc-cccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEE
Confidence 666776643111 11256777765432 23332 222111000 0144588999
Q ss_pred cCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 206 DKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 206 D~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|++|+|+.++..... .+++.+.|++|
T Consensus 157 dr~G~vv~rf~~~~~----p~~i~~~Ie~l 182 (184)
T d2f8aa1 157 GPDGVPLRRYSRRFQ----TIDIEPDIEAL 182 (184)
T ss_dssp CTTSCEEEEECTTSC----GGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCC----HHHHHHHHHHH
Confidence 999999998744322 23455555554
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=5.4e-17 Score=128.09 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=99.4
Q ss_pred CeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHhcC----cEEEEEeCCCHHHHHHHH
Q 024201 86 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEKLN----TEILGVSTDSVFSHLAWV 160 (271)
Q Consensus 86 df~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~~g----v~vv~VS~d~~~~~~~~~ 160 (271)
||+|. |++|++|+|++|+|| ++||+|| ++||| .|...++.+.++++++...+ +.++.++.++..+.....
T Consensus 2 dF~L~---d~~G~~vsl~d~~GK-~vll~F~-~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (160)
T d1wp0a1 2 PFSLT---THTGERKTDKDYLGQ-WLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAI 76 (160)
T ss_dssp CCEEE---ETTSCEEEGGGGTTS-EEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHH
T ss_pred CeEEE---cCCCCEEcHHHhCCC-EEEEEEE-CCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHH
Confidence 68998 889999999999999 9999999 89997 69999999999999987654 456667765433332222
Q ss_pred HHhhhcCCCCCcccceEEcCC---hHHHHHhCCccCCC---------CccceEEEEEcCCCcEEEEEeccCCCCCCHHHH
Q 024201 161 QTDRKSGGLGDLKYPLIADIT---KSISKSYGVLIPDQ---------GIALRGLFIIDKEGVIQHSTINNLAIGRSVDET 228 (271)
Q Consensus 161 ~~~~~~~~~~~~~f~~l~D~~---~~~~~~ygv~~~~~---------g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~ 228 (271)
..+.... +.+|..+.+.. ..+.+.|++..... ..+.+++||||++|+|+..+- ...+.+++
T Consensus 77 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~----~~~~~~~i 149 (160)
T d1wp0a1 77 ANYVKEF---SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFG----QNKRKGEI 149 (160)
T ss_dssp HHHHHTT---CTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEE----TTCCHHHH
T ss_pred HHHHhhc---CCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEEC----CCCCHHHH
Confidence 2222222 56777776554 45678888653221 125689999999999999852 23457788
Q ss_pred HHHHHHH
Q 024201 229 LRTLQAL 235 (271)
Q Consensus 229 l~~l~~l 235 (271)
.+.|+++
T Consensus 150 ~~~I~~~ 156 (160)
T d1wp0a1 150 AASIATH 156 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=8.3e-17 Score=127.24 Aligned_cols=143 Identities=16% Similarity=0.195 Sum_probs=95.0
Q ss_pred CCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHh---cCcEEEEEeCCCHHHHHHHH
Q 024201 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEK---LNTEILGVSTDSVFSHLAWV 160 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~---~gv~vv~VS~d~~~~~~~~~ 160 (271)
+||+|. |.+|+++++++|+|| ++||+|| .+||+ .|......+..++..+.. ..+.++.++.+...+..+..
T Consensus 7 ~dF~l~---d~~G~~vsl~~~~GK-~vli~f~-~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T d2b7ka1 7 GPFHLE---DMYGNEFTEKNLLGK-FSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVL 81 (169)
T ss_dssp CCCEEE---ETTSCEEEGGGGTTS-CEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHH
T ss_pred CCeEEE---eCCCCEECHHHHCCC-EEEEEEe-ccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhh
Confidence 589998 889999999999999 8999999 67776 566666666666665543 34667777776654444444
Q ss_pred HHhhhcCCCCCcccceEEcCC---hHHHHHhCCccCCC-------C---ccceEEEEEcCCCcEEEEEeccCCCCCCHHH
Q 024201 161 QTDRKSGGLGDLKYPLIADIT---KSISKSYGVLIPDQ-------G---IALRGLFIIDKEGVIQHSTINNLAIGRSVDE 227 (271)
Q Consensus 161 ~~~~~~~~~~~~~f~~l~D~~---~~~~~~ygv~~~~~-------g---~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e 227 (271)
....... ...+....... ....+.|++..... + .++|++||||++|+|+..+.........+++
T Consensus 82 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~ 158 (169)
T d2b7ka1 82 KEYLSDF---HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDK 158 (169)
T ss_dssp HHHHTTS---CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHH
T ss_pred hhhhccc---cccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHH
Confidence 4443322 33444444332 34455666553221 1 2679999999999999987655555556778
Q ss_pred HHHHHHHH
Q 024201 228 TLRTLQAL 235 (271)
Q Consensus 228 ~l~~l~~l 235 (271)
+++.|++|
T Consensus 159 I~e~ik~l 166 (169)
T d2b7ka1 159 IVEHVKSY 166 (169)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 88888876
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.23 E-value=3.5e-11 Score=89.58 Aligned_cols=89 Identities=19% Similarity=0.313 Sum_probs=72.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.|++++||+|| +.||++|....|.|.++.+++. ++.++.|..|. .+.+++
T Consensus 23 ~~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~---------------------------~~~~l~ 72 (112)
T d1f9ma_ 23 AGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTLA 72 (112)
T ss_dssp CTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHHH
T ss_pred cCCCEEEEEEE-cCCCcchHHHHHHHhhhccccc--cceeecccccc---------------------------cchhhH
Confidence 35558999999 9999999999999999999886 67777776542 235788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.||+. .+|+++++ ++|+++....| .+.+++++.|++.+
T Consensus 73 ~~~~V~------~~Pt~~~~-k~G~~v~~~~G-----~~~~~l~e~i~~~~ 111 (112)
T d1f9ma_ 73 KELGIR------VVPTFKIL-KENSVVGEVTG-----AKYDKLLEAIQAAR 111 (112)
T ss_dssp HHHCCS------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHHH
T ss_pred hheeec------cCCEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHHcc
Confidence 999999 89999999 79999999764 35678888887654
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.22 E-value=3.5e-11 Score=89.24 Aligned_cols=90 Identities=20% Similarity=0.341 Sum_probs=68.9
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
.|.+..|| ++||.|| ++||++|+...|.+.++++++++ .+.++.|..|.
T Consensus 19 ~l~~~~~k-~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d~---------------------------- 67 (111)
T d1xwaa_ 19 QLTKASGK-LVVLDFF-ATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDE---------------------------- 67 (111)
T ss_dssp HHHHHTTS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------
T ss_pred HHHhcCCC-EEEEEEE-CCcccCccccchhHHHHhhhccc-ceEEEEEEeec----------------------------
Confidence 45666777 8999999 99999999999999999999874 35666665542
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
..++++.|++. .+|+++++ ++|+++..+.+ ...+++.+.|+
T Consensus 68 ~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~I~ 108 (111)
T d1xwaa_ 68 CEDIAMEYNIS------SMPTFVFL-KNGVKVEEFAG-----ANAKRLEDVIK 108 (111)
T ss_dssp CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHH
T ss_pred CcchhhcCCCc------cccEEEEE-ECCEEEEEEeC-----CCHHHHHHHHH
Confidence 35678899999 89988888 79999988754 23455554443
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.19 E-value=1.8e-10 Score=84.73 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=71.4
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
++++++||.|| ++||++|+...|.+.++.+++.+ .+.++.|.+| .+.+++
T Consensus 18 ~~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d----------------------------~~~~l~ 67 (108)
T d1thxa_ 18 KAEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEID----------------------------PNPTTV 67 (108)
T ss_dssp TCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEEST----------------------------TCHHHH
T ss_pred hCCCcEEEEEE-CCCCCCccccchHHHHHHHhcCC-cceeceeccc----------------------------ccHHHH
Confidence 34458999999 99999999999999999988875 4777777654 345789
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. .+|++++++ +|+++....+. ...+++.+.|+..
T Consensus 68 ~~~~I~------~~Pt~~~~~-~g~~v~~~~G~----~~~~~l~~~i~~~ 106 (108)
T d1thxa_ 68 KKYKVE------GVPALRLVK-GEQILDSTEGV----ISKDKLLSFLDTH 106 (108)
T ss_dssp HHTTCC------SSSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred HHhccc------CCCEEEEEE-CCEEEEEEeCC----CCHHHHHHHHHHh
Confidence 999999 899999995 89999887553 4577888777753
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.17 E-value=1.8e-10 Score=84.63 Aligned_cols=87 Identities=14% Similarity=0.274 Sum_probs=69.8
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++||++|....|.+.++.+++.. .+.++-|.+| ...++++.
T Consensus 19 ~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d----------------------------~~~~l~~~ 68 (107)
T d1dbya_ 19 SVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTD----------------------------ESPNVASE 68 (107)
T ss_dssp SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETT----------------------------TCHHHHHH
T ss_pred CCcEEEEEE-CCCCCCccccChHHHHHHHhhcc-cceEEEEecc----------------------------cchhHHHH
Confidence 348999999 99999999999999999888765 4677767654 23578999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
|++. ..|+++++ ++|+.+.+..+. .+.+++.+.|+..
T Consensus 69 ~~V~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~~ 105 (107)
T d1dbya_ 69 YGIR------SIPTIMVF-KGGKKCETIIGA----VPKATIVQTVEKY 105 (107)
T ss_dssp HTCC------SSCEEEEE-SSSSEEEEEESC----CCHHHHHHHHHHH
T ss_pred hccc------ceEEEEEE-ECCeEEEEEeCC----CCHHHHHHHHHHh
Confidence 9999 89999999 589999987653 3567777777653
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.16 E-value=9.1e-11 Score=85.94 Aligned_cols=88 Identities=14% Similarity=0.253 Sum_probs=69.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.+++++||.|| ++||++|....|.+.++.+++++ .+.++.|.+| .+..++
T Consensus 15 ~~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~----------------------------~~~~~~ 64 (105)
T d1nw2a_ 15 QGDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVD----------------------------ENPETT 64 (105)
T ss_dssp TSSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETT----------------------------TCHHHH
T ss_pred hCCCcEEEEEE-CCCCCCcccccchhhhhhhhcCC-ceEEEEEECC----------------------------CCcccH
Confidence 34458999999 99999999999999999999875 4788777664 346778
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+.|+|. ..|+++++ ++|+.+.+..+. .+.+++.+.|+.
T Consensus 65 ~~~~V~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~ 102 (105)
T d1nw2a_ 65 SQFGIM------SIPTLILF-KGGEPVKQLIGY----QPKEQLEAQLAD 102 (105)
T ss_dssp HHTTCC------BSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTTT
T ss_pred HHCCcc------eeeEEEEE-ECCEEEEEEECC----CCHHHHHHHHHH
Confidence 899999 89999998 689999887653 345666665553
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.15 E-value=1.8e-10 Score=84.10 Aligned_cols=88 Identities=14% Similarity=0.238 Sum_probs=69.0
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
..++++||.|| ++||++|....|.+.++.+++.. .+.++.|..| .+.+++
T Consensus 15 ~~~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~v~~d----------------------------~~~~l~ 64 (104)
T d1fb6a_ 15 ESEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTD----------------------------EAPGIA 64 (104)
T ss_dssp TCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETT----------------------------TCHHHH
T ss_pred cCCCcEEEEEE-cCccCCccccCchhHHHHHhhcC-ccceeEEecc----------------------------cchhhh
Confidence 33458999999 99999999999999999998865 3455555544 345789
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+.|++. ..|+++++ ++|+.+.+..|. .+.+++.+.|+.
T Consensus 65 ~~~~V~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~ 102 (104)
T d1fb6a_ 65 TQYNIR------SIPTVLFF-KNGERKESIIGA----VPKSTLTDSIEK 102 (104)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEEEC----CCHHHHHHHHHH
T ss_pred hhccee------eeeEEEEE-EcCeEEEEEeCC----CCHHHHHHHHHH
Confidence 999999 89998887 699999987653 456777777764
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=2.2e-10 Score=84.18 Aligned_cols=88 Identities=14% Similarity=0.275 Sum_probs=68.6
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+++++||.|| ++||++|+...|.+.++..++.. .+.++.|.+| .+..+++
T Consensus 19 ~~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d----------------------------~~~~l~~ 68 (108)
T d2trxa_ 19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNID----------------------------QNPGTAP 68 (108)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETT----------------------------TCTTHHH
T ss_pred CCCcEEEEEE-CCCCCCccccCcHHHHHHHHhhc-ceeeeecccc----------------------------chhhHHH
Confidence 3458999999 99999999999999998887654 4566555543 2456899
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.||+. ..|+++++ ++|+++.+..+. ...+++.+.|++.
T Consensus 69 ~~~v~------~~PT~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~~ 106 (108)
T d2trxa_ 69 KYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN 106 (108)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred HhCCC------cEEEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHHh
Confidence 99999 89988777 699999987653 4577788877754
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4.1e-11 Score=89.43 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=68.0
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccc
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYP 175 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~ 175 (271)
...+.+.+|| ++||+|| ++||++|+...|.+ .+..+.+. ++.++.+..+...
T Consensus 14 ~~~l~~~~gK-~vlv~F~-a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~--------------------- 68 (117)
T d2fwha1 14 NQALVEAKGK-PVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND--------------------- 68 (117)
T ss_dssp HHHHHHHTTS-CEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC---------------------
T ss_pred HHHHHHcCCC-eEEEEEe-cccCCcccccchhHHhHHHHHHhcc--ceEEEecccccch---------------------
Confidence 3456677887 8999999 99999999988877 34444333 4555555443210
Q ss_pred eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 176 LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 176 ~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.+.++++.|++. .+|+++++|++|+++... ...-..+.+++++.|+
T Consensus 69 ---~~~~~l~~~~~v~------~~Pt~~~~~~~G~~~~~~--~~~G~~~~~~~~~~l~ 115 (117)
T d2fwha1 69 ---AQDVALLKHLNVL------GLPTILFFDGQGQEHPQA--RVTGFMDAETFSAHLR 115 (117)
T ss_dssp ---HHHHHHHHHTTCC------SSSEEEEECTTSCBCGGG--CBCSCCCHHHHHHHHH
T ss_pred ---hHHHHHHhhhehh------hceEEEEEeCCCcEEecc--cccccCCHHHHHHHHh
Confidence 1235678899999 899999999999977531 1111246788887775
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.8e-10 Score=83.39 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=67.3
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|++++||.|| ++||++|+...|.|.++.+++. ++.++-|..| ...++++
T Consensus 19 ~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d----------------------------~~~~~~~ 67 (105)
T d2ifqa1 19 GDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD----------------------------DCQDVAS 67 (105)
T ss_dssp TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT----------------------------TCHHHHH
T ss_pred CCCEEEEEEE-cCCccchhhhhhhhhhhccccc--cceeeecccc----------------------------cCHhHHH
Confidence 3448999999 9999999999999999988875 4556555544 2356788
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.|++. .+|+++++ +||+.+.+..| .+.+++.+.|+.+
T Consensus 68 ~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~~~ 104 (105)
T d2ifqa1 68 ECEVK------CMPTFQFF-KKGQKVGEFSG-----ANKEKLEATINEL 104 (105)
T ss_dssp HTTCC------BSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred HcCce------EEEEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHhh
Confidence 99999 89999988 79999998754 2456777666654
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.10 E-value=5.5e-10 Score=81.82 Aligned_cols=92 Identities=16% Similarity=0.059 Sum_probs=65.0
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc---CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEc
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL---NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~---gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (271)
.+..++ .+|++|| ++||++|+...|.+.++..+.... .|.++.|..+
T Consensus 11 ~~~~~~-v~i~~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~---------------------------- 60 (107)
T d1a8la2 11 RNIDQD-VRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI---------------------------- 60 (107)
T ss_dssp TTCCSC-EEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG----------------------------
T ss_pred HhcCCC-eEEEEEE-cCccccchhhChhHHhhhhhhhhccCCcEEEEEeccc----------------------------
Confidence 344444 5677788 999999999999999987665432 2444444332
Q ss_pred CChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 180 ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 180 ~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
...++++.|||. .+|++ ++.++|+++.+..|. ...+++++.|+.+
T Consensus 61 ~~~~l~~~~~V~------~vPTi-~i~~~G~~~~~~~G~----~~~~~~~~~i~~a 105 (107)
T d1a8la2 61 EYPEWADQYNVM------AVPKI-VIQVNGEDRVEFEGA----YPEKMFLEKLLSA 105 (107)
T ss_dssp GCHHHHHHTTCC------SSCEE-EEEETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred cccccccccccc------cceEE-EEEeCCeEEEEEECC----CCHHHHHHHHHHh
Confidence 124688999999 89975 556899999987653 4567777777654
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.09 E-value=3.4e-10 Score=84.28 Aligned_cols=84 Identities=25% Similarity=0.355 Sum_probs=66.8
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++||++|+...|.|.++.+++. ++.++-|..|. ..++++.
T Consensus 28 ~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~~----------------------------~~~l~~~ 76 (114)
T d1xfla_ 28 KTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE----------------------------LKSVASD 76 (114)
T ss_dssp TCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------SHHHHHH
T ss_pred CCeEEEEEE-cCCCCCccccccchhhhccccc--ccceeEEEeee----------------------------ceeeccc
Confidence 348999999 9999999999999999998875 57776665542 3578899
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
||+. .+|+++++ ++|+++....+ .+.+++.+.|+.
T Consensus 77 ~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k 111 (114)
T d1xfla_ 77 WAIQ------AMPTFMFL-KEGKILDKVVG-----AKKDELQSTIAK 111 (114)
T ss_dssp TTCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHH
T ss_pred ccee------eeEEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHH
Confidence 9999 89998888 79999998754 245677666653
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.08 E-value=3.5e-10 Score=84.17 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=69.3
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.+++||+|| ++||++|+...|.|.++.+++. ++.++-|..|. ..++++.
T Consensus 26 ~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~~~ 74 (113)
T d1r26a_ 26 DILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN----------------------------NSEIVSK 74 (113)
T ss_dssp SSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHHH
T ss_pred CCeEEEEEE-CCCCccchhhceeccccccccc--ccccccccccc----------------------------chhhHHH
Confidence 348999999 9999999999999999999885 78888777653 3678999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
||+. .+|+++++ ++|+.+.+..+ .+.+++.+.|+++
T Consensus 75 ~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~l~~~ 110 (113)
T d1r26a_ 75 CRVL------QLPTFIIA-RSGKMLGHVIG-----ANPGMLRQKLRDI 110 (113)
T ss_dssp TTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred cccc------CCCEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHHH
Confidence 9999 89998887 79999998764 2446666666655
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.08 E-value=5.3e-10 Score=82.95 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=69.9
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| ++||++|+...|.+.++.+++.+ .+.++.|.+|. +.+++
T Consensus 23 ~~k-~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~ 71 (112)
T d1ep7a_ 23 EHK-PIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVA 71 (112)
T ss_dssp HTC-CEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHH
T ss_pred cCC-eEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeeccc----------------------------ccccc
Confidence 345 8999999 99999999999999999999874 48888887753 35788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++|++. .+|+++++ ++|+.+....+ .+.+++.+.|++.
T Consensus 72 ~~~~v~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k~ 109 (112)
T d1ep7a_ 72 EAAGIT------AMPTFHVY-KDGVKADDLVG-----ASQDKLKALVAKH 109 (112)
T ss_dssp HHHTCC------BSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred cccccc------CCCEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHHH
Confidence 999999 89998887 79999998754 3566766666543
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=3.8e-10 Score=83.16 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=67.8
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.+.+||.|| ++||++|+...|.|.++.+++. ++.++-|..|. +.++++.
T Consensus 21 ~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~----------------------------~~~l~~~ 69 (107)
T d1gh2a_ 21 SRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ----------------------------CQGTAAT 69 (107)
T ss_dssp TSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHHH
T ss_pred CCEEEEEEE-CCCCCCccccchhhhccccccc--ccccccccccc----------------------------chhhhhh
Confidence 348999999 9999999999999999999886 57777776543 3568889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
||+. .+|+++++ ++|+.+....+ .+.+++.+.|+.
T Consensus 70 ~~v~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k 104 (107)
T d1gh2a_ 70 NNIS------ATPTFQFF-RNKVRIDQYQG-----ADAVGLEEKIKQ 104 (107)
T ss_dssp TTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHH
T ss_pred cCce------eceEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHH
Confidence 9999 89998888 89999998764 356677666654
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=3.9e-11 Score=90.34 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=64.7
Q ss_pred ecccccCCcEEEEEEecCC-------CCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcc
Q 024201 101 KLSDYIGKKYVILFFYPLD-------FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLK 173 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t-------~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~ 173 (271)
.+.+.+|| +++|+|| ++ ||++|+...|.+.++.+++.+ ++.++.|.++... .|
T Consensus 15 ~l~~~~gk-~v~v~F~-a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~---~~-------------- 74 (119)
T d1woua_ 15 AVEQHNGK-TIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YW-------------- 74 (119)
T ss_dssp HHHTTTTS-EEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HH--------------
T ss_pred HHHHcCCC-EEEEEEE-ecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCc---cc--------------
Confidence 34556787 8999999 65 999999999999999988764 5899999988622 11
Q ss_pred cceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEE
Q 024201 174 YPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQ 212 (271)
Q Consensus 174 f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~ 212 (271)
.|.+..+.+.|+|. .+|++++++..+++.
T Consensus 75 ----~d~~~~l~~~~~V~------~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 75 ----KDPNNDFRKNLKVT------AVPTLLKYGTPQKLV 103 (119)
T ss_dssp ----HCTTCHHHHHHCCC------SSSEEEETTSSCEEE
T ss_pred ----chhhhhHHHhCCeE------EEEEEEEEECCeEEe
Confidence 24567899999999 899999997555554
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.04 E-value=4.2e-10 Score=83.56 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=65.4
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++||++|+...|.|.++.+++. ++.++-|..| ...++++.
T Consensus 26 ~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d----------------------------~~~~l~~~ 74 (113)
T d1ti3a_ 26 QKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVD----------------------------ELKAVAEE 74 (113)
T ss_dssp SSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETT----------------------------TCHHHHHH
T ss_pred CCEEEEEEE-cCccccchhhhhhhhhhhccCC--CceEEeeeee----------------------------cccccccc
Confidence 348999999 9999999999999999998875 5666666554 23578899
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
|+|. .+|+++++ +||+.+....+. +.+++.+.|+.
T Consensus 75 ~~I~------~~Pt~~~~-k~G~~v~~~~G~-----~~~~l~~~i~k 109 (113)
T d1ti3a_ 75 WNVE------AMPTFIFL-KDGKLVDKTVGA-----DKDGLPTLVAK 109 (113)
T ss_dssp HHCS------STTEEEEE-ETTEEEEEEECC-----CTTHHHHHHHH
T ss_pred Ceec------ccceEEEE-ECCEEEEEEcCC-----CHHHHHHHHHH
Confidence 9999 89998888 699999997652 33556665553
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.02 E-value=3e-13 Score=107.99 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=40.4
Q ss_pred EecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 100 v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
-.+.+++++ ++||+|| ++|||+|+.++|.|.+++++++ ++.++.|++|
T Consensus 47 ~~l~~~~~~-~~~l~~~-~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d 94 (166)
T d1z6na1 47 ERLQRIERR-YRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKG 94 (166)
T ss_dssp HHHHTCCSC-EEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHH
T ss_pred HHHHHhcCC-eEEEEEE-eCcCccHHHHHHHHHHHHHHCC--CCcEEEEECc
Confidence 356778888 8899999 9999999999999999999886 5666666665
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.02 E-value=1.2e-10 Score=87.61 Aligned_cols=89 Identities=11% Similarity=0.185 Sum_probs=63.4
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+.++++|.|| +.|||.|+...|.|.++.++|.+..+.++-|..| .+.++++
T Consensus 29 ~~~~vll~f~-a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d----------------------------~~~~l~~ 79 (119)
T d2es7a1 29 GDGVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE----------------------------QSEAIGD 79 (119)
T ss_dssp CSEEEEECCC-SCC----CCHHHHHHHHHHTCTTSCCEEEEECHH----------------------------HHHHHHH
T ss_pred CCcEEEEeec-CCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC----------------------------CCHHHHH
Confidence 3447888888 8999999999999999999998655655555432 2357899
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.||+. .+|+++++ +||+.+....+. .+.+++++.|+.+
T Consensus 80 ~~~V~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~l 117 (119)
T d2es7a1 80 RFNVR------RFPATLVF-TDGKLRGALSGI----HPWAELLTLMRSI 117 (119)
T ss_dssp TTTCC------SSSEEEEE-SCC----CEESC----CCHHHHHHHHHHH
T ss_pred hcCcC------cceEEEEE-EcCeEEEEeeCC----CCHHHHHHHHHHH
Confidence 99999 89999999 799999997653 5678888888876
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.5e-09 Score=83.41 Aligned_cols=95 Identities=9% Similarity=0.052 Sum_probs=73.0
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.+++||.|| +.||++|....|.|.++.+++++ .+.++-|.+|. +.++++.
T Consensus 22 ~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~----------------------------~~~la~~ 71 (137)
T d1qgva_ 22 DRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITE----------------------------VPDFNKM 71 (137)
T ss_dssp SSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------CCTTTTS
T ss_pred CCEEEEEEE-CCCCccchhcChHHHHHHHHhhc-cceEEEeeccc----------------------------cchhhhh
Confidence 348999999 99999999999999999999974 37777787764 2468889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCC------CCCCHHHHHHHHHHHHHhh
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA------IGRSVDETLRTLQALQYVQ 239 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~------~~~~~~e~l~~l~~l~~~~ 239 (271)
|+|. ..|+++++ ++|+.+....+..+ .-++.+++++.++.+....
T Consensus 72 ~~I~------~~PT~~~f-~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~~ 122 (137)
T d1qgva_ 72 YELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 122 (137)
T ss_dssp SCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred cCee------eEEEEEEE-eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHHH
Confidence 9999 89999999 68888876554322 1146788888888775443
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.1e-10 Score=89.35 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=71.6
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
+++++|.|| +.|||.|+...|.|.++.++|.++.+.+.-|.+|. +.++++.
T Consensus 36 ~~vVll~f~-a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~----------------------------~~~la~~ 86 (132)
T d2hfda1 36 DGVVLLSSD-PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ----------------------------SEAIGDR 86 (132)
T ss_dssp EEEEEECSC-CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH----------------------------HHHHHHH
T ss_pred CcEEEEEee-CCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC----------------------------CHHHHHh
Confidence 347788888 99999999999999999999986655555554432 3679999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
|+|. .+|+++++ ++|+++....+. .+.+++++.|+.+.
T Consensus 87 ~~V~------~~PT~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~ll 124 (132)
T d2hfda1 87 FGVF------RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLV 124 (132)
T ss_dssp HTCC------SCCEEEEE-ETTEEEEEECCC----SCHHHHHHHHHHHH
T ss_pred hccC------cceeEEEE-EcCcEeeeecCC----CCHHHHHHHHHHHh
Confidence 9999 89999888 899999987543 56888999888765
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.94 E-value=3.6e-09 Score=76.97 Aligned_cols=82 Identities=10% Similarity=0.235 Sum_probs=63.9
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| ++||++|....|.+.++.+++. ++.++-|..|. ..++++.|
T Consensus 19 ~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d~----------------------------~~~~~~~~ 67 (103)
T d1syra_ 19 ELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE----------------------------VSEVTEKE 67 (103)
T ss_dssp SEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------THHHHHHT
T ss_pred CcEEEEEe-CCcccCcccccccchhhhhccc--ceEEEeecccc----------------------------Ccceeeee
Confidence 48999999 9999999999999999999885 56666666543 34688999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
++. .+|+++++ ++|+.+.+..| .+.+++.+.|+
T Consensus 68 ~V~------~~Pt~i~~-k~G~~v~~~~G-----~~~~~l~~~i~ 100 (103)
T d1syra_ 68 NIT------SMPTFKVY-KNGSSVDTLLG-----ANDSALKQLIE 100 (103)
T ss_dssp TCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHH
T ss_pred eee------cceEEEEE-ECCEEEEEEeC-----cCHHHHHHHHH
Confidence 999 89987777 79999998754 23455555444
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.90 E-value=3.6e-10 Score=79.42 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=57.1
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+.|++|| ++||++|+...|.+.++.+++.. .+.++.+..| .+.+++++||
T Consensus 4 v~v~~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~d----------------------------~~~~la~~~~ 53 (85)
T d1fo5a_ 4 VKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVM----------------------------ENPQKAMEYG 53 (85)
T ss_dssp EEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESS----------------------------SSCCTTTSTT
T ss_pred eEEEEEE-CCCCcChHhhhhhcccccccccc-cccccccccc----------------------------ccccccccCC
Confidence 7888999 99999999999999988887653 3444444333 2345677899
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
|. .+|++ +++++|+++ + ..+.+++++.|+.
T Consensus 54 V~------~~Pt~-~i~~~g~~~----G----~~~~~~l~~~i~~ 83 (85)
T d1fo5a_ 54 IM------AVPTI-VINGDVEFI----G----APTKEALVEAIKK 83 (85)
T ss_dssp TC------CSSEE-EETTEEECC----S----SSSSHHHHHHHHH
T ss_pred ce------EeeEE-EEECCcEEE----C----CCCHHHHHHHHHh
Confidence 99 88985 677888643 2 1345777777764
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=5e-09 Score=78.21 Aligned_cols=91 Identities=10% Similarity=0.156 Sum_probs=70.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
++++.++|.|| +.||++|....|.+.++.+++++.++.|..|.++. +.+++
T Consensus 25 ~~~~~~lV~fy-a~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~----------------------------~~~l~ 75 (119)
T d2b5ea4 25 QSHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE----------------------------NQDLC 75 (119)
T ss_dssp TTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT----------------------------CHHHH
T ss_pred hcCCeEEEEEE-CCccCcccccchhhhhhhhhhcccceeeeeeeccc----------------------------hHHHH
Confidence 34458999999 89999999999999999999987778888787642 35789
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+.|++. ..|+++++ ++|+......+. .....+++++.|+.
T Consensus 76 ~~~~v~------~~Pti~~f-~~g~~~~~~~y~--g~~~~~~l~~fi~k 115 (119)
T d2b5ea4 76 MEHNIP------GFPSLKIF-KNSDVNNSIDYE--GPRTAEAIVQFMIK 115 (119)
T ss_dssp HHTTCC------SSSEEEEE-ETTCTTCEEECC--SCCSHHHHHHHHHH
T ss_pred HHhccc------cCCeEEEE-ECCEEeeeEEec--CCCCHHHHHHHHHH
Confidence 999998 89999999 777655443222 23577888888774
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.86 E-value=1.2e-08 Score=73.33 Aligned_cols=84 Identities=12% Similarity=0.171 Sum_probs=63.2
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.++.|. +.++.|+ +.|||+|+...|.+.++..++. ++.+..|..+. +.
T Consensus 11 k~l~~~-~~i~~F~-s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~----------------------------~~ 58 (96)
T d1hyua4 11 RDIDGD-FEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT----------------------------FQ 58 (96)
T ss_dssp HHCCSC-EEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT----------------------------CH
T ss_pred HhcCCC-eEEEEEE-CCCCcchHHHHHHHHHHHHhCC--ceEEEEEeccc----------------------------ch
Confidence 345566 7788888 8999999999999999887654 57776665543 46
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+++..|||. .+|++++ ||+.++. + ....+++++.|+
T Consensus 59 ~l~~~~~I~------~vPt~~~---ng~~~~~--G----~~~~~~l~~~le 94 (96)
T d1hyua4 59 NEITERNVM------GVPAVFV---NGKEFGQ--G----RMTLTEIVAKVD 94 (96)
T ss_dssp HHHHHTTCC------SSSEEEE---TTEEEEE--S----CCCHHHHHHHHC
T ss_pred HHHhhcccc------cccEEEE---CCEEEEe--c----CCCHHHHHHHHh
Confidence 788899999 8999755 7887754 2 256888888764
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.85 E-value=7.1e-09 Score=76.90 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=63.3
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++++++|+|| +.|||+|+...|.|.++.++++ ..+..|.++...+.. ....+.+
T Consensus 25 ~~~~~~v~f~-~~~C~~C~~~~p~l~~~~~~~~---~~v~~v~~~~~~~~~----------------------~~~~~~~ 78 (115)
T d1zmaa1 25 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLN----------------------DLQAFRS 78 (115)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHH----------------------HHHHHHH
T ss_pred cCCCEEEEEc-CCCCccHHHHHHHHHHHHHHhh---hhhhhheeecccccc----------------------ccccccc
Confidence 3448999999 8999999999999999988874 345556665422211 1245788
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.|+|. .+|+++++ ++|+++.+..+. ...+++.+.|
T Consensus 79 ~~~V~------~~PTli~~-~~gk~~~~~~G~----~~~~el~~fl 113 (115)
T d1zmaa1 79 RYGIP------TVPGFVHI-TDGQINVRCDSS----MSAQEIKDFA 113 (115)
T ss_dssp HHTCC------SSCEEEEE-ETTEEEEECCTT----CCHHHHHHHH
T ss_pred ccccc------cccEEEEE-ECCEEEEEEcCC----CCHHHHHHHH
Confidence 89999 89999998 599998886443 2345554443
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.75 E-value=1.3e-08 Score=71.25 Aligned_cols=79 Identities=18% Similarity=0.342 Sum_probs=57.1
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
.|..|| ++||++|+...|.+.++.+++.+ ++.++-|.+| .+.+++++|||
T Consensus 4 ~v~~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d----------------------------~~~~l~~~~~V 53 (85)
T d1nhoa_ 4 NIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIM----------------------------VDREKAIEYGL 53 (85)
T ss_dssp CEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTT----------------------------TCGGGGGGTCS
T ss_pred EEEEEE-CCCCcchHHHHHHHhhhcccccc-cccccccccc----------------------------cchhhHHhcCc
Confidence 356688 99999999999999999999864 4777766654 24567889999
Q ss_pred ccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 191 LIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 191 ~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
. .+|++ ++|. +.++. + ..+.+++.+.|++
T Consensus 54 ~------~~Pt~-~~~~--~~~~~--G----~~~~~~l~~~i~~ 82 (85)
T d1nhoa_ 54 M------AVPAI-AING--VVRFV--G----APSREELFEAIND 82 (85)
T ss_dssp S------CSSEE-EETT--TEEEE--C----SSCCHHHHHHHHH
T ss_pred e------EeCEE-EECC--cEEEE--c----CCCHHHHHHHHHH
Confidence 9 89976 4554 44332 2 2355777777664
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=4.6e-09 Score=78.32 Aligned_cols=90 Identities=16% Similarity=0.313 Sum_probs=63.8
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
+.+++||.|| ++||++|+...|.+.++.++++..+ +.++-|.++ ....+
T Consensus 23 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~----------------------------~~~~l 73 (120)
T d1meka_ 23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT----------------------------EESDL 73 (120)
T ss_dssp HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETT----------------------------TCCSS
T ss_pred cCCcEEEEEE-CCCcCCccccchhhhhhcccccccccceeeeccccc----------------------------cchhH
Confidence 3448999999 9999999999999999999887654 344444443 23467
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++.|++. .+|+++++ ++|+.+....+. ..+..+++++.|+.
T Consensus 74 ~~~~~i~------~~Pt~~~~-~~G~~~~~~~~~--g~~~~~~l~~fi~~ 114 (120)
T d1meka_ 74 AQQYGVR------GYPTIKFF-RNGDTASPKEYT--AGREADDIVNWLKK 114 (120)
T ss_dssp HHHHTCC------SSSEEEEE-ESSCSSSCEECC--CCSSHHHHHHHHHT
T ss_pred HHHhCCc------cCCeEEEE-ECCeEeeeEEec--CCCCHHHHHHHHHH
Confidence 8889999 89999888 466543322121 13567888887764
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=7.4e-09 Score=78.82 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=62.6
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
..+.-.|| +++|+|| ++||++|+.+.+.+.+..+..+ .+.++|.|.+|.... . .
T Consensus 19 ~~A~~~~K-pvlv~F~-a~wC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~-------~-------~--------- 72 (135)
T d1sena_ 19 KEAAASGL-PLMVIIH-KSWCGACKALKPKFAESTEISE-LSHNFVMVNLEDEEE-------P-------K--------- 72 (135)
T ss_dssp HHHHHHTC-CEEEEEE-CTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEGGGS-------C-------S---------
T ss_pred HHHHHcCC-cEEEEEE-ecCCCCceecchhhhhhHHHHH-hcCCcEEEeCCCCcC-------H-------H---------
Confidence 33445677 9999999 9999999999999877654333 234566666653110 0 0
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCC------CCCCHHHHHHHHHHH
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA------IGRSVDETLRTLQAL 235 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~------~~~~~~e~l~~l~~l 235 (271)
... ..+... ..|+++++|++|+++....+... .....+++++.++..
T Consensus 73 ~~~--~~~~~~------~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a 125 (135)
T d1sena_ 73 DED--FSPDGG------YIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 125 (135)
T ss_dssp CGG--GCTTCS------CSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred HHH--HHhhcc------cceeEEEECCCCeEEEEecCCCCCcchhccCCCHHHHHHHHHHH
Confidence 000 011111 47999999999998876444221 234567777776643
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=3.1e-08 Score=75.80 Aligned_cols=88 Identities=14% Similarity=0.247 Sum_probs=63.1
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+.+||.|| +.||++|+...|.+.++.+++++.+..+..+.+|. +..+++.|
T Consensus 31 k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~----------------------------~~~~~~~~ 81 (140)
T d2b5ea1 31 KDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDH----------------------------TENDVRGV 81 (140)
T ss_dssp CCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG----------------------------GGCCCSSC
T ss_pred CCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEeeec----------------------------cchhcccc
Confidence 37899999 99999999999999999999987665555555442 11234568
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++. .+|+++++ ++|+......+. -.+..+++++.|+.
T Consensus 82 ~v~------~~Ptl~~f-~~g~~~~~~~y~--G~~t~~~l~~fi~~ 118 (140)
T d2b5ea1 82 VIE------GYPTIVLY-PGGKKSESVVYQ--GSRSLDSLFDFIKE 118 (140)
T ss_dssp CCS------SSSEEEEE-CCTTSCCCCBCC--SCCCHHHHHHHHHH
T ss_pred ccc------cCCeEEEE-ECCEEcceeEeC--CCCCHHHHHHHHHH
Confidence 888 89999999 467655442221 23578888888764
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2.5e-06 Score=65.71 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=64.9
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEc
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (271)
+.-.+| +++|+|+ +.||+.|+..-... .++.+.+ ++++.++.|..++.+
T Consensus 38 Ak~~~K-~llV~~~-~~~C~~C~~m~~~v~~d~~V~~~l-~~~fV~~~v~~~~~e------------------------- 89 (147)
T d2dlxa1 38 GQMQNK-WLMINIQ-NVQDFACQCLNRDVWSNEAVKNII-REHFIFWQVYHDSEE------------------------- 89 (147)
T ss_dssp HHHHTC-EEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHH-HHTEEEEEEESSSHH-------------------------
T ss_pred HHHcCC-cEEEEEe-cCCCCchHHHHHhccCCHHHHHHH-hhheeEeeecccchh-------------------------
Confidence 333456 9999999 99999998764432 2222223 336777777776532
Q ss_pred CChHHHHHhCCccCCCCccceEEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 180 ITKSISKSYGVLIPDQGIALRGLFIIDK-EGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 180 ~~~~~~~~ygv~~~~~g~~~P~~~lID~-~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
...+++.|++. ..|+++|||+ +|+++..+ + ..+.++.++.|+...
T Consensus 90 -~~~~~~~y~v~------~~Pti~~idp~~ge~v~~~-~----~~~~~~fl~~L~~fl 135 (147)
T d2dlxa1 90 -GQRYIQFYKLG------DFPYVSILDPRTGQKLVEW-H----QLDVSSFLDQVTGFL 135 (147)
T ss_dssp -HHHHHHHHTCC------SSSEEEEECTTTCCCCEEE-S----SCCHHHHHHHHHHHH
T ss_pred -hhhhhhheecC------ceeEEEEEeCCCCeEeccc-C----CCCHHHHHHHHHHHH
Confidence 13567788888 8999999997 58887664 2 246889998888653
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.31 E-value=3e-06 Score=62.91 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=64.3
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+++||.|| +.||++|+. |.+.++++++.+. .+.+.-|.+++.. .+.+.++++
T Consensus 20 ~~~lV~Fy-a~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~-----------------------~~~n~~l~~ 73 (122)
T d2c0ga2 20 PYSVVKFD-IASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG-----------------------ELENKALGD 73 (122)
T ss_dssp SEEEEEEE-ESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSST-----------------------TCTTHHHHH
T ss_pred CcEEEEEE-CCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccc-----------------------cccCHHHHH
Confidence 58999999 999999994 8999999888653 3444446554311 124578999
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.|++... ..|+++++..++...... .....+.++++++.|+.
T Consensus 74 ~~~i~~~----~~PTi~~f~~g~~~~~~~--~~~g~rt~~~l~~fv~~ 115 (122)
T d2c0ga2 74 RYKVDDK----NFPSIFLFKGNADEYVQL--PSHVDVTLDNLKAFVSA 115 (122)
T ss_dssp HTTCCTT----SCCEEEEESSSSSSEEEC--CTTSCCCHHHHHHHHHH
T ss_pred HhhcccC----CCCcEEEEeCCccccccc--ccCCCCCHHHHHHHHHH
Confidence 9998522 589999996554443321 22334678888887763
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.19 E-value=1.2e-05 Score=59.65 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=57.8
Q ss_pred cEEEEEEecCCCCCChHHHHHH-------HHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 109 KYVILFFYPLDFTFVCPTEITA-------FSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~-------L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+.++|.|| +.||+.|. ..+. +.+..+.++..+|.+..|.++. +
T Consensus 29 ~~~~V~Fy-apwC~~~~-~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~----------------------------~ 78 (124)
T d1a8ya1 29 EVLALLYH-EPPEDDKA-SQRQFEMEELILELAAQVLEDKGVGFGLVDSEK----------------------------D 78 (124)
T ss_dssp SEEEEEEE-CCCCSSHH-HHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT----------------------------S
T ss_pred CeEEEEEE-CCCccchh-hhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec----------------------------c
Confidence 47899999 99998653 3333 3333334445566666665542 4
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.++++.|+|. ..|+.+++. +|+++. + .-.++.+.+++.|..+
T Consensus 79 ~~l~~~~~I~------~yPTi~~f~-~g~~~~-y----~G~r~~~~l~~fi~~~ 120 (124)
T d1a8ya1 79 AAVAKKLGLT------EEDSIYVFK-EDEVIE-Y----DGEFSADTLVEFLLDV 120 (124)
T ss_dssp HHHHHTTTCC------STTCEEEEE-SSSEEE-C----CSCCSHHHHHHHHHHH
T ss_pred cchhhccccc------cCCcEEEec-cCccEE-e----eCCCCHHHHHHHHHHh
Confidence 6789999999 899999984 787763 2 1246788888887654
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.16 E-value=1.4e-06 Score=63.71 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=29.9
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN 142 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g 142 (271)
.+++||.|| +.||++|+...|.+.++.+++...+
T Consensus 20 ~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~~ 53 (116)
T d2djja1 20 TKDVLIEFY-APWCGHCKALAPKYEELGALYAKSE 53 (116)
T ss_dssp TSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSS
T ss_pred CCCEEEEEE-ecccccccccchHHHHHHHHHhccc
Confidence 348999999 9999999999999999999987543
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.86 E-value=6e-06 Score=67.58 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=61.6
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+|||+|| ..||+.|....+.|.++..+|. ++.|+-|..+. . . +...|+
T Consensus 122 ~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~----------~-------~------------~~~~~~ 169 (217)
T d2trcp_ 122 TIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRASN----------T-------G------------AGDRFS 169 (217)
T ss_dssp EEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHH----------H-------T------------CSTTSC
T ss_pred eEEEEEE-cCCCCChhhhhhhHHHHhhhcc--cceEEEEcccc----------c-------h------------hHHhCC
Confidence 7999999 8999999999999999999886 58888774431 0 0 112366
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCC---CCHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG---RSVDETLRTLQ 233 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~---~~~~e~l~~l~ 233 (271)
+. .+|+++++ ++|+++...++....+ -..+++...|.
T Consensus 170 i~------~lPtl~~y-k~G~~v~~~vg~~~~~g~~~~~~~lE~~L~ 209 (217)
T d2trcp_ 170 SD------VLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLN 209 (217)
T ss_dssp GG------GCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHH
T ss_pred CC------CCCeEEEE-ECCEEEEEEECccccccccCCHHHHHHHHH
Confidence 77 78999999 8999999987743322 23455544443
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.71 E-value=1.1e-05 Score=57.80 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=50.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
++|++|+ ..||++|....+.|.++..+|. +++ |.+|. |.+.++.+.|+
T Consensus 17 p~i~lft-~~~C~~C~~a~~~L~~~~~~~~---~~~--v~vd~--------------------------~~~~~l~~~y~ 64 (100)
T d1wjka_ 17 PVLTLFT-KAPCPLCDEAKEVLQPYKDRFI---LQE--VDITL--------------------------PENSTWYERYK 64 (100)
T ss_dssp CEEEEEE-CSSCHHHHHHHHHTSTTSSSSE---EEE--EETTS--------------------------STTHHHHHHSS
T ss_pred CEEEEEE-CCCCCChHHHHHHHHHhhhhcc---eEE--Eeccc--------------------------ccCHHHHHHhc
Confidence 6788888 8999999988888887765543 233 33332 23567888898
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+. +|.+ +| ||+.+..+ .-+.+++.+.|+++
T Consensus 65 ~~-------VPvl-~i--dg~~~~~g------~~d~~~L~~~L~~l 94 (100)
T d1wjka_ 65 FD-------IPVF-HL--NGQFLMMH------RVNTSKLEKQLRKL 94 (100)
T ss_dssp SS-------CSEE-EE--SSSEEEES------SCCHHHHHHHHHSS
T ss_pred cc-------CCce-ee--cCceEEeC------CCCHHHHHHHHHHH
Confidence 65 6754 45 57776442 23556676666643
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.001 Score=51.40 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=55.3
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--CCHH---HH---------HHHHHHhhhcCCCCCcccc
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--DSVF---SH---------LAWVQTDRKSGGLGDLKYP 175 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d~~~---~~---------~~~~~~~~~~~~~~~~~f~ 175 (271)
.+|+.|+ --.||+|+...+.+.++.++. .+.++.+.. -.++ .. ..+.+.+...+...+....
T Consensus 38 ~tv~vF~-D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (169)
T d1v58a1 38 VIVYVFA-DPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP 113 (169)
T ss_dssp EEEEEEE-CTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred EEEEEEE-CCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccccc
Confidence 6777777 566999999999887776543 366665533 2111 11 1122222222211111111
Q ss_pred -eE-------EcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 176 -LI-------ADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 176 -~l-------~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.. .+.+.++++.+|+. .+|++|+.|++|+++..
T Consensus 114 ~~~~~~~~~~i~~n~~~a~~~gi~------gTPt~i~~~~~g~~~~~ 154 (169)
T d1v58a1 114 ANVSTEQMKVLSDNEKLMDDLGAN------VTPAIYYMSKENTLQQA 154 (169)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTCC------SSCEEEEEETTTEEEEE
T ss_pred chhhHHHHHHHHHHHHHHHhcCCC------CCCEEEEECCCCCEEEe
Confidence 11 11135677889998 89999999999987665
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.0013 Score=50.03 Aligned_cols=112 Identities=12% Similarity=0.008 Sum_probs=61.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--C--CHHH------------HHHHHHHhhhcCCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFS------------HLAWVQTDRKSGGL 169 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d--~~~~------------~~~~~~~~~~~~~~ 169 (271)
.+| .+|+.|. --.||+|+...+.+.++.+ .++.++.+.. . .+.. ...+.+........
T Consensus 25 ~ak-~tIv~Fs-D~~CpyC~~~~~~l~~~~~----~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 98 (156)
T d1eeja1 25 QEK-HVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSV 98 (156)
T ss_dssp TCC-EEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCC
T ss_pred CCC-EEEEEEe-CCCCHHHHHHHHHHHHhhc----cCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhcccc
Confidence 455 7888888 5669999998888877643 3566555432 1 1110 01111111111111
Q ss_pred CCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHh
Q 024201 170 GDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYV 238 (271)
Q Consensus 170 ~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~ 238 (271)
......-..+.+.++++.+|+. .+|++|+. ||+++.- ....+++.+.|++.+..
T Consensus 99 ~~~~~~~~i~~~~~la~~lgv~------GTPt~~~~--nG~~v~G-------~~~~e~l~~~i~~~~k~ 152 (156)
T d1eeja1 99 APASCDVDIADHYALGVQLGVS------GTPAVVLS--NGTLVPG-------YQPPKEMKEFLDEHQKM 152 (156)
T ss_dssp CCCCCSCCHHHHHHHHHHHTCC------SSSEEECT--TSCEEES-------CCCHHHHHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHcCCc------CCCEEEEe--CCeEecC-------CCCHHHHHHHHHHHHHH
Confidence 1111111112247789999999 89986653 6886532 13578888888776533
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.92 E-value=0.0018 Score=49.43 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=33.8
Q ss_pred EecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC-cEEEEEe
Q 024201 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN-TEILGVS 149 (271)
Q Consensus 100 v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g-v~vv~VS 149 (271)
+.+-+-.++ +.|+.|+ --.||+|....+.+.++.+++.+.+ +.++-+.
T Consensus 17 ~~~G~~~a~-v~I~ef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (172)
T d1z6ma1 17 LHIGESNAP-VKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKL 65 (172)
T ss_dssp EEESCTTCS-EEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CeecCCCCC-EEEEEEE-CCCCHhHHHHHHHHhhhhhhhccccceeeeecc
Confidence 445554555 6677777 4569999999999999998887654 4555443
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.64 E-value=0.00099 Score=50.51 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=57.9
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-----CHH------------HHHHHHHHhhhcCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-----SVF------------SHLAWVQTDRKSGG 168 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-----~~~------------~~~~~~~~~~~~~~ 168 (271)
.+| .+|+.|. --.||+|+...+.+.++.+ .++.++.+-.. +.. ...+|.... ....
T Consensus 25 ~ak-~~I~~Fs-D~~CPyC~~~~~~l~~l~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~-~~~~ 97 (150)
T d1t3ba1 25 NEK-HVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAE-KGNL 97 (150)
T ss_dssp TCS-EEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHH-TTCC
T ss_pred CCC-EEEEEEE-CCCCHHHHHHhHHHHHHhc----cCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHh-hhcc
Confidence 455 6788887 5669999999888877754 35555554321 110 001111111 1000
Q ss_pred CCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 169 LGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 169 ~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.......-..+.+.++++.+|+. .+|++|+. ||+++.- ....+++.+.|++
T Consensus 98 ~~~~~~~~~i~~~~~la~~lGv~------GTPt~~~~--nG~~i~G-------~~~~~~l~~~l~~ 148 (150)
T d1t3ba1 98 PKEVKTPNIVKKHYELGIQFGVR------GTPSIVTS--TGELIGG-------YLKPADLLRALEE 148 (150)
T ss_dssp CSSCCCSSHHHHHHHHHHHHTCC------SSCEEECT--TSCCCCS-------CCCHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHhcCcC------CCCEEEEc--CCcEecC-------CCCHHHHHHHHHh
Confidence 00111111112246788999999 89987764 6875421 1356777777763
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.64 E-value=0.005 Score=44.61 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=56.4
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEE-EeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG-VSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~-VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
+.+||.|+ +.||..|.. |...++.+++++..-.+++ |.+.... .+.+.+++..
T Consensus 22 ~~~lV~F~-~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd-----------------------~~~n~~l~~~ 75 (122)
T d1g7ea_ 22 KFVLVKFD-TQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYG-----------------------DKLNMELSEK 75 (122)
T ss_dssp SEEEEEEE-CSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTT-----------------------SCHHHHHHHH
T ss_pred CeEEEEEe-cCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeecc-----------------------ccccHHHHHh
Confidence 48899999 899988753 6788888888764433433 4332200 1124667777
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQH-STINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~-~~~~~~~~~~~~~e~l~~l~ 233 (271)
|++.+. ..|+.+++ ++|.... ..+ .-.+..+.+++.|+
T Consensus 76 ~~~~I~----~yPTi~~f-~~G~~~~~~~y---~G~rt~~~l~~fi~ 114 (122)
T d1g7ea_ 76 YKLDKE----SYPVFYLF-RDGDFENPVPY---SGAVKVGAIQRWLK 114 (122)
T ss_dssp HTCSSS----SCEEEEEE-ESSCCCCCEEE---ESCCCHHHHHHHHH
T ss_pred hccccc----CCCeEEEE-ecCcccCceec---CCCCCHHHHHHHHH
Confidence 765422 68999888 4664322 111 12467888888775
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=96.06 E-value=0.012 Score=44.72 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=26.0
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL 141 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~ 141 (271)
++ ++|+.|+ --.||+|...-+.+.++.+++.+.
T Consensus 18 ~~-~~Ivef~-d~~Cp~C~~~~~~~~~l~~~~~~~ 50 (181)
T d1beda_ 18 SS-PVVSEFF-SFYCPHCNTFEPIIAQLKQQLPEG 50 (181)
T ss_dssp SS-CEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTT
T ss_pred CC-CEEEEEE-CCCCccchhhhhhhhhHhhhcccc
Confidence 44 7788888 455999999889999988887654
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.32 E-value=0.11 Score=41.44 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=31.6
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
.+||..|.+.||..|+..-..|.++.+. .+|..|++.+|
T Consensus 6 ~aVVElFTSqgCssCPpAd~~L~~L~~~---~~Vi~La~HVd 44 (225)
T d2axoa1 6 KGVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD 44 (225)
T ss_dssp CCEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred CcEEEEeeCCCCCCCHHHHHHHHHhhCC---CCEEEEEeccc
Confidence 4677777799999999988888887643 47888888887
|
| >d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Phenol hydroxylase, C-terminal domain species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=94.07 E-value=0.84 Score=35.41 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=91.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc---cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh----------c---
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY---IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK----------L--- 141 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~---~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~----------~--- 141 (271)
+.+|..+|++.+.- -.|++++.|.+. .|+ +-|++|- +.- .+..+...|.++.+.+.+ +
T Consensus 17 ~~iG~R~~sa~V~R--~aDa~p~~L~~~~~adGr-frI~vFa-Gd~--~~~~~~~~l~~la~~L~s~~s~~~r~t~~~~d 90 (201)
T d1pn0a2 17 CVVGTRFKSQPVVR--HSEGLWMHFGDRLVTDGR-FRIIVFA-GKA--TDATQMSRIKKFAAYLDSENSVISRYTPKGAD 90 (201)
T ss_dssp SCTTSBCCCCEEEE--TTTTEEEEGGGGCCCSSC-EEEEEEE-ECT--TSHHHHHHHHHHHHHHHSTTSHHHHHSBTTSC
T ss_pred CCCceecCCceEEE--ecCCCEeehhccccCCCc-EEEEEEe-cCC--CccchhhHHHHHHHHHhcccchhhhccCCCCC
Confidence 78999999999874 457789999764 566 8888886 442 333344444444444321 1
Q ss_pred ---CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccc-eEE------cCChHHHHHhCCccCCCCccceEEEEEcCCCcE
Q 024201 142 ---NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYP-LIA------DITKSISKSYGVLIPDQGIALRGLFIIDKEGVI 211 (271)
Q Consensus 142 ---gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~-~l~------D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V 211 (271)
-++++.|......+.+ |.+ ...........|. +.. +.++...+.||+... .| ..+||-|||-|
T Consensus 91 ~~~~i~~~~V~~~~~~~ie-~~d-lP~~~~~~~~~~~~~~~d~~~~~~~~~~ay~~~GId~~-~G----~vVVVRPDgyV 163 (201)
T d1pn0a2 91 RNSRIDVITIHSCHRDDIE-MHD-FPAPALHPKWQYDFIYADCDSWHHPHPKSYQAWGVDET-KG----AVVVVRPDGYT 163 (201)
T ss_dssp TTSSEEEEEEESSCTTSCC-GGG-SCTTTTSCTTCCSSEEECSCCSSSCCCCHHHHHTBCTT-TC----EEEEECTTSBE
T ss_pred CCCcEEEEEEecCCCCccc-ccc-ccccccCCcceEEeeecccccccCCcccHHHHhCCCCC-ce----EEEEECCCcce
Confidence 2788888665422111 111 0000000011121 222 234788999998632 23 47999999999
Q ss_pred EEEEeccCCCCCCHHHHHHHHHHHH-HhhhCCCcccCCCCCC
Q 024201 212 QHSTINNLAIGRSVDETLRTLQALQ-YVQENPDEVCPAGWKP 252 (271)
Q Consensus 212 ~~~~~~~~~~~~~~~e~l~~l~~l~-~~~~~~~~~~p~~~~~ 252 (271)
-.+. . -.+++++-+.++... ....+++...+++|..
T Consensus 164 g~v~--~---Ldd~~~L~~yF~~fl~~~~~~~~~~~~~~~~~ 200 (201)
T d1pn0a2 164 SLVT--D---LEGTAEIDRYFSGILVEPKEKSGAQTEADWTK 200 (201)
T ss_dssp EEEE--C---TTTHHHHHHHHHTTBCCCSSBCCSCCCCCTTC
T ss_pred EEEE--c---cccHHHHHHHHHHhhhCccccccccccccccc
Confidence 8884 1 235777777777643 2234446777888863
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=93.63 E-value=0.11 Score=39.35 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=27.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh--cCcEEEEEeC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK--LNTEILGVST 150 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~--~gv~vv~VS~ 150 (271)
.++ ++|+.|+ --.||+|...-+.|..+.+..+. .++.++-+..
T Consensus 17 ~~~-~~VvEff-dy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (188)
T d1fvka_ 17 AGA-PQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 61 (188)
T ss_dssp TTC-CSEEEEE-CTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred CCC-CEEEEEE-CCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence 455 7788888 45599999887777555443332 2456665544
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.79 E-value=0.73 Score=32.70 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=26.7
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCc---EEEEEeccCCCCCCHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGV---IQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~---V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.++++.|++. ..|++.|.+. |+ |++. +.+.|.....++..|
T Consensus 68 ~~~~~~~~ve------r~Ps~~i~~~-g~~~gIrF~---GiP~GhEf~SlilaI 111 (119)
T d1a8la1 68 KELAKRYRID------RAPATTITQD-GKDFGVRYF---GLPAGHEFAAFLEDI 111 (119)
T ss_dssp HHHHHHTTCC------SSSEEEEEET-TBCCSEEEE---SCCCTTHHHHHHHHH
T ss_pred hhHHHhhccc------cCceEEEecC-CcccceEEE---eccCchhHHHHHHHH
Confidence 5788999999 8999888764 54 5554 344555444444443
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.58 E-value=1.2 Score=29.06 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=45.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCcc
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLI 192 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~ 192 (271)
|-.+ ++.|+.|.......++...++. -..++.-| + | -.++. .||+.
T Consensus 4 IkVl-g~gC~~C~~~~~~v~~a~~e~g-i~a~v~kv--~---------------------------d-~~ei~-~ygVm- 49 (77)
T d1iloa_ 4 IQIY-GTGCANCQMLEKNAREAVKELG-IDAEFEKI--K---------------------------E-MDQIL-EAGLT- 49 (77)
T ss_dssp EEEE-CSSSSTTHHHHHHHHHHHHHTT-CCEEEEEE--C---------------------------S-HHHHH-HHTCS-
T ss_pred EEEe-CCCCccHHHHHHHHHHHHHHcC-CceEEEEe--C---------------------------C-HHHHH-HcCCc-
Confidence 3445 7889999999888888877652 11222222 1 1 13455 59999
Q ss_pred CCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 193 PDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 193 ~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.+|.. +| ||+++.. + .-.+.+|+.+.|
T Consensus 50 -----stPal-vI--dg~vv~~--G---~vPs~~ei~~~L 76 (77)
T d1iloa_ 50 -----ALPGL-AV--DGELKIM--G---RVASKEEIKKIL 76 (77)
T ss_dssp -----SSSCE-EE--TTEEEEC--S---SCCCHHHHHHHC
T ss_pred -----CCCEE-EE--CCEEEEE--e---cCCCHHHHHHHh
Confidence 78886 55 6888876 1 123566666543
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.27 Score=31.78 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=23.4
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
.+|. .+|||.|......| .++|+.+.-+.++...+
T Consensus 4 ~iYs-~~~C~~C~~ak~~L-------~~~~i~y~~~~i~~~~~ 38 (76)
T d1h75a_ 4 TIYT-RNDCVQCHATKRAM-------ENRGFDFEMINVDRVPE 38 (76)
T ss_dssp EEEE-CTTCHHHHHHHHHH-------HHTTCCCEEEETTTCHH
T ss_pred EEEe-CCCCccHHHHHHHH-------HhcCceeEEEeecCCHH
Confidence 3444 79999998765444 44578877777765433
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=88.59 E-value=0.51 Score=30.07 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=24.2
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.|. ..+||+|.....-| +++|+.+.-+.++...+.
T Consensus 4 ~iYt-~~~C~~C~~ak~~L-------~~~~i~~~~~~i~~~~~~ 39 (74)
T d1r7ha_ 4 TLYT-KPACVQCTATKKAL-------DRAGLAYNTVDISLDDEA 39 (74)
T ss_dssp EEEE-CTTCHHHHHHHHHH-------HHTTCCCEEEETTTCHHH
T ss_pred EEEe-CCCChhHHHHHHHH-------HHcCCceEEEEccCCHHH
Confidence 3444 79999998765444 345888888888764433
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=88.22 E-value=0.23 Score=32.91 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=26.1
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
++|- -++||+|.....-|.++..+++ ++.+.-+..+
T Consensus 4 viys-k~~Cp~C~~aK~ll~~~~~~~~--~i~~~~~~~~ 39 (85)
T d1egoa_ 4 VIFG-RSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR 39 (85)
T ss_dssp EEEC-CTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred EEEe-CCCCHhHHHHHHHHHHcCCCCC--CceEEEEecC
Confidence 3444 7999999988888877776665 6777666544
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=87.27 E-value=0.35 Score=31.66 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=20.4
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.|..+|||+|.....-| +++|+.+.-+.++.
T Consensus 5 iys~~~Cp~C~~ak~~L-------~~~~i~y~~~di~~ 35 (82)
T d1fova_ 5 IYTKETCPYCHRAKALL-------SSKGVSFQELPIDG 35 (82)
T ss_dssp EEECSSCHHHHHHHHHH-------HHHTCCCEEEECTT
T ss_pred EEeCCCCHhHHHHHHHH-------HHcCCCeEEEeccc
Confidence 34479999998654433 33477777777664
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=86.36 E-value=0.5 Score=30.16 Aligned_cols=34 Identities=9% Similarity=-0.014 Sum_probs=22.5
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
|+.|. -++||+|.....-|. ++|+.+.-+.++..
T Consensus 7 I~iYs-~~~C~~C~~ak~lL~-------~~~i~~~~~~v~~~ 40 (74)
T d1nm3a1 7 ISIFT-KPGCPFCAKAKQLLH-------DKGLSFEEIILGHD 40 (74)
T ss_dssp EEEEE-CSSCHHHHHHHHHHH-------HHTCCCEEEETTTT
T ss_pred EEEEE-CCCCHHHHHHHHHHH-------HcCCCeEEEEccCc
Confidence 44555 789999987655443 34777777777653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=80.89 E-value=5.3 Score=30.81 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=36.9
Q ss_pred ccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH-----HHHHHHHHHhhhcCCCCCcccceEEc
Q 024201 105 YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV-----FSHLAWVQTDRKSGGLGDLKYPLIAD 179 (271)
Q Consensus 105 ~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~-----~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (271)
+.|+++.|+.|...+.. -++. .+.++...++.+|-.|.-|+.|.. +.++.|.+.. +.++....+
T Consensus 4 ~~~~~p~vi~lvGptGv--GKTT--TiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l-------~v~~~~~~~ 72 (211)
T d2qy9a2 4 VEGKAPFVILMVGVNGV--GKTT--TIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN-------NIPVIAQHT 72 (211)
T ss_dssp CCSCTTEEEEEECCTTS--CHHH--HHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHT-------TCCEECCST
T ss_pred CCCCCCEEEEEECCCCC--CHHH--HHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhc-------CCccccccc
Confidence 45665677777733322 2222 233344455666777888888863 4556666665 555544444
Q ss_pred CC
Q 024201 180 IT 181 (271)
Q Consensus 180 ~~ 181 (271)
..
T Consensus 73 ~~ 74 (211)
T d2qy9a2 73 GA 74 (211)
T ss_dssp TC
T ss_pred CC
Confidence 43
|